Query psy11113
Match_columns 699
No_of_seqs 310 out of 741
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 18:16:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2264|consensus 100.0 2E-160 5E-165 1291.4 42.1 640 1-696 105-793 (907)
2 KOG1022|consensus 100.0 7.1E-80 1.5E-84 666.0 27.4 465 66-696 75-588 (691)
3 PF09258 Glyco_transf_64: Glyc 100.0 1.1E-44 2.3E-49 373.7 6.8 143 553-696 1-144 (247)
4 PF03016 Exostosin: Exostosin 100.0 2.4E-40 5.3E-45 343.2 15.6 234 89-391 3-302 (302)
5 KOG1021|consensus 100.0 2.1E-32 4.6E-37 305.0 19.1 274 84-430 105-456 (464)
6 PF00852 Glyco_transf_10: Glyc 96.4 0.0089 1.9E-07 65.5 7.7 154 164-393 137-297 (349)
7 cd03801 GT1_YqgM_like This fam 95.9 0.042 9.2E-07 55.6 9.4 84 337-425 288-373 (374)
8 TIGR03088 stp2 sugar transfera 95.5 0.26 5.7E-06 52.8 14.0 85 337-426 285-371 (374)
9 cd04184 GT2_RfbC_Mx_like Myxoc 95.0 0.062 1.3E-06 52.1 6.9 108 552-662 2-119 (202)
10 KOG1021|consensus 94.8 0.0071 1.5E-07 68.8 -0.3 65 616-691 331-395 (464)
11 PF00535 Glycos_transf_2: Glyc 94.7 0.0046 1E-07 56.6 -1.7 111 554-664 1-116 (169)
12 cd03814 GT1_like_2 This family 94.6 0.17 3.7E-06 52.3 9.4 83 337-425 279-363 (364)
13 cd03819 GT1_WavL_like This fam 94.5 0.12 2.6E-06 54.0 8.1 71 338-412 278-351 (355)
14 cd03822 GT1_ecORF704_like This 94.2 0.16 3.4E-06 52.6 8.1 82 337-425 282-365 (366)
15 cd04962 GT1_like_5 This family 94.2 0.32 7E-06 51.4 10.4 84 338-426 284-369 (371)
16 PF00534 Glycos_transf_1: Glyc 93.3 0.15 3.3E-06 48.4 5.5 64 337-404 105-170 (172)
17 cd03823 GT1_ExpE7_like This fa 93.2 0.35 7.5E-06 49.7 8.4 81 337-426 276-358 (359)
18 cd03820 GT1_amsD_like This fam 93.2 0.37 8E-06 48.8 8.4 70 337-409 265-336 (348)
19 cd03807 GT1_WbnK_like This fam 92.9 0.45 9.8E-06 48.6 8.7 82 337-425 281-364 (365)
20 PRK15427 colanic acid biosynth 92.7 0.49 1.1E-05 52.6 9.3 85 337-426 317-404 (406)
21 PRK10307 putative glycosyl tra 92.7 0.83 1.8E-05 50.1 11.0 85 338-427 321-407 (412)
22 cd03794 GT1_wbuB_like This fam 92.7 0.38 8.1E-06 49.5 7.8 71 338-412 313-385 (394)
23 TIGR03449 mycothiol_MshA UDP-N 92.5 0.77 1.7E-05 49.9 10.3 85 337-427 315-401 (405)
24 cd03798 GT1_wlbH_like This fam 92.5 0.36 7.8E-06 49.2 7.3 83 337-425 291-374 (377)
25 cd04186 GT_2_like_c Subfamily 92.4 0.27 5.9E-06 45.4 5.8 104 555-659 1-107 (166)
26 cd03818 GT1_ExpC_like This fam 92.4 0.62 1.3E-05 50.9 9.4 71 338-412 314-386 (396)
27 PLN02871 UDP-sulfoquinovose:DA 91.8 0.83 1.8E-05 51.4 9.9 81 337-423 344-429 (465)
28 cd06439 CESA_like_1 CESA_like_ 91.7 0.38 8.2E-06 48.6 6.3 102 549-652 27-135 (251)
29 cd02510 pp-GalNAc-T pp-GalNAc- 91.6 0.33 7.1E-06 51.2 6.0 107 554-660 1-117 (299)
30 cd02525 Succinoglycan_BP_ExoA 91.6 0.41 9E-06 47.6 6.4 111 552-662 1-117 (249)
31 cd05844 GT1_like_7 Glycosyltra 91.5 0.68 1.5E-05 48.9 8.2 73 336-412 282-356 (367)
32 cd02526 GT2_RfbF_like RfbF is 91.4 0.53 1.2E-05 46.9 6.9 94 555-653 1-101 (237)
33 cd04951 GT1_WbdM_like This fam 91.2 3.6 7.8E-05 42.9 13.3 81 337-425 275-358 (360)
34 PF13641 Glyco_tranf_2_3: Glyc 91.0 0.17 3.6E-06 50.2 2.9 106 553-660 3-120 (228)
35 TIGR02149 glgA_Coryne glycogen 91.0 1.2 2.7E-05 47.6 9.7 84 338-426 294-385 (388)
36 cd03808 GT1_cap1E_like This fa 90.9 0.83 1.8E-05 46.4 8.0 72 337-412 276-349 (359)
37 cd06421 CESA_CelA_like CESA_Ce 90.5 0.4 8.7E-06 47.4 5.0 107 552-660 2-119 (234)
38 cd02511 Beta4Glucosyltransfera 90.4 0.63 1.4E-05 47.2 6.5 99 552-656 1-101 (229)
39 KOG2619|consensus 90.4 1.9 4.1E-05 48.2 10.5 160 165-396 159-321 (372)
40 PF13524 Glyco_trans_1_2: Glyc 90.3 0.81 1.7E-05 39.7 6.2 70 337-412 11-82 (92)
41 cd03800 GT1_Sucrose_synthase T 90.0 0.84 1.8E-05 48.6 7.4 71 338-412 316-388 (398)
42 cd06913 beta3GnTL1_like Beta 1 90.0 0.62 1.4E-05 46.3 6.0 106 555-661 1-119 (219)
43 PRK15484 lipopolysaccharide 1, 90.0 3.7 8.1E-05 45.0 12.5 84 338-426 291-376 (380)
44 TIGR02472 sucr_P_syn_N sucrose 89.8 1.2 2.5E-05 50.0 8.5 85 336-425 352-438 (439)
45 cd06423 CESA_like CESA_like is 89.7 0.66 1.4E-05 42.1 5.5 112 555-667 1-118 (180)
46 cd04185 GT_2_like_b Subfamily 89.3 0.59 1.3E-05 45.5 5.2 96 555-652 1-105 (202)
47 cd03821 GT1_Bme6_like This fam 88.9 1.1 2.3E-05 46.1 6.9 77 337-420 294-372 (375)
48 cd06437 CESA_CaSu_A2 Cellulose 88.8 0.57 1.2E-05 47.0 4.7 102 552-655 2-115 (232)
49 PRK10714 undecaprenyl phosphat 88.7 0.72 1.6E-05 50.0 5.8 112 548-660 3-123 (325)
50 cd04955 GT1_like_6 This family 88.5 2.4 5.1E-05 44.4 9.2 81 337-425 281-362 (363)
51 cd03792 GT1_Trehalose_phosphor 88.0 3.2 7E-05 44.7 10.1 84 337-427 286-371 (372)
52 cd02522 GT_2_like_a GT_2_like_ 87.8 1.1 2.3E-05 44.1 5.9 106 553-662 1-107 (221)
53 cd03795 GT1_like_4 This family 87.7 1.8 4E-05 45.0 7.9 72 338-413 279-353 (357)
54 cd04946 GT1_AmsK_like This fam 87.5 1.1 2.5E-05 49.6 6.5 74 336-413 322-398 (407)
55 cd03806 GT1_ALG11_like This fa 87.4 6.7 0.00014 43.9 12.5 68 337-409 337-410 (419)
56 cd03809 GT1_mtfB_like This fam 87.1 1.7 3.7E-05 44.9 7.2 66 338-409 286-353 (365)
57 cd06434 GT2_HAS Hyaluronan syn 87.0 0.86 1.9E-05 45.3 4.7 99 553-652 2-103 (235)
58 cd04192 GT_2_like_e Subfamily 86.9 0.93 2E-05 44.5 4.8 103 555-660 1-116 (229)
59 PRK09814 beta-1,6-galactofuran 86.7 1.5 3.2E-05 47.3 6.7 67 338-410 250-316 (333)
60 cd03825 GT1_wcfI_like This fam 86.1 5.8 0.00013 41.5 10.5 85 337-426 277-363 (365)
61 PRK14099 glycogen synthase; Pr 86.1 6.7 0.00015 45.0 11.8 85 336-427 381-478 (485)
62 cd03813 GT1_like_3 This family 85.2 3.9 8.4E-05 46.4 9.3 82 337-423 383-472 (475)
63 TIGR03469 HonB hopene-associat 85.0 1.3 2.7E-05 49.1 5.1 110 552-665 41-172 (384)
64 PLN02949 transferase, transfer 84.7 16 0.00034 42.0 13.9 86 337-429 367-458 (463)
65 cd03805 GT1_ALG2_like This fam 84.7 2.3 5.1E-05 45.6 7.0 71 338-413 313-385 (392)
66 cd06427 CESA_like_2 CESA_like_ 84.7 2.3 4.9E-05 43.1 6.5 113 552-667 2-125 (241)
67 PRK11204 N-glycosyltransferase 84.6 1.7 3.7E-05 48.1 6.0 102 552-656 55-164 (420)
68 TIGR03087 stp1 sugar transfera 84.5 3.9 8.3E-05 44.8 8.7 82 337-425 311-394 (397)
69 cd06442 DPM1_like DPM1_like re 84.4 1.1 2.4E-05 44.0 4.0 104 555-659 1-111 (224)
70 TIGR02095 glgA glycogen/starch 83.8 9.9 0.00021 42.9 11.7 82 337-426 378-471 (473)
71 cd03802 GT1_AviGT4_like This f 83.6 4.5 9.8E-05 41.9 8.3 49 337-391 257-305 (335)
72 cd03816 GT1_ALG1_like This fam 83.4 10 0.00022 42.2 11.4 70 337-412 330-404 (415)
73 cd04195 GT2_AmsE_like GT2_AmsE 82.6 1.6 3.5E-05 42.2 4.3 102 554-656 1-110 (201)
74 cd04949 GT1_gtfA_like This fam 82.4 3.8 8.2E-05 43.8 7.4 71 337-410 291-363 (372)
75 PRK15490 Vi polysaccharide bio 82.4 17 0.00037 43.0 13.0 86 336-426 484-574 (578)
76 PHA01630 putative group 1 glyc 82.2 6.7 0.00014 42.8 9.2 84 338-426 223-329 (331)
77 PRK14098 glycogen synthase; Pr 81.8 10 0.00022 43.6 11.0 83 337-427 394-485 (489)
78 cd03811 GT1_WabH_like This fam 81.4 22 0.00049 35.8 12.2 70 338-411 277-351 (353)
79 PRK00654 glgA glycogen synthas 81.4 13 0.00027 42.2 11.4 83 337-427 369-462 (466)
80 cd04179 DPM_DPG-synthase_like 81.2 1.2 2.6E-05 42.3 2.8 107 555-661 1-115 (185)
81 cd03799 GT1_amsK_like This is 81.0 5.6 0.00012 41.4 7.9 72 337-412 274-347 (355)
82 cd03817 GT1_UGDG_like This fam 80.7 6.5 0.00014 40.4 8.2 69 338-411 292-362 (374)
83 cd06433 GT_2_WfgS_like WfgS an 79.9 1.9 4E-05 41.0 3.6 101 554-656 1-105 (202)
84 cd03796 GT1_PIG-A_like This fa 78.3 11 0.00024 41.2 9.5 87 337-430 282-370 (398)
85 TIGR01556 rhamnosyltran L-rham 78.2 3.9 8.5E-05 42.5 5.6 98 559-658 2-105 (281)
86 cd04196 GT_2_like_d Subfamily 76.7 9.9 0.00022 36.8 7.7 103 554-656 1-109 (214)
87 cd06438 EpsO_like EpsO protein 76.7 2.7 5.9E-05 40.6 3.7 106 555-661 1-116 (183)
88 cd00761 Glyco_tranf_GTA_type G 75.6 2.7 6E-05 37.1 3.2 103 555-657 1-108 (156)
89 PF04728 LPP: Lipoprotein leuc 74.5 10 0.00022 31.6 5.8 7 41-47 38-44 (56)
90 cd02520 Glucosylceramide_synth 72.7 7.5 0.00016 38.1 5.7 98 552-651 2-111 (196)
91 cd04187 DPM1_like_bac Bacteria 72.3 4.2 9.1E-05 38.9 3.8 107 555-661 1-115 (181)
92 cd03804 GT1_wbaZ_like This fam 72.0 5.9 0.00013 42.0 5.1 70 338-411 274-347 (351)
93 PRK09922 UDP-D-galactose:(gluc 71.4 11 0.00024 40.6 7.2 66 337-405 270-339 (359)
94 PRK10803 tol-pal system protei 70.4 7.6 0.00016 41.3 5.5 39 9-47 53-91 (263)
95 TIGR03111 glyc2_xrt_Gpos1 puta 69.7 10 0.00022 42.9 6.6 101 552-656 50-161 (439)
96 cd06420 GT2_Chondriotin_Pol_N 69.7 3.9 8.4E-05 38.8 2.9 96 555-651 1-104 (182)
97 PF04728 LPP: Lipoprotein leuc 69.2 9.8 0.00021 31.7 4.6 34 3-36 10-43 (56)
98 cd02514 GT13_GLCNAC-TI GT13_GL 68.7 7.4 0.00016 43.0 5.1 92 555-647 4-118 (334)
99 COG1216 Predicted glycosyltran 66.5 19 0.00041 38.4 7.6 105 552-659 4-117 (305)
100 PHA01633 putative glycosyl tra 66.4 20 0.00044 39.5 7.9 30 336-369 235-264 (335)
101 cd06435 CESA_NdvC_like NdvC_li 64.5 12 0.00025 37.4 5.2 99 554-652 1-110 (236)
102 COG3883 Uncharacterized protei 64.5 14 0.0003 39.7 5.9 42 2-43 51-92 (265)
103 cd03791 GT1_Glycogen_synthase_ 63.6 42 0.00091 37.6 10.0 81 337-425 383-474 (476)
104 TIGR02468 sucrsPsyn_pln sucros 63.6 28 0.0006 44.1 9.1 88 336-429 583-672 (1050)
105 COG3883 Uncharacterized protei 63.3 13 0.00028 39.9 5.4 43 1-43 57-99 (265)
106 PRK11637 AmiB activator; Provi 62.5 15 0.00032 41.6 6.1 41 3-43 82-122 (428)
107 PLN02939 transferase, transfer 61.5 33 0.00071 43.1 9.1 64 337-403 869-946 (977)
108 PRK10125 putative glycosyl tra 61.1 30 0.00065 38.7 8.2 81 337-426 319-403 (405)
109 PHA02047 phage lambda Rz1-like 60.8 40 0.00087 31.1 7.3 53 2-54 33-85 (101)
110 TIGR02209 ftsL_broad cell divi 59.5 28 0.00062 30.1 6.1 53 2-54 23-76 (85)
111 TIGR02918 accessory Sec system 59.2 42 0.00091 38.9 9.2 85 336-426 404-498 (500)
112 PF04977 DivIC: Septum formati 58.1 33 0.00071 29.0 6.1 33 4-36 18-50 (80)
113 cd03793 GT1_Glycogen_synthase_ 58.0 53 0.0011 39.2 9.7 40 336-377 486-528 (590)
114 PRK00888 ftsB cell division pr 57.6 24 0.00053 32.6 5.6 35 4-38 28-62 (105)
115 COG3074 Uncharacterized protei 57.5 23 0.00051 30.8 4.9 38 2-39 24-61 (79)
116 PRK09039 hypothetical protein; 57.5 23 0.0005 39.2 6.4 42 2-43 136-177 (343)
117 KOG3215|consensus 56.7 24 0.00052 36.6 5.8 36 3-38 89-124 (222)
118 PF04102 SlyX: SlyX; InterPro 56.6 21 0.00045 30.5 4.6 44 1-44 9-52 (69)
119 PRK09973 putative outer membra 56.2 21 0.00045 32.2 4.6 38 11-48 25-66 (85)
120 PF04977 DivIC: Septum formati 56.0 18 0.00039 30.6 4.2 28 2-29 23-50 (80)
121 PF11932 DUF3450: Protein of u 55.8 24 0.00052 37.0 5.9 42 2-43 62-103 (251)
122 PRK15179 Vi polysaccharide bio 55.5 1.4E+02 0.003 36.5 12.8 82 337-425 604-691 (694)
123 PRK10884 SH3 domain-containing 55.1 28 0.0006 36.1 6.1 17 24-40 139-155 (206)
124 KOG4119|consensus 54.7 62 0.0013 28.3 7.1 42 10-51 7-48 (71)
125 COG4942 Membrane-bound metallo 54.7 23 0.00049 40.4 5.8 44 2-45 44-87 (420)
126 PRK10073 putative glycosyl tra 53.4 36 0.00079 37.0 7.1 109 552-661 7-120 (328)
127 KOG4196|consensus 52.7 37 0.00081 32.9 6.0 41 2-42 80-120 (135)
128 PRK10018 putative glycosyl tra 52.6 17 0.00036 38.9 4.2 104 552-655 6-114 (279)
129 PLN02316 synthase/transferase 52.5 72 0.0016 40.5 10.1 86 336-425 931-1031(1036)
130 TIGR03472 HpnI hopanoid biosyn 52.3 29 0.00063 38.2 6.2 106 552-660 42-160 (373)
131 PLN00142 sucrose synthase 50.8 53 0.0012 40.6 8.5 85 336-425 678-768 (815)
132 PF05615 THOC7: Tho complex su 50.7 38 0.00081 32.4 5.9 38 3-40 74-111 (139)
133 PRK11637 AmiB activator; Provi 50.5 31 0.00067 39.0 6.1 40 4-43 76-115 (428)
134 PF07334 IFP_35_N: Interferon- 50.3 69 0.0015 28.4 6.8 42 12-55 2-43 (76)
135 TIGR02338 gimC_beta prefoldin, 49.9 44 0.00096 30.8 6.0 41 5-45 69-109 (110)
136 PF08317 Spc7: Spc7 kinetochor 49.7 34 0.00074 37.4 6.1 32 4-35 217-248 (325)
137 PRK05749 3-deoxy-D-manno-octul 49.6 20 0.00043 39.7 4.4 81 338-427 334-419 (425)
138 PRK00295 hypothetical protein; 49.5 49 0.0011 28.4 5.7 42 2-43 11-52 (68)
139 PHA01750 hypothetical protein 49.4 12 0.00026 32.2 1.9 36 10-45 35-70 (75)
140 PRK15396 murein lipoprotein; P 49.3 31 0.00068 30.6 4.6 38 11-48 26-67 (78)
141 PLN02726 dolichyl-phosphate be 48.2 35 0.00075 34.7 5.6 106 552-660 10-128 (243)
142 PRK04406 hypothetical protein; 47.9 50 0.0011 28.9 5.7 42 2-43 17-58 (75)
143 PRK09973 putative outer membra 47.4 65 0.0014 29.1 6.3 45 4-48 25-69 (85)
144 PRK04325 hypothetical protein; 47.0 54 0.0012 28.6 5.7 42 2-43 15-56 (74)
145 PRK00736 hypothetical protein; 46.4 78 0.0017 27.2 6.5 42 2-43 11-52 (68)
146 PRK09343 prefoldin subunit bet 46.4 65 0.0014 30.5 6.7 45 5-49 73-117 (121)
147 PF05546 She9_MDM33: She9 / Md 45.5 39 0.00084 35.1 5.3 38 11-48 33-70 (207)
148 PF11853 DUF3373: Protein of u 45.4 16 0.00035 42.4 2.9 31 4-35 26-56 (489)
149 PRK13608 diacylglycerol glucos 45.3 51 0.0011 36.4 6.7 80 340-427 285-371 (391)
150 PRK09039 hypothetical protein; 45.1 27 0.00058 38.7 4.5 46 1-46 142-187 (343)
151 PF14915 CCDC144C: CCDC144C pr 44.6 41 0.00088 36.8 5.5 43 1-43 135-177 (305)
152 PF12709 Kinetocho_Slk19: Cent 44.2 70 0.0015 29.0 6.1 39 7-45 46-84 (87)
153 PRK02119 hypothetical protein; 44.1 63 0.0014 28.1 5.7 42 2-43 15-56 (73)
154 PRK00726 murG undecaprenyldiph 43.7 58 0.0013 34.9 6.7 85 339-426 263-356 (357)
155 PRK15396 murein lipoprotein; P 43.7 82 0.0018 28.0 6.4 39 5-43 27-65 (78)
156 cd03812 GT1_CapH_like This fam 43.1 1.6E+02 0.0034 30.8 9.7 63 337-404 279-343 (358)
157 PRK10803 tol-pal system protei 42.4 52 0.0011 35.1 6.0 39 5-43 56-94 (263)
158 COG0463 WcaA Glycosyltransfera 41.9 34 0.00073 30.6 3.9 97 551-651 3-107 (291)
159 cd04188 DPG_synthase DPG_synth 41.9 39 0.00085 33.2 4.7 103 555-660 1-117 (211)
160 PRK10698 phage shock protein P 41.7 67 0.0015 33.5 6.5 46 3-48 99-144 (222)
161 PF08317 Spc7: Spc7 kinetochor 41.6 50 0.0011 36.2 5.8 43 2-44 222-264 (325)
162 COG3879 Uncharacterized protei 41.1 48 0.001 35.4 5.3 42 1-42 55-96 (247)
163 COG3167 PilO Tfp pilus assembl 41.0 60 0.0013 33.5 5.8 44 1-44 47-93 (211)
164 PRK02793 phi X174 lysis protei 41.0 96 0.0021 26.9 6.3 42 2-43 14-55 (72)
165 PRK14583 hmsR N-glycosyltransf 40.6 53 0.0012 37.1 6.1 102 552-656 76-185 (444)
166 COG1422 Predicted membrane pro 40.6 74 0.0016 33.0 6.4 47 2-48 71-122 (201)
167 PRK09343 prefoldin subunit bet 40.6 76 0.0017 30.0 6.1 43 1-43 5-47 (121)
168 PF14282 FlxA: FlxA-like prote 40.5 68 0.0015 29.7 5.7 32 16-47 50-81 (106)
169 PRK13729 conjugal transfer pil 40.3 44 0.00095 38.7 5.2 38 3-40 76-120 (475)
170 PTZ00260 dolichyl-phosphate be 40.2 32 0.00068 37.6 4.0 102 549-653 68-189 (333)
171 PF02050 FliJ: Flagellar FliJ 40.1 98 0.0021 27.3 6.6 42 4-45 46-87 (123)
172 PF14817 HAUS5: HAUS augmin-li 39.8 50 0.0011 39.7 5.8 46 1-46 84-129 (632)
173 PF05377 FlaC_arch: Flagella a 39.6 81 0.0018 26.3 5.3 29 5-33 9-37 (55)
174 PF06005 DUF904: Protein of un 39.6 97 0.0021 27.0 6.1 33 5-37 20-52 (72)
175 cd04190 Chitin_synth_C C-termi 39.3 58 0.0013 33.4 5.6 99 555-669 1-115 (244)
176 TIGR02449 conserved hypothetic 38.8 1E+02 0.0022 26.5 6.0 43 5-47 2-44 (65)
177 TIGR02894 DNA_bind_RsfA transc 38.8 82 0.0018 31.6 6.2 43 3-45 104-146 (161)
178 PF06698 DUF1192: Protein of u 38.7 76 0.0016 26.8 5.1 32 6-37 24-55 (59)
179 PF14282 FlxA: FlxA-like prote 38.5 66 0.0014 29.7 5.3 25 21-45 48-72 (106)
180 PF02996 Prefoldin: Prefoldin 38.2 78 0.0017 29.0 5.7 42 4-45 78-119 (120)
181 PF11559 ADIP: Afadin- and alp 37.8 79 0.0017 30.5 6.0 34 5-38 68-101 (151)
182 PRK14161 heat shock protein Gr 37.4 75 0.0016 32.3 5.9 36 2-37 18-53 (178)
183 PF10111 Glyco_tranf_2_2: Glyc 37.2 41 0.00089 35.5 4.2 107 554-664 1-129 (281)
184 PF07989 Microtub_assoc: Micro 37.1 74 0.0016 27.9 5.0 33 9-41 42-74 (75)
185 PF08776 VASP_tetra: VASP tetr 37.0 1.4E+02 0.0029 23.5 5.7 34 10-45 3-37 (40)
186 PF07106 TBPIP: Tat binding pr 36.5 48 0.001 32.7 4.3 32 1-32 77-108 (169)
187 PF11559 ADIP: Afadin- and alp 36.5 86 0.0019 30.2 6.0 39 3-41 73-111 (151)
188 PRK14011 prefoldin subunit alp 36.4 86 0.0019 30.8 5.9 40 1-40 1-40 (144)
189 PRK10884 SH3 domain-containing 36.1 87 0.0019 32.5 6.2 42 2-43 124-165 (206)
190 PRK13609 diacylglycerol glucos 36.0 2.6E+02 0.0057 30.3 10.3 78 340-425 285-369 (380)
191 TIGR02977 phageshock_pspA phag 35.9 94 0.002 32.1 6.5 44 3-46 99-142 (219)
192 PRK00846 hypothetical protein; 35.8 1E+02 0.0022 27.3 5.7 43 2-44 19-61 (77)
193 KOG2264|consensus 35.7 63 0.0014 38.2 5.5 37 4-40 94-130 (907)
194 KOG3088|consensus 35.6 40 0.00087 36.7 3.8 20 16-35 66-85 (313)
195 PF14197 Cep57_CLD_2: Centroso 35.2 1.1E+02 0.0025 26.3 5.8 44 1-44 3-46 (69)
196 PRK15422 septal ring assembly 34.8 79 0.0017 28.2 4.8 26 3-28 18-43 (79)
197 KOG2630|consensus 34.7 67 0.0014 34.2 5.1 57 76-132 125-210 (254)
198 PRK14162 heat shock protein Gr 34.4 1E+02 0.0022 31.7 6.4 37 2-38 38-74 (194)
199 COG2433 Uncharacterized conser 34.3 86 0.0019 37.4 6.4 44 3-46 422-465 (652)
200 PF06005 DUF904: Protein of un 34.1 1.5E+02 0.0033 25.8 6.5 34 2-35 24-57 (72)
201 TIGR01133 murG undecaprenyldip 34.1 86 0.0019 33.1 6.1 66 339-405 261-334 (348)
202 PF01025 GrpE: GrpE; InterPro 33.8 79 0.0017 30.7 5.3 38 3-40 11-48 (165)
203 KOG3335|consensus 33.6 36 0.00078 34.6 2.8 34 10-43 99-132 (181)
204 PRK00888 ftsB cell division pr 33.3 74 0.0016 29.5 4.7 31 2-32 33-63 (105)
205 COG0438 RfaG Glycosyltransfera 33.2 1.8E+02 0.004 28.6 7.9 47 338-388 290-336 (381)
206 COG1819 Glycosyl transferases, 33.1 5.6E+02 0.012 29.0 12.6 88 338-427 310-401 (406)
207 PRK14148 heat shock protein Gr 32.8 1.2E+02 0.0025 31.4 6.4 37 2-38 39-75 (195)
208 PF15290 Syntaphilin: Golgi-lo 32.8 98 0.0021 33.7 6.1 41 5-45 70-124 (305)
209 TIGR02209 ftsL_broad cell divi 32.5 75 0.0016 27.4 4.4 32 12-43 26-57 (85)
210 PRK14160 heat shock protein Gr 31.6 1.1E+02 0.0025 31.8 6.2 38 1-38 59-96 (211)
211 smart00787 Spc7 Spc7 kinetocho 31.2 1E+02 0.0022 33.9 6.1 32 5-36 213-244 (312)
212 PF01920 Prefoldin_2: Prefoldi 31.2 71 0.0015 28.4 4.2 40 5-44 64-103 (106)
213 PRK03947 prefoldin subunit alp 31.1 1.3E+02 0.0029 28.6 6.3 42 2-43 5-46 (140)
214 PF11932 DUF3450: Protein of u 30.9 1E+02 0.0022 32.4 5.9 45 2-46 55-99 (251)
215 PF04859 DUF641: Plant protein 30.9 1.2E+02 0.0025 29.6 5.7 40 2-41 86-125 (131)
216 COG5509 Uncharacterized small 30.6 1E+02 0.0023 26.2 4.6 34 6-39 28-61 (65)
217 PF08647 BRE1: BRE1 E3 ubiquit 30.6 1.6E+02 0.0035 26.6 6.4 46 1-46 1-53 (96)
218 PF06156 DUF972: Protein of un 30.5 1.2E+02 0.0027 28.2 5.7 44 2-45 14-57 (107)
219 COG3074 Uncharacterized protei 30.3 1.4E+02 0.0031 26.1 5.5 31 4-34 19-49 (79)
220 PF10191 COG7: Golgi complex c 30.3 75 0.0016 39.1 5.4 48 1-48 75-132 (766)
221 PF09006 Surfac_D-trimer: Lung 30.2 1.3E+02 0.0027 24.4 4.8 27 12-38 1-27 (46)
222 PRK13729 conjugal transfer pil 30.1 1E+02 0.0022 35.9 6.0 45 2-46 68-119 (475)
223 PF10805 DUF2730: Protein of u 30.0 1E+02 0.0022 28.5 5.1 40 4-43 43-84 (106)
224 PF12718 Tropomyosin_1: Tropom 30.0 1.3E+02 0.0028 29.4 6.0 39 5-43 23-61 (143)
225 PF04012 PspA_IM30: PspA/IM30 29.9 1.2E+02 0.0026 31.0 6.1 41 5-45 100-140 (221)
226 PRK03947 prefoldin subunit alp 29.6 1.4E+02 0.003 28.5 6.1 42 4-45 95-136 (140)
227 PF10883 DUF2681: Protein of u 29.5 1.3E+02 0.0029 27.2 5.5 33 11-43 24-56 (87)
228 PRK10063 putative glycosyl tra 29.5 80 0.0017 32.9 4.8 92 552-646 2-102 (248)
229 cd04779 HTH_MerR-like_sg4 Heli 29.5 1.4E+02 0.0031 28.7 6.2 45 5-49 76-120 (134)
230 PF04012 PspA_IM30: PspA/IM30 29.4 1.4E+02 0.003 30.5 6.4 45 4-48 92-136 (221)
231 cd00632 Prefoldin_beta Prefold 29.3 1.5E+02 0.0032 27.0 6.0 39 5-43 65-103 (105)
232 PF13692 Glyco_trans_1_4: Glyc 29.3 66 0.0014 29.0 3.7 47 337-389 84-130 (135)
233 PRK14154 heat shock protein Gr 29.1 1.3E+02 0.0029 31.3 6.2 34 4-37 53-86 (208)
234 PF09006 Surfac_D-trimer: Lung 28.9 97 0.0021 25.0 4.0 27 5-31 1-27 (46)
235 PF04111 APG6: Autophagy prote 28.9 1.2E+02 0.0025 33.4 6.1 41 3-43 50-90 (314)
236 PF12958 DUF3847: Protein of u 28.7 1.2E+02 0.0027 27.4 5.1 32 12-43 3-34 (86)
237 PF11853 DUF3373: Protein of u 28.5 27 0.00059 40.5 1.2 10 197-206 169-178 (489)
238 PF08606 Prp19: Prp19/Pso4-lik 28.4 1.8E+02 0.0038 25.5 5.8 43 3-45 22-64 (70)
239 PF12329 TMF_DNA_bd: TATA elem 28.0 1.3E+02 0.0028 26.2 5.1 34 5-38 35-68 (74)
240 PF04568 IATP: Mitochondrial A 28.0 1.1E+02 0.0024 28.4 4.8 19 15-33 81-99 (100)
241 smart00338 BRLZ basic region l 27.9 76 0.0017 26.4 3.5 32 12-43 28-59 (65)
242 PF10883 DUF2681: Protein of u 27.7 1.6E+02 0.0035 26.7 5.7 38 4-41 24-61 (87)
243 TIGR01242 26Sp45 26S proteasom 27.6 1.1E+02 0.0024 33.7 5.7 39 5-43 1-39 (364)
244 TIGR02400 trehalose_OtsA alpha 27.5 2.7E+02 0.0058 32.1 8.9 80 337-425 368-454 (456)
245 PRK00025 lpxB lipid-A-disaccha 27.3 1.9E+02 0.0042 31.1 7.5 51 378-428 325-378 (380)
246 TIGR00998 8a0101 efflux pump m 27.3 1.4E+02 0.0031 31.9 6.4 32 10-41 94-125 (334)
247 PF12777 MT: Microtubule-bindi 27.3 90 0.0019 34.5 4.9 36 7-42 225-260 (344)
248 PHA01750 hypothetical protein 27.2 2E+02 0.0042 25.0 5.7 20 23-42 41-60 (75)
249 PF00170 bZIP_1: bZIP transcri 27.0 2.1E+02 0.0046 23.6 6.1 32 12-43 28-59 (64)
250 PF10828 DUF2570: Protein of u 26.8 1.5E+02 0.0033 27.5 5.6 40 4-43 26-65 (110)
251 TIGR02338 gimC_beta prefoldin, 26.7 1.9E+02 0.0041 26.7 6.2 41 3-43 3-43 (110)
252 PF13600 DUF4140: N-terminal d 26.6 1E+02 0.0022 27.8 4.4 30 9-38 69-98 (104)
253 PF00769 ERM: Ezrin/radixin/mo 26.5 1.7E+02 0.0037 31.0 6.7 47 1-47 80-126 (246)
254 PF01025 GrpE: GrpE; InterPro 26.4 1.5E+02 0.0033 28.7 5.9 38 1-38 16-53 (165)
255 PF13815 Dzip-like_N: Iguana/D 26.3 1.1E+02 0.0023 28.7 4.6 34 10-43 80-113 (118)
256 TIGR00293 prefoldin, archaeal 26.2 1.6E+02 0.0035 27.4 5.8 37 6-42 2-38 (126)
257 PRK13915 putative glucosyl-3-p 26.2 88 0.0019 33.9 4.5 111 551-665 31-157 (306)
258 PF10458 Val_tRNA-synt_C: Valy 26.2 1.9E+02 0.0041 24.3 5.6 25 2-26 3-27 (66)
259 PF06476 DUF1090: Protein of u 26.1 1.5E+02 0.0032 28.1 5.4 19 5-23 72-90 (115)
260 PRK14127 cell division protein 26.0 1.3E+02 0.0029 28.3 5.0 32 10-41 37-68 (109)
261 TIGR01843 type_I_hlyD type I s 25.9 1.4E+02 0.003 32.9 6.1 37 6-42 140-176 (423)
262 cd03788 GT1_TPS Trehalose-6-Ph 25.9 1.3E+02 0.0028 34.4 6.0 78 337-422 373-456 (460)
263 COG1730 GIM5 Predicted prefold 25.8 1.9E+02 0.0041 28.6 6.3 40 4-43 95-134 (145)
264 PF06637 PV-1: PV-1 protein (P 25.8 2.6E+02 0.0057 31.8 8.0 46 4-49 350-395 (442)
265 TIGR02473 flagell_FliJ flagell 25.6 2.1E+02 0.0045 26.7 6.4 41 5-45 63-103 (141)
266 cd04950 GT1_like_1 Glycosyltra 25.6 1.2E+02 0.0027 33.0 5.7 45 338-390 292-336 (373)
267 PF01486 K-box: K-box region; 25.5 94 0.002 28.1 3.9 42 1-42 17-67 (100)
268 COG2433 Uncharacterized conser 25.4 1.2E+02 0.0025 36.4 5.5 19 340-359 581-599 (652)
269 PF05667 DUF812: Protein of un 25.3 1.2E+02 0.0026 36.3 5.8 42 2-43 334-375 (594)
270 smart00787 Spc7 Spc7 kinetocho 25.3 1.5E+02 0.0033 32.6 6.2 41 3-43 218-258 (312)
271 TIGR03495 phage_LysB phage lys 25.2 1.8E+02 0.004 28.3 6.0 12 34-45 78-89 (135)
272 TIGR03545 conserved hypothetic 25.2 1.3E+02 0.0029 35.7 6.0 44 3-46 191-241 (555)
273 PF05739 SNARE: SNARE domain; 25.1 2E+02 0.0043 23.2 5.5 30 13-42 21-50 (63)
274 PLN02605 monogalactosyldiacylg 25.1 2.5E+02 0.0054 30.8 7.9 80 340-428 294-382 (382)
275 PF05212 DUF707: Protein of un 24.9 74 0.0016 34.8 3.6 59 596-654 85-144 (294)
276 PF02183 HALZ: Homeobox associ 24.8 1.9E+02 0.0041 23.0 5.0 34 4-37 6-39 (45)
277 PF03962 Mnd1: Mnd1 family; I 24.7 1.5E+02 0.0033 30.1 5.7 19 3-21 76-94 (188)
278 PF00919 UPF0004: Uncharacteri 24.5 1.3E+02 0.0027 27.5 4.5 27 114-140 18-45 (98)
279 cd00890 Prefoldin Prefoldin is 24.4 1.9E+02 0.0041 26.6 5.9 38 5-42 89-126 (129)
280 PRK05771 V-type ATP synthase s 24.3 1.5E+02 0.0033 35.4 6.5 44 2-45 214-257 (646)
281 PF05060 MGAT2: N-acetylglucos 24.1 1.1E+02 0.0024 34.4 4.9 45 546-590 26-70 (356)
282 smart00338 BRLZ basic region l 24.0 1.8E+02 0.004 24.1 5.1 35 4-38 27-61 (65)
283 PF11471 Sugarporin_N: Maltopo 23.9 1.3E+02 0.0029 25.3 4.2 29 8-36 30-58 (60)
284 PF10186 Atg14: UV radiation r 23.8 1.8E+02 0.0038 30.5 6.2 31 12-42 65-95 (302)
285 PRK14161 heat shock protein Gr 23.8 1.9E+02 0.0041 29.4 6.0 54 1-54 24-77 (178)
286 TIGR03185 DNA_S_dndD DNA sulfu 23.7 1.4E+02 0.0031 35.7 6.1 40 3-42 428-467 (650)
287 PF00170 bZIP_1: bZIP transcri 23.6 2.4E+02 0.0051 23.4 5.7 36 4-39 27-62 (64)
288 PF05667 DUF812: Protein of un 23.5 1.6E+02 0.0034 35.4 6.3 47 2-48 327-373 (594)
289 COG1579 Zn-ribbon protein, pos 23.5 1.7E+02 0.0037 31.1 5.9 41 4-44 111-151 (239)
