Query psy11113
Match_columns 699
No_of_seqs 310 out of 741
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 18:16:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11113.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11113hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1omz_A Alpha-1,4-N-acetylhexos 100.0 1.3E-46 4.5E-51 393.5 10.4 150 545-696 22-182 (293)
2 3qhp_A Type 1 capsular polysac 96.0 0.021 7.3E-07 52.1 8.8 69 337-409 87-157 (166)
3 3okp_A GDP-mannose-dependent a 95.3 0.073 2.5E-06 54.6 10.4 89 336-430 291-381 (394)
4 2bfw_A GLGA glycogen synthase; 95.2 0.031 1.1E-06 52.5 6.8 68 337-409 128-198 (200)
5 3c48_A Predicted glycosyltrans 94.8 0.088 3E-06 55.4 9.6 87 337-429 338-426 (438)
6 2jjm_A Glycosyl transferase, g 94.5 0.17 5.8E-06 52.6 10.8 88 337-429 297-386 (394)
7 2gek_A Phosphatidylinositol ma 93.8 0.14 4.8E-06 52.9 8.4 88 337-430 296-385 (406)
8 2iw1_A Lipopolysaccharide core 93.5 0.12 4.2E-06 52.7 7.1 70 337-410 283-355 (374)
9 3fro_A GLGA glycogen synthase; 92.5 0.6 2.1E-05 48.4 10.8 86 337-429 343-431 (439)
10 2r60_A Glycosyl transferase, g 92.2 0.25 8.6E-06 53.3 7.7 88 337-429 371-460 (499)
11 3oy2_A Glycosyltransferase B73 92.0 0.21 7.3E-06 52.1 6.7 89 337-430 286-392 (413)
12 2ffu_A Ppgalnact-2, polypeptid 91.8 0.054 1.9E-06 59.5 2.0 108 552-660 67-180 (501)
13 2x6q_A Trehalose-synthase TRET 91.8 0.34 1.2E-05 50.7 8.0 84 337-427 328-413 (416)
14 1f0k_A MURG, UDP-N-acetylgluco 91.7 0.23 7.9E-06 50.7 6.4 83 339-426 265-355 (364)
15 2nzw_A Alpha1,3-fucosyltransfe 91.5 0.42 1.5E-05 51.7 8.4 110 236-399 194-307 (371)
16 3rhz_A GTF3, nucleotide sugar 90.9 0.69 2.4E-05 48.9 9.2 66 338-409 254-319 (339)
17 1xhb_A Polypeptide N-acetylgal 90.8 0.12 4.2E-06 56.0 3.5 109 552-660 30-148 (472)
18 1qg8_A Protein (spore coat pol 89.7 0.12 4.1E-06 50.4 2.1 109 552-661 2-124 (255)
19 3bcv_A Putative glycosyltransf 88.1 0.2 6.9E-06 48.2 2.3 111 552-662 6-120 (240)
20 2d7i_A Polypeptide N-acetylgal 87.9 0.15 5.1E-06 57.4 1.5 109 552-660 113-230 (570)
21 2qzs_A Glycogen synthase; glyc 87.7 2 7E-05 45.8 10.2 85 337-429 379-477 (485)
22 1rzu_A Glycogen synthase 1; gl 86.5 2.3 8E-05 45.4 9.7 86 337-430 378-477 (485)
23 4fix_A UDP-galactofuranosyl tr 84.8 1.1 3.7E-05 51.7 6.5 109 551-660 180-303 (657)
24 2f9f_A First mannosyl transfer 84.3 0.41 1.4E-05 44.5 2.2 48 338-390 111-158 (177)
25 2iuy_A Avigt4, glycosyltransfe 82.7 1.8 6.2E-05 43.8 6.5 81 337-429 254-336 (342)
26 1uqt_A Alpha, alpha-trehalose- 79.5 6.5 0.00022 43.5 9.9 83 337-427 364-453 (482)
27 3s28_A Sucrose synthase 1; gly 78.7 3.9 0.00013 48.5 8.2 85 337-426 677-767 (816)
28 2z86_A Chondroitin synthase; G 78.4 2.2 7.6E-05 47.7 5.9 104 552-656 94-204 (625)
29 3s2u_A UDP-N-acetylglucosamine 72.7 11 0.00039 39.3 9.1 81 339-426 263-356 (365)
30 3beo_A UDP-N-acetylglucosamine 71.4 1.7 6E-05 44.3 2.5 60 341-405 294-355 (375)
31 4dzn_A Coiled-coil peptide CC- 64.0 10 0.00036 26.4 4.3 25 12-36 4-28 (33)
32 3hnw_A Uncharacterized protein 63.0 9 0.00031 35.8 5.2 6 8-13 80-85 (138)
33 1jcd_A Major outer membrane li 62.8 22 0.00074 28.1 6.5 41 4-47 5-45 (52)
34 3m91_A Proteasome-associated A 62.4 9.5 0.00033 30.0 4.4 34 2-35 15-48 (51)
35 4dzn_A Coiled-coil peptide CC- 61.4 14 0.00048 25.8 4.5 30 3-32 2-31 (33)
36 3otg_A CALG1; calicheamicin, T 61.0 5.2 0.00018 41.4 3.6 86 340-428 320-410 (412)
37 3m9b_A Proteasome-associated A 60.8 7.1 0.00024 40.1 4.4 31 13-43 57-87 (251)
38 2xdj_A Uncharacterized protein 60.0 16 0.00054 31.4 5.8 35 12-46 22-56 (83)
39 1vgv_A UDP-N-acetylglucosamine 59.4 1.8 6.2E-05 44.4 -0.2 60 341-405 294-355 (384)
40 4b6x_A AVRRPS4, avirulence pro 58.9 20 0.00069 30.7 6.1 46 1-46 27-77 (90)
41 3hnw_A Uncharacterized protein 57.9 15 0.00052 34.3 5.8 34 8-41 73-106 (138)
42 3qh9_A Liprin-beta-2; coiled-c 57.3 22 0.00075 30.5 6.1 40 3-42 26-65 (81)
43 1v4v_A UDP-N-acetylglucosamine 55.9 16 0.00056 37.2 6.3 79 341-430 286-366 (376)
44 2vsy_A XCC0866; transferase, g 55.9 16 0.00054 39.8 6.5 78 336-428 464-559 (568)
45 2z86_A Chondroitin synthase; G 52.8 6.8 0.00023 43.8 3.1 105 552-656 376-484 (625)
46 3u06_A Protein claret segregat 52.2 16 0.00056 39.8 5.8 43 1-43 8-50 (412)
47 2x0d_A WSAF; GT4 family, trans 51.9 15 0.00052 39.2 5.5 48 338-390 328-375 (413)
48 3l7i_A Teichoic acid biosynthe 51.7 3.1 0.00011 48.0 0.0 109 552-661 3-117 (729)
49 3mq7_A Bone marrow stromal ant 49.5 28 0.00097 31.8 5.9 35 9-43 70-104 (121)
50 1ci6_A Transcription factor AT 49.4 39 0.0013 27.3 6.2 39 4-42 24-62 (63)
51 3q0x_A Centriole protein; cent 48.6 25 0.00087 35.5 6.1 47 2-48 170-216 (228)
52 2jee_A YIIU; FTSZ, septum, coi 48.6 27 0.00091 30.0 5.3 21 4-24 21-41 (81)
53 2xdj_A Uncharacterized protein 48.5 39 0.0013 29.0 6.4 41 5-45 22-62 (83)
54 4emc_A Monopolin complex subun 47.8 29 0.00098 34.2 6.1 37 1-37 25-61 (190)
55 3nb0_A Glycogen [starch] synth 47.3 83 0.0028 36.9 10.9 138 238-422 473-634 (725)
56 1lwu_C Fibrinogen gamma chain; 47.3 25 0.00086 37.3 6.1 45 2-46 11-55 (323)
57 3vue_A GBSS-I, granule-bound s 47.0 17 0.00058 40.5 5.0 85 337-430 414-512 (536)
58 2m1l_A Cyclin-dependent kinase 46.5 36 0.0012 28.3 5.6 44 2-45 14-61 (69)
59 1jcd_A Major outer membrane li 46.0 28 0.00094 27.5 4.6 34 3-36 11-44 (52)
60 3htk_A Structural maintenance 45.9 46 0.0016 26.0 6.1 40 4-43 13-52 (60)
61 1fxk_C Protein (prefoldin); ar 45.9 39 0.0013 30.5 6.5 43 4-46 89-131 (133)
62 2pnv_A Small conductance calci 45.7 25 0.00084 26.8 4.1 31 5-35 11-41 (43)
63 2kw6_A Cyclin-dependent kinase 45.6 30 0.001 28.5 4.9 40 6-45 14-57 (65)
64 3f1y_A Mannosyl-3-phosphoglyce 45.6 8.5 0.00029 41.4 2.2 108 551-664 94-220 (387)
65 3ia7_A CALG4; glycosysltransfe 43.9 33 0.0011 35.0 6.4 86 340-428 309-400 (402)
66 2yy0_A C-MYC-binding protein; 43.6 23 0.0008 27.9 3.9 29 10-38 19-47 (53)
67 2wt7_A Proto-oncogene protein 43.4 27 0.00094 28.1 4.4 26 12-37 25-50 (63)
68 2lw1_A ABC transporter ATP-bin 43.4 56 0.0019 27.9 6.7 44 2-45 21-77 (89)
69 1kd8_B GABH BLL, GCN4 acid bas 43.2 38 0.0013 24.7 4.6 31 5-35 3-33 (36)
70 2iyf_A OLED, oleandomycin glyc 42.8 13 0.00046 38.8 3.2 88 336-426 307-399 (430)
71 2zqm_A Prefoldin beta subunit 42.5 48 0.0017 28.9 6.4 44 1-44 4-47 (117)
72 3oja_B Anopheles plasmodium-re 42.3 30 0.001 38.4 6.1 43 4-46 538-580 (597)
73 1go4_E MAD1 (mitotic arrest de 41.9 31 0.0011 30.7 4.9 31 4-34 13-43 (100)
74 2yy0_A C-MYC-binding protein; 41.3 44 0.0015 26.3 5.2 31 4-34 20-50 (53)
75 1fo8_A Alpha-1,3-mannosyl-glyc 40.0 11 0.00037 40.2 1.9 105 554-662 5-137 (343)
76 1joc_A EEA1, early endosomal a 39.9 51 0.0018 29.9 6.2 46 2-47 3-48 (125)
77 3he5_A Synzip1; heterodimeric 39.6 47 0.0016 25.0 4.7 41 2-42 9-49 (49)
78 2v4h_A NF-kappa-B essential mo 39.4 47 0.0016 30.0 5.6 38 3-40 24-61 (110)
