RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11112
         (632 letters)



>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 62

 Score = 25.8 bits (57), Expect = 3.0
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 67  PDHVYLDAMGFGMGCCCLQVTFQACNISEAKTLY 100
                L A G G          QA    +   ++
Sbjct: 14  AGGFVLLAGGVGFFLQAPTPFLQALEEGKEVGVH 47


>d1bvsa3 b.40.4.2 (A:1-63) DNA helicase RuvA subunit, N-terminal
           domain {Mycobacterium leprae [TaxId: 1769]}
          Length = 63

 Score = 25.4 bits (56), Expect = 5.3
 Identities = 7/34 (20%), Positives = 9/34 (26%)

Query: 67  PDHVYLDAMGFGMGCCCLQVTFQACNISEAKTLY 100
            DH  ++A G G             N      L 
Sbjct: 14  LDHAVIEAAGIGYRVNATPSALATLNQGSQARLV 47


>d1wuba_ b.61.6.1 (A:) Polyisoprenoid-binding protein TTHA0802
           (TT1927B) {Thermus thermophilus [TaxId: 274]}
          Length = 176

 Score = 27.0 bits (59), Expect = 6.0
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 5/101 (4%)

Query: 268 MRFKPPPPNSSIGWRVE---FRPCETQLTDFENAAFVCFVVLLTRIILSYNLN-FVIPIS 323
           M++   P ++SI ++V           L     +          ++    +         
Sbjct: 1   MKWNLDPSHTSIDFKVRHMGIASVRGSLKVLSGSVETDEAGRPIQVEAVIDAASIATGEP 60

Query: 324 KVDENMKRAQKRDALNREKFWFRRDCAIKKTGGEDSSIPGD 364
           + D +++ A    A    +  F     I+  GG    I G+
Sbjct: 61  QRDGHLRSADFLHAEQYPEIRF-VSTQIEPLGGNRYRIQGN 100


>d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase
           IroE {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 26.5 bits (57), Expect = 9.2
 Identities = 9/78 (11%), Positives = 18/78 (23%), Gaps = 2/78 (2%)

Query: 148 LTDVDCRWNVISGSVDCRTREERGLEPLRKNRFV--IPKSRYDSIDSYLSPEHGEKYNDV 205
                   +  S S       +  L  +     +    K       S    ++ E +   
Sbjct: 159 WLSSSYFRSYYSASPSLGRGYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVG 218

Query: 206 PLIYDRDIYNQLIQNGID 223
            L         L   G++
Sbjct: 219 VLSKIHTTLTILKDKGVN 236


>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 209

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 36/209 (17%)

Query: 266 QTMRFKPPPPNSSIGWRVEFRPCETQLT-DFENAAFVCFVVLLTRIILSYNLNFVIPISK 324
           + ++     P  S GW +E    E +L                 +I +++N+N  IP + 
Sbjct: 21  RKIQKHKTLPKMSGGWELELNGTEAKLVRKVAG----------EKITVTFNINNSIPPTF 70

Query: 325 VD----ENMKRAQKRDALNREKFWFRRDCAIKKTGGEDSSIPGDSQQSRPPMDGTPETNP 380
                    ++ ++++        F  +      G +   +     +     +   E++ 
Sbjct: 71  DGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDI 130

Query: 381 LYMNGNSVYSGSDEA---KYNGATNNNNNENIKQDGGEEYVEMTINEIINGKEGVFPGLA 437
             +   S  S  +            ++ +  +  D   +++            GV    A
Sbjct: 131 FSIREVSFQSTGESEWKDTNYTLNTDSLDWAL-YDHLMDFLA---------DRGVDNTFA 180

Query: 438 PLISRYLISMDVDTDTHCTIQQYLKLIQN 466
             +     +++         Q+Y+  +++
Sbjct: 181 DELVELSTALE--------HQEYITFLED 201


>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia
           chrysanthemi [TaxId: 556]}
          Length = 342

 Score = 26.6 bits (58), Expect = 9.7
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 85  QVTFQACNISEAK-TLYD----QLTPLCPIMNGTYFIFHSELSVFYNS 127
           +  F+  ++   + TLY          C I     FIF    ++F N 
Sbjct: 141 RAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNC 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,398,433
Number of extensions: 114211
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 9
Length of query: 632
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 541
Effective length of database: 1,158,166
Effective search space: 626567806
Effective search space used: 626567806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)