290 PF11570 E2R135: Coiled-coil r 23.3 1.5E+02 0.0033 28.9 4.9 43 3-45 77-119 (136)
291 PRK05689 fliJ flagellar biosyn 23.3 2.3E+02 0.0051 27.0 6.4 43 4-46 65-107 (147)
292 PF05615 THOC7: Tho complex su 23.2 2.1E+02 0.0046 27.2 6.1 39 5-43 62-100 (139)
293 PF04394 DUF536: Protein of un 23.1 1.6E+02 0.0036 23.5 4.3 37 2-38 9-45 (45)
294 PRK10476 multidrug resistance 23.0 1.6E+02 0.0035 32.0 5.9 23 21-43 111-133 (346)
295 PF00038 Filament: Intermediat 22.9 1.8E+02 0.0039 31.1 6.2 43 2-44 53-95 (312)
296 PF14257 DUF4349: Domain of un 22.8 1.3E+02 0.0029 31.6 5.1 43 3-45 139-190 (262)
297 COG1579 Zn-ribbon protein, pos 22.6 2.1E+02 0.0047 30.4 6.4 41 5-45 33-73 (239)
298 PF13094 CENP-Q: CENP-Q, a CEN 22.6 2.2E+02 0.0047 27.9 6.1 48 4-51 42-89 (160)
299 cd00584 Prefoldin_alpha Prefol 22.6 2.2E+02 0.0047 26.6 5.9 39 5-43 89-127 (129)
300 PF10779 XhlA: Haemolysin XhlA 22.4 2.7E+02 0.0059 23.7 6.0 42 2-43 5-46 (71)
301 PRK15422 septal ring assembly 22.4 2.1E+02 0.0045 25.6 5.2 36 1-36 23-58 (79)
302 PF10224 DUF2205: Predicted co 22.4 3E+02 0.0065 24.6 6.3 36 12-47 18-53 (80)
303 PRK14139 heat shock protein Gr 22.3 2.3E+02 0.0049 29.1 6.3 35 4-38 33-67 (185)
304 PRK07720 fliJ flagellar biosyn 22.1 2.6E+02 0.0056 26.8 6.4 43 4-46 65-107 (146)
305 TIGR02470 sucr_synth sucrose s 22.0 3.2E+02 0.007 33.9 8.6 84 336-425 655-745 (784)
306 PRK14141 heat shock protein Gr 21.9 2E+02 0.0044 30.0 6.0 42 2-43 37-78 (209)
307 PF08826 DMPK_coil: DMPK coile 21.8 3.1E+02 0.0068 23.3 6.0 20 24-43 18-37 (61)
308 cd04191 Glucan_BSP_ModH Glucan 21.7 2.6E+02 0.0057 29.4 7.0 99 554-655 2-124 (254)
309 COG1842 PspA Phage shock prote 21.7 2.3E+02 0.0049 29.9 6.4 44 4-47 93-136 (225)
310 COG4238 Murein lipoprotein [Ce 21.6 2.4E+02 0.0053 25.0 5.4 39 9-47 24-66 (78)
311 PF05377 FlaC_arch: Flagella a 21.5 3.6E+02 0.0079 22.6 6.1 33 11-43 1-33 (55)
312 PRK14143 heat shock protein Gr 21.4 2.4E+02 0.0051 30.0 6.5 36 3-38 67-102 (238)
313 PF13801 Metal_resist: Heavy-m 21.3 2.2E+02 0.0048 25.1 5.5 42 8-49 43-84 (125)
314 PF02388 FemAB: FemAB family; 21.1 1.7E+02 0.0036 33.2 5.6 44 2-45 248-294 (406)
315 cd03785 GT1_MurG MurG is an N- 21.0 2.1E+02 0.0047 30.1 6.2 65 340-406 264-338 (350)
316 PRK14140 heat shock protein Gr 21.0 2.5E+02 0.0054 28.9 6.3 33 5-37 39-71 (191)
317 PRK14147 heat shock protein Gr 20.9 2.2E+02 0.0048 28.7 5.9 29 8-36 23-51 (172)
318 PF08182 Pedibin: Pedibin/Hym- 20.9 1.2E+02 0.0027 23.0 3.0 28 1-28 2-32 (35)
319 PF08181 DegQ: DegQ (SacQ) fam 20.7 3E+02 0.0065 21.8 5.1 26 10-35 4-29 (46)
320 PF08614 ATG16: Autophagy prot 20.7 2.3E+02 0.0051 28.6 6.1 36 6-41 133-168 (194)
321 PF07334 IFP_35_N: Interferon- 20.6 1.5E+02 0.0032 26.3 4.0 25 8-32 5-29 (76)
322 PF04350 PilO: Pilus assembly 20.2 1E+02 0.0022 28.8 3.2 38 7-44 3-43 (144)
323 PRK14155 heat shock protein Gr 20.1 2.4E+02 0.0053 29.4 6.1 40 2-41 19-58 (208)
324 PF04859 DUF641: Plant protein 20.1 2.7E+02 0.0058 27.1 6.0 46 3-48 80-125 (131)
325 PF01920 Prefoldin_2: Prefoldi 20.0 3E+02 0.0065 24.3 6.1 37 8-44 3-39 (106)
No 1
>KOG2264|consensus
Probab=100.00 E-value=2.5e-160 Score=1291.40 Aligned_cols=640 Identities=44% Similarity=0.759 Sum_probs=592.9
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCC-CCCCCCCcCccccc
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQLYPPLMIKASSLPRP-VTPSSGQCRTMSEC 79 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~~~~~P~~~~~~~~~~~-~~~~~~~~c~m~~C 79 (699)
||+||+.+|.||||+||+|+++|.||.+||++|+|||++++|++++|+|+|++|.+++|.++|+. .|++..+.|+||+|
T Consensus 105 l~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~pp~~~~~c~lhnc 184 (907)
T KOG2264|consen 105 LNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEPPSQISPCQLHNC 184 (907)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCCccccCcccchhc
Confidence 68999999999999999999999999999999999999999999999999999999999999997 77888899999999
Q ss_pred cccccCCCCCCCcEEEeCCCCCCccccccHHHHHHHHHHHhcCCCCCCCccCceEEEEeecccCcc----ccccccccCC
Q psy11113 80 FDFSRCSLTSGFPMFVYDPEKYYPAWKISLFLKSTIYQALKFNPHFTSNPKEACVFVVLIGESDVL----FSNVQDLYKL 155 (699)
Q Consensus 80 FD~sRC~~~~~fkVYVY~~~~~~~~~~~~~~~~~~i~~~l~~s~~~T~dP~eAclF~v~i~~~~~~----~~~~~~l~~l 155 (699)
||||||++|+||+||||+.+....|+.++++++++|.+++..+.|.|+||+.||++++.+++.... +.+.++|+++
T Consensus 185 fdySRCsltSgfPVYvyd~D~~~~G~~~d~~lk~~fq~t~~~n~~~ve~pd~ACiyi~lvge~q~P~~l~p~eleklysl 264 (907)
T KOG2264|consen 185 FDYSRCSLTSGFPVYVYDSDIITSGQSEDEWLKQVFQETIPNNVYLVETPDKACIYIHLVGEIQSPVVLTPAELEKLYSL 264 (907)
T ss_pred cccccccccCCceeEEeccceeecccchHHHHHHHHHHhcccceeEeeCCCccEEEEEEeccccCCCcCChHhhhhhhcC
Confidence 999999999999999999999888999999999999999999999999999999999999987654 3346779999
Q ss_pred CcccCCCCc-------------------------------ccccccCCCceecCCccCCCCCCCCCCCCCCCCCCCceEE
Q psy11113 156 PYWGNNVGT-------------------------------ELFRIRPKVDLVLPPGVGLPGGDIWNECPYLLPARRKYLL 204 (699)
Q Consensus 156 PyWn~~g~n-------------------------------~~~~frp~~Dv~iPp~~~~~~~~~~~~~~~~~p~~Rk~Ll 204 (699)
|||+.+|.| ...+||||||++++|+.+..+++.|.+++++.|.+||||+
T Consensus 265 p~w~~dg~Nhvl~Nl~r~s~~~n~lyn~~t~raivvQssf~~~q~RpgfDl~V~pv~h~~~e~~~~e~~p~vP~~RkyL~ 344 (907)
T KOG2264|consen 265 PHWRTDGFNHVLFNLGRPSDTQNLLYNFQTGRAIVVQSSFYTVQIRPGFDLPVDPVNHIAVEKNFVELTPLVPFQRKYLI 344 (907)
T ss_pred ccccCCCcceEEEEccCccccccceeEeccCceEEEeecceeeeeccCCCcccCcccccccCccceecCcccchhhheeE
Confidence 999998877 2348999999999999999999999999999999999999
Q ss_pred EeecccccccCCCCCcccccccCCCCCCCCCCcHHHHHHHhhhhcCCCCCeEEEEeccc----CCC-----C--CCCCcc
Q psy11113 205 SYQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIEASSLTKYLTTSTSDLFHFDWSCV----SSS-----D--VCYSES 273 (699)
Q Consensus 205 ~f~G~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~c~----~~~-----~--~c~~~~ 273 (699)
+|+|++....+. -+..+....++..++++....|..++++.|. +-. + .|+.+.
T Consensus 345 t~qgki~~~~ss----------------Ln~~~aF~~e~~adp~~~a~qds~i~qv~c~~t~k~Qe~~SLpewalcg~~~ 408 (907)
T KOG2264|consen 345 TLQGKIESDNSS----------------LNEFSAFSEELSADPSRRAVQDSPIVQVKCSFTCKNQENCSLPEWALCGERE 408 (907)
T ss_pred EEEeeecccccc----------------cchhhhhHHHhccCCcccccccCceEEEEEeeccccCCCCCcchhhhccchH
Confidence 999987653211 0123333445555665555556555555554 311 1 799999
Q ss_pred hhhhhcccceeeeeecCCccccccccccccCCCCcCCccccCCCCCccccchhhhhhccccccchhhHHHHHhcCceEEE
Q psy11113 274 VRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTIGIQMRLYEALKYGAVPVI 353 (699)
Q Consensus 274 ~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~s~~~s~Rl~eAL~~GCIPVI 353 (699)
.+.++|+.||||||+|+| |. | +.|.++-.||+|||+.||||||
T Consensus 409 ~RrqLlk~STF~lilpp~---------------------------------d~---r-v~S~~~~~r~~eaL~~GavPvi 451 (907)
T KOG2264|consen 409 RRRQLLKSSTFCLILPPG---------------------------------DP---R-VISEMFFQRFLEALQLGAVPVI 451 (907)
T ss_pred HHHHHhccceeEEEecCC---------------------------------Cc---c-hhhHHHHHHHHHHHhcCCeeEE
Confidence 999999999999999998 44 3 6777889999999999999999
Q ss_pred EeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCCHHHHHHHHHhhHHHHHhhhhchHHHHHHHHHHHHhhcCCCC
Q psy11113 354 VGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISDEDIVAFRHQGRQVFTRYLATLQSQMDTLVAVVRDRLGIPP 433 (699)
Q Consensus 354 is~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~e~i~~Mrrq~r~v~~~yfss~~~iv~TtL~iL~~R~~~p~ 433 (699)
++ |...|||.|.|||+++++++|.+++++++.+|+++.+.++++||||||++|++||++.+.+++|+||+||+||+||+
T Consensus 452 Lg-~~~~LPyqd~idWrraal~lPkaR~tE~HFllrs~~dsDll~mRRqGRl~wEtYls~~~~~~~tvlA~lR~rlqIP~ 530 (907)
T KOG2264|consen 452 LG-NSQLLPYQDLIDWRRAALRLPKARLTEAHFLLRSFEDSDLLEMRRQGRLFWETYLSDRHLLARTVLAALRYRLQIPT 530 (907)
T ss_pred ec-cccccchHHHHHHHHHhhhCCccccchHHHHHHhcchhhHHHHHhhhhhhHHHHhhHHHHHHHHHHHHHHHhhCCCC
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccccCCCCCCCCCccccCC--CccCCCCCCCCCCCccccccchhccccccccccCCCCCceecccCCCCC
Q psy11113 434 APVMNTKAVSVFRQDFTPLKMDPVIAEAE--PEENLGPLEPPYPSPSFWRNNTLFLSQGYEMWNTHLSPFYLYPQLPFDP 511 (699)
Q Consensus 434 ~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~lgp~~~~~~S~~~~rn~t~~~~~~~~~WN~~pg~l~~~p~~~~~~ 511 (699)
.|++..+|.++||++|.|.+.+|. ++.+ +|+.+||+||||.||+|+||||.+.+++|+.||.+++|++++|+++++|
T Consensus 531 rpvr~~~A~~~fnssf~p~gsdpn-v~~n~d~e~~lgp~Eppy~Sp~y~rNfT~~~~~~y~~WN~~~~Pfyl~p~lpfdp 609 (907)
T KOG2264|consen 531 RPVRRNQAIPLFNSSFAPKGSDPN-VQANFDDEYLLGPLEPPYESPSYARNFTEFQLYSYDFWNIIMSPFYLKPFLPFDP 609 (907)
T ss_pred cccchhhceecccccCCcCCCCCC-cccCCCcccccCCCCCCCCCchHhhhhhhhhhHHHHHhhhcCCccccCccCCCCc
Confidence 999999999999999999877765 5544 5778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCcccccCCCCCCCchhhccccCCCCCCCeEEEEEeccCcHHHHHHHHHhcCCCCccEEEEEecCCCC
Q psy11113 512 ILPSDAKFMGSDYGFRPINKGAGGSGKEFYENLGSNKQREQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQP 591 (699)
Q Consensus 512 ~lps~~~f~~~~~g~~pi~~~~~g~g~~f~~~l~~~~p~~~FT~vI~ty~R~~~L~~~l~~l~~~p~l~kIvVvWn~~~~ 591 (699)
.+|++|+|.|++.|||||++|+||+|+||+++||||.|++|||+||+||+|.+.|+..|.+|.++|||+|||||||++++
T Consensus 610 ~LPsEAkF~gs~tGFRPIg~g~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~ 689 (907)
T KOG2264|consen 610 ELPSEAKFFGSKTGFRPIGPGAGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKD 689 (907)
T ss_pred cCcchhhhhccCcCcccCCCCCCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcCEEEEeCCCCCccccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCccccccCC
Q psy11113 592 PREDLRWPDIGVPVVVVRTNTNDLNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHAWDQN 671 (699)
Q Consensus 592 pp~~~~wp~~~vpV~vi~~~~nSLnnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~wd~~ 671 (699)
|+.++.||+++|||.|++.++|||||||+|++.||||||||+|||++|.+|||.|||+||||++|||||||+|+|+||..
T Consensus 690 P~ddl~WPdigvPv~viR~~~NsLNNRFlPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiVGFPgRyHAwd~p 769 (907)
T KOG2264|consen 690 PPDDLTWPDIGVPVEVIRVAENSLNNRFLPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIVGFPGRYHAWDGP 769 (907)
T ss_pred ChhcccCcCCCCceEEEEcccccccccccCchhhhheeeeecccchhhhhhheeeeeehhhhcccccccCCcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeecccCCceeeEEecCCCcc
Q psy11113 672 NQGGWLYNSNYSCELSMAKEVINES 696 (699)
Q Consensus 672 ~~~~W~Y~s~~s~~ySMVLT~~a~~ 696 (699)
+++|.|+|+++|+.|||||++||-
T Consensus 770 -~~sw~YNSNysCelSMvLTGAAF~ 793 (907)
T KOG2264|consen 770 -HDSWFYNSNYSCELSMVLTGAAFI 793 (907)
T ss_pred -CcceeecCCcceEEeeeehhhHHH
Confidence 899999999999999999999983
No 2
>KOG1022|consensus
Probab=100.00 E-value=7.1e-80 Score=666.01 Aligned_cols=465 Identities=25% Similarity=0.358 Sum_probs=377.0
Q ss_pred CCCCCCCcCccccccccccCCCCCCCcEEEeCCCCCCcccc------ccHHHHHHHHHHHhcCCCCCCCccCceEEEEee
Q psy11113 66 VTPSSGQCRTMSECFDFSRCSLTSGFPMFVYDPEKYYPAWK------ISLFLKSTIYQALKFNPHFTSNPKEACVFVVLI 139 (699)
Q Consensus 66 ~~~~~~~~c~m~~CFD~sRC~~~~~fkVYVY~~~~~~~~~~------~~~~~~~~i~~~l~~s~~~T~dP~eAclF~v~i 139 (699)
.+....-+|+|++||++++|. ....|||+|+++++.+... ++. .|-++++|+..|.|+|.|+++||+|++.+
T Consensus 75 ~~e~g~~sc~~~dcf~~y~c~-~~~~KvyIy~l~~~vd~~s~~~~~T~s~-ey~~lleA~~~S~yyt~n~N~aclf~Ps~ 152 (691)
T KOG1022|consen 75 ASETGLPSCFLADCFLYYQCL-FFETKVYIYMLGDIVDAKSIDKGATWSP-EYIALLEAWHLSFYYTFNYNGACLFMPSS 152 (691)
T ss_pred ccccCCccceehhhhhhhhcc-ccccceeEEehhhhhhhhcccccccccH-HHHHHHHHHHhccceecCCCceEEEecch
Confidence 334466789999999999995 5789999999998775322 233 56689999999999999999999999999
Q ss_pred cccCccccc----cccccCCCcccCCCCc--------------------------------ccccccCCCceecCCccCC
Q psy11113 140 GESDVLFSN----VQDLYKLPYWGNNVGT--------------------------------ELFRIRPKVDLVLPPGVGL 183 (699)
Q Consensus 140 ~~~~~~~~~----~~~l~~lPyWn~~g~n--------------------------------~~~~frp~~Dv~iPp~~~~ 183 (699)
|++++++.. ...+.++-.|.++ -| +.+.||+|+||++| ..++
T Consensus 153 d~lnQn~l~~kl~~~ala~l~~wdrg-~nH~~fnmLpGg~p~yntaldv~~d~a~~~gggf~tW~yr~g~dv~ip-v~Sp 230 (691)
T KOG1022|consen 153 DELNQNPLSWKLEKVALAKLLVWDRG-VNHEGFNMLPGGDPTYNTALDVGQDEAWYSGGGFGTWKYRKGNDVYIP-VRSP 230 (691)
T ss_pred hhhccCcchHHHHHHHHhcccchhcc-cceeeEeeccCCCCCccccccCCcceeEEecCCcCcccccCCCccccc-cccc
Confidence 999988643 4557788899774 22 67899999999997 5554
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeecccccccCCCCCcccccccCCCCCCCCCCcHHHHHHHhhhhcCCCCCeEEEEeccc
Q psy11113 184 PGGDIWNECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIEASSLTKYLTTSTSDLFHFDWSCV 263 (699)
Q Consensus 184 ~~~~~~~~~~~~~p~~Rk~Ll~f~G~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~c~ 263 (699)
..+ ..+...+..|++++--.|.-+. ..++..+.+.+- +| +...+.+. .|.
T Consensus 231 ~~v----~~~~~~~g~r~~~l~~~q~n~~---------------------pr~r~~l~el~~---kh-~e~~l~l~-~c~ 280 (691)
T KOG1022|consen 231 GNV----GRAFLYDGSRYRVLQDCQENYG---------------------PRIRVSLIELLS---KH-EERELELP-FCL 280 (691)
T ss_pred ccc----CccccCCccceeeeeccccccc---------------------hHhHHhHHHHHh---hc-cceEEecc-hhc
Confidence 422 1234567888887755553221 123333333332 24 44456666 676
Q ss_pred CCC----CCCCC--cchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccCCCCCccccchhhhhhccccccc
Q psy11113 264 SSS----DVCYS--ESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTIGI 337 (699)
Q Consensus 264 ~~~----~~c~~--~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~s~~~ 337 (699)
+.+ .+|.. +-+|..+|...+||+. -.+ +-++
T Consensus 281 nlsl~~r~~~qhH~~~~yp~~l~~~~fc~~-~R~------------------------------------------~r~g 317 (691)
T KOG1022|consen 281 NLSLNSRGVRQHHFDVKYPSSLEFIGFCDG-DRV------------------------------------------TRGG 317 (691)
T ss_pred cccccccchhhcccccccccccceeeeEec-ccc------------------------------------------ccCC
Confidence 532 14543 3469999999999994 111 1145
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCCHHHHHHHHHhhHHHHHhhhhchHHH
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISDEDIVAFRHQGRQVFTRYLATLQSQ 417 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~e~i~~Mrrq~r~v~~~yfss~~~i 417 (699)
++-+.+-+.+||+|||+. |.+.|||++|+||..+||+++|..+..+..+|.+++...|-+|+.|.+..|.+||.+...+
T Consensus 318 q~~lv~~~~a~c~pvi~v-d~y~lpf~~Vvdw~~aSv~~~e~~~~~v~~~l~~i~~~~i~sl~~r~~~~rl~rf~~~~~~ 396 (691)
T KOG1022|consen 318 QFHLVILGYASCAPVISV-DIYLLPFLGVVDWIVASVWCMEYYAGKVMDALLNIETAGICSLQLRRIGSRLNRFPPFKRG 396 (691)
T ss_pred ccceehhhhcccceeeee-ehhhhhhhhhhhceeeeEEeehhhHHHHHHHhhcchhcchhhhhhhhhhhhHhhcchHHHH
Confidence 788999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcccccccccccCCCCCCCCCccccCCCccCCCCCCCCCCCccccccchhccccccccccCC
Q psy11113 418 MDTLVAVVRDRLGIPPAPVMNTKAVSVFRQDFTPLKMDPVIAEAEPEENLGPLEPPYPSPSFWRNNTLFLSQGYEMWNTH 497 (699)
Q Consensus 418 v~TtL~iL~~R~~~p~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~lgp~~~~~~S~~~~rn~t~~~~~~~~~WN~~ 497 (699)
+..+++.+..|+. |. .+.++..||
T Consensus 397 ~l~~~~~i~~~ll--------------------p~----------------------------------v~~s~~~w~-- 420 (691)
T KOG1022|consen 397 FLLLLSSIGKRLL--------------------PV----------------------------------VAISSRLWN-- 420 (691)
T ss_pred HHHHHHHHhhhhh--------------------he----------------------------------eeecccccc--
Confidence 9999999999984 21 234677888
Q ss_pred CCCceecccCCCCCCCCCCCcccccCCCcccccCCCCCCCchhhccccCCCCCCCeEEEEEeccCcHHHHHHHHHhcCCC
Q psy11113 498 LSPFYLYPQLPFDPILPSDAKFMGSDYGFRPINKGAGGSGKEFYENLGSNKQREQFTIIILTYERDQVLINSLSRLNNLP 577 (699)
Q Consensus 498 pg~l~~~p~~~~~~~lps~~~f~~~~~g~~pi~~~~~g~g~~f~~~l~~~~p~~~FT~vI~ty~R~~~L~~~l~~l~~~p 577 (699)
++..+.+. |++.+|.... ....++||++|+||+|.+.|+++|+|+++||
T Consensus 421 ~~~~~~~s-----------------------------~s~~~~~~~i--k~~~qgFTlim~TYdR~d~L~k~v~~ys~vP 469 (691)
T KOG1022|consen 421 VGVRYIYS-----------------------------GSNPLFLPPI--KGHSQGFTLIMLTYDRVDLLKKLVKHYSRVP 469 (691)
T ss_pred ccceeccc-----------------------------CCCccccCCC--CCcccceeeeeehHHHHHHHHHHHHHHhhCC
Confidence 33322211 1222221111 2246789999999999999999999999999
Q ss_pred CccEEEEEecCC-CCCCCCCCCCCCCcCEEEEeCCCCCccccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 578 YLNKVVVVWNSV-QPPREDLRWPDIGVPVVVVRTNTNDLNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 578 ~l~kIvVvWn~~-~~pp~~~~wp~~~vpV~vi~~~~nSLnnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
+|+||+|||||+ +.||+++.||.++|||++++++.|+|||||.|+++|||+|||++||||+++||||+|||+|||||||
T Consensus 470 sL~kIlVVWNnq~k~PP~es~~~~~~VPlr~r~qkeNsLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD 549 (691)
T KOG1022|consen 470 SLKKILVVWNNQGKNPPPESLEPDIAVPLRFRQQKENSLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPD 549 (691)
T ss_pred CcceEEEEecCCCCCCChhhccccCCccEEEEehhhhhhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCcc
Confidence 999999999997 5578888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCccccccCCCCCCeeecccCCceeeEEecCCCcc
Q psy11113 657 RIVGFPGRYHAWDQNNQGGWLYNSNYSCELSMAKEVINES 696 (699)
Q Consensus 657 RiVGF~~R~H~wd~~~~~~W~Y~s~~s~~ySMVLT~~a~~ 696 (699)
|||||++|.|.|+.+ ...|.|.++|+++||||||++||-
T Consensus 550 ~lVGF~pR~H~~t~s-~~k~~y~sewt~qySMVLtGAAFf 588 (691)
T KOG1022|consen 550 RLVGFVPRFHVWTMS-YSKWKYESEWTNQYSMVLTGAAFF 588 (691)
T ss_pred ceeccCcceeecccc-cchhhheeecCCceEEEEechhHH
Confidence 999999999999987 788999999999999999999983
No 3
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=100.00 E-value=1.1e-44 Score=373.75 Aligned_cols=143 Identities=51% Similarity=0.876 Sum_probs=120.8
Q ss_pred eEEEEEe-ccCcHHHHHHHHHhcCCCCccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCCccccCCCCCCCCccEEE
Q psy11113 553 FTIIILT-YERDQVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTNDLNNRFKPYDVIETEAVL 631 (699)
Q Consensus 553 FT~vI~t-y~R~~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nSLnnRF~P~~~I~TeAVL 631 (699)
|||||+| |+|.+.|.++|++|+++|+|+||+||||++++||+...|+..++||++++.++|||||||+|+++|+|+|||
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~~i~T~AVl 80 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDPEIETDAVL 80 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--TT--SSEEE
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCccccCcceEE
Confidence 8999999 999999999999999999999999999998888877889999999999999999999999999999999999
Q ss_pred EecCCcccCHHHHHHHHHHHHhcCCCccccCCccccccCCCCCCeeecccCCceeeEEecCCCcc
Q psy11113 632 NMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHAWDQNNQGGWLYNSNYSCELSMAKEVINES 696 (699)
Q Consensus 632 slDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~wd~~~~~~W~Y~s~~s~~ySMVLT~~a~~ 696 (699)
++|||+.++++||+|||++||+||||||||++|+|.||.. +|.|.|+++|+++|||||||+||.
T Consensus 81 ~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~-~~~~~Y~~~~~~~ySmvLt~aaf~ 144 (247)
T PF09258_consen 81 SLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPS-SGRWKYTSEWSNEYSMVLTGAAFY 144 (247)
T ss_dssp EEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-E-TTEEEEE-SSS--BSEE-TTEEEE
T ss_pred EecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCC-ccccccccCCCCcchhhhhhhHhh
Confidence 9999999999999999999999999999999999999987 899999999999999999999984
No 4
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=100.00 E-value=2.4e-40 Score=343.24 Aligned_cols=234 Identities=34% Similarity=0.519 Sum_probs=173.0
Q ss_pred CCCcEEEeCCC-CCCc------------ccccc-HHHHHHHHHHHhcCCCCCCCccCceEEEEeecccCc------cc--
Q psy11113 89 SGFPMFVYDPE-KYYP------------AWKIS-LFLKSTIYQALKFNPHFTSNPKEACVFVVLIGESDV------LF-- 146 (699)
Q Consensus 89 ~~fkVYVY~~~-~~~~------------~~~~~-~~~~~~i~~~l~~s~~~T~dP~eAclF~v~i~~~~~------~~-- 146 (699)
.++||||||++ +++. ..... ..+...|+++|+.|+++|.||+|||+||||++.... ..
T Consensus 3 ~~lkVYVY~lp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~l~~s~~~T~dp~eAdlF~vP~~~~~~~~~~~~~~~~ 82 (302)
T PF03016_consen 3 RGLKVYVYPLPPKFNKDLLDPREDEQCSWYETSQYALEVILHEALLNSPFRTDDPEEADLFFVPFYSSCYFHHWWGSPNS 82 (302)
T ss_pred CCCEEEEEeCCccccccceeccccccCCCcccccchHHHHHHHHHHhCCcEeCCHHHCeEEEEEcccccccccccCCccc
Confidence 48999999988 2220 00011 112336888999999999999999999999998654 10
Q ss_pred ---c-----c-cccccCCCcccCCCC-c----------------------------------ccccccCCCceecCCccC
Q psy11113 147 ---S-----N-VQDLYKLPYWGNNVG-T----------------------------------ELFRIRPKVDLVLPPGVG 182 (699)
Q Consensus 147 ---~-----~-~~~l~~lPyWn~~g~-n----------------------------------~~~~frp~~Dv~iPp~~~ 182 (699)
. . ...+.++||||+++| | ...+|||++||++|+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~w~r~~G~dH~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~P~~~~ 162 (302)
T PF03016_consen 83 GADRDSLSDALRHLLASYPYWNRSGGRDHFFVNSHDRGGCSFDRNPRLMNNSIRAVVAFSSFSSSCFRPGFDIVIPPFVP 162 (302)
T ss_pred hhhHHHHHHHHHHHHhcCchhhccCCCCeEEEeccccccccccccHhhhccchhheeccCCCCcCcccCCCCeecccccc
Confidence 0 1 355678999998543 3 257999999999997665
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEeecccccccCCCCCcccccccCCCCCCCCCCcHHHHHHHhhhhcCCCCCeEEEEecc
Q psy11113 183 LPGGDIWNECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIEASSLTKYLTTSTSDLFHFDWSC 262 (699)
Q Consensus 183 ~~~~~~~~~~~~~~p~~Rk~Ll~f~G~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d~~~~~~~c 262 (699)
......+.......+.+|++|++|+|..+.... ..+..+|..++..+++ ..|.. |
T Consensus 163 ~~~~~~~~~~~~~~~~~R~~l~~f~g~~~~~~~---------------~~~~~~r~~l~~~~~~-----~~~~~-----~ 217 (302)
T PF03016_consen 163 PSSLPDWRPWPQRPPARRPYLLFFAGTIRPSSN---------------DYSGGVRQRLLDECKS-----DPDFR-----C 217 (302)
T ss_pred ccccCCccccccCCccCCceEEEEeeecccccc---------------ccchhhhhHHHHhccc-----CCcce-----e
Confidence 544344443355678999999999998754211 0223677777777753 23321 1
Q ss_pred cCCCCCCCCcchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccCCCCCccccchhhhhhccccccchhhHH
Q psy11113 263 VSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTIGIQMRLY 342 (699)
Q Consensus 263 ~~~~~~c~~~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~s~~~s~Rl~ 342 (699)
......|....+|.+.|++||||| +|.| ++ .++.||+
T Consensus 218 ~~~~~~~~~~~~~~~~l~~S~FCL-~p~G---------------------------------~~---------~~s~Rl~ 254 (302)
T PF03016_consen 218 SDGSETCPSPSEYMELLRNSKFCL-CPRG---------------------------------DG---------PWSRRLY 254 (302)
T ss_pred eecccccccchHHHHhcccCeEEE-ECCC---------------------------------CC---------cccchHH
Confidence 111224555677999999999999 5887 22 1489999
Q ss_pred HHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC
Q psy11113 343 EALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI 391 (699)
Q Consensus 343 eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si 391 (699)
|||++|||||||+ |+++|||+|+|||++|+|+|+++++++|++||++|
T Consensus 255 eal~~GcIPVii~-d~~~lPf~~~ldw~~fsv~v~~~~~~~l~~iL~~i 302 (302)
T PF03016_consen 255 EALAAGCIPVIIS-DDYVLPFEDVLDWSRFSVRVPEADLPELPEILRSI 302 (302)
T ss_pred HHhhhceeeEEec-CcccCCcccccCHHHEEEEECHHHHHHHHHHHhcC
Confidence 9999999999999 99999999999999999999999999999999986
No 5
>KOG1021|consensus
Probab=100.00 E-value=2.1e-32 Score=304.96 Aligned_cols=274 Identities=24% Similarity=0.337 Sum_probs=204.2
Q ss_pred cCCC---CCCCcEEEeCCCCCC---c-cccccHHHHH---HHHHHH--hcCCCCCCCccCceEEEEeecccC--------
Q psy11113 84 RCSL---TSGFPMFVYDPEKYY---P-AWKISLFLKS---TIYQAL--KFNPHFTSNPKEACVFVVLIGESD-------- 143 (699)
Q Consensus 84 RC~~---~~~fkVYVY~~~~~~---~-~~~~~~~~~~---~i~~~l--~~s~~~T~dP~eAclF~v~i~~~~-------- 143 (699)
.|+. ...+|||+|..+..+ . +|.... +|. .+.+.+ ..++++|.||+||++||||++...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~E~~~~~~~~~~~~~~Rt~dp~~Ad~f~vPf~~~~~~~~~~~~ 183 (464)
T KOG1021|consen 105 MCSYKLNEKRGKVYVYHEGNKPLFHTPSWCLTD-QYASEGIFHNRMLRRESAFRTLDPLEADAFYVPFYASLDYNRALLW 183 (464)
T ss_pred hhhhhhhcccCceEEecCCCCccccCCCccccc-chhHHHHHHHHHhcccCceecCChhhCcEEEEcceeeEehhhhccc
Confidence 5554 357999999887322 1 232222 122 345555 578999999999999999998742
Q ss_pred cc---c---c----c--cccccCCCcccCCCCc----------------------------------ccccccCC-Ccee
Q psy11113 144 VL---F---S----N--VQDLYKLPYWGNNVGT----------------------------------ELFRIRPK-VDLV 176 (699)
Q Consensus 144 ~~---~---~----~--~~~l~~lPyWn~~g~n----------------------------------~~~~frp~-~Dv~ 176 (699)
.+ . . + +.+++++||||+++|. ....|.+. +|++
T Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~ 263 (464)
T KOG1021|consen 184 PDERVNAILRSILQDYIVALLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVA 263 (464)
T ss_pred CCcccchHHHHHHHHHHHHHHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCccc
Confidence 11 0 0 1 3446799999998665 23457778 9999
Q ss_pred cCCccCCCCCCCC---CCCCCCCCCCCceEEEeecccccccCCCCCcccccccCCCCCCCCCCcHHHHHHHhhhhcCCCC
Q psy11113 177 LPPGVGLPGGDIW---NECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIEASSLTKYLTTSTS 253 (699)
Q Consensus 177 iPp~~~~~~~~~~---~~~~~~~p~~Rk~Ll~f~G~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (699)
|| .+..+.+..- ..+......+|++|++|+|+. .+ | .+|+.++.+|++ ..