79 4etp_A Kinesin-like protein KA 39.0 27 0.00094 37.9 5.0 40 3-42 10-49 (403)
80 1t2k_D Cyclic-AMP-dependent tr 38.6 32 0.0011 27.4 4.1 27 8-34 27-53 (61)
81 3ol1_A Vimentin; structural ge 38.3 66 0.0023 29.0 6.7 40 3-42 20-59 (119)
82 3ckj_A Putative uncharacterize 37.8 13 0.00043 38.4 2.0 112 551-663 48-171 (329)
83 4etp_A Kinesin-like protein KA 37.3 39 0.0013 36.7 5.8 38 4-41 4-41 (403)
84 1ic2_A Tropomyosin alpha chain 37.0 75 0.0026 26.6 6.4 37 8-44 39-75 (81)
85 3swk_A Vimentin; cytoskeleton, 36.9 59 0.002 27.9 5.8 39 4-42 1-39 (86)
86 2l5g_B Putative uncharacterize 36.6 53 0.0018 24.9 4.6 32 13-44 5-36 (42)
87 3tsa_A SPNG, NDP-rhamnosyltran 36.1 45 0.0015 34.2 5.9 87 339-428 297-390 (391)
88 1l8d_A DNA double-strand break 35.8 68 0.0023 28.0 6.2 43 1-43 1-43 (112)
89 1kd8_A GABH AIV, GCN4 acid bas 35.6 49 0.0017 24.2 4.1 31 5-35 3-33 (36)
90 4dk0_A Putative MACA; alpha-ha 35.4 61 0.0021 33.5 6.8 46 11-56 116-162 (369)
91 3kqg_A Langerin, C-type lectin 34.5 28 0.00095 32.4 3.7 37 6-42 2-41 (182)
92 2zqm_A Prefoldin beta subunit 34.4 73 0.0025 27.8 6.2 42 5-46 72-113 (117)
93 3azd_A Short alpha-tropomyosin 33.9 8.4 0.00029 28.3 -0.0 29 11-39 5-33 (37)
94 3a7p_A Autophagy protein 16; c 33.6 63 0.0021 30.8 5.8 42 2-43 74-122 (152)
95 2wq1_A General control protein 33.6 57 0.0019 23.4 4.1 26 6-31 3-28 (33)
96 3efg_A Protein SLYX homolog; x 33.5 39 0.0013 28.6 4.0 42 2-43 20-61 (78)
97 3mq7_A Bone marrow stromal ant 33.4 78 0.0027 28.9 6.1 29 19-47 73-101 (121)
98 3s4r_A Vimentin; alpha-helix, 33.4 65 0.0022 28.0 5.5 36 8-43 54-89 (93)
99 1use_A VAsp, vasodilator-stimu 33.2 99 0.0034 23.7 5.7 29 10-38 7-36 (45)
100 3na7_A HP0958; flagellar bioge 32.0 64 0.0022 32.5 6.1 7 81-87 221-227 (256)
101 2zdi_C Prefoldin subunit alpha 31.9 72 0.0024 29.6 6.0 43 4-46 99-141 (151)
102 2vch_A Hydroquinone glucosyltr 31.6 55 0.0019 35.7 5.9 93 334-427 363-469 (480)
103 3u1c_A Tropomyosin alpha-1 cha 31.3 88 0.003 27.4 6.1 33 4-36 45-77 (101)
104 2jee_A YIIU; FTSZ, septum, coi 31.0 1.1E+02 0.0039 26.1 6.5 24 1-24 25-48 (81)
105 1fzc_C Fibrin; blood coagulati 30.5 35 0.0012 36.1 4.0 44 2-45 3-46 (319)
106 4hg6_A Cellulose synthase subu 30.5 17 0.00058 42.7 1.7 105 552-656 141-268 (802)
107 2eqb_B RAB guanine nucleotide 30.5 93 0.0032 27.5 6.0 41 3-43 5-45 (97)
108 3u59_A Tropomyosin beta chain; 30.5 98 0.0033 27.0 6.3 22 6-27 47-68 (101)
109 3ra3_B P2F; coiled coil domain 30.4 43 0.0015 22.6 2.9 19 7-25 4-22 (28)
110 2zdi_C Prefoldin subunit alpha 30.4 52 0.0018 30.5 4.8 43 1-43 7-52 (151)
111 2yjn_A ERYCIII, glycosyltransf 30.3 47 0.0016 35.0 5.0 91 334-427 341-436 (441)
112 3c3g_A Alpha/beta peptide with 30.1 71 0.0024 23.0 4.1 28 6-33 3-30 (33)
113 3ol1_A Vimentin; structural ge 29.9 99 0.0034 27.9 6.4 41 6-46 16-56 (119)
114 2r2v_A GCN4 leucine zipper; co 29.5 64 0.0022 23.3 3.9 27 5-31 3-29 (34)
115 1zxa_A CGMP-dependent protein 29.3 63 0.0022 26.8 4.4 31 13-43 14-44 (67)
116 3trt_A Vimentin; cytoskeleton, 29.3 1E+02 0.0035 25.2 5.9 34 7-40 32-65 (77)
117 1fxk_C Protein (prefoldin); ar 29.0 97 0.0033 27.8 6.2 40 4-43 2-41 (133)
118 3na7_A HP0958; flagellar bioge 28.9 77 0.0026 31.9 6.1 39 5-43 41-79 (256)
119 3htk_A Structural maintenance 28.9 1.6E+02 0.0056 22.8 6.8 42 3-44 5-46 (60)
120 1lwu_C Fibrinogen gamma chain; 28.7 83 0.0028 33.3 6.4 42 2-43 4-45 (323)
121 3nmd_A CGMP dependent protein 28.5 80 0.0027 26.5 4.9 17 26-42 42-58 (72)
122 3swy_A Cyclic nucleotide-gated 28.2 1.6E+02 0.0055 22.6 6.2 36 8-43 3-38 (46)
123 1gd2_E Transcription factor PA 28.2 88 0.003 26.0 5.2 39 4-42 30-68 (70)
124 3oja_B Anopheles plasmodium-re 28.1 65 0.0022 35.7 5.8 40 7-46 527-566 (597)
125 1gmj_A ATPase inhibitor; coile 28.0 1.3E+02 0.0046 25.9 6.4 29 16-44 50-78 (84)
126 2z5i_A TM, general control pro 27.9 1.3E+02 0.0044 23.5 5.8 36 9-44 4-39 (52)
127 1uo4_A General control protein 27.9 76 0.0026 23.0 4.0 27 6-32 4-30 (34)
128 2v66_B Nuclear distribution pr 27.9 98 0.0033 28.0 5.8 43 3-45 17-63 (111)
129 4dzo_A Mitotic spindle assembl 27.6 96 0.0033 28.3 5.9 36 10-45 4-39 (123)
130 3c3f_A Alpha/beta peptide with 27.5 83 0.0028 22.7 4.1 29 5-33 3-31 (34)
131 2w6b_A RHO guanine nucleotide 27.3 1.1E+02 0.0036 24.5 5.1 32 12-43 12-43 (56)
132 1ic2_A Tropomyosin alpha chain 26.8 1.3E+02 0.0043 25.2 6.1 34 10-43 34-67 (81)
133 2wt7_A Proto-oncogene protein 26.8 1.5E+02 0.0051 23.7 6.2 33 5-37 25-57 (63)
134 1ci6_A Transcription factor AT 26.5 76 0.0026 25.5 4.4 33 10-42 23-55 (63)
135 2no2_A HIP-I, huntingtin-inter 26.1 1E+02 0.0036 27.4 5.7 32 7-38 51-82 (107)
136 2v71_A Nuclear distribution pr 26.1 94 0.0032 30.6 5.8 41 3-43 70-114 (189)
137 1x8y_A Lamin A/C; structural p 26.1 1.4E+02 0.0049 25.3 6.3 37 9-45 27-63 (86)
138 3i00_A HIP-I, huntingtin-inter 26.0 1.1E+02 0.0036 28.0 5.8 17 2-18 21-37 (120)
139 3ajw_A Flagellar FLIJ protein; 26.0 1.3E+02 0.0045 27.0 6.6 41 5-45 69-109 (150)
140 4e61_A Protein BIM1; EB1-like 25.7 59 0.002 29.2 3.9 22 2-23 10-31 (106)
141 3m48_A General control protein 25.5 83 0.0029 22.6 3.8 27 6-32 3-29 (33)
142 3s4r_A Vimentin; alpha-helix, 25.4 1.5E+02 0.005 25.8 6.4 35 3-37 56-90 (93)
143 2iya_A OLEI, oleandomycin glyc 25.4 64 0.0022 33.6 4.9 90 334-426 327-421 (424)
144 2xci_A KDO-transferase, 3-deox 25.3 10 0.00034 39.9 -1.4 72 339-418 293-371 (374)
145 3a7p_A Autophagy protein 16; c 24.8 1.2E+02 0.0042 28.8 6.1 41 5-45 91-131 (152)
146 2xv5_A Lamin-A/C; structural p 24.8 1.6E+02 0.0054 24.7 6.2 49 3-51 5-63 (74)
147 3ra3_B P2F; coiled coil domain 24.5 59 0.002 22.0 2.7 24 12-35 2-25 (28)
148 1hjb_A Ccaat/enhancer binding 24.5 60 0.0021 28.1 3.7 32 10-41 36-67 (87)
149 1jnm_A Proto-oncogene C-JUN; B 24.4 31 0.0011 27.6 1.8 28 12-39 24-51 (62)
150 3tnu_B Keratin, type II cytosk 24.4 1.1E+02 0.0037 27.8 5.6 18 4-21 37-54 (129)
151 4emc_A Monopolin complex subun 24.4 1.2E+02 0.0042 29.8 6.2 39 4-42 21-59 (190)
152 2wt7_B Transcription factor MA 24.4 76 0.0026 27.7 4.3 33 11-43 49-81 (90)
153 1a93_B MAX protein, coiled coi 24.3 52 0.0018 23.9 2.6 23 3-25 7-29 (34)
154 1wt6_A Myotonin-protein kinase 24.2 1.5E+02 0.0051 25.4 5.9 24 24-47 31-54 (81)
155 2akf_A Coronin-1A; coiled coil 24.2 1.2E+02 0.0041 21.3 4.3 29 6-34 2-30 (32)
156 4gkw_A Spindle assembly abnorm 24.2 1.4E+02 0.0047 27.9 6.1 29 2-30 59-87 (167)
157 3oti_A CALG3; calicheamicin, T 24.1 1E+02 0.0035 31.7 6.1 87 334-425 305-396 (398)
158 1t2k_D Cyclic-AMP-dependent tr 23.9 1.6E+02 0.0055 23.2 5.9 33 11-43 23-55 (61)
159 3rsc_A CALG2; TDP, enediyne, s 23.7 97 0.0033 31.9 5.9 90 334-426 319-413 (415)
160 2f1m_A Acriflavine resistance 23.5 1.3E+02 0.0045 29.6 6.6 54 2-55 73-137 (277)
161 3oja_A Leucine-rich immune mol 23.5 99 0.0034 33.5 6.1 20 24-43 449-468 (487)