T Consensus 264 iP-~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~--~~----~---------------~iR~~L~~~~~~-----~~ 316 (464)
T KOG1021|consen 264 IP-YPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAP--AG----G---------------QIRSILLDLWKK-----DP 316 (464)
T ss_pred CC-CccCcCccCccccccccCCCCCCCceEEEEeccc--cC----C---------------cHHHHHHHHhhc-----Cc
Confidence 98 4432221111 233455568999999999974 11 2 788999999975 23
Q ss_pred CeEEEEecccCCCCCCCCcchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccCCCCCccccchhhhhhccc
Q psy11113 254 DLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYAS 333 (699)
Q Consensus 254 d~~~~~~~c~~~~~~c~~~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 333 (699)
+.... ..|..+...|.....|.+.|++|+||| +|+| +. +
T Consensus 317 ~~~~~-~~~~~g~~~~~~~~~y~~~m~~S~FCL-~p~G---------------------------------d~-----~- 355 (464)
T KOG1021|consen 317 DTEVF-VNCPRGKVSCDRPLNYMEGMQDSKFCL-CPPG---------------------------------DT-----P- 355 (464)
T ss_pred Ccccc-ccCCCCccccCCcchHHHHhhcCeEEE-CCCC---------------------------------CC-----c-
Confidence 33332 378877667888889999999999999 8998 21 1
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHH-HHHHhcCCHHHHHHHHHhhHHHHHh--h
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPEL-HLLLRSISDEDIVAFRHQGRQVFTR--Y 410 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L-~~iL~sis~e~i~~Mrrq~r~v~~~--y 410 (699)
++.|++|||.+|||||||+ |++.|||++++||++|||+|++++++++ .++|.+|+.+++.+||+++.....+ +
T Consensus 356 ---ts~R~fdai~~gCvPViis-d~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~ 431 (464)
T KOG1021|consen 356 ---TSPRLFDAIVSGCVPVIIS-DGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLVPRHFL 431 (464)
T ss_pred ---ccHhHHHHHHhCCccEEEc-CCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHHhhEE
Confidence 4899999999999999999 9999999999999999999999999998 9999999999999999999854443 2
Q ss_pred hhc-----hHHHHHHHHHHHHhhcC
Q psy11113 411 LAT-----LQSQMDTLVAVVRDRLG 430 (699)
Q Consensus 411 fss-----~~~iv~TtL~iL~~R~~ 430 (699)
+.+ .+++++.++..+..|+.
T Consensus 432 ~~~~~~~~~~da~~~~~~~v~~r~~ 456 (464)
T KOG1021|consen 432 KKPPGPPKRGDAFHMILHSLWRRLH 456 (464)
T ss_pred eCCCCCCCcchhHHHHHhhhhhccc
Confidence 222 46899999999888875
No 6
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=96.36 E-value=0.0089 Score=65.53 Aligned_cols=154 Identities=18% Similarity=0.260 Sum_probs=67.1
Q ss_pred cccccccCCCceecCCccCCCCCCCCC---CCCCCCCCCCceEEEeecccccccCCCCCcccccccCCCCCCCCCCcHHH
Q psy11113 164 TELFRIRPKVDLVLPPGVGLPGGDIWN---ECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIE 240 (699)
Q Consensus 164 n~~~~frp~~Dv~iPp~~~~~~~~~~~---~~~~~~p~~Rk~Ll~f~G~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 240 (699)
|..-+||..=||.+| ........... ........+++..+.+...... .+.|..+
T Consensus 137 N~TMTYr~dSDi~~p-y~~~~~~~~~~~~~~~~~~~~~K~~~~~w~~Snc~~---------------------~~~R~~~ 194 (349)
T PF00852_consen 137 NWTMTYRRDSDIPLP-YGYFSPRESPSEKDDLPNILKKKTKLAAWIVSNCNP---------------------HSGREEY 194 (349)
T ss_dssp -------------------------------------TSSEEEEE--S-S-----------------------H-HHHHH
T ss_pred ccccccccccccccc-cccccccccccccccccccccCCCceEEEEeeCcCC---------------------cccHHHH
Confidence 356789999999997 33322211111 1122223333444445543211 0236777
Q ss_pred HHHHhhhhcCCCCCeEEEEecccCCCCCCCCcchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccCCCCCc
Q psy11113 241 ASSLTKYLTTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDE 320 (699)
Q Consensus 241 ~~~l~~~~~~~~~d~~~~~~~c~~~~~~c~~~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 320 (699)
+..|.++ -++=..+ .|... .+.......+++++-+|.|..--. +.+.
T Consensus 195 ~~~L~~~-----~~vd~yG-~c~~~--~~~~~~~~~~~~~~ykF~lafENs-------------------------~c~d 241 (349)
T PF00852_consen 195 VRELSKY-----IPVDSYG-KCGNN--NPCPRDCKLELLSKYKFYLAFENS-------------------------NCPD 241 (349)
T ss_dssp HHHHHTT-----S-EEE-S-STT----SSS--S-HHHHHHTEEEEEEE-SS---------------------------TT
T ss_pred HHHHHhh-----cCeEccC-CCCCC--CCcccccccccccCcEEEEEecCC-------------------------CCCC
Confidence 8888763 2222233 67211 222233488999999999953221 1111
Q ss_pred cccchhhhhhccccccchhhHHHHHhcCceEEEEe--CCCcc--CCcccccCCcceEEeccCCCHHHHHHHHhcCCH
Q psy11113 321 ETVEDDRAERYASTIGIQMRLYEALKYGAVPVIVG--GDNVM--LPFEEVLDWNKILIPLPVARIPELHLLLRSISD 393 (699)
Q Consensus 321 ~~~~~~~~~~~~~s~~~s~Rl~eAL~~GCIPVIis--~d~~~--LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~ 393 (699)
+ ++-.|++|+.+|||||+++ +.++. +|=...|+.++| +...+|.+.|+.+..
T Consensus 242 ----------Y-----iTEK~~~al~~g~VPI~~G~~~~~~~~~~P~~SfI~~~df------~s~~~La~yl~~l~~ 297 (349)
T PF00852_consen 242 ----------Y-----ITEKFWNALLAGTVPIYWGPPRPNYEEFAPPNSFIHVDDF------KSPKELADYLKYLDK 297 (349)
T ss_dssp ------------------HHHHHHHHTTSEEEEES---TTHHHHS-GGGSEEGGGS------SSHHHHHHHHHHHHT
T ss_pred ----------C-----CCHHHHHHHHCCeEEEEECCEecccccCCCCCCccchhcC------CCHHHHHHHHHHHhc
Confidence 1 3678999999999999999 66553 777888888877 356778887777743
No 7
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=95.88 E-value=0.042 Score=55.59 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=60.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++||+++|| |||.+ |. -.+.+++.-....+.++..+..++.+.|..+ .++...+|.++++....+.|+ .
T Consensus 288 ~~~~~~Ea~~~g~-pvI~~-~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 362 (374)
T cd03801 288 FGLVLLEAMAAGL-PVVAS-DV--GGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFS-W 362 (374)
T ss_pred ccchHHHHHHcCC-cEEEe-CC--CChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcC-H
Confidence 3567999999997 67776 54 4466777777888888888888877766653 456678888888866666664 5
Q ss_pred HHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVV 425 (699)
Q Consensus 415 ~~iv~TtL~iL 425 (699)
+.+++..++++
T Consensus 363 ~~~~~~~~~~~ 373 (374)
T cd03801 363 DRVAARTEEVY 373 (374)
T ss_pred HHHHHHHHHhh
Confidence 56776666654
No 8
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.47 E-value=0.26 Score=52.78 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=58.6
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++|| |||.+ |.- ...|++.-....+.++..+..++.+.|..+ .++...+|.++++..-...|+ .
T Consensus 285 ~~~~~lEAma~G~-Pvv~s-~~~--g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs-~ 359 (374)
T TIGR03088 285 ISNTILEAMASGL-PVIAT-AVG--GNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFS-I 359 (374)
T ss_pred CchHHHHHHHcCC-CEEEc-CCC--CcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC-H
Confidence 4567999999996 99998 743 345777666677788888888777655543 355677788888766666565 3
Q ss_pred HHHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVVR 426 (699)
Q Consensus 415 ~~iv~TtL~iL~ 426 (699)
+.++...+++.+
T Consensus 360 ~~~~~~~~~~y~ 371 (374)
T TIGR03088 360 NAMVAAYAGLYD 371 (374)
T ss_pred HHHHHHHHHHHH
Confidence 456666655543
No 9
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=95.00 E-value=0.062 Score=52.07 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=73.4
Q ss_pred CeEEEEEeccCc-HHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC--C-CCCCCCcCEEEEeCCCCC-----ccccCCC
Q psy11113 552 QFTIIILTYERD-QVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED--L-RWPDIGVPVVVVRTNTND-----LNNRFKP 621 (699)
Q Consensus 552 ~FT~vI~ty~R~-~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~--~-~wp~~~vpV~vi~~~~nS-----LnnRF~P 621 (699)
.+|+||.+|++. +.|.+.|+.+.+..+- -+|+||.++...+... . .+......++++..+.|. +|.-+
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~-- 79 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSAL-- 79 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHH--
Confidence 479999999999 9999999999765443 3899998876442111 0 011112346666555441 22222
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccC
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFP 662 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~ 662 (699)
....+|-|+.+|+|..+..+-|+-..+....+|+--+.+.
T Consensus 80 -~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~ 119 (202)
T cd04184 80 -ELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYS 119 (202)
T ss_pred -HhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEc
Confidence 2457899999999999999999999999966665433333
No 10
>KOG1021|consensus
Probab=94.82 E-value=0.0071 Score=68.82 Aligned_cols=65 Identities=12% Similarity=-0.130 Sum_probs=59.9
Q ss_pred cccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCccccccCCCCCCeeecccCCceeeEEec
Q psy11113 616 NNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHAWDQNNQGGWLYNSNYSCELSMAKE 691 (699)
Q Consensus 616 nnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~wd~~~~~~W~Y~s~~s~~ySMVLT 691 (699)
..|+.+|.++.++++|+|+-.-......-.|...+|.-.|-.|.++ - ...|.+..+|+ +|||+++
T Consensus 331 ~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~---------~-~lpf~~~~d~~-~fSV~v~ 395 (464)
T KOG1021|consen 331 CDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDG---------I-QLPFGDVLDWT-EFSVFVP 395 (464)
T ss_pred cCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCC---------c-ccCcCCCccce-EEEEEEE
Confidence 5889999999999999999999888888999999999999999998 1 57799999999 9999998
No 11
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.75 E-value=0.0046 Score=56.64 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=76.7
Q ss_pred EEEEEeccCcHHHHHHHHHhcCC-CCccEEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCCC--ccccCCCCCCCCcc
Q psy11113 554 TIIILTYERDQVLINSLSRLNNL-PYLNKVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTND--LNNRFKPYDVIETE 628 (699)
Q Consensus 554 T~vI~ty~R~~~L~~~l~~l~~~-p~l~kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~nS--LnnRF~P~~~I~Te 628 (699)
|+||-||++.+.|.++|+.+.+. ..-.+|+||-|+...-... ..+-+...+++++..+.|. -.++-.=.....++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~ 80 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHAKGE 80 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH--SS
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccccccccccccccccccccccccccccccccee
Confidence 68999999999999999998764 7778999998877321110 0111235789999888772 11122223347888
Q ss_pred EEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCc
Q psy11113 629 AVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGR 664 (699)
Q Consensus 629 AVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R 664 (699)
-|+.+|||..+..+-|+-.++...+++.-+|+....
T Consensus 81 ~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 81 YILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp EEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred EEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 999999999999999999999999987766665444
No 12
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.64 E-value=0.17 Score=52.26 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=55.8
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++|||++|| |||.+ |.- .+.+++.=....+.++..+..++.+.+..+ .++...+|.++++...+. | +.
T Consensus 279 ~~~~~lEa~a~g~-PvI~~-~~~--~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~-~-~~ 352 (364)
T cd03814 279 FGLVVLEAMASGL-PVVAP-DAG--GPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAER-R-SW 352 (364)
T ss_pred CCcHHHHHHHcCC-CEEEc-CCC--CchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhh-c-CH
Confidence 3567999999999 78887 643 345666545677777887877666554443 467788888888776544 2 34
Q ss_pred HHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVV 425 (699)
Q Consensus 415 ~~iv~TtL~iL 425 (699)
+.+++.+++++
T Consensus 353 ~~~~~~~~~~~ 363 (364)
T cd03814 353 EAFLDNLLEAY 363 (364)
T ss_pred HHHHHHHHHhh
Confidence 56666666554
No 13
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=94.52 E-value=0.12 Score=54.04 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=55.9
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHh-c--CCHHHHHHHHHhhHHHHHhhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLR-S--ISDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~-s--is~e~i~~Mrrq~r~v~~~yfs 412 (699)
+.-++|||++|| |||++ |. -+..+++.-....+.++..+..++.+.|. . ..+++..+|+++++...+..|+
T Consensus 278 ~~~l~EA~a~G~-PvI~~-~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~ 351 (355)
T cd03819 278 GRTAVEAQAMGR-PVIAS-DH--GGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFS 351 (355)
T ss_pred chHHHHHHhcCC-CEEEc-CC--CCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhh
Confidence 456899999999 88887 63 45677887777778888889988877663 3 3678889999999988888776
No 14
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=94.22 E-value=0.16 Score=52.65 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=55.6
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC-C-HHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI-S-DEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si-s-~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++|||++|| |||.+ |.-- .+++.+- ...+.++..+..++.+.|..+ . ++...+|+++++...+. | +.
T Consensus 282 ~~~~~~Ea~a~G~-PvI~~-~~~~--~~~i~~~-~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~-s~ 354 (366)
T cd03822 282 QSGVLAYAIGFGK-PVIST-PVGH--AEEVLDG-GTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARA-M-SW 354 (366)
T ss_pred cchHHHHHHHcCC-CEEec-CCCC--hheeeeC-CCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-C-CH
Confidence 3566999999999 99988 6432 4445453 445667777777777665543 2 36788899999877776 3 45
Q ss_pred HHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVV 425 (699)
Q Consensus 415 ~~iv~TtL~iL 425 (699)
++++...++++
T Consensus 355 ~~~~~~~~~~~ 365 (366)
T cd03822 355 ERVAERYLRLL 365 (366)
T ss_pred HHHHHHHHHHh
Confidence 66766666554
No 15
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.15 E-value=0.32 Score=51.41 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=58.2
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhchH
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATLQ 415 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~~ 415 (699)
+.-++|||++| +|||.+ |.- ...|++.-....+.++..+..++.+.+..+ .++...+|+++++......|+ .+
T Consensus 284 ~~~~~EAma~g-~PvI~s-~~~--~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs-~~ 358 (371)
T cd04962 284 GLAALEAMACG-VPVVAS-NAG--GIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFD-SE 358 (371)
T ss_pred ccHHHHHHHcC-CCEEEe-CCC--CchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC-HH
Confidence 55689999999 788888 654 345777666666778888888777655443 467788999998876555555 34
Q ss_pred HHHHHHHHHHH
Q psy11113 416 SQMDTLVAVVR 426 (699)
Q Consensus 416 ~iv~TtL~iL~ 426 (699)
.+++-.++.++
T Consensus 359 ~~~~~~~~~y~ 369 (371)
T cd04962 359 RIVPQYEALYR 369 (371)
T ss_pred HHHHHHHHHHH
Confidence 55565555543
No 16
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=93.29 E-value=0.15 Score=48.37 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=41.0
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCCH--HHHHHHHHhhH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISD--EDIVAFRHQGR 404 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~--e~i~~Mrrq~r 404 (699)
++.-++|||.+|| |||++ | .-.+.+++.=..-.+.++..++.++.+.+..+-. +....|+++++
T Consensus 105 ~~~~~~Ea~~~g~-pvI~~-~--~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~ 170 (172)
T PF00534_consen 105 FGLSLLEAMACGC-PVIAS-D--IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGKNAR 170 (172)
T ss_dssp S-HHHHHHHHTT--EEEEE-S--STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-ceeec-c--ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 4667999999999 67777 6 2344555543335566666688887776665543 44677777765
No 17
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=93.21 E-value=0.35 Score=49.74 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=56.1
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++|||++| +|||.+ +. -...++++-....+.++..+..++.+.+..+ .++...+|+++++...+.
T Consensus 276 ~~~~~~Ea~a~G-~Pvi~~-~~--~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~----- 346 (359)
T cd03823 276 FPLVIREALAAG-VPVIAS-DI--GGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI----- 346 (359)
T ss_pred CChHHHHHHHCC-CCEEEC-CC--CCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH-----
Confidence 456799999999 677777 53 2356778777778888888887766654433 466778888887655443
Q ss_pred HHHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVVR 426 (699)
Q Consensus 415 ~~iv~TtL~iL~ 426 (699)
++++..++++++
T Consensus 347 ~~~~~~~~~~~~ 358 (359)
T cd03823 347 EDQAEEYLKLYR 358 (359)
T ss_pred HHHHHHHHHHhh
Confidence 556666666553
No 18
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=93.17 E-value=0.37 Score=48.76 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=47.3
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~ 409 (699)
++..++|||++||.. |.+ |....+ +++++-....+.++..++.++.+.+..+ .++...+|.++++..-+.
T Consensus 265 ~~~~~~Ea~a~G~Pv-i~~-~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~ 336 (348)
T cd03820 265 FPMVLLEAMAFGLPV-ISF-DCPTGP-SEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAER 336 (348)
T ss_pred cCHHHHHHHHcCCCE-EEe-cCCCch-HhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 356699999999865 455 432222 3555555677788888887777665554 467778888888655444
No 19
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=92.90 E-value=0.45 Score=48.63 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=53.1
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++|| |||.+ |.-. ..+++.= ..+.++..+..++.+.+..+ .++...+|.++++...+.+|+ .
T Consensus 281 ~~~~~~Ea~a~g~-PvI~~-~~~~--~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s-~ 353 (365)
T cd03807 281 FPNVLLEAMACGL-PVVAT-DVGD--NAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFS-I 353 (365)
T ss_pred CCcHHHHHHhcCC-CEEEc-CCCC--hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-H
Confidence 3567999999996 78887 5322 2344322 55667777777766655443 246778888888877777665 4
Q ss_pred HHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVV 425 (699)
Q Consensus 415 ~~iv~TtL~iL 425 (699)
+.++...+++.
T Consensus 354 ~~~~~~~~~~y 364 (365)
T cd03807 354 EAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHh
Confidence 56666665543
No 20
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=92.71 E-value=0.49 Score=52.59 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=62.3
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC---CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI---SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si---s~e~i~~Mrrq~r~v~~~yfss 413 (699)
+..-++|||++|| |||.+ |.--. .|+|.=..-.+.++..+..++.+.+..+ .++...+|.++++...+..|+
T Consensus 317 ~p~~llEAma~G~-PVI~t-~~~g~--~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~- 391 (406)
T PRK15427 317 IPVALMEAMAVGI-PVVST-LHSGI--PELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFN- 391 (406)
T ss_pred ccHHHHHHHhCCC-CEEEe-CCCCc--hhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-
Confidence 4567999999995 99998 64333 4677555667788888998887766554 567789999999987777775
Q ss_pred hHHHHHHHHHHHH
Q psy11113 414 LQSQMDTLVAVVR 426 (699)
Q Consensus 414 ~~~iv~TtL~iL~ 426 (699)
.+.+...+.++++
T Consensus 392 ~~~~~~~l~~~~~ 404 (406)
T PRK15427 392 QQVINRELASLLQ 404 (406)
T ss_pred HHHHHHHHHHHHh
Confidence 4566666666654
No 21
>PRK10307 putative glycosyl transferase; Provisional
Probab=92.71 E-value=0.83 Score=50.07 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=61.1
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhchH
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATLQ 415 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~~ 415 (699)
...++|||++| +|||.+ +.--..+.+++. ...+.++..+..++.+.|..+ .++...+|+++++...+..|+- +
T Consensus 321 p~kl~eama~G-~PVi~s-~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~-~ 395 (412)
T PRK10307 321 PSKLTNMLASG-RNVVAT-AEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDK-E 395 (412)
T ss_pred cHHHHHHHHcC-CCEEEE-eCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH-H
Confidence 34589999999 688888 533233457777 467788888888888877655 3566789999998777766664 5
Q ss_pred HHHHHHHHHHHh
Q psy11113 416 SQMDTLVAVVRD 427 (699)
Q Consensus 416 ~iv~TtL~iL~~ 427 (699)
.+++..+++++.
T Consensus 396 ~~~~~~~~~~~~ 407 (412)
T PRK10307 396 NVLRQFIADIRG 407 (412)
T ss_pred HHHHHHHHHHHH
Confidence 677777776664
No 22
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=92.67 E-value=0.38 Score=49.52 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=49.8
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
...++|||++|| |||.+ |.-. ..+.+.=....+.++..+..++.+.|..+ .+++..+|.++++......|+
T Consensus 313 p~~~~Ea~~~G~-pvi~~-~~~~--~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s 385 (394)
T cd03794 313 PSKLFEYMAAGK-PVLAS-VDGE--SAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFS 385 (394)
T ss_pred chHHHHHHHCCC-cEEEe-cCCC--chhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhc
Confidence 556899999997 88887 5432 23333322566777777888877766655 677788999998877765554
No 23
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=92.53 E-value=0.77 Score=49.85 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=57.6
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++|| |||.+ +.- ...++|.=....+.++..+..++.+.+..+ .++...+|+++++...++ | +.
T Consensus 315 ~g~~~lEAma~G~-Pvi~~-~~~--~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~-f-sw 388 (405)
T TIGR03449 315 FGLVAMEAQACGT-PVVAA-RVG--GLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAG-F-SW 388 (405)
T ss_pred cChHHHHHHHcCC-CEEEe-cCC--CcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHh-C-CH
Confidence 3566999999996 88888 642 234666544566778888887776554432 355678898888876555 3 55
Q ss_pred HHHHHHHHHHHHh
Q psy11113 415 QSQMDTLVAVVRD 427 (699)
Q Consensus 415 ~~iv~TtL~iL~~ 427 (699)
+.++..++++...
T Consensus 389 ~~~~~~~~~~y~~ 401 (405)
T TIGR03449 389 AATADGLLSSYRD 401 (405)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777776654
No 24
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=92.51 E-value=0.36 Score=49.18 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=52.0
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC-CHHHHHHHHHhhHHHHHhhhhchH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI-SDEDIVAFRHQGRQVFTRYLATLQ 415 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si-s~e~i~~Mrrq~r~v~~~yfss~~ 415 (699)
++..++||+++|| |||.+ +.- ...+++.-....+.+...+..++.+.|..+ .+.+. +|.++++......|+ .+
T Consensus 291 ~~~~~~Ea~~~G~-pvI~~-~~~--~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~~s-~~ 364 (377)
T cd03798 291 FGLVLLEAMACGL-PVVAT-DVG--GIPEIITDGENGLLVPPGDPEALAEAILRLLADPWL-RLGRAARRRVAERFS-WE 364 (377)
T ss_pred CChHHHHHHhcCC-CEEEe-cCC--ChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHH-HHhHHHHHHHHHHhh-HH
Confidence 4567999999999 67777 532 245666666666778888888766655443 33333 666666666666554 33
Q ss_pred HHHHHHHHHH
Q psy11113 416 SQMDTLVAVV 425 (699)
Q Consensus 416 ~iv~TtL~iL 425 (699)
......++++
T Consensus 365 ~~~~~~~~~~ 374 (377)
T cd03798 365 NVAERLLELY 374 (377)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 25
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.42 E-value=0.27 Score=45.36 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=64.2
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCC--CccccCCCCCCCCccEEE
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTN--DLNNRFKPYDVIETEAVL 631 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~n--SLnnRF~P~~~I~TeAVL 631 (699)
+||.+|++.+.|.++|+.+...... .+|+| ..+..........-.....++++..+.| .-.+|-.-.....++-|+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~ 79 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVL 79 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhCCCCEEE
Confidence 4788999999999999999865433 34444 4444332211101111224666665544 112222223446899999
Q ss_pred EecCCcccCHHHHHHHHHHHHhcCCCcc
Q psy11113 632 NMDDDVYLRHDEIMFAFRVWREQRDRIV 659 (699)
Q Consensus 632 slDDDi~l~~del~FaF~vWr~~PdRiV 659 (699)
.+|||..++.+-++-..+.-.++++-.+
T Consensus 80 ~~D~D~~~~~~~l~~~~~~~~~~~~~~~ 107 (166)
T cd04186 80 LLNPDTVVEPGALLELLDAAEQDPDVGI 107 (166)
T ss_pred EECCCcEECccHHHHHHHHHHhCCCceE
Confidence 9999999999888877776566776533
No 26
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=92.37 E-value=0.62 Score=50.87 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=52.7
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
+.-++|||++|| |||.+ |.- +..|+|.=....+.++..+..++.+.+..+ .++...+|.++++...+.+|+
T Consensus 314 ~~~llEAmA~G~-PVIas-~~~--g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs 386 (396)
T cd03818 314 SWSLLEAMACGC-LVVGS-DTA--PVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDL 386 (396)
T ss_pred chHHHHHHHCCC-CEEEc-CCC--CchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcc
Confidence 456899999999 88887 642 566888766778888888887766544332 356678899999887777776
No 27
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=91.85 E-value=0.83 Score=51.41 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=55.2
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCC---cceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDW---NKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYL 411 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW---~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yf 411 (699)
++.-++|||++| +|||.+ |.- ...|+++= ....+.++..+..++.+.|..+ .++...+|.++++...++|
T Consensus 344 ~g~~vlEAmA~G-~PVI~s-~~g--g~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~f- 418 (465)
T PLN02871 344 LGFVVLEAMASG-VPVVAA-RAG--GIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKW- 418 (465)
T ss_pred cCcHHHHHHHcC-CCEEEc-CCC--CcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhC-
Confidence 355689999999 899998 643 34466643 7778888888888777655443 4667788999888766653
Q ss_pred hchHHHHHHHHH
Q psy11113 412 ATLQSQMDTLVA 423 (699)
Q Consensus 412 ss~~~iv~TtL~ 423 (699)
+-+.++..+++
T Consensus 419 -sw~~~a~~l~~ 429 (465)
T PLN02871 419 -DWRAATRKLRN 429 (465)
T ss_pred -CHHHHHHHHHH
Confidence 33344444443
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=91.65 E-value=0.38 Score=48.55 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=66.9
Q ss_pred CCCCeEEEEEeccCcHHHHHHHHHhcCCCCc---cEEEEEecCCCCCCCCC--CCCCCCcCEEEEeCCCCC--ccccCCC
Q psy11113 549 QREQFTIIILTYERDQVLINSLSRLNNLPYL---NKVVVVWNSVQPPREDL--RWPDIGVPVVVVRTNTND--LNNRFKP 621 (699)
Q Consensus 549 p~~~FT~vI~ty~R~~~L~~~l~~l~~~p~l---~kIvVvWn~~~~pp~~~--~wp~~~vpV~vi~~~~nS--LnnRF~P 621 (699)
....+|+||.+|++...|.+.|+.+.+..+. -+|+|+=++........ .+..- .++++..+.|. -.+|-.=
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~~~g~~~a~n~g 104 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPERRGKAAALNRA 104 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCCCCChHHHHHHH
Confidence 3446999999999999999999998764433 37888854433221110 12211 47777665541 1122222
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHH
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWR 652 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr 652 (699)
.....+|-|+.+|+|..+..+-|.-....+.
T Consensus 105 i~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 105 LALATGEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHcCCCEEEEEccccCcCHHHHHHHHHHhc
Confidence 2346789999999999999888887777664
No 29
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.64 E-value=0.33 Score=51.16 Aligned_cols=107 Identities=16% Similarity=0.232 Sum_probs=73.4
Q ss_pred EEEEEeccCc-HHHHHHHHHhcC-C-CC-ccEEEEEecCCCCCCCCC--C--CCCCCcCEEEEeCCCCC--ccccCCCCC
Q psy11113 554 TIIILTYERD-QVLINSLSRLNN-L-PY-LNKVVVVWNSVQPPREDL--R--WPDIGVPVVVVRTNTND--LNNRFKPYD 623 (699)
Q Consensus 554 T~vI~ty~R~-~~L~~~l~~l~~-~-p~-l~kIvVvWn~~~~pp~~~--~--wp~~~vpV~vi~~~~nS--LnnRF~P~~ 623 (699)
++||.+|+.. +.|.+.|+.+.+ . +. ..+||||=|+...+.... . .-.....|++++.+.|. -..|=.=..
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999998 999999999964 3 22 248888877654332111 0 01122468888877662 001111112
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 624 VIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 624 ~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
.-+.|-|+.||+|+.++.+-|+-....-.++|..+||
T Consensus 81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~ 117 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVC 117 (299)
T ss_pred HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 3578999999999999999999988888888988877
No 30
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=91.58 E-value=0.41 Score=47.58 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=69.6
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCC---ccEEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCCCccc-cCCCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPY---LNKVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTNDLNN-RFKPYDVI 625 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~---l~kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~nSLnn-RF~P~~~I 625 (699)
++++||-+|++.+.|.++|+.+.+..+ --+|+||=|+....... ..+..-...|+++..+.+.... +=.-....
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g~~~a 80 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNS 80 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHHHHHh
Confidence 379999999999999999999975433 45788773332221100 0112222347777655433210 01111235
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccC
Q psy11113 626 ETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFP 662 (699)
Q Consensus 626 ~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~ 662 (699)
++|-|+.+|+|..++.+-|+-.....+..+..+||..
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 117 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGP 117 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecc
Confidence 7999999999999999999988876666555555543
No 31
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=91.47 E-value=0.68 Score=48.87 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=51.5
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
++...++|||++|| |||.+ |.-. ..+++.=....+.++..+..++.+.|..+ .++...+|.++++...+..|+
T Consensus 282 ~~~~~~~EA~a~G~-PvI~s-~~~~--~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s 356 (367)
T cd05844 282 GLPVVLLEAQASGV-PVVAT-RHGG--IPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFD 356 (367)
T ss_pred CCchHHHHHHHcCC-CEEEe-CCCC--chhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCC
Confidence 34677999999996 99988 7543 34666555677888888888776655433 355678888888766555555
No 32
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=91.36 E-value=0.53 Score=46.86 Aligned_cols=94 Identities=24% Similarity=0.237 Sum_probs=61.4
Q ss_pred EEEEeccCc-HHHHHHHHHhcCCCCccEEEEEecCCCCCCCCCCCCCC-CcCEEEEeCCCCC-----ccccCCCCCCCCc
Q psy11113 555 IIILTYERD-QVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDI-GVPVVVVRTNTND-----LNNRFKPYDVIET 627 (699)
Q Consensus 555 ~vI~ty~R~-~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~~~wp~~-~vpV~vi~~~~nS-----LnnRF~P~~~I~T 627 (699)
+||-+|++. ..|.+.|+.+.+- ..+|+||=|+.... ... .-.. ..++++++.+.|. +|.=+.--....+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~-~~~-~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~ 76 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGND-IEL-RLRLNSEKIELIHLGENLGIAKALNIGIKAALENGA 76 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCcc-HHH-HhhccCCcEEEEECCCceehHHhhhHHHHHHHhCCC
Confidence 478899999 9999999999764 57888884443221 111 1111 4567888776651 1111110011146
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHHh
Q psy11113 628 EAVLNMDDDVYLRHDEIMFAFRVWRE 653 (699)
Q Consensus 628 eAVLslDDDi~l~~del~FaF~vWr~ 653 (699)
|-|+.+|+|+.+..+.|+-.. .|..
T Consensus 77 d~v~~lD~D~~~~~~~l~~l~-~~~~ 101 (237)
T cd02526 77 DYVLLFDQDSVPPPDMVEKLL-AYKI 101 (237)
T ss_pred CEEEEECCCCCcCHhHHHHHH-HHHH
Confidence 999999999999999999987 4544
No 33
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=91.24 E-value=3.6 Score=42.90 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=47.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC---CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI---SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si---s~e~i~~Mrrq~r~v~~~yfss 413 (699)
++.-++|||++|| |||.+ |.- ...|++.= ....++..+..++.+.+..+ +++....|... +....+.|+
T Consensus 275 ~~~~~~Ea~a~G~-PvI~~-~~~--~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s- 346 (360)
T cd04951 275 FGLVVAEAMACEL-PVVAT-DAG--GVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFS- 346 (360)
T ss_pred CChHHHHHHHcCC-CEEEe-cCC--ChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcC-
Confidence 3567899999999 88888 642 23344431 34455667777766655443 44444555544 444444443
Q ss_pred hHHHHHHHHHHH
Q psy11113 414 LQSQMDTLVAVV 425 (699)
Q Consensus 414 ~~~iv~TtL~iL 425 (699)
.+.+.+..+++.
T Consensus 347 ~~~~~~~~~~~y 358 (360)
T cd04951 347 INSIVQQWLTLY 358 (360)
T ss_pred HHHHHHHHHHHh
Confidence 456666665554
No 34
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=91.02 E-value=0.17 Score=50.23 Aligned_cols=106 Identities=25% Similarity=0.325 Sum_probs=57.4
Q ss_pred eEEEEEeccCcHHHHHHHHHhcCCCCccEEEEEecCC-CCCCCCC------CCCCCCcCEEEEeCCCCC-----ccccCC
Q psy11113 553 FTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSV-QPPREDL------RWPDIGVPVVVVRTNTND-----LNNRFK 620 (699)
Q Consensus 553 FT~vI~ty~R~~~L~~~l~~l~~~p~l~kIvVvWn~~-~~pp~~~------~wp~~~vpV~vi~~~~nS-----LnnRF~ 620 (699)
.++||-+|++.+.|.+.|+.+.+..+-+--|||-.+. ..+.... .+| ...|+++....|. -.++-.
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~--~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYP--RVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTG--G-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcC--CCceEEeecCCCCCcchHHHHHHH
Confidence 7899999999999999999999865533333333333 3222211 233 3467777665431 111111
Q ss_pred CCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 621 PYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 621 P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
-...+++|-|+.+|||+.+.++-|+.........--.+||
T Consensus 81 ~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 81 ALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEE
T ss_pred HHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEe
Confidence 1234679999999999999999999988887333445555
No 35
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=90.97 E-value=1.2 Score=47.63 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=54.7
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCH------HHHHHHHhcC--CHHHHHHHHHhhHHHHHh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARI------PELHLLLRSI--SDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l------~~L~~iL~si--s~e~i~~Mrrq~r~v~~~ 409 (699)
+.-++|||++|| |||.+ |.- ...|+|.=....+.++..+. .++.+.|..+ .+++..+|.++++.....
T Consensus 294 g~~~lEA~a~G~-PvI~s-~~~--~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~ 369 (388)
T TIGR02149 294 GIVNLEAMACGT-PVVAS-ATG--GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEE 369 (388)
T ss_pred ChHHHHHHHcCC-CEEEe-CCC--CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 345799999999 88888 643 24466654455666666655 5555544432 466778888888876655
Q ss_pred hhhchHHHHHHHHHHHH
Q psy11113 410 YLATLQSQMDTLVAVVR 426 (699)
Q Consensus 410 yfss~~~iv~TtL~iL~ 426 (699)
.|+ .+.++..++++++
T Consensus 370 ~~s-~~~~~~~~~~~y~ 385 (388)
T TIGR02149 370 EFS-WGSIAKKTVEMYR 385 (388)
T ss_pred hCC-HHHHHHHHHHHHH
Confidence 555 4566666666654
No 36
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=90.95 E-value=0.83 Score=46.45 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=48.6
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
++..++|||.+|| |||.+ |.-. ..+++.=....+.++..+..++.+.+..+ .++...+|.++++..+...|+
T Consensus 276 ~~~~~~Ea~~~G~-Pvi~s-~~~~--~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s 349 (359)
T cd03808 276 LPRVLLEAMAMGR-PVIAT-DVPG--CREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFD 349 (359)
T ss_pred cchHHHHHHHcCC-CEEEe-cCCC--chhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Confidence 3567999999996 77777 6432 24555424456677777777766655543 356788888888877666555
No 37
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=90.46 E-value=0.4 Score=47.41 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=68.0
Q ss_pred CeEEEEEeccCc-HHHHHHHHHhcCCCCcc---EEEEEecCCCCCCCCC---CCCCCCcCEEEEeCCCCCcc---ccCCC
Q psy11113 552 QFTIIILTYERD-QVLINSLSRLNNLPYLN---KVVVVWNSVQPPREDL---RWPDIGVPVVVVRTNTNDLN---NRFKP 621 (699)
Q Consensus 552 ~FT~vI~ty~R~-~~L~~~l~~l~~~p~l~---kIvVvWn~~~~pp~~~---~wp~~~vpV~vi~~~~nSLn---nRF~P 621 (699)
..++||-+|++. ..|.+.|+.+.+..+-. +|+|| .+........ .+.. ...++++....|... ++=.=
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivv-dd~s~d~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~ 79 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVL-DDGRRPELRALAAELGV-EYGYRYLTRPDNRHAKAGNLNNA 79 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEE-cCCCchhHHHHHHHhhc-ccCceEEEeCCCCCCcHHHHHHH
Confidence 468999999986 56888999998877766 78877 3332221100 1111 114455554444211 10011
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC-Cccc
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD-RIVG 660 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd-RiVG 660 (699)
......|-|+.+|+|..+..+-|+-....+.++|+ -+|+
T Consensus 80 ~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~ 119 (234)
T cd06421 80 LAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQ 119 (234)
T ss_pred HHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEe
Confidence 12357899999999999999999999999987654 3444
No 38
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=90.44 E-value=0.63 Score=47.17 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=65.0
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCccEEEEEecCCCCCCCC-CCCCCCCcCEEEEeCCCCCc-cccCCCCCCCCccE
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQPPRED-LRWPDIGVPVVVVRTNTNDL-NNRFKPYDVIETEA 629 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~-~~wp~~~vpV~vi~~~~nSL-nnRF~P~~~I~TeA 629 (699)
+.|++|.||+....|.+.|+.+... ..+|+||=|........ .. .. .++|+....... ..|=.-.....++-
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~--~~--~~~v~~~~~~g~~~~~n~~~~~a~~d~ 74 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAK--EY--GAKVYQRWWDGFGAQRNFALELATNDW 74 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHH--Hc--CCEEEECCCCChHHHHHHHHHhCCCCE
Confidence 3689999999999999999998754 35899887764321110 00 12 344544421111 11111233467899
Q ss_pred EEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 630 VLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 630 VLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
|+.+|.|..++.+-++...+.-.+.|.
T Consensus 75 vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 75 VLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred EEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 999999999999999977777666776
No 39
>KOG2619|consensus
Probab=90.36 E-value=1.9 Score=48.15 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=91.1
Q ss_pred ccccccCCCceecCCccCCCCCCCCC--CCCCCCCCCCceEEEeecccccccCCCCCcccccccCCCCCCCCCCcHHHHH
Q psy11113 165 ELFRIRPKVDLVLPPGVGLPGGDIWN--ECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIEAS 242 (699)
Q Consensus 165 ~~~~frp~~Dv~iPp~~~~~~~~~~~--~~~~~~p~~Rk~Ll~f~G~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 242 (699)
..-+||.+-|+-.|-++-......+- ...+....+++.++.+...... .+.|..+++
T Consensus 159 ~T~Tyr~dSd~~~pygy~~~~~~~~~~~p~~~~~~~k~~~~aw~vSnc~~---------------------~~~R~~~~~ 217 (372)
T KOG2619|consen 159 WTMTYRRDSDLFVPYGYLEKPEANPVLVPVNSILSAKTKLAAWLVSNCIP---------------------RSARLDYYK 217 (372)
T ss_pred ceEEEeccCCCCCccceEeecccCceecccccccccccceeeeeccccCc---------------------chHHHHHHH
Confidence 55678999999997433222110111 2222345666667766654311 144555566
Q ss_pred HHhhhhcCCCCCeEEEEecccCCCCCCCCcchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccCCCCCccc
Q psy11113 243 SLTKYLTTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEET 322 (699)
Q Consensus 243 ~l~~~~~~~~~d~~~~~~~c~~~~~~c~~~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 322 (699)
.|.+ |-.-| +.. .|......+.....-.+.+.+.||.|..--. .-|||
T Consensus 218 ~L~k---~l~iD--~YG-~c~~~~~~~~~~~~~~~~~s~YKFyLAfENS------~c~DY-------------------- 265 (372)
T KOG2619|consen 218 ELMK---HLEID--SYG-ECLRKNANRDPSDCLLETLSHYKFYLAFENS------NCEDY-------------------- 265 (372)
T ss_pred HHHh---hCcee--ecc-ccccccccCCCCCcceeecccceEEEEeccc------CCccc--------------------
Confidence 6654 32222 122 6753111222233456788899999964332 22344
Q ss_pred cchhhhhhccccccchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccC-CCHHHHHHHHhcCCHHHH
Q psy11113 323 VEDDRAERYASTIGIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPV-ARIPELHLLLRSISDEDI 396 (699)
Q Consensus 323 ~~~~~~~~~~~s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe-~~l~~L~~iL~sis~e~i 396 (699)
.+-.|+-||.+|.|||++++ ... ++.+. ....|.|.. ..+.+|...|+.+.+++.
T Consensus 266 --------------VTEKfw~al~~gsVPVvlg~-~n~---e~fvP-~~SfI~vdDF~s~~ela~ylk~L~~n~~ 321 (372)
T KOG2619|consen 266 --------------VTEKFWNALDAGSVPVVLGP-PNY---ENFVP-PDSFIHVDDFQSPQELAAYLKKLDKNPA 321 (372)
T ss_pred --------------ccHHHHhhhhcCcccEEECC-ccc---cccCC-CcceEehhhcCCHHHHHHHHHHhhcCHH
Confidence 25678899999999999994 332 33345 566666654 556678888888865543
No 40
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=90.28 E-value=0.81 Score=39.67 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=47.0
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
.+.|++|++++||+.|.-. . --+.+++++..-.+.+. +..++.+.++.+ .+++..+|.++++......++
T Consensus 11 ~~~r~~E~~a~G~~vi~~~--~--~~~~~~~~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~~t 82 (92)
T PF13524_consen 11 PNMRIFEAMACGTPVISDD--S--PGLREIFEDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARERVLKRHT 82 (92)
T ss_pred CchHHHHHHHCCCeEEECC--h--HHHHHHcCCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhCC
Confidence 4789999999999755432 2 34456677876677765 444444433321 678899999999877665555
No 41
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=90.05 E-value=0.84 Score=48.58 Aligned_cols=71 Identities=13% Similarity=0.057 Sum_probs=50.6
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
..-++|||++| +|||.+ |. -...++|.=....+.++..+..++.+.+..+ .++...+|.++++...+..|+
T Consensus 316 ~~~l~Ea~a~G-~Pvi~s-~~--~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s 388 (398)
T cd03800 316 GLTALEAMACG-LPVVAT-AV--GGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYT 388 (398)
T ss_pred CcHHHHHHhcC-CCEEEC-CC--CCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC
Confidence 45689999999 599998 63 2455666555667778877787776654433 366788899999887755554
No 42
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=90.00 E-value=0.62 Score=46.25 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=66.4
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCC--ccEEEEEecCCCCCCCC---CCCC-CC-CcCEEEEeCCCC-----Ccc-ccCCC
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPY--LNKVVVVWNSVQPPRED---LRWP-DI-GVPVVVVRTNTN-----DLN-NRFKP 621 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~--l~kIvVvWn~~~~pp~~---~~wp-~~-~vpV~vi~~~~n-----SLn-nRF~P 621 (699)
+||-+|++.+.|.+.|+.+.+..+ --+|+||=+ ....... ..|- .. ...++++....+ .+. .|-.=
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd-~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFND-ASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeC-CCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHH
Confidence 578999999999999999965322 247888733 3222110 0110 01 124555433221 110 01111
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCcccc
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGF 661 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF 661 (699)
...-..|-|+.+|+|..+..+.|+-.+..+.++|+-+||.
T Consensus 80 ~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 80 IAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 2335789999999999999999998888888889988885
No 43
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=89.99 E-value=3.7 Score=45.01 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=53.1
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEE-eccCCCHHHHHHHH-hcCCHHHHHHHHHhhHHHHHhhhhchH
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILI-PLPVARIPELHLLL-RSISDEDIVAFRHQGRQVFTRYLATLQ 415 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV-~ipe~~l~~L~~iL-~sis~e~i~~Mrrq~r~v~~~yfss~~ 415 (699)
..-++|||++| +|||.+ +.- ...|++.=....+ .++..+..++.+.| +-+.+.+..+|.++++......|+ .+
T Consensus 291 ~~~~lEAma~G-~PVI~s-~~g--g~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fs-w~ 365 (380)
T PRK15484 291 CMVAVEAMAAG-KPVLAS-TKG--GITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYS-WE 365 (380)
T ss_pred ccHHHHHHHcC-CCEEEe-CCC--CcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCC-HH
Confidence 45689999999 789888 643 2346553333333 45566777666544 334555567888888765554454 45
Q ss_pred HHHHHHHHHHH
Q psy11113 416 SQMDTLVAVVR 426 (699)
Q Consensus 416 ~iv~TtL~iL~ 426 (699)
.++..+++.+.
T Consensus 366 ~~a~~~~~~l~ 376 (380)
T PRK15484 366 GVTQRFEEQIH 376 (380)
T ss_pred HHHHHHHHHHH
Confidence 67777777664
No 44
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=89.83 E-value=1.2 Score=49.98 Aligned_cols=85 Identities=12% Similarity=0.216 Sum_probs=60.0
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss 413 (699)
+++.-++|||++|| |||.+ |.- ...|+|+=....+.++..+..+|...+..+ .++...+|.++++......| |
T Consensus 352 ~fg~~~lEAma~G~-PvV~s-~~g--g~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f-s 426 (439)
T TIGR02472 352 PFGLTLLEAAACGL-PIVAT-DDG--GPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHY-S 426 (439)
T ss_pred CcccHHHHHHHhCC-CEEEe-CCC--CcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC-C
Confidence 45677999999999 99999 743 345777655667888888888776654432 35566778888876555555 4
Q ss_pred hHHHHHHHHHHH
Q psy11113 414 LQSQMDTLVAVV 425 (699)
Q Consensus 414 ~~~iv~TtL~iL 425 (699)
.+.+++.++++|
T Consensus 427 w~~~~~~~~~l~ 438 (439)
T TIGR02472 427 WDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHHh
Confidence 567777777665
No 45
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.72 E-value=0.66 Score=42.14 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred EEEEeccCcHHHHHHHHHhcCCC-CccEEEEEecCCCCCCCC--CCCCCC-CcCEEEEeCCCC--CccccCCCCCCCCcc
Q psy11113 555 IIILTYERDQVLINSLSRLNNLP-YLNKVVVVWNSVQPPRED--LRWPDI-GVPVVVVRTNTN--DLNNRFKPYDVIETE 628 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p-~l~kIvVvWn~~~~pp~~--~~wp~~-~vpV~vi~~~~n--SLnnRF~P~~~I~Te 628 (699)
+||.+|++.+.|.++|+.+.+.. .--+|+|+-++....... ..+... ...+.++....| .-.+|-.=.....++
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~~ 80 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAKGD 80 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcCCC
Confidence 57889999999999999997533 356899998776432211 112111 123444444433 122222223456899
Q ss_pred EEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCcccc
Q psy11113 629 AVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHA 667 (699)
Q Consensus 629 AVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~ 667 (699)
.|+.+|+|..+..+-|+-....+.+.+ .+.++.++.+.
T Consensus 81 ~i~~~D~D~~~~~~~l~~~~~~~~~~~-~~~~v~~~~~~ 118 (180)
T cd06423 81 IVVVLDADTILEPDALKRLVVPFFADP-KVGAVQGRVRV 118 (180)
T ss_pred EEEEECCCCCcChHHHHHHHHHhccCC-CeeeEeeeEEE
Confidence 999999999999888887767776665 35555555544
No 46
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.33 E-value=0.59 Score=45.51 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=61.1
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCC-ccEEEEEecCCCCCCCCC---CCCCCCcCEEEEeCCCCC-----ccccCCCCCCC
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPY-LNKVVVVWNSVQPPREDL---RWPDIGVPVVVVRTNTND-----LNNRFKPYDVI 625 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~-l~kIvVvWn~~~~pp~~~---~wp~~~vpV~vi~~~~nS-----LnnRF~P~~~I 625 (699)
|||.||++.+.|.+.|+.+.+... -.+|+|+ ++........ .+. -..+++++....|. +|.=+.--...
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiiiv-D~~s~d~t~~~~~~~~-~~~~i~~~~~~~n~g~~~~~n~~~~~a~~~ 78 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIVI-DNASTDGTAEWLTSLG-DLDNIVYLRLPENLGGAGGFYEGVRRAYEL 78 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEEE-ECCCCcchHHHHHHhc-CCCceEEEECccccchhhHHHHHHHHHhcc
Confidence 588999999999999999976433 2355555 4443321110 011 12347777776652 22111100134
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHH
Q psy11113 626 ETEAVLNMDDDVYLRHDEIMFAFRVWR 652 (699)
Q Consensus 626 ~TeAVLslDDDi~l~~del~FaF~vWr 652 (699)
..|.|+.+|||..+..+-|+-....+.
T Consensus 79 ~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 678999999999999999998888886
No 47
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=88.88 E-value=1.1 Score=46.07 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=45.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++|||++|| |||.+ |.. ...+++.= ...+.++.+ ..++.+.+..+ .++...+|.++++...+..|+ .
T Consensus 294 ~~~~~~Eama~G~-PvI~~-~~~--~~~~~~~~-~~~~~~~~~-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s-~ 366 (375)
T cd03821 294 FGIVVAEALACGT-PVVTT-DKV--PWQELIEY-GCGWVVDDD-VDALAAALRRALELPQRLKAMGENGRALVEERFS-W 366 (375)
T ss_pred CCcHHHHHHhcCC-CEEEc-CCC--CHHHHhhc-CceEEeCCC-hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC-H
Confidence 3566899999997 88887 643 23454433 445555443 35554443332 236788888888877565554 3
Q ss_pred HHHHHH
Q psy11113 415 QSQMDT 420 (699)
Q Consensus 415 ~~iv~T 420 (699)
+.+++.
T Consensus 367 ~~~~~~ 372 (375)
T cd03821 367 TAIAQQ 372 (375)
T ss_pred HHHHHH
Confidence 344443
No 48
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=88.83 E-value=0.57 Score=46.97 Aligned_cols=102 Identities=15% Similarity=0.119 Sum_probs=63.4
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc---cEEEEEecCCCCCCCC------CCCCCCCcCEEEEeCCCC-C--ccccC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL---NKVVVVWNSVQPPRED------LRWPDIGVPVVVVRTNTN-D--LNNRF 619 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l---~kIvVvWn~~~~pp~~------~~wp~~~vpV~vi~~~~n-S--LnnRF 619 (699)
.+|+||-+|+..+.|.++|+.+.+..+. -+|+|+ ++....... ..|...+++|+++....| . -.++=
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVv-D~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n 80 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVL-DDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALA 80 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEE-ECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHH
Confidence 4799999999999999999999765443 367676 332211000 012333567776654332 1 11111
Q ss_pred CCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcC
Q psy11113 620 KPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQR 655 (699)
Q Consensus 620 ~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~P 655 (699)
.=....+.+-|+.+|.|..+..+-|+-... .-++|
T Consensus 81 ~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~-~~~~~ 115 (232)
T cd06437 81 EGMKVAKGEYVAIFDADFVPPPDFLQKTPP-YFADP 115 (232)
T ss_pred HHHHhCCCCEEEEEcCCCCCChHHHHHhhh-hhcCC
Confidence 112346899999999999999999887433 33445
No 49
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=88.72 E-value=0.72 Score=50.04 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=69.8
Q ss_pred CCCCCeEEEEEeccCcHHHHHHHHHhc----CCCCccEEEEEecCCCCCCCCC--CCC-CCCcCEEEEeCCCCCc--ccc
Q psy11113 548 KQREQFTIIILTYERDQVLINSLSRLN----NLPYLNKVVVVWNSVQPPREDL--RWP-DIGVPVVVVRTNTNDL--NNR 618 (699)
Q Consensus 548 ~p~~~FT~vI~ty~R~~~L~~~l~~l~----~~p~l~kIvVvWn~~~~pp~~~--~wp-~~~vpV~vi~~~~nSL--nnR 618 (699)
++..+.++||-+|+..+.|.++++++. +.+.--+|+||=++........ .+- ..+..|+++..++|.= ..+
T Consensus 3 ~~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~ 82 (325)
T PRK10714 3 HPIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAI 82 (325)
T ss_pred CCCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHH
Confidence 355679999999998888877777664 3333458888833322211100 011 1134555555444421 111
Q ss_pred CCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 619 FKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 619 F~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
..=...-..|.|+.+|.|...+.++|.-.++.|++..| +||
T Consensus 83 ~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~D-vV~ 123 (325)
T PRK10714 83 MAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYD-VVG 123 (325)
T ss_pred HHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCC-EEE
Confidence 11122346899999999999999999999999987655 675
No 50
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.45 E-value=2.4 Score=44.45 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=48.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCC-HHHHHHHHhcCCHHHHHHHHHhhHHHHHhhhhchH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVAR-IPELHLLLRSISDEDIVAFRHQGRQVFTRYLATLQ 415 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~-l~~L~~iL~sis~e~i~~Mrrq~r~v~~~yfss~~ 415 (699)
++.-++|||++|| |||.+ |.- +..+++.=. ...++..+ +.+...-|-. .++.+.+|.++++...+..|+ .+
T Consensus 281 ~~~~~~EAma~G~-PvI~s-~~~--~~~e~~~~~--g~~~~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~~~fs-~~ 352 (363)
T cd04955 281 TNPSLLEAMAYGC-PVLAS-DNP--FNREVLGDK--AIYFKVGDDLASLLEELEA-DPEEVSAMAKAARERIREKYT-WE 352 (363)
T ss_pred CChHHHHHHHcCC-CEEEe-cCC--ccceeecCC--eeEecCchHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHhCC-HH
Confidence 3456999999999 77777 533 345666542 33334444 3332222222 235678888888877666554 45
Q ss_pred HHHHHHHHHH
Q psy11113 416 SQMDTLVAVV 425 (699)
Q Consensus 416 ~iv~TtL~iL 425 (699)
.+++..++++
T Consensus 353 ~~~~~~~~~y 362 (363)
T cd04955 353 KIADQYEELY 362 (363)
T ss_pred HHHHHHHHHh
Confidence 6777666654
No 51
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=87.98 E-value=3.2 Score=44.75 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=51.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCC-H-HHHHHHHhcCCHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVAR-I-PELHLLLRSISDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~-l-~~L~~iL~sis~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
+..-++|||++| +|||.+ |.-.++ ++|.-....+.++..+ + ..|..+|. .++...+|.++++......|+ .
T Consensus 286 ~g~~~lEA~a~G-~Pvv~s-~~~~~~--~~i~~~~~g~~~~~~~~~a~~i~~ll~--~~~~~~~~~~~a~~~~~~~~s-~ 358 (372)
T cd03792 286 FGLTVTEALWKG-KPVIAG-PVGGIP--LQIEDGETGFLVDTVEEAAVRILYLLR--DPELRRKMGANAREHVRENFL-I 358 (372)
T ss_pred CCHHHHHHHHcC-CCEEEc-CCCCch--hhcccCCceEEeCCcHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHcC-H
Confidence 456799999999 599998 754333 5554334344444322 1 12333333 356678999999876655443 5
Q ss_pred HHHHHHHHHHHHh
Q psy11113 415 QSQMDTLVAVVRD 427 (699)
Q Consensus 415 ~~iv~TtL~iL~~ 427 (699)
+.++...++.+++
T Consensus 359 ~~~~~~~~~~~~~ 371 (372)
T cd03792 359 TRHLKDYLYLISK 371 (372)
T ss_pred HHHHHHHHHHHHh
Confidence 6677777777653
No 52
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.85 E-value=1.1 Score=44.08 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=65.2
Q ss_pred eEEEEEeccCcHHHHHHHHHhcCCC-CccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCCccccCCCCCCCCccEEE
Q psy11113 553 FTIIILTYERDQVLINSLSRLNNLP-YLNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTNDLNNRFKPYDVIETEAVL 631 (699)
Q Consensus 553 FT~vI~ty~R~~~L~~~l~~l~~~p-~l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nSLnnRF~P~~~I~TeAVL 631 (699)
.|+||.+|++...|.+.|+.+.+.. .--+|+|| ++.........-- ...+.++....+.=.++-.-.....++-|+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~evivv-dd~s~d~~~~~~~--~~~~~~~~~~~g~~~a~n~g~~~a~~~~i~ 77 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIVV-DGGSTDGTVAIAR--SAGVVVISSPKGRARQMNAGAAAARGDWLL 77 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEEE-eCCCCccHHHHHh--cCCeEEEeCCcCHHHHHHHHHHhccCCEEE
Confidence 3789999999989999999987543 34567777 5443321110000 133455444332111111222346799999
Q ss_pred EecCCcccCHHHHHHHHHHHHhcCCCccccC
Q psy11113 632 NMDDDVYLRHDEIMFAFRVWREQRDRIVGFP 662 (699)
Q Consensus 632 slDDDi~l~~del~FaF~vWr~~PdRiVGF~ 662 (699)
.+|+|..+..+-|+-.+......+ ..+|..
T Consensus 78 ~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~ 107 (221)
T cd02522 78 FLHADTRLPPDWDAAIIETLRADG-AVAGAF 107 (221)
T ss_pred EEcCCCCCChhHHHHHHHHhhcCC-cEEEEE
Confidence 999999999999988776665544 455543
No 53
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=87.74 E-value=1.8 Score=45.02 Aligned_cols=72 Identities=17% Similarity=0.139 Sum_probs=50.0
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCccccc-CCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVL-DWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvI-DW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss 413 (699)
..-++|||.+| +|||.+ |.-..+ +.+ +.....+.++..+..++.+.+..+ .+++..+|+++++...+.+|+.
T Consensus 279 g~~~~Ea~~~g-~Pvi~~-~~~~~~--~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 353 (357)
T cd03795 279 GIVLLEAMAFG-KPVIST-EIGTGG--SYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTA 353 (357)
T ss_pred chHHHHHHHcC-CCEEec-CCCCch--hHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcch
Confidence 45689999997 577777 533222 333 346677778888887766655443 4677899999999888887774
No 54
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=87.50 E-value=1.1 Score=49.57 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=51.7
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccC-CCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPV-ARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe-~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
|+..-++|||++|+ |||.+ |.--. .|+|+=..-.+.++. .+..++.+.|..+ .++...+|+++++..|+..|+
T Consensus 322 g~p~~llEAma~G~-PVIas-~vgg~--~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~ 397 (407)
T cd04946 322 GLPVSIMEAMSFGI-PVIAT-NVGGT--PEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFN 397 (407)
T ss_pred cccHHHHHHHHcCC-CEEeC-CCCCc--HHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC
Confidence 34667999999995 99988 74333 466654444455554 4666665554443 478889999999999998887
Q ss_pred c
Q psy11113 413 T 413 (699)
Q Consensus 413 s 413 (699)
.
T Consensus 398 ~ 398 (407)
T cd04946 398 A 398 (407)
T ss_pred H
Confidence 4
No 55
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=87.43 E-value=6.7 Score=43.87 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=37.4
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccC---CcceEEeccCCCHHHHHHHHhc---CCHHHHHHHHHhhHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLD---WNKILIPLPVARIPELHLLLRS---ISDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvID---W~~fsV~ipe~~l~~L~~iL~s---is~e~i~~Mrrq~r~v~~~ 409 (699)
++.-++|||++||.|| .+ |.- -|.++++. =....+.+. +..++.+.+.. .+++....|++..+.+-++
T Consensus 337 Fgi~~lEAMa~G~pvI-a~-~~g-gp~~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~ 410 (419)
T cd03806 337 FGIGVVEYMAAGLIPL-AH-ASG-GPLLDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAARSSVKR 410 (419)
T ss_pred cccHHHHHHHcCCcEE-EE-cCC-CCchheeeccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3566899999999666 45 421 36667774 233333332 55554443222 2455555566666655444
No 56
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=87.10 E-value=1.7 Score=44.94 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=44.5
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc-C-CHHHHHHHHHhhHHHHHh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS-I-SDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s-i-s~e~i~~Mrrq~r~v~~~ 409 (699)
+.-++|||++|| |||.+ |.- .+.++++ ...+.++..+..++.+.|.. + .++...+|.++++..-++
T Consensus 286 ~~~~~Ea~a~G~-pvI~~-~~~--~~~e~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 353 (365)
T cd03809 286 GLPVLEAMACGT-PVIAS-NIS--SLPEVAG--DAALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKR 353 (365)
T ss_pred CCCHHHHhcCCC-cEEec-CCC--Cccceec--CceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 455899999997 77777 542 2445553 55677777788887776665 3 356677788777743333
No 57
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=86.99 E-value=0.86 Score=45.30 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=64.0
Q ss_pred eEEEEEeccCc-HHHHHHHHHhcCCCCccEEEEEecCCCCCCCCCCC-CCCCcCEEEEeCCCCC-ccccCCCCCCCCccE
Q psy11113 553 FTIIILTYERD-QVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRW-PDIGVPVVVVRTNTND-LNNRFKPYDVIETEA 629 (699)
Q Consensus 553 FT~vI~ty~R~-~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~~~w-p~~~vpV~vi~~~~nS-LnnRF~P~~~I~TeA 629 (699)
.|+||-+|++. +.|.+.|+.+.+.. -.+|+||=++...+...... -.-...+.++...... -+++-.-....++|-
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~a~~d~ 80 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRHVTTDI 80 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 58999999998 99999999997643 45888885554332211100 0111234454433221 111111223468999
Q ss_pred EEEecCCcccCHHHHHHHHHHHH
Q psy11113 630 VLNMDDDVYLRHDEIMFAFRVWR 652 (699)
Q Consensus 630 VLslDDDi~l~~del~FaF~vWr 652 (699)
|+.+|+|..+..+-|+-....+.
T Consensus 81 v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 81 VVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred EEEECCCceeChhHHHHHHHhcc
Confidence 99999999999999999988886
No 58
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.93 E-value=0.93 Score=44.47 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=64.9
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCCc---cEEEEEecCCCCCCCC-C--CCCCCCcCEEEEeCCC--C-----CccccCCC
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPYL---NKVVVVWNSVQPPRED-L--RWPDIGVPVVVVRTNT--N-----DLNNRFKP 621 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~l---~kIvVvWn~~~~pp~~-~--~wp~~~vpV~vi~~~~--n-----SLnnRF~P 621 (699)
+||.||++.+.|.+.|+.+.+..+- -+|+||-++....... . .....+..|+++.... | .+|.-
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g--- 77 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTA--- 77 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHH---
Confidence 5889999999999999999754433 4899998775432111 0 0111234456655542 1 12111
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
.....+|-|+.+|+|..+..+-|+-..+.-.+.+.-+|.
T Consensus 78 ~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (229)
T cd04192 78 IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVA 116 (229)
T ss_pred HHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEe
Confidence 123578999999999999999998877655544433333
No 59
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=86.72 E-value=1.5 Score=47.30 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=52.3
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCCHHHHHHHHHhhHHHHHhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~e~i~~Mrrq~r~v~~~y 410 (699)
-..++++|++|+ |||++ +.-.++ ++|.=....+.++ .+.++.+.|..++++++.+|+++++.+-+.+
T Consensus 250 P~K~~~ymA~G~-PVI~~-~~~~~~--~~V~~~~~G~~v~--~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~ 316 (333)
T PRK09814 250 PHKLSLYLAAGL-PVIVW-SKAAIA--DFIVENGLGFVVD--SLEELPEIIDNITEEEYQEMVENVKKISKLL 316 (333)
T ss_pred hHHHHHHHHCCC-CEEEC-CCccHH--HHHHhCCceEEeC--CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 346889999885 99998 654333 6666567777776 6789999999999999999999999776653
No 60
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=86.10 E-value=5.8 Score=41.46 Aligned_cols=85 Identities=12% Similarity=0.078 Sum_probs=55.4
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||.+||- ||.+ |. -...+++.=....+.++..+..++.+.|..+ .++...+|+++++..-+..| |.
T Consensus 277 ~g~~~~Eam~~g~P-vI~~-~~--~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-s~ 351 (365)
T cd03825 277 FPNTAIEALACGTP-VVAF-DV--GGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEF-DS 351 (365)
T ss_pred ccHHHHHHHhcCCC-EEEe-cC--CCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhc-CH
Confidence 35668999999985 6666 53 3445666545567777777776665544332 35568888888886655555 45
Q ss_pred HHHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVVR 426 (699)
Q Consensus 415 ~~iv~TtL~iL~ 426 (699)
+.+++.++++.+
T Consensus 352 ~~~~~~~~~~y~ 363 (365)
T cd03825 352 RVQAKRYLSLYE 363 (365)
T ss_pred HHHHHHHHHHHh
Confidence 667777766654
No 61
>PRK14099 glycogen synthase; Provisional
Probab=86.07 E-value=6.7 Score=45.04 Aligned_cols=85 Identities=22% Similarity=0.269 Sum_probs=52.4
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCc--------ceEEeccCCCHHHHHHHHhc----C-CHHHHHHHHHh
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWN--------KILIPLPVARIPELHLLLRS----I-SDEDIVAFRHQ 402 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~--------~fsV~ipe~~l~~L~~iL~s----i-s~e~i~~Mrrq 402 (699)
+++.-.+|||++||+||+ + +.--++ +-++|.. ...+.++..+...|.+.|.. + .++...+|+++
T Consensus 381 ~fGl~~lEAma~G~ppVv-s-~~GGl~-d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d~~~~~~l~~~ 457 (485)
T PRK14099 381 PCGLTQLCALRYGAVPVV-A-RVGGLA-DTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFADPVAWRRLQRN 457 (485)
T ss_pred CCcHHHHHHHHCCCCcEE-e-CCCCcc-ceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 456778999999999988 5 422232 2234553 35778888888777665442 2 35667888887
Q ss_pred hHHHHHhhhhchHHHHHHHHHHHHh
Q psy11113 403 GRQVFTRYLATLQSQMDTLVAVVRD 427 (699)
Q Consensus 403 ~r~v~~~yfss~~~iv~TtL~iL~~ 427 (699)
++ +.-|+ .+.++..++++.++
T Consensus 458 ~~---~~~fS-w~~~a~~y~~lY~~ 478 (485)
T PRK14099 458 GM---TTDVS-WRNPAQHYAALYRS 478 (485)
T ss_pred hh---hhcCC-hHHHHHHHHHHHHH
Confidence 75 23333 34555555555544
No 62
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=85.25 E-value=3.9 Score=46.40 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=56.0
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCC------cceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDW------NKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFT 408 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW------~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~ 408 (699)
+..-++|||++|| |||.+ |.- ...++++= ....+.++..+..++.+.+..+ .++...+|.++++...+
T Consensus 383 ~p~~vlEAma~G~-PVVat-d~g--~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~ 458 (475)
T cd03813 383 QPLVILEAMAAGI-PVVAT-DVG--SCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVE 458 (475)
T ss_pred CChHHHHHHHcCC-CEEEC-CCC--ChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4567999999999 88888 642 23455533 3477888888888776654433 46778899999988778
Q ss_pred hhhhchHHHHHHHHH
Q psy11113 409 RYLATLQSQMDTLVA 423 (699)
Q Consensus 409 ~yfss~~~iv~TtL~ 423 (699)
++|+ .+.+++...+
T Consensus 459 ~~~s-~~~~~~~y~~ 472 (475)
T cd03813 459 RYYT-LERMIDSYRR 472 (475)
T ss_pred HhCC-HHHHHHHHHH
Confidence 7776 3345544443
No 63
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=84.96 E-value=1.3 Score=49.08 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=72.8
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCC--ccEEEEEecCCCCCCCC------CCCCCCCcCEEEEeCCCCC---------
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPY--LNKVVVVWNSVQPPRED------LRWPDIGVPVVVVRTNTND--------- 614 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~--l~kIvVvWn~~~~pp~~------~~wp~~~vpV~vi~~~~nS--------- 614 (699)
..++||-+|+..+.|.+.|+.+.+..+ --+|+||=|+....... ...|. ...++++..+.+.