162 2bni_A General control protein 23.4 1E+02 0.0035 22.3 4.0 27 6-32 4-30 (34)
163 3jsv_C NF-kappa-B essential mo 22.8 1.7E+02 0.0057 25.8 6.1 35 4-38 3-37 (94)
164 1m1j_C Fibrinogen gamma chain; 22.8 1E+02 0.0035 33.7 5.9 44 2-45 90-133 (409)
165 3azd_A Short alpha-tropomyosin 22.6 24 0.00083 25.8 0.7 30 4-33 5-34 (37)
166 1fxk_A Prefoldin; archaeal pro 22.4 99 0.0034 26.5 4.8 40 5-44 67-106 (107)
167 1zxa_A CGMP-dependent protein 22.3 97 0.0033 25.7 4.3 39 2-40 17-55 (67)
168 1lwu_B Fibrinogen beta chain; 21.9 1.3E+02 0.0045 31.7 6.4 45 2-46 8-57 (323)
169 1uii_A Geminin; human, DNA rep 21.6 1.4E+02 0.0048 25.7 5.3 32 6-37 49-80 (83)
170 2o6l_A UDP-glucuronosyltransfe 21.4 51 0.0017 29.8 2.8 70 334-406 92-164 (170)
171 4e61_A Protein BIM1; EB1-like 21.4 1.6E+02 0.0054 26.5 5.8 34 5-38 6-39 (106)
172 2dgc_A Protein (GCN4); basic d 21.3 84 0.0029 25.4 3.7 29 10-38 30-58 (63)
173 3swf_A CGMP-gated cation chann 21.0 2.2E+02 0.0074 24.1 6.2 34 8-41 5-38 (74)
174 1wt6_A Myotonin-protein kinase 21.0 1.9E+02 0.0066 24.7 6.0 42 2-43 30-71 (81)
175 1nkp_B MAX protein, MYC proto- 20.9 99 0.0034 25.8 4.3 29 12-40 49-77 (83)
176 3i00_A HIP-I, huntingtin-inter 20.7 2.2E+02 0.0076 25.8 6.9 17 5-21 17-33 (120)
177 1fmh_A General control protein 20.4 1.8E+02 0.0063 20.3 4.6 26 13-38 4-29 (33)
178 3trt_A Vimentin; cytoskeleton, 20.1 1.3E+02 0.0044 24.6 4.8 10 34-43 52-61 (77)
179 2xv5_A Lamin-A/C; structural p 20.1 1.8E+02 0.0061 24.3 5.6 39 8-46 3-41 (74)
180 4ani_A Protein GRPE; chaperone 20.1 1.8E+02 0.006 29.1 6.5 36 3-38 59-94 (213)
181 1gk4_A Vimentin; intermediate 20.0 2.2E+02 0.0076 23.9 6.3 26 19-44 35-60 (84)
No 1
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=100.00 E-value=1.3e-46 Score=393.53 Aligned_cols=150 Identities=31% Similarity=0.564 Sum_probs=139.6
Q ss_pred cCCCCCCCeEEEEEeccCcHHHHHHHHHhcCCCCccEEEEEecCCCCCCCCCCCCCC---CcCEEEEeCCCCCccccCCC
Q psy11113 545 GSNKQREQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDI---GVPVVVVRTNTNDLNNRFKP 621 (699)
Q Consensus 545 ~~~~p~~~FT~vI~ty~R~~~L~~~l~~l~~~p~l~kIvVvWn~~~~pp~~~~wp~~---~vpV~vi~~~~nSLnnRF~P 621 (699)
.|+.+.++|||||+||+|.+.|+++|++|++||+|+||+||||++++|||+..||.+ ++||+|+++++|||||||+|
T Consensus 22 ~g~~~~~~FTvvi~ty~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~~vpv~v~~~~~nsLnnRF~p 101 (293)
T 1omz_A 22 PSKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQV 101 (293)
T ss_dssp ----CTTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSC
T ss_pred CCCCCCCceEEEEEeecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhccccCCCCccEEEEeCCCCchhhccCC
Confidence 367789999999999999999999999999999999999999999988887779876 59999999999999999999
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccccCCccccccCCCCCCeeecc--------cCCceeeEEecCC
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHAWDQNNQGGWLYNS--------NYSCELSMAKEVI 693 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~~R~H~wd~~~~~~W~Y~s--------~~s~~ySMVLT~~ 693 (699)
+++|+|||||++|||+.++|+||+|||+|||+||||||||++|+|.||. +|.|+|++ +|+++|||||||+
T Consensus 102 ~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~~R~H~~~~--~~~w~Y~~~~~~~p~~~~~~~YSmVLTga 179 (293)
T 1omz_A 102 FPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTS--SGIYSYGGFELQTPGPGNGDQYSMVLIGA 179 (293)
T ss_dssp CTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEE--TTEEEEECTTSCCCSSSSSCCBSEECTTE
T ss_pred CccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCchhhhccCC--CCccccccccccccccCCCCeEEEEECch
Confidence 9999999999999999999999999999999999999999999999985 58899998 6899999999999
Q ss_pred Ccc
Q psy11113 694 NES 696 (699)
Q Consensus 694 a~~ 696 (699)
||-
T Consensus 180 AF~ 182 (293)
T 1omz_A 180 SFF 182 (293)
T ss_dssp EEE
T ss_pred HHh
Confidence 983
No 2
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=96.03 E-value=0.021 Score=52.06 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=46.0
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~ 409 (699)
++..++|||++||||||.+ +.. -...+++.-... .++..+..++.+.|..+ .++...+|.++++..-++
T Consensus 87 ~~~~~~Eama~G~vPvi~~-~~~-~~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 157 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIAN-SPL-SATRQFALDERS--LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALN 157 (166)
T ss_dssp CCHHHHHHHHTTCCEEEEC-CTT-CGGGGGCSSGGG--EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhcCCCcEEee-CCC-CchhhhccCCce--EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999995 321 123455554444 55667777766554443 567788898888765444
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=95.28 E-value=0.073 Score=54.65 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=67.5
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss 413 (699)
+++..++|||++|| |||.+ |. -...+++.-. ..+.++..+..++.+.|..+ .++...+|.++++...+..|+
T Consensus 291 ~~~~~~~Ea~a~G~-PvI~~-~~--~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s- 364 (394)
T 3okp_A 291 GLGIVYLEAQACGV-PVIAG-TS--GGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWS- 364 (394)
T ss_dssp SSCHHHHHHHHTTC-CEEEC-SS--TTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTB-
T ss_pred ccCcHHHHHHHcCC-CEEEe-CC--CChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC-
Confidence 34677999999995 88888 64 3456777766 78888888888777665544 677788999999877776564
Q ss_pred hHHHHHHHHHHHHhhcC
Q psy11113 414 LQSQMDTLVAVVRDRLG 430 (699)
Q Consensus 414 ~~~iv~TtL~iL~~R~~ 430 (699)
.+.++..+++++++-++
T Consensus 365 ~~~~~~~~~~~~~~~~r 381 (394)
T 3okp_A 365 WEIMGERLTNILQSEPR 381 (394)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 57888888988887654
No 4
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=95.21 E-value=0.031 Score=52.46 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=48.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC---CHHHHHHHHHhhHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI---SDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si---s~e~i~~Mrrq~r~v~~~ 409 (699)
++..++|||++|| |||.+ |.- .+.+++ -....+.++..+..++.+.|..+ .++...+|.++++...+.
T Consensus 128 ~~~~~~Ea~a~G~-PvI~~-~~~--~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 128 FGLVALEAMCLGA-IPIAS-AVG--GLRDII-TNETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp SCHHHHHHHHTTC-EEEEE-SCH--HHHHHC-CTTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCC-CEEEe-CCC--ChHHHc-CCCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3566999999998 67777 532 345666 44556677777887776655443 678889999999887776
No 5
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=94.80 E-value=0.088 Score=55.38 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=61.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++|||++|| |||.+ |. -.+.+++.-....+.++..+..+|.+.|..+ .++...+|.++++...+. |+ .
T Consensus 338 ~~~~~~Eama~G~-PvI~~-~~--~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s-~ 411 (438)
T 3c48_A 338 FGLVAMEAQASGT-PVIAA-RV--GGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHART-FS-W 411 (438)
T ss_dssp SCHHHHHHHHTTC-CEEEE-SC--TTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HH-H
T ss_pred CchHHHHHHHcCC-CEEec-CC--CChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CC-H
Confidence 3567999999998 78888 63 2355677666667778887887776655443 466788898888877777 44 4
Q ss_pred HHHHHHHHHHHHhhc
Q psy11113 415 QSQMDTLVAVVRDRL 429 (699)
Q Consensus 415 ~~iv~TtL~iL~~R~ 429 (699)
+.++..++++++.=+
T Consensus 412 ~~~~~~~~~~~~~~~ 426 (438)
T 3c48_A 412 AATAAQLSSLYNDAI 426 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666666544
No 6
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=94.50 E-value=0.17 Score=52.59 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=61.7
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++| +|||.+ |.- .+.+++.=....+.++..+..+|.+.|..+ .++...+|.++++...+..|+ .
T Consensus 297 ~~~~~~EAma~G-~PvI~~-~~~--~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s-~ 371 (394)
T 2jjm_A 297 FGLVLLEAMACG-VPCIGT-RVG--GIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFR-S 371 (394)
T ss_dssp CCHHHHHHHHTT-CCEEEE-CCT--TSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSC-H
T ss_pred CchHHHHHHhcC-CCEEEe-cCC--ChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCC-H
Confidence 456799999999 577787 642 345777666677788888888776655443 566788899888876655454 4
Q ss_pred HHHHHHHHHHHHhhc
Q psy11113 415 QSQMDTLVAVVRDRL 429 (699)
Q Consensus 415 ~~iv~TtL~iL~~R~ 429 (699)
+.+++..++++++=+
T Consensus 372 ~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 372 EKIVSQYETIYYDVL 386 (394)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777776543
No 7
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=93.82 E-value=0.14 Score=52.91 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=63.8
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++..++|||++|| |||.+ |.- .+.+++.=....+.++..+..++.+.|..+ .++...+|.++++...+ .| +.
T Consensus 296 ~~~~~~Ea~a~G~-PvI~~-~~~--~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~-s~ 369 (406)
T 2gek_A 296 FGIVLVEAMAAGT-AVVAS-DLD--AFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH-RY-DW 369 (406)
T ss_dssp SCHHHHHHHHHTC-EEEEC-CCH--HHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG-BH
T ss_pred CchHHHHHHHcCC-CEEEe-cCC--cHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC-CH
Confidence 3567999999998 78888 652 244666655667788888888777765554 56778889998887776 44 45
Q ss_pred HHHHHHHHHHHHhhcC
Q psy11113 415 QSQMDTLVAVVRDRLG 430 (699)
Q Consensus 415 ~~iv~TtL~iL~~R~~ 430 (699)
+.++..+++++++-+.
T Consensus 370 ~~~~~~~~~~~~~~~~ 385 (406)
T 2gek_A 370 SVVSAQIMRVYETVSG 385 (406)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6778888887776654
No 8
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=93.46 E-value=0.12 Score=52.71 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=50.0
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEecc-CCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLP-VARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ip-e~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~y 410 (699)
++.-++|||++|| |||.+ |.- ...+++.=....+.++ ..+..++.+.|..+ .++...+|.++++...+.|
T Consensus 283 ~~~~~~Ea~a~G~-Pvi~~-~~~--~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 355 (374)
T 2iw1_A 283 AGIVLLEAITAGL-PVLTT-AVC--GYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQ 355 (374)
T ss_dssp SCHHHHHHHHHTC-CEEEE-TTS--TTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHCCC-CEEEe-cCC--CchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh
Confidence 4567999999998 88888 642 3345555455667776 66777766655443 5777889999998877775
No 9
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=92.50 E-value=0.6 Score=48.42 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=61.1
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC---CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI---SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si---s~e~i~~Mrrq~r~v~~~yfss 413 (699)
++.-++|||++|| |||.+ |.- ...++++=. ..+.++..+..++.+.|..+ .++...+|.++++...++ | +
T Consensus 343 ~~~~~~EAma~G~-Pvi~s-~~~--~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~-~-s 415 (439)
T 3fro_A 343 FGLVALEAMCLGA-IPIAS-AVG--GLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMS-F-S 415 (439)
T ss_dssp SCHHHHHHHHTTC-EEEEE-SST--HHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHT-S-C
T ss_pred ccHHHHHHHHCCC-CeEEc-CCC--CcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhh-C-c
Confidence 4567999999995 78888 642 345667433 67778888888777655433 356778899988877655 4 4
Q ss_pred hHHHHHHHHHHHHhhc
Q psy11113 414 LQSQMDTLVAVVRDRL 429 (699)
Q Consensus 414 ~~~iv~TtL~iL~~R~ 429 (699)
.+.++...++++++=+
T Consensus 416 ~~~~~~~~~~~~~~~~ 431 (439)
T 3fro_A 416 WEKSAERYVKAYTGSI 431 (439)
T ss_dssp HHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888887654
No 10
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=92.17 E-value=0.25 Score=53.34 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=59.3
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++|| |||.+ |.- ...|++.=....+.++..+..++.+.|..+ .++...+|.++++...+..|+ .
T Consensus 371 ~~~~~lEAma~G~-PvI~s-~~~--g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs-~ 445 (499)
T 2r60_A 371 FGLAPVEAMASGL-PAVVT-RNG--GPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYT-W 445 (499)
T ss_dssp CCSHHHHHHHTTC-CEEEE-SSB--HHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSB-H
T ss_pred CCcHHHHHHHcCC-CEEEe-cCC--CHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCC-H
Confidence 3567999999998 78888 632 345666655566777777887766654432 466688898888877666554 3
Q ss_pred HHHHHHHHHHHHhhc
Q psy11113 415 QSQMDTLVAVVRDRL 429 (699)
Q Consensus 415 ~~iv~TtL~iL~~R~ 429 (699)
+.++..+++++++=+
T Consensus 446 ~~~~~~~~~~y~~~~ 460 (499)
T 2r60_A 446 QETARGYLEVIQEIA 460 (499)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666555443
No 11
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=91.99 E-value=0.21 Score=52.10 Aligned_cols=89 Identities=9% Similarity=0.097 Sum_probs=59.2
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcce---------------EE--eccCCCHHHHHHHHhcC-CHHHHHH
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKI---------------LI--PLPVARIPELHLLLRSI-SDEDIVA 398 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~f---------------sV--~ipe~~l~~L~~iL~si-s~e~i~~ 398 (699)
++.-++|||++|| |||.+ |.- .+.|+++=..- .+ .++..+..+|.+.|+-+ .++...+
T Consensus 286 ~~~~~lEAma~G~-PvI~s-~~~--g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i~l~~~~~~~~~ 361 (413)
T 3oy2_A 286 FGLCSAEGAVLGK-PLIIS-AVG--GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAFTFFKDEKNRKE 361 (413)
T ss_dssp SCHHHHHHHTTTC-CEEEE-CCH--HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHHHHTTSHHHHHH
T ss_pred CCcHHHHHHHcCC-CEEEc-CCC--ChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHHHHhcCHHHHHH
Confidence 4567999999996 88888 642 23455533222 44 56666777776655333 3555688
Q ss_pred HHHhhHHHHHhhhhchHHHHHHHHHHHHhhcC
Q psy11113 399 FRHQGRQVFTRYLATLQSQMDTLVAVVRDRLG 430 (699)
Q Consensus 399 Mrrq~r~v~~~yfss~~~iv~TtL~iL~~R~~ 430 (699)
|.++++...+..| +.+.++..+++++++-+.
T Consensus 362 ~~~~a~~~~~~~f-s~~~~~~~~~~~~~~~~~ 392 (413)
T 3oy2_A 362 YGKRVQDFVKTKP-TWDDISSDIIDFFNSLLR 392 (413)
T ss_dssp HHHHHHHHHTTSC-CHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHh
Confidence 8888887766555 466788888888877653
No 12
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=91.81 E-value=0.054 Score=59.54 Aligned_cols=108 Identities=14% Similarity=0.220 Sum_probs=74.9
Q ss_pred CeEEEEEeccCcH-HHHHHHHHhcC-C-CC-ccEEEEEecCCCCCCCCCCCCCCCcCEEEEeCCCCC--ccccCCCCCCC
Q psy11113 552 QFTIIILTYERDQ-VLINSLSRLNN-L-PY-LNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTND--LNNRFKPYDVI 625 (699)
Q Consensus 552 ~FT~vI~ty~R~~-~L~~~l~~l~~-~-p~-l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~nS--LnnRF~P~~~I 625 (699)
..+|||-+|++.. .|.+.|+.+.. . +. ..+||||=+........... .-...|++++.+.|. -..|-.=....
T Consensus 67 ~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~-~~~~~v~vi~~~~n~G~~~A~N~G~~~A 145 (501)
T 2ffu_A 67 ATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALL-GKIEKVRVLRNDRREGLMRSRVRGADAA 145 (501)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGG-GGBTTEEEEECSSCCHHHHHHHHHHHHC
T ss_pred CEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHH-hcCCCEEEEECCCCcCHHHHHHHHHHhc
Confidence 5999999999986 89999999864 2 22 24899887765432110000 112358888877662 01111111234
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 626 ETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 626 ~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
.+|.|+.||+|..++.+-|+-....+++.++.+||
T Consensus 146 ~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~ 180 (501)
T 2ffu_A 146 QAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVS 180 (501)
T ss_dssp CSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred CCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEE
Confidence 78999999999999999999999999999988876
No 13
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=91.79 E-value=0.34 Score=50.68 Aligned_cols=84 Identities=11% Similarity=0.089 Sum_probs=55.5
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++|| |||.+ |.- ...+++.=....+.++ +..+|.+.|..+ .++...+|.++++...+..|+ .