T Consensus 41 ~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~-~~~i~vi~~~~~~~g~~Gk~~A 119 (384)
T TIGR03469 41 AVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGR-GDRLTVVSGQPLPPGWSGKLWA 119 (384)
T ss_pred CEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCC-CCcEEEecCCCCCCCCcchHHH
Confidence 589999999999999999999975433 34888884443321110 00111 1246776643221
Q ss_pred ccccCCCCCCCC-----ccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCcc
Q psy11113 615 LNNRFKPYDVIE-----TEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRY 665 (699)
Q Consensus 615 LnnRF~P~~~I~-----TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~ 665 (699)
+|.= ....+ .|-|+.+|+|+.+..+.|+...+..++.+.-+|+-.+|.
T Consensus 120 ~n~g---~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~ 172 (384)
T TIGR03469 120 VSQG---IAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRL 172 (384)
T ss_pred HHHH---HHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccc
Confidence 1110 11233 799999999999999999999988888777788766664
No 64
>PLN02949 transferase, transferring glycosyl groups
Probab=84.74 E-value=16 Score=41.96 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=48.6
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCccccc-CCc--ceEEeccCCCHHHHHHHHhcC---CHHHHHHHHHhhHHHHHhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVL-DWN--KILIPLPVARIPELHLLLRSI---SDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvI-DW~--~fsV~ipe~~l~~L~~iL~si---s~e~i~~Mrrq~r~v~~~y 410 (699)
+..-++|||++||+||.-. .+ =|-.|++ ++. .-.+.. .+..++.+.+..+ ++++..+|+++++..-++
T Consensus 367 FGivvlEAMA~G~PVIa~~-~g--Gp~~eIV~~~~~g~tG~l~--~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~- 440 (463)
T PLN02949 367 FGISVVEYMAAGAVPIAHN-SA--GPKMDIVLDEDGQQTGFLA--TTVEEYADAILEVLRMRETERLEIAAAARKRANR- 440 (463)
T ss_pred CChHHHHHHHcCCcEEEeC-CC--CCcceeeecCCCCcccccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-
Confidence 3566899999998777654 22 1333443 221 111122 2565555443332 456678899988765444
Q ss_pred hhchHHHHHHHHHHHHhhc
Q psy11113 411 LATLQSQMDTLVAVVRDRL 429 (699)
Q Consensus 411 fss~~~iv~TtL~iL~~R~ 429 (699)
|+ .+.....++++++.-+
T Consensus 441 FS-~e~~~~~~~~~i~~l~ 458 (463)
T PLN02949 441 FS-EQRFNEDFKDAIRPIL 458 (463)
T ss_pred cC-HHHHHHHHHHHHHHHH
Confidence 54 3556666666666543
No 65
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=84.73 E-value=2.3 Score=45.56 Aligned_cols=71 Identities=15% Similarity=0.040 Sum_probs=43.4
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss 413 (699)
+.-++|||++| +|||.+ |.-- ..++|.-....+.++. +..++.+.+..+ .++...+|+++++...+..|+.
T Consensus 313 g~~~lEAma~G-~PvI~s-~~~~--~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~ 385 (392)
T cd03805 313 GIVPLEAMYAG-KPVIAC-NSGG--PLETVVDGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFST 385 (392)
T ss_pred CchHHHHHHcC-CCEEEE-CCCC--cHHHhccCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCH
Confidence 34579999999 577777 6422 2355544344555554 566655443332 2456888999888766666653
No 66
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=84.71 E-value=2.3 Score=43.14 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc---cEEEEEecCCCCCCCC--CCCCC-CCcCEEEEeCCCC-----CccccCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL---NKVVVVWNSVQPPRED--LRWPD-IGVPVVVVRTNTN-----DLNNRFK 620 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l---~kIvVvWn~~~~pp~~--~~wp~-~~vpV~vi~~~~n-----SLnnRF~ 620 (699)
.+|+||-+|+..+.|.++|+.+.+..+- -+|+||=++....... ..+.. -...|.++....| .+|.
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~--- 78 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNY--- 78 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHH---
Confidence 4799999999999999999999875442 3677764432211000 01111 1123444333222 1221
Q ss_pred CCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCcccc
Q psy11113 621 PYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHA 667 (699)
Q Consensus 621 P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~ 667 (699)
=....+.|-|+.+|+|..+..+.|+-....+.+....++...++...
T Consensus 79 g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 125 (241)
T cd06427 79 ALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNY 125 (241)
T ss_pred HHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEe
Confidence 12346789999999999999999999999998765565544455433
No 67
>PRK11204 N-glycosyltransferase; Provisional
Probab=84.60 E-value=1.7 Score=48.07 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=68.8
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCCC--CCCCCCcCEEEEeCCCCC-----ccccCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPREDL--RWPDIGVPVVVVRTNTND-----LNNRFKPYD 623 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~~--~wp~~~vpV~vi~~~~nS-----LnnRF~P~~ 623 (699)
..+++|-+|+..+.|.+.|+.+.+..+- -+|+||-++........ .+..-...+++++.+.|. +|.= ..
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g---~~ 131 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTG---AA 131 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHH---HH
Confidence 6899999999999999999998765443 47888866544321110 011111237777744441 2211 12
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 624 VIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 624 ~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
..+.|-|+.+|+|..+..|-|+-..+...++|+
T Consensus 132 ~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~ 164 (420)
T PRK11204 132 AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR 164 (420)
T ss_pred HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCC
Confidence 357899999999999999999988888877664
No 68
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=84.54 E-value=3.9 Score=44.80 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=49.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
+...++|||++|| |||.+ +.. .+.+..=....+.++ .+..++.+.+..+ .++...+|.++++..-+..|+ .
T Consensus 311 ~~~~~lEAma~G~-PVV~t-~~~---~~~i~~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fs-w 383 (397)
T TIGR03087 311 IQNKVLEAMAMAK-PVVAS-PEA---AEGIDALPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYH-W 383 (397)
T ss_pred cccHHHHHHHcCC-CEEec-Ccc---cccccccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCC-H
Confidence 4567999999998 99988 632 122221123345555 6677665544332 355678898888866555454 4
Q ss_pred HHHHHHHHHHH
Q psy11113 415 QSQMDTLVAVV 425 (699)
Q Consensus 415 ~~iv~TtL~iL 425 (699)
+.+++.+.+++
T Consensus 384 ~~~~~~~~~~l 394 (397)
T TIGR03087 384 PRNLARLDALL 394 (397)
T ss_pred HHHHHHHHHHh
Confidence 45666655554
No 69
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=84.39 E-value=1.1 Score=44.01 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=65.0
Q ss_pred EEEEeccCcHHHHHHHHHhcCCC--CccEEEEEecCCCCCCCC---CCCCCCCcCEEEEeCCCC-CccccC-CCCCCCCc
Q psy11113 555 IIILTYERDQVLINSLSRLNNLP--YLNKVVVVWNSVQPPRED---LRWPDIGVPVVVVRTNTN-DLNNRF-KPYDVIET 627 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p--~l~kIvVvWn~~~~pp~~---~~wp~~~vpV~vi~~~~n-SLnnRF-~P~~~I~T 627 (699)
|||.+|++...|.++|+.+.+.. .--+|+||=| ....... ..|......+++++.+.| ...+.+ .=.....+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd-~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a~g 79 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDD-NSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAARG 79 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeC-CCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHcCC
Confidence 58899999999999999997543 3467777733 3322110 012222234566665554 111111 11234678
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHHhcCCCcc
Q psy11113 628 EAVLNMDDDVYLRHDEIMFAFRVWREQRDRIV 659 (699)
Q Consensus 628 eAVLslDDDi~l~~del~FaF~vWr~~PdRiV 659 (699)
|.|+.+|+|..+..+.|+-..+.+...+..+|
T Consensus 80 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 80 DVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 99999999999999999999888654433444
No 70
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=83.75 E-value=9.9 Score=42.92 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=48.5
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCccccc-CCc-----ceEEeccCCCHHHHHHHHhcC------CHHHHHHHHHhhH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVL-DWN-----KILIPLPVARIPELHLLLRSI------SDEDIVAFRHQGR 404 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvI-DW~-----~fsV~ipe~~l~~L~~iL~si------s~e~i~~Mrrq~r 404 (699)
++.-.+|||++||.|| ++ +.-- ..|+| |.. ...+.++..+..+|...|..+ .++...+|.+++.
T Consensus 378 ~gl~~lEAma~G~pvI-~s-~~gg--~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~ 453 (473)
T TIGR02095 378 CGLTQLYAMRYGTVPI-VR-RTGG--LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAM 453 (473)
T ss_pred cHHHHHHHHHCCCCeE-Ec-cCCC--ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 3556799999999665 45 4322 33444 321 567777888877766554332 3556677777664
Q ss_pred HHHHhhhhchHHHHHHHHHHHH
Q psy11113 405 QVFTRYLATLQSQMDTLVAVVR 426 (699)
Q Consensus 405 ~v~~~yfss~~~iv~TtL~iL~ 426 (699)
+..|+ .+.+++..+++.+
T Consensus 454 ---~~~fs-w~~~a~~~~~~Y~ 471 (473)
T TIGR02095 454 ---SQDFS-WDKSAKQYVELYR 471 (473)
T ss_pred ---ccCCC-cHHHHHHHHHHHH
Confidence 33343 4556666665543
No 71
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=83.62 E-value=4.5 Score=41.91 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=30.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI 391 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si 391 (699)
++..++|||++|+ |||.+ |.-- ..|+++=..-.+.++. ..++.+.|..+
T Consensus 257 ~~~~~lEAma~G~-PvI~~-~~~~--~~e~i~~~~~g~l~~~--~~~l~~~l~~l 305 (335)
T cd03802 257 FGLVMIEAMACGT-PVIAF-RRGA--VPEVVEDGVTGFLVDS--VEELAAAVARA 305 (335)
T ss_pred cchHHHHHHhcCC-CEEEe-CCCC--chhheeCCCcEEEeCC--HHHHHHHHHHH
Confidence 3566999999997 99998 7543 3466654333344443 55666655544
No 72
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=83.36 E-value=10 Score=42.25 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=45.1
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC-----CHHHHHHHHHhhHHHHHhhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI-----SDEDIVAFRHQGRQVFTRYL 411 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si-----s~e~i~~Mrrq~r~v~~~yf 411 (699)
+..-++|||++|+ |||.+ |.- -..|+|.=....+.++ +..+|.+.+..+ ++++..+|.++++..-+..|
T Consensus 330 ~p~~~~Eama~G~-PVI~s-~~~--~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~~~~ 403 (415)
T cd03816 330 LPMKVVDMFGCGL-PVCAL-DFK--CIDELVKHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESELRW 403 (415)
T ss_pred CcHHHHHHHHcCC-CEEEe-CCC--CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhcCH
Confidence 4567999999998 99998 643 2346664343444443 566655543322 26788999999887655444
Q ss_pred h
Q psy11113 412 A 412 (699)
Q Consensus 412 s 412 (699)
+
T Consensus 404 ~ 404 (415)
T cd03816 404 D 404 (415)
T ss_pred H
Confidence 4
No 73
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.59 E-value=1.6 Score=42.23 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=66.3
Q ss_pred EEEEEeccCc--HHHHHHHHHhcCCCC-ccEEEEEecCCCCCCCCC---CCCCCCcCEEEEeCCCCC--ccccCCCCCCC
Q psy11113 554 TIIILTYERD--QVLINSLSRLNNLPY-LNKVVVVWNSVQPPREDL---RWPDIGVPVVVVRTNTND--LNNRFKPYDVI 625 (699)
Q Consensus 554 T~vI~ty~R~--~~L~~~l~~l~~~p~-l~kIvVvWn~~~~pp~~~---~wp~~~vpV~vi~~~~nS--LnnRF~P~~~I 625 (699)
|++|-||.+. +.|.+.|+.+....+ -.+|+||=++........ .+.. ..+++++..+.|. -.+|-.=...-
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~-~~~i~~i~~~~n~G~~~a~N~g~~~a 79 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR-KLPLKVVPLEKNRGLGKALNEGLKHC 79 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh-cCCeEEEEcCccccHHHHHHHHHHhc
Confidence 5889999875 579999999975433 357776655442221100 0111 1247777766552 11222222345
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 626 ETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 626 ~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
.++.|+.+|+|..+..+-|+-....+.++|+
T Consensus 80 ~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~ 110 (201)
T cd04195 80 TYDWVARMDTDDISLPDRFEKQLDFIEKNPE 110 (201)
T ss_pred CCCEEEEeCCccccCcHHHHHHHHHHHhCCC
Confidence 7899999999999999999999998887764
No 74
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=82.36 E-value=3.8 Score=43.80 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=47.3
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~y 410 (699)
++.-++|||++|| |||.+ |.-.-| .++|.=....+.++..+..+|.+.|..+ .++...+|+++++...++|
T Consensus 291 ~~~~~lEAma~G~-PvI~~-~~~~g~-~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 291 FGLSLMEALSHGL-PVISY-DVNYGP-SEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred cChHHHHHHhCCC-CEEEe-cCCCCc-HHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 4567999999999 77777 521111 3555445566777877877766654433 3567889999888765443
No 75
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.36 E-value=17 Score=43.02 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=52.4
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHH---hcCCH--HHHHHHHHhhHHHHHhh
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLL---RSISD--EDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL---~sis~--e~i~~Mrrq~r~v~~~y 410 (699)
+++.-++|||++|| |||.+ |.--. .|+|.=..-.+.++..+...+.+.+ ..+.+ ++...|.++++..-+..
T Consensus 484 Gfp~vlLEAMA~Gl-PVVAT-dvGG~--~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~ 559 (578)
T PRK15490 484 GLPNVLIEAQMVGV-PVIST-PAGGS--AECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQER 559 (578)
T ss_pred CccHHHHHHHHhCC-CEEEe-CCCCc--HHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677999999999 99998 64333 3666555566667776654333221 22111 12335667777655665
Q ss_pred hhchHHHHHHHHHHHH
Q psy11113 411 LATLQSQMDTLVAVVR 426 (699)
Q Consensus 411 fss~~~iv~TtL~iL~ 426 (699)
|+ .+.+++..++++.
T Consensus 560 FS-~e~Mv~~y~ki~~ 574 (578)
T PRK15490 560 FT-VEHMVGTFVKTIA 574 (578)
T ss_pred CC-HHHHHHHHHHHHH
Confidence 65 5677777777665
No 76
>PHA01630 putative group 1 glycosyl transferase
Probab=82.21 E-value=6.7 Score=42.80 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=44.3
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCc--------------------ceEEeccCCCHH---HHHHHHhcCCHH
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWN--------------------KILIPLPVARIP---ELHLLLRSISDE 394 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~--------------------~fsV~ipe~~l~---~L~~iL~sis~e 394 (699)
..-++|||++|| |||.+ |.- ...|+|.=. .+.+.++.++-. .+..+|....++
T Consensus 223 gl~~lEAMA~G~-PVIas-~~g--g~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~ 298 (331)
T PHA01630 223 EIPVIEALALGL-DVVVT-EKG--AWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPE 298 (331)
T ss_pred ChHHHHHHHcCC-CEEEe-CCC--CchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHH
Confidence 455899999998 56666 532 233443222 233344443333 233444433335
Q ss_pred HHHHHHHhhHHHHHhhhhchHHHHHHHHHHHH
Q psy11113 395 DIVAFRHQGRQVFTRYLATLQSQMDTLVAVVR 426 (699)
Q Consensus 395 ~i~~Mrrq~r~v~~~yfss~~~iv~TtL~iL~ 426 (699)
+..+|..+++..+..-|+ .+.+++..+++++
T Consensus 299 ~~~~~~~~~~~~~~~~fs-~~~ia~k~~~l~~ 329 (331)
T PHA01630 299 KKKENLEGRAILYRENYS-YNAIAKMWEKILE 329 (331)
T ss_pred HHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHh
Confidence 555555555544454444 4567777777664
No 77
>PRK14098 glycogen synthase; Provisional
Probab=81.80 E-value=10 Score=43.62 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=46.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCccccc-CC---cceEEeccCCCHHHHHHHHhc----C-CHHHHHHHHHhhHHHH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVL-DW---NKILIPLPVARIPELHLLLRS----I-SDEDIVAFRHQGRQVF 407 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvI-DW---~~fsV~ipe~~l~~L~~iL~s----i-s~e~i~~Mrrq~r~v~ 407 (699)
++.-.+|||++||+||+.. .+- ++ |.+ |. ..-.+.++..+...|.+.|.. . .+++..+|++++.
T Consensus 394 ~Gl~~lEAma~G~ppVv~~-~GG-l~--d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~~~~~~~~~--- 466 (489)
T PRK14098 394 CGMLQMFAMSYGTIPVAYA-GGG-IV--ETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERWEELVLEAM--- 466 (489)
T ss_pred chHHHHHHHhCCCCeEEec-CCC-Cc--eeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh---
Confidence 4567899999999999765 321 22 222 32 344667788887776655442 1 3455666665542
Q ss_pred HhhhhchHHHHHHHHHHHHh
Q psy11113 408 TRYLATLQSQMDTLVAVVRD 427 (699)
Q Consensus 408 ~~yfss~~~iv~TtL~iL~~ 427 (699)
++-| |.+.++...+++.+.
T Consensus 467 ~~~f-sw~~~a~~y~~lY~~ 485 (489)
T PRK14098 467 ERDF-SWKNSAEEYAQLYRE 485 (489)
T ss_pred cCCC-ChHHHHHHHHHHHHH
Confidence 2223 234455555554443
No 78
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=81.45 E-value=22 Score=35.81 Aligned_cols=70 Identities=23% Similarity=0.182 Sum_probs=44.3
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHH----HHHHhcCC-HHHHHHHHHhhHHHHHhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPEL----HLLLRSIS-DEDIVAFRHQGRQVFTRYL 411 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L----~~iL~sis-~e~i~~Mrrq~r~v~~~yf 411 (699)
+..++|||++||. ||.+ |.- ...+++.=....+.++.++...+ ..++.... ++...+|..+++..+...|
T Consensus 277 ~~~~~Ea~~~G~P-vI~~-~~~--~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (353)
T cd03811 277 PNVLLEAMALGTP-VVAT-DCP--GPREILEDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREY 351 (353)
T ss_pred CcHHHHHHHhCCC-EEEc-CCC--ChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 5568999999985 5555 543 34566665667777888888775 44444444 3445667775555555444
No 79
>PRK00654 glgA glycogen synthase; Provisional
Probab=81.42 E-value=13 Score=42.21 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=50.3
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCccccc-CCc-----ceEEeccCCCHHHHHHHHhcC-----CHHHHHHHHHhhHH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVL-DWN-----KILIPLPVARIPELHLLLRSI-----SDEDIVAFRHQGRQ 405 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvI-DW~-----~fsV~ipe~~l~~L~~iL~si-----s~e~i~~Mrrq~r~ 405 (699)
++.-.+|||++||+||+ + +.--+ .|+| |.. .-.+.++..+..+|.+.|..+ .++...+|.+++.
T Consensus 369 ~gl~~lEAma~G~p~V~-~-~~gG~--~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~- 443 (466)
T PRK00654 369 CGLTQLYALRYGTLPIV-R-RTGGL--ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLWRALQRQAM- 443 (466)
T ss_pred chHHHHHHHHCCCCEEE-e-CCCCc--cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-
Confidence 46678999999998876 4 42222 2433 431 457778888887776654432 3455667777664
Q ss_pred HHHhhhhchHHHHHHHHHHHHh
Q psy11113 406 VFTRYLATLQSQMDTLVAVVRD 427 (699)
Q Consensus 406 v~~~yfss~~~iv~TtL~iL~~ 427 (699)
+..|+ .+.+++.++++.+.
T Consensus 444 --~~~fs-w~~~a~~~~~lY~~ 462 (466)
T PRK00654 444 --AQDFS-WDKSAEEYLELYRR 462 (466)
T ss_pred --ccCCC-hHHHHHHHHHHHHH
Confidence 23343 45666666666554
No 80
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=81.18 E-value=1.2 Score=42.31 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred EEEEeccCcHHHHHHHHHhcCCC---CccEEEEEecCCCCCCCC-C-CCCCCCcCEEEEeCCCCC--ccccCCCCCCCCc
Q psy11113 555 IIILTYERDQVLINSLSRLNNLP---YLNKVVVVWNSVQPPRED-L-RWPDIGVPVVVVRTNTND--LNNRFKPYDVIET 627 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p---~l~kIvVvWn~~~~pp~~-~-~wp~~~vpV~vi~~~~nS--LnnRF~P~~~I~T 627 (699)
+||.+|++.+.|.+.|+.+.+.. ..-+|+|+=|+....... . .+..-...++++..+.|. -.++=.-.....+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a~g 80 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAARG 80 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHhcC
Confidence 57889999999999999998664 377888887665432111 0 011111123556665552 1111112233567
Q ss_pred cEEEEecCCcccCHHHHHHHHHH-HHhcCCCcccc
Q psy11113 628 EAVLNMDDDVYLRHDEIMFAFRV-WREQRDRIVGF 661 (699)
Q Consensus 628 eAVLslDDDi~l~~del~FaF~v-Wr~~PdRiVGF 661 (699)
|.|+.+|+|..++.+-|+-.... ++..++=++|-
T Consensus 81 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 81 DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 99999999999999999988887 44456656664
No 81
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=80.98 E-value=5.6 Score=41.37 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=47.5
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
++..++|||++||-.| .+ |. -.+.+++.=....+.+++.+..++.+.|..+ .+++..+|.++++...+..|+
T Consensus 274 ~~~~~~Ea~a~G~Pvi-~~-~~--~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s 347 (355)
T cd03799 274 LPVVLMEAMAMGLPVI-ST-DV--SGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFD 347 (355)
T ss_pred ccHHHHHHHHcCCCEE-ec-CC--CCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999998665 45 43 2345666544456777777777666554443 355678888888876666554
No 82
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=80.75 E-value=6.5 Score=40.42 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=41.6
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYL 411 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yf 411 (699)
+..++|||++|+ |||.+ |.- .+.+++.=....+.++..+. ++.+.+..+ .++...+|+++++...++++
T Consensus 292 ~~~~~Ea~~~g~-PvI~~-~~~--~~~~~i~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 362 (374)
T cd03817 292 GLVLLEAMAAGL-PVVAV-DAP--GLPDLVADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS 362 (374)
T ss_pred ChHHHHHHHcCC-cEEEe-CCC--ChhhheecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 456899999986 55555 432 24465544455556665553 333332222 24455789988887777765
No 83
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=79.90 E-value=1.9 Score=41.04 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=59.9
Q ss_pred EEEEEeccCcHHHHHHHHHhcC--CCCccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCC-c-cccCCCCCCCCccE
Q psy11113 554 TIIILTYERDQVLINSLSRLNN--LPYLNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTND-L-NNRFKPYDVIETEA 629 (699)
Q Consensus 554 T~vI~ty~R~~~L~~~l~~l~~--~p~l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nS-L-nnRF~P~~~I~TeA 629 (699)
|+||.+|++.+.|.+.|..+.+ .+. -+|+|| ++.........-......+.++....|. . .+|=.-....+.+-
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~-~evivv-Dd~s~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a~~~~ 78 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN-IEYIVI-DGGSTDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALATGDI 78 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC-ceEEEE-eCCCCccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHcCCCE
Confidence 5899999999999999999964 344 478777 3332221100000111112233333331 1 00000112357899
Q ss_pred EEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 630 VLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 630 VLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
|+.+|+|..+..+.+.-....+.+.++
T Consensus 79 v~~ld~D~~~~~~~~~~~~~~~~~~~~ 105 (202)
T cd06433 79 IGFLNSDDTLLPGALLAVVAAFAEHPE 105 (202)
T ss_pred EEEeCCCcccCchHHHHHHHHHHhCCC
Confidence 999999999999999888777777653
No 84
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=78.30 E-value=11 Score=41.23 Aligned_cols=87 Identities=13% Similarity=-0.013 Sum_probs=47.5
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC-CH-HHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI-SD-EDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si-s~-e~i~~Mrrq~r~v~~~yfss~ 414 (699)
+..-++|||++|| |||.+ |.-- ..|+|.=.. .+.++. +..++.+.|..+ .. .+...|.++++.-.+.-|+ .
T Consensus 282 ~g~~~~EAma~G~-PVI~s-~~gg--~~e~i~~~~-~~~~~~-~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs-~ 354 (398)
T cd03796 282 FCIAIVEAASCGL-LVVST-RVGG--IPEVLPPDM-ILLAEP-DVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYS-W 354 (398)
T ss_pred cCHHHHHHHHcCC-CEEEC-CCCC--chhheeCCc-eeecCC-CHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCC-H
Confidence 3567999999998 55666 5433 346665332 344443 555554433321 21 1122344444443344343 5
Q ss_pred HHHHHHHHHHHHhhcC
Q psy11113 415 QSQMDTLVAVVRDRLG 430 (699)
Q Consensus 415 ~~iv~TtL~iL~~R~~ 430 (699)
+.+++.++++.+.-++
T Consensus 355 ~~~~~~~~~~y~~l~~ 370 (398)
T cd03796 355 EDVAKRTEKVYDRILQ 370 (398)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6788888888776654
No 85
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=78.15 E-value=3.9 Score=42.51 Aligned_cols=98 Identities=14% Similarity=0.164 Sum_probs=59.9
Q ss_pred eccCc-HHHHHHHHHhcCCCCccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCC-----ccccCCCCCCCCccEEEE
Q psy11113 559 TYERD-QVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTND-----LNNRFKPYDVIETEAVLN 632 (699)
Q Consensus 559 ty~R~-~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nS-----LnnRF~P~~~I~TeAVLs 632 (699)
||+|+ +.|.+.|+.+.+- ..+|+||=|+.........+-.....|+++..+.|. +|.=+.---+-..|.|+.
T Consensus 2 tyn~~~~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~ 79 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLL 79 (281)
T ss_pred ccCccHHHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEE
Confidence 78884 7888999988764 246655555532221111111112357888877761 111000000125799999
Q ss_pred ecCCcccCHHHHHHHHHHHHhcCCCc
Q psy11113 633 MDDDVYLRHDEIMFAFRVWREQRDRI 658 (699)
Q Consensus 633 lDDDi~l~~del~FaF~vWr~~PdRi 658 (699)
||||..+..+-|+-..+.+.+.+..+
T Consensus 80 lD~D~~~~~~~l~~l~~~~~~~~~~~ 105 (281)
T TIGR01556 80 LDQDSRPGNAFLAAQWKLLSAENGQA 105 (281)
T ss_pred ECCCCCCCHHHHHHHHHHHHhcCCce
Confidence 99999999999999999998765333
No 86
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.71 E-value=9.9 Score=36.75 Aligned_cols=103 Identities=12% Similarity=0.198 Sum_probs=64.8
Q ss_pred EEEEEeccCcHHHHHHHHHhcCCCC-ccEEEEEecCCCCCCCC-C-CCC-CCCcCEEEEeCCCCC--ccccCCCCCCCCc
Q psy11113 554 TIIILTYERDQVLINSLSRLNNLPY-LNKVVVVWNSVQPPRED-L-RWP-DIGVPVVVVRTNTND--LNNRFKPYDVIET 627 (699)
Q Consensus 554 T~vI~ty~R~~~L~~~l~~l~~~p~-l~kIvVvWn~~~~pp~~-~-~wp-~~~vpV~vi~~~~nS--LnnRF~P~~~I~T 627 (699)
++||-+|++.+.|.+.|+.+.+..+ --+|+||=++....... . .+- ..+..+.++....|. -.++-.=....++
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g 80 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAADG 80 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCCC
Confidence 5899999999999999999975322 34788884333221111 0 010 112356666665541 1111111345789
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 628 EAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 628 eAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
|-|+.+|+|..+..+.|+-..+...+.+.
T Consensus 81 ~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~ 109 (214)
T cd04196 81 DYVFFCDQDDIWLPDKLERLLKAFLKDDK 109 (214)
T ss_pred CEEEEECCCcccChhHHHHHHHHHhcCCC
Confidence 99999999999999999988887655554
No 87
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=76.69 E-value=2.7 Score=40.64 Aligned_cols=106 Identities=16% Similarity=0.217 Sum_probs=62.1
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCC---ccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCC-----CccccCCCCC--C
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPY---LNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTN-----DLNNRFKPYD--V 624 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~---l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~n-----SLnnRF~P~~--~ 624 (699)
|||-+|+..+.|.+.|+++.+..+ .-+|+||=++........ --..+..+.++....| .+|.=+.-.. .
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~-~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~ 79 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQV-ARAAGATVLERHDPERRGKGYALDFGFRHLLNLA 79 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHH-HHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcC
Confidence 578899999999999999976433 346777743332111000 0012233333222222 1111011000 1
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHHhcCCCcccc
Q psy11113 625 IETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGF 661 (699)
Q Consensus 625 I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF 661 (699)
-..|.|+.+|.|..++.+.|....+...+.++-+.|.
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~ 116 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAY 116 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEE
Confidence 2478999999999999999998888887777655554
No 88
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=75.56 E-value=2.7 Score=37.07 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=59.7
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCC-ccEEEEEecCCCCCCCCC--CCCCCCcCEEEEeCCCC--CccccCCCCCCCCccE
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPY-LNKVVVVWNSVQPPREDL--RWPDIGVPVVVVRTNTN--DLNNRFKPYDVIETEA 629 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~-l~kIvVvWn~~~~pp~~~--~wp~~~vpV~vi~~~~n--SLnnRF~P~~~I~TeA 629 (699)
++|.++.+...|...|+++.+..+ ..+|+|+=|+........ .......++..+....+ .-.++-.-.....++-
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 80 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAARGEY 80 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHhcCCE
Confidence 478899999999999999987764 345665555443321111 00000122333333322 1111222223357999
Q ss_pred EEEecCCcccCHHHHHHHHHHHHhcCCC
Q psy11113 630 VLNMDDDVYLRHDEIMFAFRVWREQRDR 657 (699)
Q Consensus 630 VLslDDDi~l~~del~FaF~vWr~~PdR 657 (699)
|+.+|+|..+..+.++.........++.
T Consensus 81 v~~~d~D~~~~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 81 ILFLDADDLLLPDWLERLVAELLADPEA 108 (156)
T ss_pred EEEECCCCccCccHHHHHHHHHhcCCCc
Confidence 9999999999998888764555555433
No 89
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=74.45 E-value=10 Score=31.62 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.0
Q ss_pred HHHHhhc
Q psy11113 41 TESLRQN 47 (699)
Q Consensus 41 ~e~~~~~ 47 (699)
.||.+.|
T Consensus 38 ~EAaRAN 44 (56)
T PF04728_consen 38 EEAARAN 44 (56)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 90
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=72.67 E-value=7.5 Score=38.07 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=60.4
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC------CCCCCCCcCEEEEeCCCC-Ccc----ccC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED------LRWPDIGVPVVVVRTNTN-DLN----NRF 619 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~------~~wp~~~vpV~vi~~~~n-SLn----nRF 619 (699)
..|+||-+|+....|.++|+.+.+..+- -+|+||=++....... ...| ...++++....| ..+ ++=
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYP--NVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCC--CCcEEEEecCCcCCCCHhHHHHH
Confidence 3799999999988899999999753322 4666665544321100 0112 133555554443 211 110
Q ss_pred CCCCCCCccEEEEecCCcccCHHHHHHHHHHH
Q psy11113 620 KPYDVIETEAVLNMDDDVYLRHDEIMFAFRVW 651 (699)
Q Consensus 620 ~P~~~I~TeAVLslDDDi~l~~del~FaF~vW 651 (699)
.=.....+|.|+.+|+|..++.+-|+-....-
T Consensus 80 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 80 KGYEEARYDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHhCCCCEEEEECCCceEChhHHHHHHHHh
Confidence 11234578999999999999999998777653
No 91
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=72.31 E-value=4.2 Score=38.90 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=63.6
Q ss_pred EEEEeccCcHHHHHHHHHhcC----CCCccEEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCCC-c-cccCCCCCCCC
Q psy11113 555 IIILTYERDQVLINSLSRLNN----LPYLNKVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTND-L-NNRFKPYDVIE 626 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~----~p~l~kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~nS-L-nnRF~P~~~I~ 626 (699)
+||-||++...|.++|+.+.+ ...--+|+||=|+....... ..+..-...++++...+|. . +.+-.=.....
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a~ 80 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHAR 80 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhcC
Confidence 578999998888777777643 12334788884443221100 0121112247777766552 1 11111122467
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHHhcCCCcccc
Q psy11113 627 TEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGF 661 (699)
Q Consensus 627 TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF 661 (699)
.|.|+.+|+|..++.+.|+..+....+..+-+.|.
T Consensus 81 ~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~ 115 (181)
T cd04187 81 GDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGV 115 (181)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEE
Confidence 79999999999999999999998854444444443
No 92
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=71.95 E-value=5.9 Score=42.05 Aligned_cols=70 Identities=19% Similarity=0.091 Sum_probs=42.9
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCC-H--HHHHHHHHhhH-HHHHhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSIS-D--EDIVAFRHQGR-QVFTRYL 411 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis-~--e~i~~Mrrq~r-~v~~~yf 411 (699)
+.-.+|||++|| |||.+ +.--. .++|.=....+.++..+..++.+.|..+- + +...+|+++++ +.|++|.