T Consensus 328 ~~~~~lEAma~G~-PvI~~-~~~--g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs-~ 400 (416)
T 2x6q_A 328 FGLTVTEAMWKGK-PVIGR-AVG--GIKFQIVDGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFI-I 400 (416)
T ss_dssp SCHHHHHHHHTTC-CEEEE-SCH--HHHHHCCBTTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTB-H
T ss_pred CccHHHHHHHcCC-CEEEc-cCC--CChhheecCCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcC-H
Confidence 4567999999998 78888 642 2345554444555555 666665544433 567788899988876665554 5
Q ss_pred HHHHHHHHHHHHh
Q psy11113 415 QSQMDTLVAVVRD 427 (699)
Q Consensus 415 ~~iv~TtL~iL~~ 427 (699)
+.+++..++++++
T Consensus 401 ~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 401 TKHMERYLDILNS 413 (416)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777654
No 14
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=91.67 E-value=0.23 Score=50.74 Aligned_cols=83 Identities=11% Similarity=0.049 Sum_probs=55.4
Q ss_pred hhHHHHHhcCceEEEEeCCCccCCc------ccccCCcceEEeccCCC--HHHHHHHHhcCCHHHHHHHHHhhHHHHHhh
Q psy11113 339 MRLYEALKYGAVPVIVGGDNVMLPF------EEVLDWNKILIPLPVAR--IPELHLLLRSISDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 339 ~Rl~eAL~~GCIPVIis~d~~~LPF------~dvIDW~~fsV~ipe~~--l~~L~~iL~sis~e~i~~Mrrq~r~v~~~y 410 (699)
.-++|||++|| |||.+ +.--.|. .++++-.. .+.++..+ ..+|.+.|..+.++...+|.++++...+.
T Consensus 265 ~~~~EAma~G~-Pvi~~-~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~- 340 (364)
T 1f0k_A 265 LTVSEIAAAGL-PALFV-PFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIP- 340 (364)
T ss_dssp HHHHHHHHHTC-CEEEC-CCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTCCHHHHHHHHHHHHHTCCT-
T ss_pred HHHHHHHHhCC-CEEEe-eCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhcCHHHHHHHHHHHHHhhcc-
Confidence 45899999997 88888 6433332 13454444 77888877 78888888877666678888888765443
Q ss_pred hhchHHHHHHHHHHHH
Q psy11113 411 LATLQSQMDTLVAVVR 426 (699)
Q Consensus 411 fss~~~iv~TtL~iL~ 426 (699)
| +.+.+++.+++.++
T Consensus 341 ~-~~~~~~~~~~~~y~ 355 (364)
T 1f0k_A 341 D-ATERVANEVSRVAR 355 (364)
T ss_dssp T-HHHHHHHHHHHHHT
T ss_pred C-HHHHHHHHHHHHHH
Confidence 3 34556665555443
No 15
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=91.51 E-value=0.42 Score=51.71 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=65.0
Q ss_pred CcHHHHHHHhhhhcCCCCCeEEEEecccCCCCCCCCcchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccC
Q psy11113 236 SPSIEASSLTKYLTTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRN 315 (699)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~d~~~~~~~c~~~~~~c~~~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (699)
.|..+++.|.++ -. +..-..|.+. .|.......++|++-+|.|..--. . -+||
T Consensus 194 ~R~~~~~~L~k~-----i~-Vd~~G~c~~~--~~~~~~~~~~~l~~YKFyLafENs--~----c~dY------------- 246 (371)
T 2nzw_A 194 IRNAFYDALNSI-----EP-VTGGGSVRNT--LGYNVKNKNEFLSQYKFNLCFENT--Q----GYGY------------- 246 (371)
T ss_dssp HHHHHHHHHTTT-----SC-CEECSSTTCC--SSSCCSCHHHHHTTEEEEEEECSS--C----CTTC-------------
T ss_pred HHHHHHHHHhCc-----CC-EeeCCCccCC--CCCccccHHHHHhcCcEEEEEecc--C----CCCc-------------
Confidence 356677777653 12 2222255431 222234577899999999954222 0 1122
Q ss_pred CCCCccccchhhhhhccccccchhhHHHHHhcCceEEEEeCCCc--cCCcccccCCcceEEeccCCCHHHHHHHHhcCC-
Q psy11113 316 RHSDEETVEDDRAERYASTIGIQMRLYEALKYGAVPVIVGGDNV--MLPFEEVLDWNKILIPLPVARIPELHLLLRSIS- 392 (699)
Q Consensus 316 ~~~d~~~~~~~~~~~~~~s~~~s~Rl~eAL~~GCIPVIis~d~~--~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis- 392 (699)
++-.|++||.+|||||++++.++ .+|=...|+-.+| +...+|.+.|+.+.
T Consensus 247 ---------------------vTEK~~~al~~g~VPI~~G~~~~~~~~Pp~SfI~~~dF------~s~~~La~yL~~L~~ 299 (371)
T 2nzw_A 247 ---------------------VTEKIIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDF------KNFDEAIDYIKYLHT 299 (371)
T ss_dssp ---------------------CCTHHHHHHHTTCEEEEESCTTGGGTSCGGGSEEGGGS------SSHHHHHHHHHHHHT
T ss_pred ---------------------ccHHHHHHHhCCeEEEEECCCchhhhCCCCceEEcccC------CCHHHHHHHHHHHhc
Confidence 36789999999999999995544 2443445555544 45667777777654
Q ss_pred -HHHHHHH
Q psy11113 393 -DEDIVAF 399 (699)
Q Consensus 393 -~e~i~~M 399 (699)
++.+.++
T Consensus 300 n~~~Y~~y 307 (371)
T 2nzw_A 300 HKNAYLDM 307 (371)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 3444443
No 16
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=90.88 E-value=0.69 Score=48.92 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=49.0
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcCCHHHHHHHHHhhHHHHHh
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~sis~e~i~~Mrrq~r~v~~~ 409 (699)
...++|+|++|+ |||++ +.-.+ .+++.=....+.++ ++.++.+.|..+.++++.+|+++++..-+.
T Consensus 254 P~Kl~eymA~G~-PVI~~-~~~~~--~~~v~~~~~G~~~~--~~~e~~~~i~~l~~~~~~~m~~na~~~a~~ 319 (339)
T 3rhz_A 254 SYKLGSFLAAGI-PVIVQ-EGIAN--QELIENNGLGWIVK--DVEEAIMKVKNVNEDEYIELVKNVRSFNPI 319 (339)
T ss_dssp CHHHHHHHHHTC-CEEEE-TTCTT--THHHHHHTCEEEES--SHHHHHHHHHHCCHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHcCC-CEEEc-cChhH--HHHHHhCCeEEEeC--CHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 457999999996 99998 54333 24454455566664 578898888899999999999999866443
No 17
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=90.82 E-value=0.12 Score=56.01 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=75.5
Q ss_pred CeEEEEEeccCc-HHHHHHHHHhcCCCC--c-cEEEEEecCCCCC-CCC-C-CC-CCCCcCEEEEeCCCCC-c-cccCCC
Q psy11113 552 QFTIIILTYERD-QVLINSLSRLNNLPY--L-NKVVVVWNSVQPP-RED-L-RW-PDIGVPVVVVRTNTND-L-NNRFKP 621 (699)
Q Consensus 552 ~FT~vI~ty~R~-~~L~~~l~~l~~~p~--l-~kIvVvWn~~~~p-p~~-~-~w-p~~~vpV~vi~~~~nS-L-nnRF~P 621 (699)
..+|||-+|++. +.|.+.|+.+.+..+ + .+||||=|....+ ... . .+ ...+..|++++.+.|. + ..|-.=
T Consensus 30 ~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~G~~~a~N~g 109 (472)
T 1xhb_A 30 TTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKG 109 (472)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCCCHHHHHHHH
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCCChHHHHHHH
Confidence 589999999999 999999999975432 2 4899887665432 110 0 00 0112258999887662 0 011111
Q ss_pred CCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 622 YDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
...-..|.|+.||+|..++.+-|+-.....++.|+-+|+
T Consensus 110 ~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~ 148 (472)
T 1xhb_A 110 AAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVC 148 (472)
T ss_dssp HHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEE
T ss_pred HHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEE
Confidence 123568999999999999999999999999999877765
No 18
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=89.71 E-value=0.12 Score=50.40 Aligned_cols=109 Identities=10% Similarity=0.165 Sum_probs=72.5
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCc-cEEEEEecCCCCCCCC--CCCCCCCcCEEEEeCC--------CCC-c-ccc
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYL-NKVVVVWNSVQPPRED--LRWPDIGVPVVVVRTN--------TND-L-NNR 618 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l-~kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~--------~nS-L-nnR 618 (699)
..|+||-+|++.+.|.+.|+.+.+..+- -+|+||=++....... ..+-. ...|+++..+ .|. + .+|
T Consensus 2 ~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G~~~a~ 80 (255)
T 1qg8_A 2 KVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-DNRVRFYQSDISGVKERTEKTRYAALI 80 (255)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-STTEEEEECCCCSHHHHHSSCHHHHHH
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh-cCCEEEEecccccccccccccCHHHHH
Confidence 4789999999999999999999764433 3677765543221100 01211 3468888876 441 1 111
Q ss_pred CCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC-Ccccc
Q psy11113 619 FKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD-RIVGF 661 (699)
Q Consensus 619 F~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd-RiVGF 661 (699)
-.=....+++-|+.+|+|..+..+-|+-......++|+ -+||.
T Consensus 81 N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~ 124 (255)
T 1qg8_A 81 NQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYS 124 (255)
T ss_dssp HHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEe
Confidence 11122358899999999999999999999999998875 34443
No 19
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=88.11 E-value=0.2 Score=48.24 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=69.6
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCC-ccEEEEEecCCCCCCCCC--CCCCCCcCEEEEeCCCCCcc-ccCCCCCCCCc
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPY-LNKVVVVWNSVQPPREDL--RWPDIGVPVVVVRTNTNDLN-NRFKPYDVIET 627 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~-l~kIvVvWn~~~~pp~~~--~wp~~~vpV~vi~~~~nSLn-nRF~P~~~I~T 627 (699)
..++||-+|++.+.|.+.|+.+.+..+ --+||||=|+........ .+..-...|+++..+..... +|-.=....++
T Consensus 6 ~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~~~a~N~g~~~a~g 85 (240)
T 3bcv_A 6 KVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIHKKNAGLGMACNSGLDVATG 85 (240)
T ss_dssp SEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHCCS
T ss_pred cEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHHHcCC
Confidence 589999999999999999999975333 237777766542211100 01000124777764322110 11111223578
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHHhcCCCccccC
Q psy11113 628 EAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFP 662 (699)
Q Consensus 628 eAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF~ 662 (699)
+-|+.+|+|..+..+-|+-.....++....+|...
T Consensus 86 ~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 86 EYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp SEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred CEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999999998887544455443
No 20
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=87.92 E-value=0.15 Score=57.44 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=74.8
Q ss_pred CeEEEEEeccCc-HHHHHHHHHhcCC--CCc-cEEEEEecCCCCCC-CCC--CCCCCCcCEEEEeCCCCC--ccccCCCC
Q psy11113 552 QFTIIILTYERD-QVLINSLSRLNNL--PYL-NKVVVVWNSVQPPR-EDL--RWPDIGVPVVVVRTNTND--LNNRFKPY 622 (699)
Q Consensus 552 ~FT~vI~ty~R~-~~L~~~l~~l~~~--p~l-~kIvVvWn~~~~pp-~~~--~wp~~~vpV~vi~~~~nS--LnnRF~P~ 622 (699)
..+|||-+|++. +.|.+.|+.+.+. +.+ .+||||=|+...+. ... .+-.-...|+|++.++|. -..|-.=.
T Consensus 113 ~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n~G~~~A~N~G~ 192 (570)
T 2d7i_A 113 NTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKREGLIRTRMLGA 192 (570)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSCCCHHHHHHHHH
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCCCCHHHHHHHHH
Confidence 689999999998 9999999999742 222 38998877654332 100 000011358888877651 11111111
Q ss_pred CCCCccEEEEecCCcccCHHHHHHHHHHHHhcCCCccc
Q psy11113 623 DVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVG 660 (699)
Q Consensus 623 ~~I~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVG 660 (699)
...++|-|+.||+|+.++.+-|+-.....++.++-+||
T Consensus 193 ~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~ 230 (570)
T 2d7i_A 193 SVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVC 230 (570)
T ss_dssp HHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEE
T ss_pred HhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEe
Confidence 23578999999999999999999999999999988776
No 21
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=87.73 E-value=2 Score=45.80 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=56.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCc---------ceEEeccCCCHHHHHHHHhcC-----CHHHHHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWN---------KILIPLPVARIPELHLLLRSI-----SDEDIVAFRHQ 402 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~---------~fsV~ipe~~l~~L~~iL~si-----s~e~i~~Mrrq 402 (699)
++.-++|||++|| |||.+ |.- .+.|++.=. ...+.++..+..+|.+.|..+ .++...+|.++
T Consensus 379 ~g~~~lEAma~G~-PvI~s-~~g--g~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~ 454 (485)
T 2qzs_A 379 CGLTQLYGLKYGT-LPLVR-RTG--GLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRFVQRQ 454 (485)
T ss_dssp SCSHHHHHHHHTC-EEEEE-SSH--HHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CcHHHHHHHHCCC-CEEEC-CCC--CccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566899999996 67777 532 234666543 567778888888776655443 56667788877
Q ss_pred hHHHHHhhhhchHHHHHHHHHHHHhhc
Q psy11113 403 GRQVFTRYLATLQSQMDTLVAVVRDRL 429 (699)
Q Consensus 403 ~r~v~~~yfss~~~iv~TtL~iL~~R~ 429 (699)
++. ..| +.+.++...++++++-+
T Consensus 455 ~~~---~~f-s~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 455 AMA---MDF-SWQVAAKSYRELYYRLK 477 (485)
T ss_dssp HHH---CCC-CHHHHHHHHHHHHHHHC
T ss_pred HHh---hcC-CHHHHHHHHHHHHHHhh
Confidence 763 434 45677777777776544
No 22
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=86.46 E-value=2.3 Score=45.35 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=56.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCc---------ceEEeccCCCHHHHHHHHhcC-----CHHHHHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWN---------KILIPLPVARIPELHLLLRSI-----SDEDIVAFRHQ 402 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~---------~fsV~ipe~~l~~L~~iL~si-----s~e~i~~Mrrq 402 (699)
++.-++|||++|| |||.+ |.- ...|++.=. ...+.++..+..+|.+.|..+ .++...+|.++
T Consensus 378 ~~~~~lEAma~G~-PvI~s-~~g--g~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~ 453 (485)
T 1rzu_A 378 CGLTQLYALRYGC-IPVVA-RTG--GLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQMQKL 453 (485)
T ss_dssp SCSHHHHHHHHTC-EEEEE-SSH--HHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCC-CEEEe-CCC--ChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566899999997 67777 542 234555433 556777888888776654442 46667788877
Q ss_pred hHHHHHhhhhchHHHHHHHHHHHHhhcC
Q psy11113 403 GRQVFTRYLATLQSQMDTLVAVVRDRLG 430 (699)
Q Consensus 403 ~r~v~~~yfss~~~iv~TtL~iL~~R~~ 430 (699)
++. ..| +.+.++..++++.++-+.
T Consensus 454 ~~~---~~f-s~~~~~~~~~~~y~~~~~ 477 (485)
T 1rzu_A 454 GMK---SDV-SWEKSAGLYAALYSQLIS 477 (485)
T ss_dssp HHT---CCC-BHHHHHHHHHHHHHHHTC
T ss_pred HHH---HhC-ChHHHHHHHHHHHHHhhC
Confidence 752 334 456788888888776553
No 23
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=84.77 E-value=1.1 Score=51.70 Aligned_cols=109 Identities=23% Similarity=0.321 Sum_probs=74.6
Q ss_pred CCeEEEEEeccCcHHHHHHHHHhcCCCC----ccEEEEEecCCCCCCCCCCCC----CCCcCEEEEeCCCCC-c---ccc
Q psy11113 551 EQFTIIILTYERDQVLINSLSRLNNLPY----LNKVVVVWNSVQPPREDLRWP----DIGVPVVVVRTNTND-L---NNR 618 (699)
Q Consensus 551 ~~FT~vI~ty~R~~~L~~~l~~l~~~p~----l~kIvVvWn~~~~pp~~~~wp----~~~vpV~vi~~~~nS-L---nnR 618 (699)
-+.+|||.||++.+.|.+.|..+.+..+ ..+||||=|+...+....... .....|+++..+ |. . .|+
T Consensus 180 pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~~-N~G~a~a~N~ 258 (657)
T 4fix_A 180 ANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQP-NLGGSGGYSR 258 (657)
T ss_dssp CCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEECC-CCHHHHHHHH
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEECC-CCCHHHHHHH
Confidence 4799999999999999999999987543 458999988764321111000 012468888876 52 1 111
Q ss_pred CCCC--CCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC-Cccc
Q psy11113 619 FKPY--DVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD-RIVG 660 (699)
Q Consensus 619 F~P~--~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd-RiVG 660 (699)
=.-. .+-..|-|+.||||+.+..+-|+-.....+.+|+ -+||
T Consensus 259 Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg 303 (657)
T 4fix_A 259 VMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVG 303 (657)
T ss_dssp HHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEE
T ss_pred HHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEE
Confidence 0000 0014589999999999999999999999988875 3555
No 24
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=84.28 E-value=0.41 Score=44.55 Aligned_cols=48 Identities=23% Similarity=0.225 Sum_probs=31.7
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS 390 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s 390 (699)
+.-++|||++|| |||.+ |.- .+.+++.-....+.+ ..+..++.+.|..
T Consensus 111 ~~~~~Eama~G~-PvI~~-~~~--~~~e~i~~~~~g~~~-~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 111 GLTPIEAMASGK-PVIAV-NEG--GFKETVINEKTGYLV-NADVNEIIDAMKK 158 (177)
T ss_dssp CHHHHHHHHTTC-CEEEE-SSH--HHHHHCCBTTTEEEE-CSCHHHHHHHHHH
T ss_pred ChHHHHHHHcCC-cEEEe-CCC--CHHHHhcCCCccEEe-CCCHHHHHHHHHH
Confidence 456899999998 78887 642 345666555555555 6677766655443
No 25
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=82.74 E-value=1.8 Score=43.79 Aligned_cols=81 Identities=17% Similarity=0.092 Sum_probs=54.5
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCC--cceEEeccCCCHHHHHHHHhcCCHHHHHHHHHhhHHHHHhhhhch
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDW--NKILIPLPVARIPELHLLLRSISDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW--~~fsV~ipe~~l~~L~~iL~sis~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
++.-++|||++|| |||.+ |. -...|++.- ....+.++. +..++.+.|..+-+ +++++......|+ .