T Consensus 274 g~~~~Eama~G~-Pvi~~-~~~~~--~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 347 (351)
T cd03804 274 GIVPVEAMASGT-PVIAY-GKGGA--LETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAERFSESRFR 347 (351)
T ss_pred CchHHHHHHcCC-CEEEe-CCCCC--cceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHHHhcCHHHHH
Confidence 345799999998 99888 64332 35554345677777777776655444332 1 34566666654 4455553
No 93
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=71.36 E-value=11 Score=40.60 Aligned_cols=66 Identities=23% Similarity=0.194 Sum_probs=40.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC-CHHH---HHHHHHhhHH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI-SDED---IVAFRHQGRQ 405 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si-s~e~---i~~Mrrq~r~ 405 (699)
+..-++|||++| +|||.+ |..-- ..|+|.=....+.++..+..++.+.+..+ .+.+ ...++++++.
T Consensus 270 f~~~~lEAma~G-~Pvv~s-~~~~g-~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 339 (359)
T PRK09922 270 FPMTLLEAMSYG-IPCISS-DCMSG-PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIER 339 (359)
T ss_pred cChHHHHHHHcC-CCEEEe-CCCCC-hHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHH
Confidence 466799999999 688888 62221 23666545566677888888877655543 2222 3445555443
No 94
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.38 E-value=7.6 Score=41.35 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
++.+-+++++|...|.|+.+|+++||+.+.+++++.+++
T Consensus 53 ~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 53 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334457777777777777777777777777777665543
No 95
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=69.75 E-value=10 Score=42.86 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=64.7
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCcc---EEEEEecCCCCCCCCC---CCCCCCcCEEEEeCCCC-----CccccCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYLN---KVVVVWNSVQPPREDL---RWPDIGVPVVVVRTNTN-----DLNNRFK 620 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l~---kIvVvWn~~~~pp~~~---~wp~~~vpV~vi~~~~n-----SLnnRF~ 620 (699)
.+|+||-+|+..+.|.+.|+.+.+..+-. +|+|| ++........ .+......+.++..+.| .+|.=+
T Consensus 50 ~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVV-Dd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~AlN~gl- 127 (439)
T TIGR03111 50 DITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILA-NNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKALNAAI- 127 (439)
T ss_pred CEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEE-ECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHHHHHH-
Confidence 58999999999999999999997654433 57777 4433221100 01111112444332222 233222
Q ss_pred CCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 621 PYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 621 P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
.....|-|+.+|.|..+..+-|+-......++|+
T Consensus 128 --~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 128 --YNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred --HHccCCEEEEECCCCCcChHHHHHHHHHHHhCCC
Confidence 2356889999999999999999988877776775
No 96
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=69.70 E-value=3.9 Score=38.83 Aligned_cols=96 Identities=19% Similarity=0.222 Sum_probs=54.8
Q ss_pred EEEEeccCcHHHHHHHHHhcCCCCcc-EEEEEecCCCCCCCCC---CCCC-CCcCEEEE-eCCCC-Ccc-ccCCCCCCCC
Q psy11113 555 IIILTYERDQVLINSLSRLNNLPYLN-KVVVVWNSVQPPREDL---RWPD-IGVPVVVV-RTNTN-DLN-NRFKPYDVIE 626 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p~l~-kIvVvWn~~~~pp~~~---~wp~-~~vpV~vi-~~~~n-SLn-nRF~P~~~I~ 626 (699)
+||.+|++...|.++|+.+.+..+.. +|+ |+++........ .+.. ...++..+ +...+ ... +|=.=.....
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eii-vvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~ 79 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVI-IADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK 79 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEE-EEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc
Confidence 58899999999999999997644433 555 555554321100 0111 12233333 22222 000 0001112357
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHH
Q psy11113 627 TEAVLNMDDDVYLRHDEIMFAFRVW 651 (699)
Q Consensus 627 TeAVLslDDDi~l~~del~FaF~vW 651 (699)
.+-|+.+|+|..++.+-|+-..+..
T Consensus 80 g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 80 GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 8999999999999988888766654
No 97
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.16 E-value=9.8 Score=31.70 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=19.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
.+|+.|+.++++|++++...+.++...|.+-+.|
T Consensus 10 ~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 10 SDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666555544333
No 98
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=68.65 E-value=7.4 Score=43.00 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=55.6
Q ss_pred EEEEeccCcHHHHHHHHHhcCCC-C--ccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCCccc-----cCCCCCC--
Q psy11113 555 IIILTYERDQVLINSLSRLNNLP-Y--LNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTNDLNN-----RFKPYDV-- 624 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~p-~--l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nSLnn-----RF~P~~~-- 624 (699)
|+|.+|+|.+-|.+.|+.|.+.. . -.+|+|.=.+.+...... --..+..|++++....+..| .|..+..
T Consensus 4 Vlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~-v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia 82 (334)
T cd02514 4 VLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADV-AKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIA 82 (334)
T ss_pred EEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHH-HHhhccccEEEEcccccccccCcccccchhhHHH
Confidence 78999999999999999998752 3 335666633332221110 01122356666654333222 2222222
Q ss_pred -------------CCccEEEEecCCcccCHHHHHHH
Q psy11113 625 -------------IETEAVLNMDDDVYLRHDEIMFA 647 (699)
Q Consensus 625 -------------I~TeAVLslDDDi~l~~del~Fa 647 (699)
...+.|+.||||..+.+|=++|-
T Consensus 83 ~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf 118 (334)
T cd02514 83 RHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYF 118 (334)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHH
Confidence 24689999999999999966543
No 99
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=66.46 E-value=19 Score=38.39 Aligned_cols=105 Identities=23% Similarity=0.212 Sum_probs=70.4
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCccEEEEEecCCCCCCCCCCCCCC--CcCEEEEeCCCCC----ccccCCCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDI--GVPVVVVRTNTND----LNNRFKPYDVI 625 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~~~wp~~--~vpV~vi~~~~nS----LnnRF~P~~~I 625 (699)
..++||.||.|.+.|.+.|..+.+..+..+++|+=.|...... ..+-.. ..-|++++...|- =+|+-.- ..
T Consensus 4 ~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~-~~~~~~~~~~~v~~i~~~~NlG~agg~n~g~~--~a 80 (305)
T COG1216 4 KISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGS-LEALKARFFPNVRLIENGENLGFAGGFNRGIK--YA 80 (305)
T ss_pred ceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCC-HHHHHhhcCCcEEEEEcCCCccchhhhhHHHH--HH
Confidence 5789999999999999999999988777777762222222111 111111 3468888888882 1221100 01
Q ss_pred Cc--c-EEEEecCCcccCHHHHHHHHHHHHhcCCCcc
Q psy11113 626 ET--E-AVLNMDDDVYLRHDEIMFAFRVWREQRDRIV 659 (699)
Q Consensus 626 ~T--e-AVLslDDDi~l~~del~FaF~vWr~~PdRiV 659 (699)
.+ + .|+.|++|+.+.++-|+--.++-.+.++-.+
T Consensus 81 ~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 81 LAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred hcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 12 2 7999999999999999999998887765443
No 100
>PHA01633 putative glycosyl transferase group 1
Probab=66.43 E-value=20 Score=39.52 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=22.1
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCC
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDW 369 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW 369 (699)
+++.-++|||++|| |||.+ |-- +..|+.++
T Consensus 235 gfGlvlLEAMA~G~-PVVas-~~~--~l~Ei~g~ 264 (335)
T PHA01633 235 GFGMPVLESMAMGT-PVIHQ-LMP--PLDEFTSW 264 (335)
T ss_pred cCCHHHHHHHHcCC-CEEEc-cCC--CceeecCC
Confidence 35677999999999 99988 653 45566554
No 101
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=64.50 E-value=12 Score=37.42 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=59.2
Q ss_pred EEEEEeccCc-HHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC---CCC-CCCCcCEEEEeCCCCC-c--cccCCCCCC
Q psy11113 554 TIIILTYERD-QVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED---LRW-PDIGVPVVVVRTNTND-L--NNRFKPYDV 624 (699)
Q Consensus 554 T~vI~ty~R~-~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~---~~w-p~~~vpV~vi~~~~nS-L--nnRF~P~~~ 624 (699)
++||-+|+.. +.|.+.|+++.+..+- -+|+||=|+....... ..+ -..+..++++....|. . .++-.-...
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 5789999986 7899999999865442 4788875443322110 001 0112345555544331 0 111111111
Q ss_pred C--CccEEEEecCCcccCHHHHHHHHHHHH
Q psy11113 625 I--ETEAVLNMDDDVYLRHDEIMFAFRVWR 652 (699)
Q Consensus 625 I--~TeAVLslDDDi~l~~del~FaF~vWr 652 (699)
. .+|.|+.+|+|..++.+-|.-.....+
T Consensus 81 a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred cCCCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 2 268999999999999999998877664
No 102
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.46 E-value=14 Score=39.71 Aligned_cols=42 Identities=29% Similarity=0.327 Sum_probs=20.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|.||..+..+++++...+...+.|.++++..|.+.+-.|.|+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444444444444444444433
No 103
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=63.63 E-value=42 Score=37.57 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=45.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccc-cCCcc-----eEEeccCCCHHHHHHHHhcC-----CHHHHHHHHHhhHH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEV-LDWNK-----ILIPLPVARIPELHLLLRSI-----SDEDIVAFRHQGRQ 405 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dv-IDW~~-----fsV~ipe~~l~~L~~iL~si-----s~e~i~~Mrrq~r~ 405 (699)
++.-.+|||++||.||+- +.--+ .|+ .|... -.+.++..+..+|...+..+ ..+...+|.+++.
T Consensus 383 ~gl~~lEAma~G~pvI~~--~~gg~--~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~- 457 (476)
T cd03791 383 CGLTQMYAMRYGTVPIVR--ATGGL--ADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEAWRKLQRNAM- 457 (476)
T ss_pred CcHHHHHHhhCCCCCEEC--cCCCc--cceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHh-
Confidence 355689999999988754 32222 343 34431 56677777777666554432 2455666666654
Q ss_pred HHHhhhhchHHHHHHHHHHH
Q psy11113 406 VFTRYLATLQSQMDTLVAVV 425 (699)
Q Consensus 406 v~~~yfss~~~iv~TtL~iL 425 (699)
+..|+ .+.++...+++.
T Consensus 458 --~~~fs-w~~~a~~~~~~y 474 (476)
T cd03791 458 --AQDFS-WDRSAKEYLELY 474 (476)
T ss_pred --ccCCC-hHHHHHHHHHHH
Confidence 23233 345555555544
No 104
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=63.63 E-value=28 Score=44.06 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=61.7
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss 413 (699)
++..-++|||++|+ |||.+ |.- ...|+|.-..-.+.++..+...|.+.|..+ .++...+|.++++..-++ | +
T Consensus 583 gFGLvlLEAMAcGl-PVVAS-dvG--G~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~-F-S 656 (1050)
T TIGR02468 583 PFGLTLIEAAAHGL-PMVAT-KNG--GPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHL-F-S 656 (1050)
T ss_pred CCCHHHHHHHHhCC-CEEEe-CCC--CcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-C-C
Confidence 35677999999995 99998 642 345777666678888888888777654433 355678899888765555 3 4
Q ss_pred hHHHHHHHHHHHHhhc
Q psy11113 414 LQSQMDTLVAVVRDRL 429 (699)
Q Consensus 414 ~~~iv~TtL~iL~~R~ 429 (699)
-+.++..+++.+..-+
T Consensus 657 We~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 657 WPEHCKTYLSRIASCR 672 (1050)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4567777777666554
No 105
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.26 E-value=13 Score=39.91 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=33.0
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|+.+|...+.++++.+.++.+.+.|+.+|+.+|+.++-.|+|-
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r 99 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888888888888777766654
No 106
>PRK11637 AmiB activator; Provisional
Probab=62.51 E-value=15 Score=41.58 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=22.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.+|..++.++.+++++|...+.++++++.+|++++..+.+.
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554443
No 107
>PLN02939 transferase, transferring glycosyl groups
Probab=61.46 E-value=33 Score=43.05 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=39.4
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCc--------ceEEeccCCCHHHHHHHHh-c---C--CHHHHHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWN--------KILIPLPVARIPELHLLLR-S---I--SDEDIVAFRHQ 402 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~--------~fsV~ipe~~l~~L~~iL~-s---i--s~e~i~~Mrrq 402 (699)
++.-.+|||++||+||+.. .+- ++ +-|+|++ .-.+.++..+...|...|. . + .++...+|+++
T Consensus 869 fGLvqLEAMAyGtPPVVs~-vGG-L~-DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~ 945 (977)
T PLN02939 869 CGLTQMIAMRYGSVPIVRK-TGG-LN-DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQK 945 (977)
T ss_pred CcHHHHHHHHCCCCEEEec-CCC-Cc-ceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4566899999999998754 322 22 2234542 2355667777766654332 2 2 46777888776
Q ss_pred h
Q psy11113 403 G 403 (699)
Q Consensus 403 ~ 403 (699)
+
T Consensus 946 a 946 (977)
T PLN02939 946 D 946 (977)
T ss_pred H
Confidence 5
No 108
>PRK10125 putative glycosyl transferase; Provisional
Probab=61.09 E-value=30 Score=38.71 Aligned_cols=81 Identities=23% Similarity=0.152 Sum_probs=49.5
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCCHHHHHH-H---HHhhHHHHHhhhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISDEDIVA-F---RHQGRQVFTRYLA 412 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~e~i~~-M---rrq~r~v~~~yfs 412 (699)
+..-++|||++|| |||.+ |---+ .|+++= .-.+.++..|...|.+.+ .++...+ | ..+++......|+
T Consensus 319 fp~vilEAmA~G~-PVVat-~~gG~--~Eiv~~-~~G~lv~~~d~~~La~~~---~~~~~~~~~~~~~~~~r~~~~~~fs 390 (405)
T PRK10125 319 YPLILCEALSIGV-PVIAT-HSDAA--REVLQK-SGGKTVSEEEVLQLAQLS---KPEIAQAVFGTTLAEFSQRSRAAYS 390 (405)
T ss_pred CcCHHHHHHHcCC-CEEEe-CCCCh--HHhEeC-CcEEEECCCCHHHHHhcc---CHHHHHHhhhhHHHHHHHHHHHhCC
Confidence 3566899999985 88888 64433 467763 368888999998888643 2221111 2 1334433344443
Q ss_pred chHHHHHHHHHHHH
Q psy11113 413 TLQSQMDTLVAVVR 426 (699)
Q Consensus 413 s~~~iv~TtL~iL~ 426 (699)
.+.+++..+++.+
T Consensus 391 -~~~~~~~y~~lY~ 403 (405)
T PRK10125 391 -GQQMLEEYVNFYQ 403 (405)
T ss_pred -HHHHHHHHHHHHH
Confidence 5667777766654
No 109
>PHA02047 phage lambda Rz1-like protein
Probab=60.82 E-value=40 Score=31.08 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=45.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQLYPP 54 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~~~~~P 54 (699)
+.++.++-.+.|.++..+.++|...++|+..-++-+.+++-++++|.+=-..|
T Consensus 33 h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~P 85 (101)
T PHA02047 33 HEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRP 85 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence 46788999999999999999999999999999998999999988877544444
No 110
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=59.54 E-value=28 Score=30.08 Aligned_cols=53 Identities=9% Similarity=0.230 Sum_probs=34.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCc
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQA-QLAHTESLRQNSPQLYPP 54 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a-~~~~~e~~~~~~~~~~~P 54 (699)
+.++...+.+++.+++++.+.+.|-++|+.++++. ..+.-|.++++.=.+.+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~lgM~~p 76 (85)
T TIGR02209 23 QHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQLGMKLP 76 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCCC
Confidence 34566777888888888888888888888888872 223333334444334443
No 111
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=59.24 E-value=42 Score=38.91 Aligned_cols=85 Identities=22% Similarity=0.238 Sum_probs=49.8
Q ss_pred cchhhHHHHHhcCceEEEEeCCC-ccCCcccccCCcceEEeccC----CC----HHHHHH-HHhcCCHHHHHHHHHhhHH
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDN-VMLPFEEVLDWNKILIPLPV----AR----IPELHL-LLRSISDEDIVAFRHQGRQ 405 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~-~~LPF~dvIDW~~fsV~ipe----~~----l~~L~~-iL~sis~e~i~~Mrrq~r~ 405 (699)
|++.-++|||++|| |||.+ |- +-. .|+|.=..-.+.++. .+ +.+|.+ |.+-+.++...+|.++++.
T Consensus 404 gfgl~~lEAma~G~-PVI~~-dv~~G~--~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~ 479 (500)
T TIGR02918 404 GFGLTLMEAVGSGL-GMIGF-DVNYGN--PTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQ 479 (500)
T ss_pred cccHHHHHHHHhCC-CEEEe-cCCCCC--HHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 45677999999997 77777 52 222 356644444445541 22 444443 2222356678899999987
Q ss_pred HHHhhhhchHHHHHHHHHHHH
Q psy11113 406 VFTRYLATLQSQMDTLVAVVR 426 (699)
Q Consensus 406 v~~~yfss~~~iv~TtL~iL~ 426 (699)
.-++ |+ .+.++....++++
T Consensus 480 ~a~~-fs-~~~v~~~w~~ll~ 498 (500)
T TIGR02918 480 IAEG-FL-TANIIEKWKKLVR 498 (500)
T ss_pred HHHh-cC-HHHHHHHHHHHHh
Confidence 6555 33 3556666555553
No 112
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=58.15 E-value=33 Score=28.99 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=23.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
++..+++++.++++++.+.+.+.+.|+.+|++.
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777777777777777776
No 113
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=58.04 E-value=53 Score=39.16 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=25.1
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCC--ccccc-CCcceEEecc
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLP--FEEVL-DWNKILIPLP 377 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LP--F~dvI-DW~~fsV~ip 377 (699)
+|+.-.+|||++| +|||.+ |.--++ -.+++ +-....|.|.
T Consensus 486 ~fG~~~lEAma~G-~PvI~t-~~~gf~~~v~E~v~~~~~~gi~V~ 528 (590)
T cd03793 486 PWGYTPAECTVMG-IPSITT-NLSGFGCFMEEHIEDPESYGIYIV 528 (590)
T ss_pred CCCcHHHHHHHcC-CCEEEc-cCcchhhhhHHHhccCCCceEEEe
Confidence 3567789999999 599999 754331 02444 3334566665
No 114
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.62 E-value=24 Score=32.61 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=29.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
+...++++++++++++.+.+.+-++|+.+|+..+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46677888888888888888888888888888865
No 115
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.54 E-value=23 Score=30.78 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=17.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLA 39 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~ 39 (699)
|+||..+..|.-.++|+...+|..-+.|+.+-+|.+-+
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444544444444555544444433
No 116
>PRK09039 hypothetical protein; Validated
Probab=57.47 E-value=23 Score=39.22 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=27.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+.+|..++++|++++.++...+.+|+.+|.....++..+.++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777666655555544433
No 117
>KOG3215|consensus
Probab=56.69 E-value=24 Score=36.58 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=34.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
.|+..++++.+++.++|.+++.+.+-||-+|.+|+.
T Consensus 89 re~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi 124 (222)
T KOG3215|consen 89 REIENLVQKKLEIERSIQKARNKIELLKKQLHEAKI 124 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999987
No 118
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.61 E-value=21 Score=30.54 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=34.1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
|+..++-+..-+|+|.+.+.+.|.++++|+..+......++++.
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567778888999999999999999999999999988888874
No 119
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=56.17 E-value=21 Score=32.21 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhcC
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQ----LAHTESLRQNS 48 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~----~~~~e~~~~~~ 48 (699)
+++++..++...+.+.+++...++.|+ .++.||.+.|.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~ 66 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANT 66 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544444333 34457766665
No 120
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.00 E-value=18 Score=30.57 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=16.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKL 29 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l 29 (699)
+.+|+.++.++++++++....+.++++|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666666655
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=55.82 E-value=24 Score=37.03 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+.|+..+....+.++..+...+.+++.|+.+|++.+...+|+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667777777777777777777777776655554
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=55.49 E-value=1.4e+02 Score=36.47 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=49.4
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCH------HHHHHHHhcCCHHHHHHHHHhhHHHHHhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARI------PELHLLLRSISDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l------~~L~~iL~sis~e~i~~Mrrq~r~v~~~y 410 (699)
++.-++|||.+|| |||.+ |.-- ..|+|.=..-.+.++..+. ..|..+|...... .+|+++++..-+..
T Consensus 604 fp~vlLEAMA~G~-PVVat-~~gG--~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~--~~l~~~ar~~a~~~ 677 (694)
T PRK15179 604 LPNVLIEAQFSGV-PVVTT-LAGG--AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAAD--PGIARKAADWASAR 677 (694)
T ss_pred chHHHHHHHHcCC-eEEEE-CCCC--hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhcc--HHHHHHHHHHHHHh
Confidence 4677999999985 88888 6432 3466654555666665543 3455555543222 35667776554544
Q ss_pred hhchHHHHHHHHHHH
Q psy11113 411 LATLQSQMDTLVAVV 425 (699)
Q Consensus 411 fss~~~iv~TtL~iL 425 (699)
|+ .++++..++++.
T Consensus 678 FS-~~~~~~~~~~lY 691 (694)
T PRK15179 678 FS-LNQMIASTVRCY 691 (694)
T ss_pred CC-HHHHHHHHHHHh
Confidence 54 456777766654
No 123
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.10 E-value=28 Score=36.08 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11113 24 DKLDKLKISINQAQLAH 40 (699)
Q Consensus 24 ~~l~~l~~~i~~a~~~~ 40 (699)
.+.++|+.++++++...
T Consensus 139 ~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 139 EENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 124
>KOG4119|consensus
Probab=54.72 E-value=62 Score=28.32 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQL 51 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~~~ 51 (699)
.++.+++.++.+...|+.-=++-+.+|..++++-++.+..+.
T Consensus 7 ~~~~q~k~~VeqLk~e~~~~R~~vS~a~~el~~y~E~~~~~D 48 (71)
T KOG4119|consen 7 SKKPQMKKEVEQLKLEANIERIKVSKAAAELLEYCETHATED 48 (71)
T ss_pred cchHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhcCccC
Confidence 457788888888888887778888899999999999888766
No 125
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.66 E-value=23 Score=40.39 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
|+||+.+++++.+.+++..+.+.+|..+|.+|++.+.+++|.-.
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888888888888888888888888888888888877743
No 126
>PRK10073 putative glycosyl transferase; Provisional
Probab=53.39 E-value=36 Score=36.99 Aligned_cols=109 Identities=13% Similarity=0.082 Sum_probs=68.1
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC---CCCCCCCcCEEEEeCCCCCcc-ccCCCCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED---LRWPDIGVPVVVVRTNTNDLN-NRFKPYDVIE 626 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~---~~wp~~~vpV~vi~~~~nSLn-nRF~P~~~I~ 626 (699)
.+++||-+|++.+-|.+.|+.+.+-.+. -+|+|| ++..+.... ..|..-...|+++..+...++ .|=.=.....
T Consensus 7 ~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiV-dDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~~a~ 85 (328)
T PRK10073 7 KLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIV-NDGSTDNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLAVAT 85 (328)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEE-eCCCCccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHhCC
Confidence 5899999999999999999999754333 366666 433322110 012222234777765422211 1112234578
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHHhcCCCcccc
Q psy11113 627 TEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGF 661 (699)
Q Consensus 627 TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF 661 (699)
++-|+.+|+|-.+..+-|+-....-.+..--+|..
T Consensus 86 g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 86 GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 99999999999999998887777655543344433
No 127
>KOG4196|consensus
Probab=52.72 E-value=37 Score=32.86 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=32.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
+.+-..+++++|.|++++.+++.||+.+|...++++-...+
T Consensus 80 E~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~~ 120 (135)
T KOG4196|consen 80 EKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAVS 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34556677888888888888888888888888888876663
No 128
>PRK10018 putative glycosyl transferase; Provisional
Probab=52.56 E-value=17 Score=38.88 Aligned_cols=104 Identities=13% Similarity=0.150 Sum_probs=67.4
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCCCCCCC--CCcCEEEEeCCCCC-c-cccCCCCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPREDLRWPD--IGVPVVVVRTNTND-L-NNRFKPYDVIE 626 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~~~wp~--~~vpV~vi~~~~nS-L-nnRF~P~~~I~ 626 (699)
..|+||-||++...|.+.|+.+.+-.+- -+|+||=++.........+-. -...|++++.+.|. . .+|-.-.....
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~ 85 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQ 85 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4899999999999999999988643222 377777443331000001100 12367888776663 1 11222334568
Q ss_pred ccEEEEecCCcccCHHHHHHHHHHHHhcC
Q psy11113 627 TEAVLNMDDDVYLRHDEIMFAFRVWREQR 655 (699)
Q Consensus 627 TeAVLslDDDi~l~~del~FaF~vWr~~P 655 (699)
.+-|+.||+|..+.++.|+.....+.+.+
T Consensus 86 g~~I~~lDaDD~~~p~~l~~~~~~~~~~~ 114 (279)
T PRK10018 86 GEYITGIDDDDEWTPNRLSVFLAHKQQLV 114 (279)
T ss_pred CCEEEEECCCCCCCccHHHHHHHHHHhCC
Confidence 99999999999999999998888776643
No 129
>PLN02316 synthase/transferase
Probab=52.53 E-value=72 Score=40.54 Aligned_cols=86 Identities=17% Similarity=0.209 Sum_probs=45.5
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCc------------ceEEeccCCCHHHHHHHH-hcCC--HHHHHHHH
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWN------------KILIPLPVARIPELHLLL-RSIS--DEDIVAFR 400 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~------------~fsV~ipe~~l~~L~~iL-~sis--~e~i~~Mr 400 (699)
+++.-.+|||++||+||+-. .+ =|| +-|.|+. .-.+.++..+...|...| +.+. .+.-..|+
T Consensus 931 P~GLvqLEAMa~GtppVvs~-vG-GL~-DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~ 1007 (1036)
T PLN02316 931 PCGLTQLTAMRYGSIPVVRK-TG-GLF-DTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFN 1007 (1036)
T ss_pred CccHHHHHHHHcCCCeEEEc-CC-CcH-hhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35677899999999999954 32 233 2344552 346677777776544432 2222 12233344
Q ss_pred HhhHHHHHhhhhchHHHHHHHHHHH
Q psy11113 401 HQGRQVFTRYLATLQSQMDTLVAVV 425 (699)
Q Consensus 401 rq~r~v~~~yfss~~~iv~TtL~iL 425 (699)
+.++..-+.-|+ -+.++...+++.
T Consensus 1008 ~~~r~~m~~dFS-W~~~A~~Y~~LY 1031 (1036)
T PLN02316 1008 SLCKRVMEQDWS-WNRPALDYMELY 1031 (1036)
T ss_pred HHHHHHHHhhCC-HHHHHHHHHHHH
Confidence 444443344343 233444444433
No 130
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=52.29 E-value=29 Score=38.21 Aligned_cols=106 Identities=12% Similarity=0.155 Sum_probs=65.9
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC------CCCCCCCcCEEEEeCCCC-----CccccC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED------LRWPDIGVPVVVVRTNTN-----DLNNRF 619 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~------~~wp~~~vpV~vi~~~~n-----SLnnRF 619 (699)
..|++|-+|+..+.|.+.|+.+.+..+= -+|+|+=++...+... ...|. ..|+++....+ +.+|-.
T Consensus 42 ~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~--~~i~~v~~~~~~G~~~K~~~l~ 119 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPD--ADIDLVIDARRHGPNRKVSNLI 119 (373)
T ss_pred CeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCC--CceEEEECCCCCCCChHHHHHH
Confidence 4899999999999999999999765432 4776652222222111 12232 44666644332 111111
Q ss_pred CCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC-Cccc
Q psy11113 620 KPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD-RIVG 660 (699)
Q Consensus 620 ~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd-RiVG 660 (699)
.-...-++|-|+.+|+|+.++.+-|+-..... +.|+ -+|+
T Consensus 120 ~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~-~~~~v~~V~ 160 (373)
T TIGR03472 120 NMLPHARHDILVIADSDISVGPDYLRQVVAPL-ADPDVGLVT 160 (373)
T ss_pred HHHHhccCCEEEEECCCCCcChhHHHHHHHHh-cCCCcceEe
Confidence 11345689999999999999999999777666 3444 3443
No 131
>PLN00142 sucrose synthase
Probab=50.80 E-value=53 Score=40.59 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=55.0
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc------CCHHHHHHHHHhhHHHHHh
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS------ISDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s------is~e~i~~Mrrq~r~v~~~ 409 (699)
+++.-++|||++|| |||.+ |.--+ .|+|.=..-.+.++..+..++.+.|.. -.++...+|.++++.--..
T Consensus 678 gFGLvvLEAMA~Gl-PVVAT-dvGG~--~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e 753 (815)
T PLN00142 678 AFGLTVVEAMTCGL-PTFAT-CQGGP--AEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYE 753 (815)
T ss_pred CCCHHHHHHHHcCC-CEEEc-CCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 35677999999997 77777 64322 356655667788888887776554322 2466778888887643333
Q ss_pred hhhchHHHHHHHHHHH
Q psy11113 410 YLATLQSQMDTLVAVV 425 (699)
Q Consensus 410 yfss~~~iv~TtL~iL 425 (699)
.|+ -+.++..++++.
T Consensus 754 ~FS-We~~A~rll~L~ 768 (815)
T PLN00142 754 CYT-WKIYAERLLTLG 768 (815)
T ss_pred hCC-HHHHHHHHHHHH
Confidence 333 455666666655
No 132
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=50.74 E-value=38 Score=32.38 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=31.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
.|...|....+++.++|...+.+...||.+|+.|+...
T Consensus 74 ~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 74 RERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888999989999999988888887643
No 133
>PRK11637 AmiB activator; Provisional
Probab=50.47 E-value=31 Score=39.03 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=18.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+|..++.+++.++++|...+.+++.++.+|++++.++.++
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444454444444444
No 134
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=50.25 E-value=69 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQLYPPL 55 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~~~~~P~ 55 (699)
+.+++++-.+.+.+|.+||.++++..+. .-+.++-|+.-.|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~--~qIk~diPe~kvkF 43 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE--FQIKEDIPEKKVKF 43 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCCccccCcC
Confidence 4566666667777777777777765553 22344556655554
No 135
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.85 E-value=44 Score=30.80 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=37.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..+..++|.++..|.....+++.|+..++.+|..++|++.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999999999999999864
No 136
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.66 E-value=34 Score=37.45 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=14.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
++..+..++++.++++.+.+.+|++++..|+.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 137
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=49.65 E-value=20 Score=39.74 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=46.7
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCC---cceEEeccCCCHHHHHHHHhc-C-CHHHHHHHHHhhHHHHHhhhh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDW---NKILIPLPVARIPELHLLLRS-I-SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW---~~fsV~ipe~~l~~L~~iL~s-i-s~e~i~~Mrrq~r~v~~~yfs 412 (699)
..-++||+++|| |||.+ +.. --|.++++- ..+.+. ..+..+|.+.|.. + .++...+|.++++...+..
T Consensus 334 g~~~lEAma~G~-PVI~g-~~~-~~~~e~~~~~~~~g~~~~--~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~-- 406 (425)
T PRK05749 334 GHNPLEPAAFGV-PVISG-PHT-FNFKEIFERLLQAGAAIQ--VEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN-- 406 (425)
T ss_pred CCCHHHHHHhCC-CEEEC-CCc-cCHHHHHHHHHHCCCeEE--ECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC--
Confidence 345899999996 88876 432 123343322 233333 4456665554433 2 3666788888888766554
Q ss_pred chHHHHHHHHHHHHh
Q psy11113 413 TLQSQMDTLVAVVRD 427 (699)
Q Consensus 413 s~~~iv~TtL~iL~~ 427 (699)
..+++.+++.|.+
T Consensus 407 --~~~~~~~~~~l~~ 419 (425)
T PRK05749 407 --QGALQRTLQLLEP 419 (425)
T ss_pred --ccHHHHHHHHHHH
Confidence 3455555555554
No 138
>PRK00295 hypothetical protein; Provisional
Probab=49.48 E-value=49 Score=28.39 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=35.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++-+..-||+|-..+.+.|.++++|+..+......++++
T Consensus 11 E~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 11 ESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677778889999999999999999999998887777776
No 139
>PHA01750 hypothetical protein
Probab=49.43 E-value=12 Score=32.19 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+.-|-+++|+.....|++.+++.+...+.+.+|.-+
T Consensus 35 AvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 35 AVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777643
No 140
>PRK15396 murein lipoprotein; Provisional
Probab=49.32 E-value=31 Score=30.55 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhcC
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQL----AHTESLRQNS 48 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~----~~~e~~~~~~ 48 (699)
++|+|+.++...+.+.++++..++.++. +..||.+.|.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~ 67 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQ 67 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433322 3446655553
No 141
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=48.20 E-value=35 Score=34.72 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=63.0
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcC-CCC--ccEEEEEecCCCCCCCC--CCCC-CC-CcCEEEEeCCCCC-----ccccC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNN-LPY--LNKVVVVWNSVQPPRED--LRWP-DI-GVPVVVVRTNTND-----LNNRF 619 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~-~p~--l~kIvVvWn~~~~pp~~--~~wp-~~-~vpV~vi~~~~nS-----LnnRF 619 (699)
..|+||-+|+....|..++..+.+ ... --+|+||=+....-... ..+- .. ...|.++....|. +|.=+
T Consensus 10 ~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~ 89 (243)
T PLN02726 10 KYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGL 89 (243)
T ss_pred eEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHH
Confidence 699999999988777766665542 121 23777773322111000 0110 01 1235555544441 22212
Q ss_pred CCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhc-CCCccc
Q psy11113 620 KPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQ-RDRIVG 660 (699)
Q Consensus 620 ~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~-PdRiVG 660 (699)
....++.|+.+|.|..++.+.|+-.+..+.+. .+=++|
T Consensus 90 ---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 90 ---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred ---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 23578999999999999999999998888665 444444
No 142
>PRK04406 hypothetical protein; Provisional
Probab=47.93 E-value=50 Score=28.93 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=33.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..|+-+..-||+|-+.+.+.|.++++|+..+......++++
T Consensus 17 E~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 17 ECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677777888899999999999999998888886666665
No 143
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=47.41 E-value=65 Score=29.12 Aligned_cols=45 Identities=13% Similarity=0.255 Sum_probs=26.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
++..++.++..++..+.++..+.+.++..+++|+.+=..|.+|=+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445555566666666666666666666666666666555555544
No 144
>PRK04325 hypothetical protein; Provisional
Probab=46.97 E-value=54 Score=28.58 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=34.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++-+..-||+|-..|.+.|.++++|+..+......++++
T Consensus 15 E~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 15 EIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777889999999999999999998888887766665
No 145
>PRK00736 hypothetical protein; Provisional
Probab=46.40 E-value=78 Score=27.15 Aligned_cols=42 Identities=2% Similarity=0.147 Sum_probs=35.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++-+..-||+|-..|.+.|.++++|+..+......++++
T Consensus 11 E~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 11 EIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677778889999999999999999999988887777665
No 146
>PRK09343 prefoldin subunit beta; Provisional
Probab=46.38 E-value=65 Score=30.45 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=41.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSP 49 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~ 49 (699)
++.+..++|-++-.|.....+.+.|+..++..|..++|++..-.+
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~ 117 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYP 117 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999999999999999999999887665
No 147
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.47 E-value=39 Score=35.13 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
.||+||+.|..+..+|...+..+.+|+.++.+|+.+.+
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs 70 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS 70 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888888888888888887776554
No 148
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=45.43 E-value=16 Score=42.36 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=17.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
|++.++ |||+||+||.+.+.+++.++..|+.