T Consensus 254 ~~~~~~EAma~G~-PvI~s-~~--~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~------~~~~~~~~~~~~s-~ 321 (342)
T 2iuy_A 254 GATVVSEAAVSGT-PVVGT-GN--GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA------SDEVRRAAVRLWG-H 321 (342)
T ss_dssp CCHHHHHHHHTTC-CEEEC-CT--TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC------HHHHHHHHHHHHB-H
T ss_pred ccHHHHHHHhcCC-CEEEc-CC--CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH------HHHHHHHHHHhcC-H
Confidence 4667999999997 88888 64 345677766 667778888 99999888877665 3344433333333 4
Q ss_pred HHHHHHHHHHHHhhc
Q psy11113 415 QSQMDTLVAVVRDRL 429 (699)
Q Consensus 415 ~~iv~TtL~iL~~R~ 429 (699)
+.+++..++++++=+
T Consensus 322 ~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 322 VTIAERYVEQYRRLL 336 (342)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666665544
No 26
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=79.49 E-value=6.5 Score=43.45 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=54.9
Q ss_pred chhhHHHHHhcCc----eEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHH-hc--CCHHHHHHHHHhhHHHHHh
Q psy11113 337 IQMRLYEALKYGA----VPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLL-RS--ISDEDIVAFRHQGRQVFTR 409 (699)
Q Consensus 337 ~s~Rl~eAL~~GC----IPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL-~s--is~e~i~~Mrrq~r~v~~~ 409 (699)
+..-.+|||++|+ -|||++ +..= -.+.|+ -++.++..+..++.+.| +. .++++..+|.++++..-++
T Consensus 364 fgLv~lEAmA~g~~~~~gpvV~S-~~~G--~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~ 437 (482)
T 1uqt_A 364 MNLVAKEYVAAQDPANPGVLVLS-QFAG--AANELT---SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVK 437 (482)
T ss_dssp CCHHHHHHHHHSCTTSCCEEEEE-TTBG--GGGTCT---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHhCCCCCCCCEEEE-CCCC--CHHHhC---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 4566899999998 699999 6321 123343 45778888887765533 22 3556566666666654455
Q ss_pred hhhchHHHHHHHHHHHHh
Q psy11113 410 YLATLQSQMDTLVAVVRD 427 (699)
Q Consensus 410 yfss~~~iv~TtL~iL~~ 427 (699)
| +.+..++..++.+++
T Consensus 438 ~--s~~~~a~~~l~~l~~ 453 (482)
T 1uqt_A 438 N--DINHWQECFISDLKQ 453 (482)
T ss_dssp T--CHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHh
Confidence 3 678888888888865
No 27
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=78.70 E-value=3.9 Score=48.48 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=58.1
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc------CCHHHHHHHHHhhHHHHHhh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS------ISDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s------is~e~i~~Mrrq~r~v~~~y 410 (699)
++.-++|||++|| |||.+ |.- ...++|.=....+.++..+..++.+.|.. -.++...+|.++++...+..
T Consensus 677 fglvllEAMA~G~-PVIas-d~G--G~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~ 752 (816)
T 3s28_A 677 FGLTVVEAMTCGL-PTFAT-CKG--GPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEK 752 (816)
T ss_dssp SCHHHHHHHHTTC-CEEEE-SSB--THHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHcCC-CEEEe-CCC--ChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 4567999999997 78888 642 23567766666788888888776665432 25677889999988766554
Q ss_pred hhchHHHHHHHHHHHH
Q psy11113 411 LATLQSQMDTLVAVVR 426 (699)
Q Consensus 411 fss~~~iv~TtL~iL~ 426 (699)
|+ .+.++..++++.+
T Consensus 753 fS-we~~a~~ll~lY~ 767 (816)
T 3s28_A 753 YT-WQIYSQRLLTLTG 767 (816)
T ss_dssp CC-HHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHH
Confidence 54 4556666665554
No 28
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=78.37 E-value=2.2 Score=47.74 Aligned_cols=104 Identities=18% Similarity=0.155 Sum_probs=71.2
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCC--CCccEEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCCCc---cccCCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNL--PYLNKVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTNDL---NNRFKPYDV 624 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~--p~l~kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~nSL---nnRF~P~~~ 624 (699)
..++||.||++.+.|.+.|+.+... +.--+|+||=|+....... ..+.. ..+|+++....+.. .+|-.=...
T Consensus 94 ~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~-~~~i~~i~~~~~~~g~~~a~N~g~~~ 172 (625)
T 2z86_A 94 GLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFES-LLNIKYVRQKDYGYQLCAVRNLGLRA 172 (625)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTT-TSCEEEEEECCCSCCHHHHHHHHHHH
T ss_pred cEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhh-cCCeEEEEeCCCCcchhHHHHHHHHh
Confidence 6899999999999999999999754 3466888887665332110 01111 24577776554321 111111223
Q ss_pred CCccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 625 IETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 625 I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
..++-|+.+|+|..++.+-|+-......++|+
T Consensus 173 a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~ 204 (625)
T 2z86_A 173 AKYNYVAILDCDMAPNPLWVQSYMELLAVDDN 204 (625)
T ss_dssp CCSSEEEEECTTEEECTTHHHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCCCCCHHHHHHHHHHHhcCCc
Confidence 57899999999999999999998888888775
No 29
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=72.70 E-value=11 Score=39.34 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=49.7
Q ss_pred hhHHHHHhcCceEEEEeCCCccCCcc---------cccCCcceEEeccCCCH--HHHHHHHhcC--CHHHHHHHHHhhHH
Q psy11113 339 MRLYEALKYGAVPVIVGGDNVMLPFE---------EVLDWNKILIPLPVARI--PELHLLLRSI--SDEDIVAFRHQGRQ 405 (699)
Q Consensus 339 ~Rl~eAL~~GCIPVIis~d~~~LPF~---------dvIDW~~fsV~ipe~~l--~~L~~iL~si--s~e~i~~Mrrq~r~ 405 (699)
.-+.|++.+|. |+|+- . +|+. ..+--..+++.++++++ .+|.+.|..+ .++.+.+|.++++.
T Consensus 263 ~Tv~E~~a~G~-P~Ili-p---~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~ 337 (365)
T 3s2u_A 263 LTVSELTAAGL-PAFLV-P---LPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARS 337 (365)
T ss_dssp HHHHHHHHHTC-CEEEC-C--------CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred chHHHHHHhCC-CeEEe-c---cCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHh
Confidence 34789999997 87764 1 3321 12345667889998875 3455444433 46788999999886
Q ss_pred HHHhhhhchHHHHHHHHHHHH
Q psy11113 406 VFTRYLATLQSQMDTLVAVVR 426 (699)
Q Consensus 406 v~~~yfss~~~iv~TtL~iL~ 426 (699)
+-.. ...+.|++.++++.|
T Consensus 338 ~~~~--~aa~~ia~~i~~lar 356 (365)
T 3s2u_A 338 LAKP--EATRTVVDACLEVAR 356 (365)
T ss_dssp TCCT--THHHHHHHHHHHHC-
T ss_pred cCCc--cHHHHHHHHHHHHHc
Confidence 5332 245667777776654
No 30
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=71.42 E-value=1.7 Score=44.25 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=38.6
Q ss_pred HHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHH
Q psy11113 341 LYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQ 405 (699)
Q Consensus 341 l~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~ 405 (699)
++|||++|+ |||.+ +..- ...++++-. ..+.++. +..+|.+.|..+ .++...+|.++++.
T Consensus 294 ~lEA~a~G~-Pvi~~-~~~~-~~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~ 355 (375)
T 3beo_A 294 QEEAPSLGV-PVLVL-RDTT-ERPEGIEAG-TLKLAGT-DEETIFSLADELLSDKEAHDKMSKASNP 355 (375)
T ss_dssp HHHHHHHTC-CEEEC-SSCC-SCHHHHHTT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHCCCCCT
T ss_pred HHHHHhcCC-CEEEe-cCCC-CCceeecCC-ceEEcCC-CHHHHHHHHHHHHhChHhHhhhhhcCCC
Confidence 789999997 89988 5421 135666554 6666765 766665544433 45667777776653
No 31
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=63.97 E-value=10 Score=26.42 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
|-.+||+|...+.|...||-+|+..
T Consensus 4 iaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555566555543
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.96 E-value=9 Score=35.84 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.1
Q ss_pred hhhhHH
Q psy11113 8 YVSKID 13 (699)
Q Consensus 8 ~~~~~e 13 (699)
+.+.++
T Consensus 80 L~~~l~ 85 (138)
T 3hnw_A 80 LSLDIE 85 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 33
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=62.80 E-value=22 Score=28.12 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=27.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
+|..+..++.+|...+.+.+.+...|+..|++|+. ||.+.|
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~---eA~RAN 45 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQAAKD---DAARAN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 46667777777777777777777777776665544 554433
No 34
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.45 E-value=9.5 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=27.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
|.++..+.++.+.|...+.++.++|.+|+.+|++
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888888888888888875
No 35
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=61.39 E-value=14 Score=25.78 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
.||..+.++|-.+|++|...+-|...||..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 588899999999999999999998888854
No 36
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=60.99 E-value=5.2 Score=41.44 Aligned_cols=86 Identities=9% Similarity=-0.103 Sum_probs=49.4
Q ss_pred hHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhch
Q psy11113 340 RLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATL 414 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~ 414 (699)
-++||+.+| +|||+.+.....+. .+.+.-....+.++.. +..+|.+.|+.+ .++...+|++.++.+-+.+ +.
T Consensus 320 t~~Ea~a~G-~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~--~~ 396 (412)
T 3otg_A 320 TTLGALGAG-VPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMP--GP 396 (412)
T ss_dssp HHHHHHHHT-CCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSC--CH
T ss_pred HHHHHHHhC-CCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCC--CH
Confidence 479999999 58888511111110 1233334567777765 555555544332 3556677777777665554 56
Q ss_pred HHHHHHHHHHHHhh
Q psy11113 415 QSQMDTLVAVVRDR 428 (699)
Q Consensus 415 ~~iv~TtL~iL~~R 428 (699)
+.+++.+.+.++++
T Consensus 397 ~~~~~~~~~l~~~~ 410 (412)
T 3otg_A 397 DEVVRLLPGFASRS 410 (412)
T ss_dssp HHHHTTHHHHHC--
T ss_pred HHHHHHHHHHhccc
Confidence 77777777766543
No 37
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.83 E-value=7.1 Score=40.09 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 13 DQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 13 e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.++++++..++.+.++|+..+.+|+.+++.+
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~L 87 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLAL 87 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 38
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.01 E-value=16 Score=31.44 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
.-++++.|...+.|+.+|++.||+.+..+.++.++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45566667777777777777777766666666543
No 39
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=59.36 E-value=1.8 Score=44.38 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=38.5
Q ss_pred HHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHH
Q psy11113 341 LYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQ 405 (699)
Q Consensus 341 l~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~ 405 (699)
++||+++|+ |||.+ +.. --..++++=. ..+.++. +..+|.+.+..+ .++...+|.++++.