T Consensus 26 ~~~~~q-kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred hhHHHH-HHHHHHHHHHHHHHhhcccccccch
Confidence 444444 6666666666666665544444433
No 149
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=45.34 E-value=51 Score=36.44 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=46.7
Q ss_pred hHHHHHhcCceEEEEeCCCccCCcccccC-----CcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 340 RLYEALKYGAVPVIVGGDNVMLPFEEVLD-----WNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d~~~LPF~dvID-----W~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
-+.||+++|+ |||+. +. .|=++..| =..+++.+ .+..++.+.|..+ .++.+.+|+++++..-+. +
T Consensus 285 tl~EA~a~G~-PvI~~-~~--~pgqe~~N~~~~~~~G~g~~~--~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~-~- 356 (391)
T PRK13608 285 TISEGLARCI-PMIFL-NP--APGQELENALYFEEKGFGKIA--DTPEEAIKIVASLTNGNEQLTNMISTMEQDKIK-Y- 356 (391)
T ss_pred HHHHHHHhCC-CEEEC-CC--CCCcchhHHHHHHhCCcEEEe--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-C-
Confidence 4789999885 88887 53 24333322 12234333 2444444443332 467788999998876444 3
Q ss_pred chHHHHHHHHHHHHh
Q psy11113 413 TLQSQMDTLVAVVRD 427 (699)
Q Consensus 413 s~~~iv~TtL~iL~~ 427 (699)
+.+.+++.+++.+..
T Consensus 357 s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 357 ATQTICRDLLDLIGH 371 (391)
T ss_pred CHHHHHHHHHHHhhh
Confidence 345677777666644
No 150
>PRK09039 hypothetical protein; Validated
Probab=45.09 E-value=27 Score=38.71 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=26.8
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
|+.||+.++.++..++.+|...+.+....+..|+..+..+..++.+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666655555555555555555555555544
No 151
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.64 E-value=41 Score=36.78 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=40.0
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|..+|+.++-+.+-+.|++..++.+.+.||+.+-.++.++||-
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEK 177 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREK 177 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999885
No 152
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.19 E-value=70 Score=29.03 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 7 SYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
.+.+++++++.++.....|.++|+..++.++.+-.+++.
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888888887777653
No 153
>PRK02119 hypothetical protein; Provisional
Probab=44.12 E-value=63 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=33.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++-+..-+|+|-..+.+.|.++++|+..+......++++
T Consensus 15 E~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 15 EMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666777788888888888899999998888887766665
No 154
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=43.74 E-value=58 Score=34.88 Aligned_cols=85 Identities=14% Similarity=0.057 Sum_probs=46.7
Q ss_pred hhHHHHHhcCceEEEEeCCCccCC-----cccccCCcceEEeccCCC--HHHHHHHHhcC--CHHHHHHHHHhhHHHHHh
Q psy11113 339 MRLYEALKYGAVPVIVGGDNVMLP-----FEEVLDWNKILIPLPVAR--IPELHLLLRSI--SDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 339 ~Rl~eAL~~GCIPVIis~d~~~LP-----F~dvIDW~~fsV~ipe~~--l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~ 409 (699)
.-++|||++|+--|++. ...... ..+.|--....+.++.++ ...|.+.++.+ .++...+|+++++..-+.
T Consensus 263 ~~~~Ea~~~g~Pvv~~~-~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~ 341 (357)
T PRK00726 263 STVAELAAAGLPAILVP-LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKP 341 (357)
T ss_pred HHHHHHHHhCCCEEEec-CCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCc
Confidence 44889999997555543 321111 123333345677777666 45555544332 256668888888754332
Q ss_pred hhhchHHHHHHHHHHHH
Q psy11113 410 YLATLQSQMDTLVAVVR 426 (699)
Q Consensus 410 yfss~~~iv~TtL~iL~ 426 (699)
+ +.+.+++-.++.+|
T Consensus 342 -~-~~~~~~~~~~~~~~ 356 (357)
T PRK00726 342 -D-AAERLADLIEELAR 356 (357)
T ss_pred -C-HHHHHHHHHHHHhh
Confidence 2 23456666665554
No 155
>PRK15396 murein lipoprotein; Provisional
Probab=43.71 E-value=82 Score=27.97 Aligned_cols=39 Identities=8% Similarity=0.271 Sum_probs=18.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++.+++.|+.++.+...+.+.++..+++|+.+-.-+
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ra 65 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555554444444333
No 156
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=43.07 E-value=1.6e+02 Score=30.81 Aligned_cols=63 Identities=16% Similarity=-0.004 Sum_probs=33.3
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC-C-HHHHHHHHHhhH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI-S-DEDIVAFRHQGR 404 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si-s-~e~i~~Mrrq~r 404 (699)
++.-++|||++||-. |.+ |.-. ..+++.= ........++..++.+.+..+ . ++....|+...+
T Consensus 279 ~~~~~lEAma~G~Pv-I~s-~~~~--~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~ 343 (358)
T cd03812 279 LPLVLIEAQASGLPC-ILS-DTIT--KEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKK 343 (358)
T ss_pred CCHHHHHHHHhCCCE-EEE-cCCc--hhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhh
Confidence 466799999999855 455 4322 2344433 344455555556665544333 2 233344444444
No 157
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=42.44 E-value=52 Score=35.05 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=34.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..+..++|++++||.+.+-.++.+.-+|+|++..++|.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999888886
No 158
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.87 E-value=34 Score=30.64 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=56.3
Q ss_pred CCeEEEEEeccCcHHHHHHHHHhcCCCCcc-EEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCC-----CccccCCCC
Q psy11113 551 EQFTIIILTYERDQVLINSLSRLNNLPYLN-KVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTN-----DLNNRFKPY 622 (699)
Q Consensus 551 ~~FT~vI~ty~R~~~L~~~l~~l~~~p~l~-kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~n-----SLnnRF~P~ 622 (699)
.+++++|-||++...|.+.|+.+.+-.+-. +|+||=+........ ..+......+.......| .+|.-+
T Consensus 3 ~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 79 (291)
T COG0463 3 PKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNAGL--- 79 (291)
T ss_pred ccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHhhH---
Confidence 368999999999999999999998655544 666664433222110 001100012333333333 122222
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHH
Q psy11113 623 DVIETEAVLNMDDDVYLRHDEIMFAFRVW 651 (699)
Q Consensus 623 ~~I~TeAVLslDDDi~l~~del~FaF~vW 651 (699)
.....+.|+.+|.|.. ..+.+.-.+...
T Consensus 80 ~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 80 EYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 1233489999999999 888777644444
No 159
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=41.86 E-value=39 Score=33.19 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=62.8
Q ss_pred EEEEeccCcHHHHHHHHHhcCC-----CCccEEEEEecCCCCCCCC--CCCC-CCCcCEEEEeCCCCC-----ccccCCC
Q psy11113 555 IIILTYERDQVLINSLSRLNNL-----PYLNKVVVVWNSVQPPRED--LRWP-DIGVPVVVVRTNTND-----LNNRFKP 621 (699)
Q Consensus 555 ~vI~ty~R~~~L~~~l~~l~~~-----p~l~kIvVvWn~~~~pp~~--~~wp-~~~vpV~vi~~~~nS-----LnnRF~P 621 (699)
+||-+|+..+.|.+.|+.+.+. +.-.+|+||=++...-... ..+. ..+..|++++.+.|. +|.=
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g--- 77 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAG--- 77 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHH---
Confidence 5788998888787777777542 2456888884433211100 0111 112236777776551 2211
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHh-cCCCccc
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWRE-QRDRIVG 660 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~-~PdRiVG 660 (699)
......|-|+.+|.|..++.+.|+-..+...+ ..+-++|
T Consensus 78 ~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 78 MLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred HHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 12356799999999999999999988776333 3444555
No 160
>PRK10698 phage shock protein PspA; Provisional
Probab=41.67 E-value=67 Score=33.49 Aligned_cols=46 Identities=4% Similarity=0.186 Sum_probs=33.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
..+..|...+++.+..+.+.+..+.+|+..|++|+.-+..++.+.+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777888888888887777777766554
No 161
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.60 E-value=50 Score=36.19 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=30.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
+.+|+..+++++++++++.+.+.+++.++.++++.+.++.|+-
T Consensus 222 ~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 222 KEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777777777777777777663
No 162
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.06 E-value=48 Score=35.36 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=34.1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
|+.|+.+.+++..+|++|+..++++++..+.+......++.+
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~ 96 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALED 96 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 467889999999999999999999999999555555555555
No 163
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.04 E-value=60 Score=33.49 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=34.3
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQD---KLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~---~l~~l~~~i~~a~~~~~e~~ 44 (699)
+|.|+..+.++-|++|++.++++. .|+.||.++.+.+....-+.
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~ll 93 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999998884 57777777776666555443
No 164
>PRK02793 phi X174 lysis protein; Provisional
Probab=41.04 E-value=96 Score=26.88 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=34.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++-+..-||+|-..+.+.|.++++|+..+......++++
T Consensus 14 E~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 14 ESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677778888999999999999999998888887777775
No 165
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=40.63 E-value=53 Score=37.11 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=65.1
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCC-----CccccCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTN-----DLNNRFKPYD 623 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~n-----SLnnRF~P~~ 623 (699)
..|++|-+|+....|.+.|+++.+..+- -+|+||=++....... ..+-.-...++++..+.| .+|.=. .
T Consensus 76 ~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl---~ 152 (444)
T PRK14583 76 LVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA---A 152 (444)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH---H
Confidence 5899999999988899999998764332 3677774433221110 011111123666664433 122111 2
Q ss_pred CCCccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 624 VIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 624 ~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
.-..|-|+.+|.|..++.+.|+...+...++|+
T Consensus 153 ~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~ 185 (444)
T PRK14583 153 AARSEYLVCIDGDALLDKNAVPYLVAPLIANPR 185 (444)
T ss_pred hCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC
Confidence 256899999999999999999988887766663
No 166
>COG1422 Predicted membrane protein [Function unknown]
Probab=40.62 E-value=74 Score=32.97 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=38.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQ-----DKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~-----~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
|.+.+.+++...|.|++...++ .+|+||+..-.++...|+|.+..+-
T Consensus 71 ~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 71 QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQF 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888888988888888 4788888888888889999877554
No 167
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.57 E-value=76 Score=30.00 Aligned_cols=43 Identities=12% Similarity=0.280 Sum_probs=36.0
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|+.++...-.++..+++++.........|+.++..++..++|+
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL 47 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEEL 47 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777778888888888888888888888888888888888
No 168
>PF14282 FlxA: FlxA-like protein
Probab=40.51 E-value=68 Score=29.65 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 16 KQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 16 ~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
++.+..+|.++..|+..|.+++..+.|.....
T Consensus 50 ~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455667777777777777777765444
No 169
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.33 E-value=44 Score=38.75 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=23.0
Q ss_pred hhhhhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDIL-------HYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~-------~~~~~l~~l~~~i~~a~~~~ 40 (699)
...+.+.++++++++|+. ..+.+|+.|+.++++.+.++
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444 45566667777777777666
No 170
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=40.20 E-value=32 Score=37.64 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=65.6
Q ss_pred CCCCeEEEEEeccCcHHHHHHHHHhcCC---------CCccEEEEEecCCCCCCCC--CCCCC----CCcCEEEEeCCCC
Q psy11113 549 QREQFTIIILTYERDQVLINSLSRLNNL---------PYLNKVVVVWNSVQPPRED--LRWPD----IGVPVVVVRTNTN 613 (699)
Q Consensus 549 p~~~FT~vI~ty~R~~~L~~~l~~l~~~---------p~l~kIvVvWn~~~~pp~~--~~wp~----~~vpV~vi~~~~n 613 (699)
+.-.+++||-+|+..+.|.+.|+.+.++ ..--+|+||=++...-... ..+-. ....++++....|
T Consensus 68 ~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 68 SDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 4557999999999888888777776431 2245888884433211000 01100 1234788877666
Q ss_pred C-----ccccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHh
Q psy11113 614 D-----LNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWRE 653 (699)
Q Consensus 614 S-----LnnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~ 653 (699)
. +|.=+ ..-..|-|+.+|.|..++.++++-..+..++
T Consensus 148 ~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 148 KGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred CChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 22111 1235789999999999999999999998876
No 171
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=40.13 E-value=98 Score=27.32 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=30.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
++..++.-+..+...|.+.+.+++.++..++.++..+.++..
T Consensus 46 ~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~ 87 (123)
T PF02050_consen 46 QLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARR 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777777777777777777777777654
No 172
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=39.81 E-value=50 Score=39.71 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=37.6
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
|+.||..++.+|.+++++|.....|+.+-+.+++++...+++...+
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999887776666443
No 173
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.64 E-value=81 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.326 Sum_probs=11.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISI 33 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i 33 (699)
+.++...++.++.++.+...++++++-.|
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333433333333333333333
No 174
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.59 E-value=97 Score=27.00 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=15.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
|+.++.+++++|.+-...+.+-+.|+.+.++.+
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444555555555544444444444444444444
No 175
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=39.34 E-value=58 Score=33.36 Aligned_cols=99 Identities=19% Similarity=0.281 Sum_probs=61.5
Q ss_pred EEEEeccCc-HHHHHHHHHhcCCCCc-----------cEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCC----cccc
Q psy11113 555 IIILTYERD-QVLINSLSRLNNLPYL-----------NKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTND----LNNR 618 (699)
Q Consensus 555 ~vI~ty~R~-~~L~~~l~~l~~~p~l-----------~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nS----LnnR 618 (699)
|||-+|+-. ..|.++|+.+.+..+- -+|+||=.+... . -..+.++ ++..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d--~-------------~~gk~~~~~~~~~~~ 65 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK--K-------------NRGKRDSQLWFFNYF 65 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc--c-------------cCcchHHHHHHHHHH
Confidence 478888886 7899999999876663 255555222222 0 0111111 1100
Q ss_pred CCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCcccccc
Q psy11113 619 FKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHAWD 669 (699)
Q Consensus 619 F~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~wd 669 (699)
..-...-++|.|+.+|.|..+..+-|+.......++| ++.|..++.+..+
T Consensus 66 ~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p-~vg~v~g~~~~~~ 115 (244)
T cd04190 66 CRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDP-EIGGVCGEIHPMG 115 (244)
T ss_pred HHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCC-CEEEEEeeeEEcC
Confidence 0111124899999999999999999998877666677 5556667665533
No 176
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=38.78 E-value=1e+02 Score=26.48 Aligned_cols=43 Identities=7% Similarity=0.173 Sum_probs=28.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
+..+..|+|++.+...+.+.|=..|+.++++.+.+..-++++|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777776666666665555554
No 177
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.77 E-value=82 Score=31.62 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=27.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
.|-..+..+.+++++.+...+.|++.|+..++.-+-.++.++.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667777777777777777666666666554
No 178
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=38.73 E-value=76 Score=26.79 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=15.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
.-+...|..|+.||.+.++++.+-+.+-+.|.
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAe 55 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAAAE 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544444444443
No 179
>PF14282 FlxA: FlxA-like protein
Probab=38.51 E-value=66 Score=29.73 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 21 HYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 21 ~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
.++.+...|+..|.+.+..+.++..
T Consensus 48 ~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 48 QKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777776666665543
No 180
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=38.21 E-value=78 Score=28.97 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=33.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
-+.-++.+++.++..+.+.+.++..++..|++.+..+.+...
T Consensus 78 A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 78 AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456678888888888888888888888888888887777643
No 181
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=37.76 E-value=79 Score=30.52 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=12.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
+..+...++.++..+..++.++..++....+++.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 182
>PRK14161 heat shock protein GrpE; Provisional
Probab=37.40 E-value=75 Score=32.25 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=19.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
|..+...+++++++++++...+.++.|+.++.+..+
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566655555555555555555544
No 183
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=37.24 E-value=41 Score=35.54 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=62.7
Q ss_pred EEEEEeccCc------HHHHHHHHHhcC--CCCccEEEEEecCCCCCC-CC-CCC-CCCCcCEEEEeCCCCCccccCCC-
Q psy11113 554 TIIILTYERD------QVLINSLSRLNN--LPYLNKVVVVWNSVQPPR-ED-LRW-PDIGVPVVVVRTNTNDLNNRFKP- 621 (699)
Q Consensus 554 T~vI~ty~R~------~~L~~~l~~l~~--~p~l~kIvVvWn~~~~pp-~~-~~w-p~~~vpV~vi~~~~nSLnnRF~P- 621 (699)
|+||-++.+. +.|...|..+.. .+.--+||||-+.....- .. ..+ ...+.. .++....+. ..+.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~-~~i~~~~~~---~~f~~ 76 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFI-RYIRHEDNG---EPFSR 76 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccCce-EEEEcCCCC---CCcCH
Confidence 5788888665 334444666654 355668999988775441 00 000 111211 133222111 1111
Q ss_pred -------CCCCCccEEEEecCCcccCHHHHHHHHH---HHHhcCCCccccCCc
Q psy11113 622 -------YDVIETEAVLNMDDDVYLRHDEIMFAFR---VWREQRDRIVGFPGR 664 (699)
Q Consensus 622 -------~~~I~TeAVLslDDDi~l~~del~FaF~---vWr~~PdRiVGF~~R 664 (699)
...-+++-|+.+|-|+.++.+-|+-+.. -=.+.++.++-++..
T Consensus 77 a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~ 129 (281)
T PF10111_consen 77 AKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCL 129 (281)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 1125899999999999999999999988 223467777777643
No 184
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=37.09 E-value=74 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
-+..-++|.++...+.+|+.++-.|.+|+.++.
T Consensus 42 ~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 42 LKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445888888888888888888888888765
No 185
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=36.99 E-value=1.4e+02 Score=23.52 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 10 SKIDQIKQDILH-YQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 10 ~~~e~~~~~i~~-~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
...|.+||+|.. ...||.++|.+|-.|-. .|+.+
T Consensus 3 ~dle~~KqEIL~EvrkEl~K~K~EIIeA~~--~eL~r 37 (40)
T PF08776_consen 3 SDLERLKQEILEEVRKELQKVKEEIIEAIR--QELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhc
Confidence 356788888765 45889999988887743 44443
No 186
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.47 E-value=48 Score=32.68 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=22.8
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
|..+|..++.++.++++++..++.||..|..+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34577778888888888888877777665443
No 187
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.46 E-value=86 Score=30.25 Aligned_cols=39 Identities=5% Similarity=0.253 Sum_probs=20.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
..+..+..+++++++++...+.+..+++..+..++..++
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554444443
No 188
>PRK14011 prefoldin subunit alpha; Provisional
Probab=36.36 E-value=86 Score=30.78 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=31.5
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
|+.|+..+-..++.+++++.+.+..++.|+..+.....++
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~i 40 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSI 40 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888877777776655
No 189
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.08 E-value=87 Score=32.47 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=22.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|.+++..++.+.+++++..+.+.+|..++.+++.++.+....
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555566666666666555555544443
No 190
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=35.97 E-value=2.6e+02 Score=30.28 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=44.6
Q ss_pred hHHHHHhcCceEEEEeCCCccCCccc-----ccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhh
Q psy11113 340 RLYEALKYGAVPVIVGGDNVMLPFEE-----VLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLA 412 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d~~~LPF~d-----vIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfs 412 (699)
-++||+.+|+ |||+. +. .|-.+ .+.-..+.+.. .+..+|.+.+..+ .++...+|+++++.+.+.+
T Consensus 285 t~~EA~a~g~-PvI~~-~~--~~g~~~~n~~~~~~~G~~~~~--~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~-- 356 (380)
T PRK13609 285 TLSEAAALGV-PVILY-KP--VPGQEKENAMYFERKGAAVVI--RDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPE-- 356 (380)
T ss_pred HHHHHHHhCC-CEEEC-CC--CCCcchHHHHHHHhCCcEEEE--CCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCc--
Confidence 4789999997 57776 42 12111 12223344432 4555555544332 4667888988887655543
Q ss_pred chHHHHHHHHHHH
Q psy11113 413 TLQSQMDTLVAVV 425 (699)
Q Consensus 413 s~~~iv~TtL~iL 425 (699)
+.+++++.+++.+
T Consensus 357 s~~~i~~~i~~~~ 369 (380)
T PRK13609 357 PADHIVDDILAEN 369 (380)
T ss_pred hHHHHHHHHHHhh
Confidence 5566776666544
No 191
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.92 E-value=94 Score=32.11 Aligned_cols=44 Identities=9% Similarity=0.197 Sum_probs=27.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
..+..|...++.++..+.+.+..|..|+..|+.++....+++.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar 142 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIR 142 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666655544443
No 192
>PRK00846 hypothetical protein; Provisional
Probab=35.83 E-value=1e+02 Score=27.32 Aligned_cols=43 Identities=2% Similarity=-0.109 Sum_probs=35.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
+..++-+..-||++-+.+.+.|.++++|+..+....-.++|+.
T Consensus 19 E~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 19 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556667777889999999999999999999988888888874
No 193
>KOG2264|consensus
Probab=35.71 E-value=63 Score=38.22 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=24.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
|+..+..|-.+++.+|.++.++.+.||.+|.|+|.++
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL 130 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL 130 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4555666666666667777777777777776666544
No 194
>KOG3088|consensus
Probab=35.64 E-value=40 Score=36.71 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11113 16 KQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 16 ~~~i~~~~~~l~~l~~~i~~ 35 (699)
++|++++|.||+|-+.+|..
T Consensus 66 q~eL~~rqeEL~Rke~ELdR 85 (313)
T KOG3088|consen 66 QAELLKKQEELRRKEQELDR 85 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444443
No 195
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.18 E-value=1.1e+02 Score=26.32 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
|..+|+.|+.+.+.+.+.+...+.++..|..+=+.|...+.+|.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~ 46 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAY 46 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888777777777776655544444444443
No 196
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.78 E-value=79 Score=28.18 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=14.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDK 28 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~ 28 (699)
..|+.+++.+||+|..=.....+.+.
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666654444444443
No 197
>KOG2630|consensus
Probab=34.66 E-value=67 Score=34.19 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=39.2
Q ss_pred cccccccccCCCCCCCcEEEeCCCCCC---------c----------------cccccHHHHHHHHHHHhcCC----CCC
Q psy11113 76 MSECFDFSRCSLTSGFPMFVYDPEKYY---------P----------------AWKISLFLKSTIYQALKFNP----HFT 126 (699)
Q Consensus 76 m~~CFD~sRC~~~~~fkVYVY~~~~~~---------~----------------~~~~~~~~~~~i~~~l~~s~----~~T 126 (699)
+.+.-+.=+|-...|++||||..+.-. + |.+.+...|.+|.+.|..++ |.|
T Consensus 125 ~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig~s~~eiLfLT 204 (254)
T KOG2630|consen 125 YADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTTIGLKVESQSYKKIGHLIGKSPREILFLT 204 (254)
T ss_pred cchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhccccceehhHHHHHHHHHhCCChhheEEec
Confidence 455666677877789999999877521 1 34555667788888888765 556
Q ss_pred CCccCc
Q psy11113 127 SNPKEA 132 (699)
Q Consensus 127 ~dP~eA 132 (699)
+.|.||
T Consensus 205 d~~~Ea 210 (254)
T KOG2630|consen 205 DVPREA 210 (254)
T ss_pred cChHHH
Confidence 666554
No 198
>PRK14162 heat shock protein GrpE; Provisional
Probab=34.39 E-value=1e+02 Score=31.74 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=27.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
|.++..+..+++++++++...+.++.|+.++.+..+.
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777778888888888888888777777777654
No 199
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.33 E-value=86 Score=37.44 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=32.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
.+|..+..++|.++.++.+.+.+++++|..|+..+..+.++.+.
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777666543
No 200
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.07 E-value=1.5e+02 Score=25.76 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=14.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
|+||..+..+..+++.+....+.+..+|+.+-++
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433333
No 201
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=34.06 E-value=86 Score=33.12 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=36.1
Q ss_pred hhHHHHHhcCceEEEEeCCCccCCc----ccccCCcceEEeccCCC--HHHHHHHHhcC--CHHHHHHHHHhhHH
Q psy11113 339 MRLYEALKYGAVPVIVGGDNVMLPF----EEVLDWNKILIPLPVAR--IPELHLLLRSI--SDEDIVAFRHQGRQ 405 (699)
Q Consensus 339 ~Rl~eAL~~GCIPVIis~d~~~LPF----~dvIDW~~fsV~ipe~~--l~~L~~iL~si--s~e~i~~Mrrq~r~ 405 (699)
.-++|||.+|+ |||+........- .+.+.-....+.++..+ ..+|.+.|+.+ .++...+|.++++.
T Consensus 261 ~~l~Ea~~~g~-Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 334 (348)
T TIGR01133 261 STVAELAAAGV-PAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARK 334 (348)
T ss_pred hHHHHHHHcCC-CEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 34789999986 7666512110100 12344456666676554 55555443321 35567778877764
No 202
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=33.81 E-value=79 Score=30.74 Aligned_cols=38 Identities=13% Similarity=0.309 Sum_probs=21.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
.++..+..+++++++++.+.+.++.++..++++.+...
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666665555554433
No 203
>KOG3335|consensus
Probab=33.56 E-value=36 Score=34.56 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.|-|.-++++...+.+++.|+..|++.+....++
T Consensus 99 ~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 99 KKEEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666665555555
No 204
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.34 E-value=74 Score=29.49 Aligned_cols=31 Identities=13% Similarity=0.058 Sum_probs=21.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
+.++..+++++++++++-.+.+.|+++|+..
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 5566666777777777777777777777653
No 205
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.23 E-value=1.8e+02 Score=28.58 Aligned_cols=47 Identities=30% Similarity=0.353 Sum_probs=26.2
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHH
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLL 388 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL 388 (699)
..-++||+++| +|||.+ +.- -..+++.=....+.+...+..++...+
T Consensus 290 ~~~~~Ea~a~g-~pvi~~-~~~--~~~e~~~~~~~g~~~~~~~~~~~~~~i 336 (381)
T COG0438 290 GLVLLEAMAAG-TPVIAS-DVG--GIPEVVEDGETGLLVPPGDVEELADAL 336 (381)
T ss_pred hHHHHHHHhcC-CcEEEC-CCC--ChHHHhcCCCceEecCCCCHHHHHHHH
Confidence 34489999999 999888 543 223333332122244443555555443
No 206
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=33.14 E-value=5.6e+02 Score=28.99 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=50.6
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCccc-ccCCcceEEeccCCCH--HHHHHHHhc-CCHHHHHHHHHhhHHHHHhhhhc
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEE-VLDWNKILIPLPVARI--PELHLLLRS-ISDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~d-vIDW~~fsV~ipe~~l--~~L~~iL~s-is~e~i~~Mrrq~r~v~~~yfss 413 (699)
.--+.|||.+| ||+|+-++....|... .+.+....+.++-+.+ ..|.+-++. +.++.+.+-.++.+.......+
T Consensus 310 ~gtt~eaL~~g-vP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~~~g- 387 (406)
T COG1819 310 AGTTSEALYAG-VPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKEEDG- 387 (406)
T ss_pred cchHHHHHHcC-CCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccc-
Confidence 34578999988 7877776887777654 4677778888875444 455554443 3444444444444444444444
Q ss_pred hHHHHHHHHHHHHh
Q psy11113 414 LQSQMDTLVAVVRD 427 (699)
Q Consensus 414 ~~~iv~TtL~iL~~ 427 (699)
.+++.+.+.+-.++
T Consensus 388 ~~~~a~~le~~~~~ 401 (406)
T COG1819 388 PAKAADLLEEFARE 401 (406)
T ss_pred HHHHHHHHHHHHhc
Confidence 33344444443444
No 207
>PRK14148 heat shock protein GrpE; Provisional
Probab=32.83 E-value=1.2e+02 Score=31.42 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=26.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
..++..++.++++++.++...+.++.|+.++.+..+.
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rK 75 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRK 75 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777777776654
No 208
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.79 E-value=98 Score=33.68 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=29.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISIN--------------QAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~--------------~a~~~~~e~~~ 45 (699)
|-+++.|.-|-+..+.....|.+.||.++. .||+|++||+.
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARk 124 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777764 47788888853
No 209
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=32.51 E-value=75 Score=27.43 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+-.+.+++.+.+.++++++.+.++.+.++..+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544433
No 210
>PRK14160 heat shock protein GrpE; Provisional
Probab=31.64 E-value=1.1e+02 Score=31.85 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=28.8
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
+|.++..+.++++++++++..++.++.|++++.+..+.
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RK 96 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRK 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888888888888888888887776654
No 211
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=31.17 E-value=1e+02 Score=33.94 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=13.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
|.....+++..++++...+.+|..++..|+..
T Consensus 213 l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 213 LKKLLQEIMIKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444433
No 212
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.16 E-value=71 Score=28.40 Aligned_cols=40 Identities=15% Similarity=0.311 Sum_probs=27.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
+..+..+++.++.+|.....++..++..++.++..+++.+
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~ 103 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELF 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777777777666653
No 213
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.10 E-value=1.3e+02 Score=28.56 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=31.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+.++..+...+..+++++...+.++..|+..|...+.++..+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l 46 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETL 46 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888888888888877777766443
No 214
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.92 E-value=1e+02 Score=32.42 Aligned_cols=45 Identities=4% Similarity=0.042 Sum_probs=25.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+.|+..++.+++.++....+.+..++.++.+|++.+..+.++-..
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555556666666666665555555433
No 215
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.86 E-value=1.2e+02 Score=29.58 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=25.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
|..|.-|....++||.++..+..|...|+..++.+...-+
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777777777777777776666655433
No 216
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=30.64 E-value=1e+02 Score=26.16 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQLA 39 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~ 39 (699)
..++++|--++.||.+.+.||.+-+.+-..|+..
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~~srsAAeaL 61 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKKASRSAAEAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 3445566666666666666666666665566553
No 217
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=30.61 E-value=1.6e+02 Score=26.64 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=29.9
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQ-------DKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~-------~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
||.|+..+.+..+++...+..++ .++.||..++++|.-.+.++++.
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~ 53 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRS 53 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677776666666665555544 55667777777777777766553
No 218
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.47 E-value=1.2e+02 Score=28.24 Aligned_cols=44 Identities=9% Similarity=0.226 Sum_probs=34.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
...|..+..++++||+++...-.|=.+|+++-+..+..+.|.-.
T Consensus 14 e~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 14 EQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567778888888888888888888888888888887777744
No 219
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.27 E-value=1.4e+02 Score=26.15 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=16.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISIN 34 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~ 34 (699)
-|+.+++.|||+|..-...++|...+....+
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 3566666666666555555554444433333
No 220
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=30.25 E-value=75 Score=39.05 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.2
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQ----------DKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~----------~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
|+.|+..++.++-.+++++.+.+ .+|+++|..++.|...++||-....
T Consensus 75 l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~ 132 (766)
T PF10191_consen 75 LRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWST 132 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45666667777777766666554 6899999999999999999955443
No 221
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.19 E-value=1.3e+02 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
++.|+|++...+.+|.+|+....+-+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655444
No 222
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.13 E-value=1e+02 Score=35.90 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=31.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLD-------KLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~-------~l~~~i~~a~~~~~e~~~~ 46 (699)
|..++..+.+.+|++++|...+.|++ .++..|+..+.+++++.++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45667777888999999998887766 4555555666666666444
No 223
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.04 E-value=1e+02 Score=28.50 Aligned_cols=40 Identities=10% Similarity=0.291 Sum_probs=27.4
Q ss_pred hhhhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHY--QDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~--~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.++....++..+++++.+. ++++.+|+.+|+..+-..++.
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 3444477777777777777 677777777777777655554
No 224
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.99 E-value=1.3e+02 Score=29.40 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=20.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..+.....+..++|...+.++..|+.+|++++..+.++
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555555544
No 225
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.87 E-value=1.2e+02 Score=30.99 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=17.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..|...++++...+.+....|.+++..|++++....+++.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444433
No 226
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=29.58 E-value=1.4e+02 Score=28.46 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=27.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
-+..+..+++.+...+...+.+|..++..+++.+..+.|+..
T Consensus 95 A~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 95 AIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777777777777777777766666666543
No 227
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=29.53 E-value=1.3e+02 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+...+++++.+++.|-++|+.++++|+.+.+.+
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~ 56 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNA 56 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666665555544
No 228
>PRK10063 putative glycosyl transferase; Provisional
Probab=29.48 E-value=80 Score=32.86 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=50.8
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcC---CCCc-cEEEEEecCCCCCCCC---CCCCCCCcCEEEEeCCCCCccc-cCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNN---LPYL-NKVVVVWNSVQPPRED---LRWPDIGVPVVVVRTNTNDLNN-RFKPYD 623 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~---~p~l-~kIvVvWn~~~~pp~~---~~wp~~~vpV~vi~~~~nSLnn-RF~P~~ 623 (699)
.+++||-||+..+.|.+.|+.+.+ ..+. -+|||| ++....... ..+.. ..+++++..+.+.+.. +=.=..
T Consensus 2 ~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVv-DdgStD~t~~i~~~~~~-~~~i~~i~~~~~G~~~A~N~Gi~ 79 (248)
T PRK10063 2 LLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVV-DGGSNDGTREFLENLNG-IFNLRFVSEPDNGIYDAMNKGIA 79 (248)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEE-ECcCcccHHHHHHHhcc-cCCEEEEECCCCCHHHHHHHHHH
Confidence 378999999999999999988853 2222 366666 433322110 01211 1257777655432110 000112
Q ss_pred CCCccEEEEec-CCcccCHHHHHH
Q psy11113 624 VIETEAVLNMD-DDVYLRHDEIMF 646 (699)
Q Consensus 624 ~I~TeAVLslD-DDi~l~~del~F 646 (699)
.-..|-|+.|| ||+..+ +-+++
T Consensus 80 ~a~g~~v~~ld~DD~~~~-~~~~~ 102 (248)
T PRK10063 80 MAQGRFALFLNSGDIFHQ-DAANF 102 (248)
T ss_pred HcCCCEEEEEeCCcccCc-CHHHH
Confidence 34689999999 666544 43443
No 229
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.46 E-value=1.4e+02 Score=28.70 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=32.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSP 49 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~ 49 (699)
...+.++++.+++.+.+.+.++..|+.-+++.+.++++.|..+-+
T Consensus 76 ~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~~~~~~~~ 120 (134)
T cd04779 76 QREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRMKMTKELS 120 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344566677777777777777777777777777778888776653
No 230
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=29.37 E-value=1.4e+02 Score=30.54 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=29.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
++..+..+++.+++++......+++|+..|.+++..+.|+..+..
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777777777777777777777655443
No 231
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.30 E-value=1.5e+02 Score=27.04 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..+..+++.++..+.....+++.++..++..+..++|+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888888877776
No 232
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=29.26 E-value=66 Score=29.02 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=25.8
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLR 389 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~ 389 (699)
.+..++|++.+||-.|. + +. ++.+.+.-....+.+ ..+..++.+.|+
T Consensus 84 ~~~k~~e~~~~G~pvi~-~-~~---~~~~~~~~~~~~~~~-~~~~~~l~~~i~ 130 (135)
T PF13692_consen 84 FPNKLLEAMAAGKPVIA-S-DN---GAEGIVEEDGCGVLV-ANDPEELAEAIE 130 (135)
T ss_dssp C-HHHHHHHCTT--EEE-E-HH---HCHCHS---SEEEE--TT-HHHHHHHHH
T ss_pred CcHHHHHHHHhCCCEEE-C-Cc---chhhheeecCCeEEE-CCCHHHHHHHHH
Confidence 35789999999985554 4 33 455555445666666 667766665554
No 233
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.13 E-value=1.3e+02 Score=31.29 Aligned_cols=34 Identities=3% Similarity=0.229 Sum_probs=21.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
+|..+..+++++++++..++.++.|++++.++.+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666654
No 234
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.94 E-value=97 Score=25.00 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=22.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKI 31 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~ 31 (699)
|+.++++++.++.++.+.|.-+.+.|-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999988887663
No 235
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.94 E-value=1.2e+02 Score=33.40 Aligned_cols=41 Identities=10% Similarity=0.194 Sum_probs=21.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.|+..+.+..+++.+++...+.+.+.|..+|++.+.+.+++
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554444443
No 236
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=28.66 E-value=1.2e+02 Score=27.36 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.|++++++..++.+|++.+-.+.+++...+.+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 237
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.51 E-value=27 Score=40.54 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=6.4
Q ss_pred CCCCceEEEe
Q psy11113 197 PARRKYLLSY 206 (699)
Q Consensus 197 p~~Rk~Ll~f 206 (699)
..+|-|+++.
T Consensus 169 rV~rAYf~y~ 178 (489)
T PF11853_consen 169 RVDRAYFLYK 178 (489)
T ss_pred EEEEEEEEee
Confidence 4467777666
No 238
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=28.41 E-value=1.8e+02 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=35.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
.|.=.++++.++++||+.++=.+-|.....|+.+-.+..|+++
T Consensus 22 LE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~ 64 (70)
T PF08606_consen 22 LENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEARE 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Confidence 4566788999999999999999999999999888777666654
No 239
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=28.01 E-value=1.3e+02 Score=26.17 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=18.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
|..+++++.+...++.....+++.+...++..+.
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555444
No 240
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=27.98 E-value=1.1e+02 Score=28.38 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy11113 15 IKQDILHYQDKLDKLKISI 33 (699)
Q Consensus 15 ~~~~i~~~~~~l~~l~~~i 33 (699)
+++++.+.+.+|++|+..|
T Consensus 81 l~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 81 LKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333333555555555554
No 241
>smart00338 BRLZ basic region leucin zipper.
Probab=27.91 E-value=76 Score=26.35 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+++|+.++.....+-..|+..+++.+.++..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555444444
No 242
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.69 E-value=1.6e+02 Score=26.69 Aligned_cols=38 Identities=3% Similarity=0.130 Sum_probs=28.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
.+..++++++.|+.|..+.+.|-...+.++..++..++
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqk 61 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQK 61 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777788888888888888888888777654
No 243
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.58 E-value=1.1e+02 Score=33.68 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=31.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|+.+..++++++.+++..+.|++.++.++++.+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 1 ISELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999998888888877666554
No 244
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=27.47 E-value=2.7e+02 Score=32.07 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=44.9
Q ss_pred chhhHHHHHhcCceE----EEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc---CCHHHHHHHHHhhHHHHHh
Q psy11113 337 IQMRLYEALKYGAVP----VIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS---ISDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIP----VIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s---is~e~i~~Mrrq~r~v~~~ 409 (699)
+..-..|||++|+ | ||+| +..=.+ +.|. -++.|+..+..++.+.|.. .+.++..++.++++..-.+
T Consensus 368 ~~Lv~lEamA~g~-P~~g~vVlS-~~~G~~--~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~ 440 (456)
T TIGR02400 368 MNLVAKEYVAAQD-PKDGVLILS-EFAGAA--QELN---GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRK 440 (456)
T ss_pred cCccHHHHHHhcC-CCCceEEEe-CCCCCh--HHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 3456799999996 7 8998 633222 2333 4778888888877765432 3444444433333322122
Q ss_pred hhhchHHHHHHHHHHH
Q psy11113 410 YLATLQSQMDTLVAVV 425 (699)
Q Consensus 410 yfss~~~iv~TtL~iL 425 (699)
-++...++..|..|
T Consensus 441 --~~~~~W~~~~l~~l 454 (456)
T TIGR02400 441 --NDVQRWREDFLSDL 454 (456)
T ss_pred --CCHHHHHHHHHHHh
Confidence 24555555555544
No 245
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=27.35 E-value=1.9e+02 Score=31.11 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhh-hhchHHHHHHHHHHHHhh
Q psy11113 378 VARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRY-LATLQSQMDTLVAVVRDR 428 (699)
Q Consensus 378 e~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~y-fss~~~iv~TtL~iL~~R 428 (699)
+.+..+|.+.+..+ .++...+|.++.+.+.+.. -...+.+++.+++.+..|
T Consensus 325 ~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~~~ 378 (380)
T PRK00025 325 EATPEKLARALLPLLADGARRQALLEGFTELHQQLRCGADERAAQAVLELLKQR 378 (380)
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhhc
Confidence 33444554443332 3566678888876555542 223455666666655554
No 246
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=27.34 E-value=1.4e+02 Score=31.93 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
.++++++.++.+.+.+++.++..+++|+..+.
T Consensus 94 ~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~ 125 (334)
T TIGR00998 94 RQTKQLEITVQQLQAKVESLKIKLEQAREKLL 125 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555555555555433
No 247
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.29 E-value=90 Score=34.45 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 7 SYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.++.+.++.+..+..++.+|..++..|++.+..+.+
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444443333
No 248
>PHA01750 hypothetical protein
Probab=27.21 E-value=2e+02 Score=25.03 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11113 23 QDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 23 ~~~l~~l~~~i~~a~~~~~e 42 (699)
+.||+.|+.+|+....-|-+
T Consensus 41 ~~ELdNL~~ei~~~kikqDn 60 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHH
Confidence 35666666666666555444
No 249
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=27.03 E-value=2.1e+02 Score=23.63 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+++|+..+...+.+.+.|+..+++.+.....+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 250
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=26.83 E-value=1.5e+02 Score=27.46 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=25.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.|..++.+.++..+.|.+.+...++|+.++++.+.+..|.
T Consensus 26 ~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~ 65 (110)
T PF10828_consen 26 RIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQ 65 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777666666666666554444433
No 251
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.67 E-value=1.9e+02 Score=26.65 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=34.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
-++..+-.++..+++++.....++..|+.++..++..++|+
T Consensus 3 ~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL 43 (110)
T TIGR02338 3 PQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEEL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777788888888888888889999999999888888
No 252
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.61 E-value=1e+02 Score=27.78 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
..++.++++++..++.++.+++.+++.++.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEA 98 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555555544
No 253
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=26.47 E-value=1.7e+02 Score=30.95 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=39.7
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
|..++..+..++..+..+...+..|..+|+..+..|+.+++++...-
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999888876553
No 254
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=26.39 E-value=1.5e+02 Score=28.73 Aligned_cols=38 Identities=13% Similarity=0.373 Sum_probs=31.6
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
++.+|..+.+++++++..+.+++.+++.++..+++-..
T Consensus 16 ~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~ 53 (165)
T PF01025_consen 16 LEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKE 53 (165)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999988877765444
No 255
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=26.28 E-value=1.1e+02 Score=28.73 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
...++++..+..++.+.++++..+.+...+++.+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555554444444444433
No 256
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=26.24 E-value=1.6e+02 Score=27.41 Aligned_cols=37 Identities=14% Similarity=0.250 Sum_probs=27.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
..+...++.+++++...+..+..|+..|+..+.++..
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~ 38 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIET 38 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888887777777776533
No 257
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=26.17 E-value=88 Score=33.88 Aligned_cols=111 Identities=10% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCeEEEEEeccCcHHHHHHHHHhcCC---CCccEEEEEecCCCCCCCCCCCCCCCcCE----EEE-eCCCC-----Cccc
Q psy11113 551 EQFTIIILTYERDQVLINSLSRLNNL---PYLNKVVVVWNSVQPPREDLRWPDIGVPV----VVV-RTNTN-----DLNN 617 (699)
Q Consensus 551 ~~FT~vI~ty~R~~~L~~~l~~l~~~---p~l~kIvVvWn~~~~pp~~~~wp~~~vpV----~vi-~~~~n-----SLnn 617 (699)
-..++||-+|+..+.|.+.|+.+.+. +...+||||=++...-.... --..++.+ .++ ....| .+|.
T Consensus 31 ~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~i-a~~~~~~v~~~~~~~~~~~~n~Gkg~A~~~ 109 (306)
T PRK13915 31 RTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAER-AAAAGARVVSREEILPELPPRPGKGEALWR 109 (306)
T ss_pred CCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHH-HHHhcchhhcchhhhhccccCCCHHHHHHH
Confidence 46999999999988898888888642 34568888755432210000 00011110 000 00111 1111
Q ss_pred cCCCCCCCCccEEEEecCCcc-cCHHHHHHHHHHHHhcCC--CccccCCcc
Q psy11113 618 RFKPYDVIETEAVLNMDDDVY-LRHDEIMFAFRVWREQRD--RIVGFPGRY 665 (699)
Q Consensus 618 RF~P~~~I~TeAVLslDDDi~-l~~del~FaF~vWr~~Pd--RiVGF~~R~ 665 (699)
= ...-..|.|+.+|.|.. ++.+.|.-........|+ =+.|++.|.
T Consensus 110 g---~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~ 157 (306)
T PRK13915 110 S---LAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRP 157 (306)
T ss_pred H---HHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccc
Confidence 1 12346799999999995 899999888777665553 344666663
No 258
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=26.15 E-value=1.9e+02 Score=24.29 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=17.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKL 26 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l 26 (699)
..||..++++++.++++|...+.+|
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777777766443
No 259
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=26.09 E-value=1.5e+02 Score=28.11 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=7.2
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQ 23 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~ 23 (699)
|...+.++.+-++++.+++
T Consensus 72 i~~~~~kV~ere~eL~eA~ 90 (115)
T PF06476_consen 72 IAEKQQKVAEREAELKEAQ 90 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 260
>PRK14127 cell division protein GpsB; Provisional
Probab=25.99 E-value=1.3e+02 Score=28.30 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
..+|.+.+++...+.++.+|+..|++.+....
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555555555555555433
No 261
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=25.89 E-value=1.4e+02 Score=32.88 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=18.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
+.+.++++++++++...+.+++.++.+++.++..+..
T Consensus 140 ~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~ 176 (423)
T TIGR01843 140 STLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEV 176 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555444433
No 262
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=25.86 E-value=1.3e+02 Score=34.41 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=45.0
Q ss_pred chhhHHHHHhcCce---EEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc---CCHHHHHHHHHhhHHHHHhh
Q psy11113 337 IQMRLYEALKYGAV---PVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS---ISDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 337 ~s~Rl~eAL~~GCI---PVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s---is~e~i~~Mrrq~r~v~~~y 410 (699)
+..-.+|||++||= |||++ +..-.+ +. ..-.+.++..+..++.+.|.. .++++..+|.++++..-++
T Consensus 373 ~~lv~lEAma~g~p~~g~vV~S-~~~G~~--~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~- 445 (460)
T cd03788 373 MNLVAKEYVACQDDDPGVLILS-EFAGAA--EE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRT- 445 (460)
T ss_pred cCcccceeEEEecCCCceEEEe-ccccch--hh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-
Confidence 34557899999996 69998 633222 11 234678888888877664432 3555555555555533233
Q ss_pred hhchHHHHHHHH
Q psy11113 411 LATLQSQMDTLV 422 (699)
Q Consensus 411 fss~~~iv~TtL 422 (699)
| +.+..+...|
T Consensus 446 ~-~~~~w~~~~l 456 (460)
T cd03788 446 H-DVQAWANSFL 456 (460)
T ss_pred C-CHHHHHHHHH
Confidence 2 3344444444
No 263
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=1.9e+02 Score=28.55 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=30.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
-|..|.+++++++..+...+.+|++|-..+++-+...+++
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999998888888877776655444433
No 264
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=25.75 E-value=2.6e+02 Score=31.82 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=37.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSP 49 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~ 49 (699)
|-..++++-|.+.+++..++.||++++.+++---.++.--+...+-
T Consensus 350 EKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCikaKsq 395 (442)
T PF06637_consen 350 EKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQ 395 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccC
Confidence 4567888899999999999999999999988877777777776653
No 265
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=25.59 E-value=2.1e+02 Score=26.73 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=30.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..++.=+..+.+.|.+.+.+|..++..+++++....|+..
T Consensus 63 l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~ 103 (141)
T TIGR02473 63 LSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARR 103 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777888888888888888888887777754
No 266
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=25.57 E-value=1.2e+02 Score=32.98 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=26.8
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS 390 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s 390 (699)
...++|+|++|+ |||.+ + +.++..-..-.+.+ ..+..++.+.+..
T Consensus 292 P~Kl~EylA~G~-PVVat-~-----~~~~~~~~~~~~~~-~~d~~~~~~ai~~ 336 (373)
T cd04950 292 PLKLFEYLAAGK-PVVAT-P-----LPEVRRYEDEVVLI-ADDPEEFVAAIEK 336 (373)
T ss_pred cchHHHHhccCC-CEEec-C-----cHHHHhhcCcEEEe-CCCHHHHHHHHHH
Confidence 457999999996 77765 4 33554444433333 3466665555444
No 267
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.54 E-value=94 Score=28.08 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=30.3
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQ---------DKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~---------~~l~~l~~~i~~a~~~~~e 42 (699)
++.||..++.+++.++..+.+.. .+|..|+-.++.|=..+|+
T Consensus 17 ~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~ 67 (100)
T PF01486_consen 17 LQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRS 67 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHH
Confidence 35678888888888888877776 6777777777666554443
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=25.40 E-value=1.2e+02 Score=36.40 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.6
Q ss_pred hHHHHHhcCceEEEEeCCCc
Q psy11113 340 RLYEALKYGAVPVIVGGDNV 359 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d~~ 359 (699)
--.|.+.-+-|||+.- +++
T Consensus 581 ~A~e~f~~~~iPv~~~-~dV 599 (652)
T COG2433 581 AAAEEFFKNEIPVLPE-GDV 599 (652)
T ss_pred HHHHHHhhcCCceeec-Cce
Confidence 3468889999999987 443
No 269
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.34 E-value=1.2e+02 Score=36.27 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=19.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|.+|..+..+++++..++...+.++.+++.++++.+....|.
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~l 375 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEEL 375 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 270
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.30 E-value=1.5e+02 Score=32.60 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.+|...+++++++++++.....+++..+..+++.+.++.||
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~a 258 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEA 258 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777766666666666666666666
No 271
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=25.18 E-value=1.8e+02 Score=28.34 Aligned_cols=12 Identities=17% Similarity=-0.000 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHh
Q psy11113 34 NQAQLAHTESLR 45 (699)
Q Consensus 34 ~~a~~~~~e~~~ 45 (699)
.+.|..++|+..
T Consensus 78 ~~re~~i~rL~~ 89 (135)
T TIGR03495 78 AQREQRIERLKR 89 (135)
T ss_pred HHHHHHHHHHHH
Confidence 344445555543
No 272
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=25.16 E-value=1.3e+02 Score=35.67 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 3 MEINSYVSKIDQIKQD-------ILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~-------i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
.++..|.++++++++. |.+...|+++|+.++++.+.+++.+.+.
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 273
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=25.15 E-value=2e+02 Score=23.24 Aligned_cols=30 Identities=13% Similarity=0.322 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 13 DQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 13 e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
..+-.++.....-|+++...++.|...++.
T Consensus 21 ~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 50 (63)
T PF05739_consen 21 QDIGEEVEEQNEMLDRIEDNVDRANENLKK 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHhhHHHHHHHHHHHHHHHHH
Confidence 333334444444444555544444444433
No 274
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=25.11 E-value=2.5e+02 Score=30.83 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=45.7
Q ss_pred hHHHHHhcCceEEEEeCCCccCCccc------ccCCcceEEeccCCCHHHHHHHHhcC---CHHHHHHHHHhhHHHHHhh
Q psy11113 340 RLYEALKYGAVPVIVGGDNVMLPFEE------VLDWNKILIPLPVARIPELHLLLRSI---SDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d~~~LPF~d------vIDW~~fsV~ipe~~l~~L~~iL~si---s~e~i~~Mrrq~r~v~~~y 410 (699)
-+.|||.+|+ |||+. +. .|-.+ +++ ..+.+.+ .+..+|.+.+..+ .++...+|+++++..-..
T Consensus 294 ti~EAma~g~-PvI~~-~~--~pgqe~gn~~~i~~-~g~g~~~--~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~- 365 (382)
T PLN02605 294 TIAEALIRGL-PIILN-GY--IPGQEEGNVPYVVD-NGFGAFS--ESPKEIARIVAEWFGDKSDELEAMSENALKLARP- 365 (382)
T ss_pred hHHHHHHcCC-CEEEe-cC--CCccchhhHHHHHh-CCceeec--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-
Confidence 4789999996 77777 52 34333 233 3444443 4555555544332 266778888887754322
Q ss_pred hhchHHHHHHHHHHHHhh
Q psy11113 411 LATLQSQMDTLVAVVRDR 428 (699)
Q Consensus 411 fss~~~iv~TtL~iL~~R 428 (699)
.+.+.+++.+++.+++|
T Consensus 366 -~a~~~i~~~l~~~~~~~ 382 (382)
T PLN02605 366 -EAVFDIVHDLHELVRQR 382 (382)
T ss_pred -chHHHHHHHHHHHhhCC
Confidence 22356666666665543
No 275
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=24.92 E-value=74 Score=34.76 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=42.6
Q ss_pred CCCCCCCcCEEEEeCCCCCccccCCCCCC-CCccEEEEecCCcccCHHHHHHHHHHHHhc
Q psy11113 596 LRWPDIGVPVVVVRTNTNDLNNRFKPYDV-IETEAVLNMDDDVYLRHDEIMFAFRVWREQ 654 (699)
Q Consensus 596 ~~wp~~~vpV~vi~~~~nSLnnRF~P~~~-I~TeAVLslDDDi~l~~del~FaF~vWr~~ 654 (699)
..|.+-.+-|....+.+=-.--||+..+- -+-|.|+..|||+.+.+-+++.-|++-+++
T Consensus 85 ~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~ 144 (294)
T PF05212_consen 85 FEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKE 144 (294)
T ss_pred cccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHh
Confidence 45665555555544444445678885544 367899999999999999999999888764
No 276
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.82 E-value=1.9e+02 Score=23.03 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=19.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
+-..+...+|.++.+-...+.|.++|+++|....
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666666655443
No 277
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.72 E-value=1.5e+02 Score=30.14 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=7.9
Q ss_pred hhhhhhhhhHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILH 21 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~ 21 (699)
.+|..++.++++++..|..
T Consensus 76 ~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEE 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 278
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=24.46 E-value=1.3e+02 Score=27.48 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHhcCCC-CCCCccCceEEEEeec
Q psy11113 114 TIYQALKFNPH-FTSNPKEACVFVVLIG 140 (699)
Q Consensus 114 ~i~~~l~~s~~-~T~dP~eAclF~v~i~ 140 (699)
.|...|....| .|.+|++||+.++-.=
T Consensus 18 ~i~~~l~~~G~~~~~~~e~AD~iiiNTC 45 (98)
T PF00919_consen 18 RIASILQAAGYEIVDDPEEADVIIINTC 45 (98)
T ss_pred HHHHHHHhcCCeeecccccCCEEEEEcC
Confidence 56667777766 6899999999988543
No 279
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.43 E-value=1.9e+02 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=22.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
+..+..+++.++.++...+.++++++..+++.+..+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666555544
No 280
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=24.26 E-value=1.5e+02 Score=35.41 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=30.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..++.++++++++++++.+.+.++.++....+....+..|.+.
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 257 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLE 257 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777766666554444444
No 281
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=24.08 E-value=1.1e+02 Score=34.38 Aligned_cols=45 Identities=9% Similarity=0.174 Sum_probs=39.2
Q ss_pred CCCCCCCeEEEEEeccCcHHHHHHHHHhcCCCCccEEEEEecCCC
Q psy11113 546 SNKQREQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQ 590 (699)
Q Consensus 546 ~~~p~~~FT~vI~ty~R~~~L~~~l~~l~~~p~l~kIvVvWn~~~ 590 (699)
|..+.+...+||++++|.+-|..+|..|++...+.+.++|-+.+-
T Consensus 26 ~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~ 70 (356)
T PF05060_consen 26 GPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDF 70 (356)
T ss_pred CCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccC
Confidence 344567899999999999999999999999999999999877653
No 282
>smart00338 BRLZ basic region leucin zipper.
Probab=23.98 E-value=1.8e+02 Score=24.07 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=20.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
.+..+..+++.++.+....+.+++.|+.++.....
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666555443
No 283
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=23.86 E-value=1.3e+02 Score=25.31 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
+.++++.+++.+.+.+.++.+.|.++.++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666655555544
No 284
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.80 E-value=1.8e+02 Score=30.50 Aligned_cols=31 Identities=16% Similarity=0.456 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
+++++..+...+.++++++.+|++.+..+.|
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 285
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.78 E-value=1.9e+02 Score=29.44 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=40.6
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQLYPP 54 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~~~~~P 54 (699)
.+.+|..+.+++++++..+.++++|.+.++...++-+...++.-..+--+-.+|
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLp 77 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLN 77 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999999999999988887776666555544443333344
No 286
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.69 E-value=1.4e+02 Score=35.69 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=20.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.++..++.++.+++.++...+.++++++..|++.+..+++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554433
No 287
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.65 E-value=2.4e+02 Score=23.37 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=25.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLA 39 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~ 39 (699)
.|..+..+++.++.+...+..+++.|+..+++.+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466677777777777777777777777777766543
No 288
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.48 E-value=1.6e+02 Score=35.37 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=38.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
+.|+..++.+++++..++.....+++.++.++.|+.....|....+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~ 373 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENE 373 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899999999999999999999988887777755443
No 289
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.47 E-value=1.7e+02 Score=31.14 Aligned_cols=41 Identities=17% Similarity=0.470 Sum_probs=19.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
||..+...+++++.++...+.++.+++..+..++....+.+
T Consensus 111 el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444445555555444444444443
No 290
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=23.27 E-value=1.5e+02 Score=28.86 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=17.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
.++..+...+++-+.++.-++.+|..+..+|.-+|.++.-+++
T Consensus 77 lkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e 119 (136)
T PF11570_consen 77 LKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAME 119 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3344444444444444555555555554444444455544433
No 291
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=23.25 E-value=2.3e+02 Score=26.96 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=35.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
++..|+.-++.|.+.|.+.+..|..++..+++++....|+...
T Consensus 65 ~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~ 107 (147)
T PRK05689 65 WWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQR 107 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788889999999999999999999999888887543
No 292
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=23.23 E-value=2.1e+02 Score=27.23 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=20.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++...+..++++.+++..-.+++.+|++++..+.++
T Consensus 62 ~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~l 100 (139)
T PF05615_consen 62 ILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEEL 100 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666655555555555555444443
No 293
>PF04394 DUF536: Protein of unknown function, DUF536; InterPro: IPR007489 This is a C-terminal region from several bacterial proteins of unknown function that may be involved in a theta-type replication mechanism.
Probab=23.12 E-value=1.6e+02 Score=23.53 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
..+|+.+..-.|+-++.......+++.|+.+|+.+++
T Consensus 9 d~qI~~l~kLLDQQQ~L~L~~~k~le~L~~el~E~k~ 45 (45)
T PF04394_consen 9 DKQIEELQKLLDQQQQLALQDNKKLEELKAELEEYKA 45 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 294
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=22.97 E-value=1.6e+02 Score=32.04 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 21 HYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 21 ~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
..+.+++.++.+|++|+..+..+
T Consensus 111 ~~~~~~~~~~~~i~~a~~~l~~a 133 (346)
T PRK10476 111 AERSNAASANEQVERARANAKLA 133 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555544444
No 295
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.94 E-value=1.8e+02 Score=31.08 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=31.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
+.||..++..++.+..+..+.+.+++.++..++..+..+.+..
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~ 95 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEEL 95 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777777776666653
No 296
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.76 E-value=1.3e+02 Score=31.55 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=26.4
Q ss_pred hhhhhhhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 3 MEINSYVSKIDQIKQ---------DILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~---------~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
..|..+++..+.+.. ++.+.+.+|.+++.+|++++.+++.+-+
T Consensus 139 arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 139 ARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443 3445557788888888888887776644
No 297
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.65 E-value=2.1e+02 Score=30.44 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=19.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..+...++.+...+...+.+++.++.++.+-+..++++.+
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444443
No 298
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.64 E-value=2.2e+02 Score=27.87 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQL 51 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~~~ 51 (699)
.|..++..++..+..+.+....|..||..+..++...+|...+-.+-+
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 456788888888888888888899999999999999988877655433
No 299
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.61 E-value=2.2e+02 Score=26.61 Aligned_cols=39 Identities=31% Similarity=0.340 Sum_probs=28.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..+..+++.+++.+...+.++.+++..+++.+..+.+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777777777777777777777777777666553
No 300
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.45 E-value=2.7e+02 Score=23.75 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=21.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+.++.....+++++++.+........+++..|..+...+.+.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554555555555555555555444
No 301
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.38 E-value=2.1e+02 Score=25.61 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=17.5
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
||+||..+..+-..+.+++..+...-+.|..+.+|.
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355555555555555555555443333333333333
No 302
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.37 E-value=3e+02 Score=24.60 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
.++|.+++...|..|+.|-..|+..+....-+...|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN 53 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN 53 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777776666665554333
No 303
>PRK14139 heat shock protein GrpE; Provisional
Probab=22.30 E-value=2.3e+02 Score=29.07 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=20.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
++..+..+++++++++...++++.|+..+.+..+.
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRR 67 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666555443
No 304
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=22.09 E-value=2.6e+02 Score=26.77 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=33.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
++..++.=++.|.+.|.+.+..+..++..+++++....|+...
T Consensus 65 ~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~ 107 (146)
T PRK07720 65 EIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888888888888888877543
No 305
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=22.03 E-value=3.2e+02 Score=33.94 Aligned_cols=84 Identities=11% Similarity=0.080 Sum_probs=53.1
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC------CHHHHHHHHHhhHH-HHH
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI------SDEDIVAFRHQGRQ-VFT 408 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si------s~e~i~~Mrrq~r~-v~~ 408 (699)
++..-++|||++||-. |.+ +.=-+ .|+|.=..-.+.|+..+..++.+.|..+ .++...+|.++++. +.+
T Consensus 655 pFGLvvLEAMAcGlPV-VAT-~~GG~--~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~ 730 (784)
T TIGR02470 655 AFGLTVLEAMTCGLPT-FAT-RFGGP--LEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYE 730 (784)
T ss_pred CCCHHHHHHHHcCCCE-EEc-CCCCH--HHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3567799999999854 555 43222 3566556677888888887766654432 56677888888764 334
Q ss_pred hhhhchHHHHHHHHHHH
Q psy11113 409 RYLATLQSQMDTLVAVV 425 (699)
Q Consensus 409 ~yfss~~~iv~TtL~iL 425 (699)
+| + -+..+..+++.+
T Consensus 731 ~F-S-W~~~A~~ll~l~ 745 (784)
T TIGR02470 731 KY-T-WKIYSERLLTLA 745 (784)
T ss_pred hC-C-HHHHHHHHHHHH
Confidence 43 2 344555555554
No 306
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.86 E-value=2e+02 Score=29.99 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=24.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+.+|..+.+++++++..+.+++++.+.++...++-....++-
T Consensus 37 ~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 37 PDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666665555444444333
No 307
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.76 E-value=3.1e+02 Score=23.29 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11113 24 DKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 24 ~~l~~l~~~i~~a~~~~~e~ 43 (699)
.||.++|..-.+++..++|+
T Consensus 18 eEL~kvk~~n~~~e~kLqea 37 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEA 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 308
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=21.75 E-value=2.6e+02 Score=29.39 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=61.0
Q ss_pred EEEEEeccCcH-HHHHHHHHhcC----CC--CccEEEEEecCCCCCCCC-----------CCCCCCCcCEEEEeCCCCC-
Q psy11113 554 TIIILTYERDQ-VLINSLSRLNN----LP--YLNKVVVVWNSVQPPRED-----------LRWPDIGVPVVVVRTNTND- 614 (699)
Q Consensus 554 T~vI~ty~R~~-~L~~~l~~l~~----~p--~l~kIvVvWn~~~~pp~~-----------~~wp~~~vpV~vi~~~~nS- 614 (699)
+++|-+|.=+. .|...|+..++ .. .--+|+|| ++...|... .+++. ..-|+++....|.
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vl-dD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~g 79 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFIL-SDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENTG 79 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEE-CCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCCC
Confidence 57788886544 47777766553 21 23578777 554443210 12344 5567777666552
Q ss_pred -----ccccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcC
Q psy11113 615 -----LNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQR 655 (699)
Q Consensus 615 -----LnnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~P 655 (699)
||+ |+....-..|-|+.+|-|..+.++-|......-.+.|
T Consensus 80 ~Kag~l~~-~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~ 124 (254)
T cd04191 80 RKAGNIAD-FCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANP 124 (254)
T ss_pred ccHHHHHH-HHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 333 2221123568999999999999999998887665555
No 309
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.74 E-value=2.3e+02 Score=29.88 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=30.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
+++.|....+.+++++..+...+++||.+|.+++.-+.|+..+.
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777777666664443
No 310
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.61 E-value=2.4e+02 Score=25.01 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhc
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQ----LAHTESLRQN 47 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~----~~~~e~~~~~ 47 (699)
++|++++...+...-.+.++|+...++++ .+..|+-+.|
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn 66 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 67778888777777777777777776554 4445554443
No 311
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.51 E-value=3.6e+02 Score=22.58 Aligned_cols=33 Identities=9% Similarity=0.266 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+++++++++++....++.+|.++++.+..+.+.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666555555544443
No 312
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.44 E-value=2.4e+02 Score=30.04 Aligned_cols=36 Identities=6% Similarity=0.232 Sum_probs=24.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
.++..+..+++++++++..++.++.|+..+.+..+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RK 102 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRK 102 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777766554
No 313
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.27 E-value=2.2e+02 Score=25.08 Aligned_cols=42 Identities=10% Similarity=0.197 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNSP 49 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~~ 49 (699)
=..+.+++++.......+...++.++.+++.++.+++...++
T Consensus 43 t~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~ 84 (125)
T PF13801_consen 43 TPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPP 84 (125)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345667777777888888888888999988888888776553
No 314
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.14 E-value=1.7e+02 Score=33.16 Aligned_cols=44 Identities=11% Similarity=0.226 Sum_probs=23.9
Q ss_pred hhhhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDIL---HYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~---~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+.++..+.+++++++..+. +++.++..++.++++.+..+.|+.+
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555421 2334566666666666666666543
No 315
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=21.04 E-value=2.1e+02 Score=30.14 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred hHHHHHhcCceEEEEeCCCc------cCCcccccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHH
Q psy11113 340 RLYEALKYGAVPVIVGGDNV------MLPFEEVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQV 406 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d~~------~LPF~dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v 406 (699)
-++|||.+|+--|++. ... ..+.+.+. .....+.++.. +..+|.+.|+.+ .++...+|+++++..
T Consensus 264 t~~Eam~~G~Pvv~~~-~~~~~~~~~~~~~~~l~-~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (350)
T cd03785 264 TVAELAALGLPAILIP-LPYAADDHQTANARALV-KAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSL 338 (350)
T ss_pred HHHHHHHhCCCEEEee-cCCCCCCcHHHhHHHHH-hCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4789999997544432 211 11122233 34566777655 666665554433 456677888887643
No 316
>PRK14140 heat shock protein GrpE; Provisional
Probab=21.00 E-value=2.5e+02 Score=28.92 Aligned_cols=33 Identities=9% Similarity=0.275 Sum_probs=18.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
|..+.++++++++++..++.++.|++++.+..+
T Consensus 39 ~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 39 LDEEQAKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666656555555544
No 317
>PRK14147 heat shock protein GrpE; Provisional
Probab=20.90 E-value=2.2e+02 Score=28.70 Aligned_cols=29 Identities=3% Similarity=0.206 Sum_probs=14.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
+..+++++++++...++++.|+.++.++.
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~ 51 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQ 51 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555444443
No 318
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=20.87 E-value=1.2e+02 Score=22.99 Aligned_cols=28 Identities=11% Similarity=0.332 Sum_probs=16.8
Q ss_pred ChhhhhhhhhhH---HHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKI---DQIKQDILHYQDKLDK 28 (699)
Q Consensus 1 ~q~~i~~~~~~~---e~~~~~i~~~~~~l~~ 28 (699)
|+.||..++.+. |+...++.++..+|..
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~Kek~L~n 32 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQKEKELSN 32 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 466777666554 5566666666665543
No 319
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=20.75 E-value=3e+02 Score=21.76 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
+++||+||.+=+..+|....+.++..
T Consensus 4 ~~ieelkqll~rle~eirett~sl~n 29 (46)
T PF08181_consen 4 KKIEELKQLLWRLENEIRETTDSLRN 29 (46)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888776666655555555443
No 320
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=20.67 E-value=2.3e+02 Score=28.61 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
..+...+.+..+.+...++|+..|.++...++...+
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~ 168 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLR 168 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444455544444444444333
No 321
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.65 E-value=1.5e+02 Score=26.33 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=11.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
++++..+||.+|++..+||++++.+
T Consensus 5 i~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 5 IQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444
No 322
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=20.25 E-value=1e+02 Score=28.84 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy11113 7 SYVSKIDQIKQDILHYQ---DKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~---~~l~~l~~~i~~a~~~~~e~~ 44 (699)
....++.++++++..++ ..|+.++.++++.+..+.++.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 43 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELL 43 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444 355666666666666665553
No 323
>PRK14155 heat shock protein GrpE; Provisional
Probab=20.11 E-value=2.4e+02 Score=29.35 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=21.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
+.+|..+.+++++++..+.+++++.+.++...++-+...+
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~ 58 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDAR 58 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666665555554444443333
No 324
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.08 E-value=2.7e+02 Score=27.10 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=32.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
.+|..++..+...+..+.+.+.++..=..+|...+..+.|+...|.
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666777777777777778888888888877664
No 325
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=20.05 E-value=3e+02 Score=24.32 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
...++.++++++.....++..|+.++..++.+.+|+.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888888999999999883
Done!