T Consensus 294 ~lEA~a~G~-PvI~~-~~~-~~~~e~v~~g-~g~lv~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~ 355 (384)
T 1vgv_A 294 QEEAPSLGK-PVLVM-RDT-TERPEAVTAG-TVRLVGT-DKQRIVEEVTRLLKDENEYQAMSRAHNP 355 (384)
T ss_dssp GGTGGGGTC-CEEEE-SSC-CSCHHHHHHT-SEEEECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCT
T ss_pred HHHHHHcCC-CEEEc-cCC-CCcchhhhCC-ceEEeCC-CHHHHHHHHHHHHhChHHHhhhhhccCC
Confidence 689999997 99998 542 1234555444 6666765 666665544433 46667788877653
No 40
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=58.88 E-value=20 Score=30.72 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=30.4
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQ-----DKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~-----~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
|+.||+--+.-+..|.+++.++. +|...-+..++||+..++|++++
T Consensus 27 lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~ 77 (90)
T 4b6x_A 27 LRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRR 77 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 35566666666666677776665 44555566777888888877654
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.94 E-value=15 Score=34.30 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
.+.+++++++++..+..|+..||-++.+++..+.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e 106 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE 106 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 42
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.26 E-value=22 Score=30.50 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=35.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.||..++.+++++..+-.|+.-+|..-|.+|+..|.++.+
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5899999999999999999999999999988887765543
No 43
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=55.94 E-value=16 Score=37.22 Aligned_cols=79 Identities=23% Similarity=0.180 Sum_probs=44.3
Q ss_pred HHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhchHHHH
Q psy11113 341 LYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLATLQSQM 418 (699)
Q Consensus 341 l~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss~~~iv 418 (699)
++||+++|+ |||+. +.. --..++++- ...+.++ .+..+|.+.+..+ .++...+|.++.+ .| + ...+.
T Consensus 286 ~lEA~a~G~-PvI~~-~~~-~~~~~~~~~-g~g~lv~-~d~~~la~~i~~ll~d~~~~~~~~~~~~----~~-~-~~~~~ 354 (376)
T 1v4v_A 286 QEEGAALGV-PVVVL-RNV-TERPEGLKA-GILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAKN----PY-G-DGKAG 354 (376)
T ss_dssp HHHHHHTTC-CEEEC-SSS-CSCHHHHHH-TSEEECC-SCHHHHHHHHHHHHTCHHHHHHHHHSCC----SS-C-CSCHH
T ss_pred HHHHHHcCC-CEEec-cCC-CcchhhhcC-CceEECC-CCHHHHHHHHHHHHhChHhhhhhcccCC----CC-C-CChHH
Confidence 679999996 88876 432 112344442 3456665 3666665544332 4566777776442 22 2 23455
Q ss_pred HHHHHHHHhhcC
Q psy11113 419 DTLVAVVRDRLG 430 (699)
Q Consensus 419 ~TtL~iL~~R~~ 430 (699)
+.+++.+.+-+.
T Consensus 355 ~~i~~~i~~~~~ 366 (376)
T 1v4v_A 355 LMVARGVAWRLG 366 (376)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 666666666554
No 44
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=55.89 E-value=16 Score=39.80 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=46.2
Q ss_pred cchhhHHHHHhcCceEEEE-------eCCCc-------cCCcccccCCcceEEeccCCCHHHHHHHHhcC--CHHHHHHH
Q psy11113 336 GIQMRLYEALKYGAVPVIV-------GGDNV-------MLPFEEVLDWNKILIPLPVARIPELHLLLRSI--SDEDIVAF 399 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIi-------s~d~~-------~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~si--s~e~i~~M 399 (699)
+++.-++|||.+|| |||. + |.- -+ .++|. ++..++.+.+..+ .++...+|
T Consensus 464 ~~g~~~lEAma~G~-Pvv~~~g~~~~s-~~~~~~l~~~g~--~e~v~----------~~~~~la~~i~~l~~~~~~~~~~ 529 (568)
T 2vsy_A 464 NAHTTASDALWTGC-PVLTTPGETFAA-RVAGSLNHHLGL--DEMNV----------ADDAAFVAKAVALASDPAALTAL 529 (568)
T ss_dssp CCSHHHHHHHHTTC-CEEBCCCSSGGG-SHHHHHHHHHTC--GGGBC----------SSHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCcHHHHHHHhCCC-CEEeccCCCchH-HHHHHHHHHCCC--hhhhc----------CCHHHHHHHHHHHhcCHHHHHHH
Confidence 34667999999996 9999 5 432 22 23332 1455444433222 46667889
Q ss_pred HHhhHHHH--HhhhhchHHHHHHHHHHHHhh
Q psy11113 400 RHQGRQVF--TRYLATLQSQMDTLVAVVRDR 428 (699)
Q Consensus 400 rrq~r~v~--~~yfss~~~iv~TtL~iL~~R 428 (699)
+++++... +..|+ .+.++..++++++.-
T Consensus 530 ~~~~~~~~~~~~~f~-~~~~~~~~~~~y~~~ 559 (568)
T 2vsy_A 530 HARVDVLRRASGVFH-MDGFADDFGALLQAL 559 (568)
T ss_dssp HHHHHHHHHHSSTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCCC-HHHHHHHHHHHHHHH
Confidence 88888665 34443 455666666665543
No 45
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=52.85 E-value=6.8 Score=43.78 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=66.4
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCCcc-EEEEEecCCCCCCCC--CCCCCCCcCEEEEeCCCCCcc-ccCCCCCCCCc
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPYLN-KVVVVWNSVQPPRED--LRWPDIGVPVVVVRTNTNDLN-NRFKPYDVIET 627 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~l~-kIvVvWn~~~~pp~~--~~wp~~~vpV~vi~~~~nSLn-nRF~P~~~I~T 627 (699)
..|+||.||++...|.+.|+.+.+-.+-. +|+||=++....... ..+-.-...|+++..+...+. +|-.-...-..
T Consensus 376 ~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~~~n~G~~~a~n~g~~~a~g 455 (625)
T 2z86_A 376 LVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFISQKNKGIGSASNTAVRLCRG 455 (625)
T ss_dssp SEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEEECCCCHHHHHHHHHHHCCS
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEeCCCCCHHHHHHHHHHhcCC
Confidence 69999999999999999999997543333 676664443221100 001001124777763322110 00001112468
Q ss_pred cEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 628 EAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 628 eAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
|-|+.+|+|..+..+-|+-......++|+
T Consensus 456 ~~i~~ld~D~~~~~~~l~~~~~~~~~~~~ 484 (625)
T 2z86_A 456 FYIGQLDSDDFLEPDAVELCLDEFRKDLS 484 (625)
T ss_dssp SEEEECCTTCEECTTHHHHHHHHHHHCTT
T ss_pred CEEEEECCCcccChhHHHHHHHHHHhCCC
Confidence 99999999999999999998888888876
No 46
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.17 E-value=16 Score=39.80 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=37.6
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|..|+..++++.+++++++++.+.+++.++..+.+++...|.+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l 50 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 50 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999998888776664
No 47
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=51.93 E-value=15 Score=39.23 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=33.8
Q ss_pred hhhHHHHHhcCceEEEEeCCCccCCcccccCCcceEEeccCCCHHHHHHHHhc
Q psy11113 338 QMRLYEALKYGAVPVIVGGDNVMLPFEEVLDWNKILIPLPVARIPELHLLLRS 390 (699)
Q Consensus 338 s~Rl~eAL~~GCIPVIis~d~~~LPF~dvIDW~~fsV~ipe~~l~~L~~iL~s 390 (699)
+.-++|||++|| |||.+ +.- ..|+++=..-.+.++..+...|.+.|..
T Consensus 328 g~~~lEAmA~G~-PVV~~-~~g---~~e~v~~~~~G~lv~~~d~~~la~ai~~ 375 (413)
T 2x0d_A 328 SYPPLEMAHFGL-RVITN-KYE---NKDLSNWHSNIVSLEQLNPENIAETLVE 375 (413)
T ss_dssp CSHHHHHHHTTC-EEEEE-CBT---TBCGGGTBTTEEEESSCSHHHHHHHHHH
T ss_pred CcHHHHHHhCCC-cEEEe-CCC---cchhhhcCCCEEEeCCCCHHHHHHHHHH
Confidence 455799999998 66666 542 2467765667788888888877665443
No 48
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=51.68 E-value=3.1 Score=47.97 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred CeEEEEEeccCcHHHHHHHHHhcCCCC-ccEEEEEecCCCCCCCC--CCCCC-CCcCEEEEeCCCCC--ccccCCCCCCC
Q psy11113 552 QFTIIILTYERDQVLINSLSRLNNLPY-LNKVVVVWNSVQPPRED--LRWPD-IGVPVVVVRTNTND--LNNRFKPYDVI 625 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L~~~l~~l~~~p~-l~kIvVvWn~~~~pp~~--~~wp~-~~vpV~vi~~~~nS--LnnRF~P~~~I 625 (699)
.++|||-||++.+.|.+.|+.+.+-.+ --+||||=++....... ..+-. ....|+++..+.|. -.+|-.=....
T Consensus 3 ~vSVIIp~yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~~i~~i~~~~n~G~~~arN~gi~~A 82 (729)
T 3l7i_A 3 KLTIIVTYYNAEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNIRFIDLDENSGHAHARNIALEEV 82 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEcCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999999964322 23677776554221111 11111 13467777766551 12233334456
Q ss_pred CccEEEEecCCcccCHHHHHHHHHHHHhcCCCcccc
Q psy11113 626 ETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGF 661 (699)
Q Consensus 626 ~TeAVLslDDDi~l~~del~FaF~vWr~~PdRiVGF 661 (699)
..+-|+.+|+|..+..+-|+-...... .++=++|-
T Consensus 83 ~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~ 117 (729)
T 3l7i_A 83 ETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAP 117 (729)
T ss_dssp ------------------------------------
T ss_pred cCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEe
Confidence 889999999999999999998888776 55555553
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.54 E-value=28 Score=31.76 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.+++++++-+|.....+|..+..++++.+....++
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 34455555555555555555555555555444433
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.38 E-value=39 Score=27.30 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=25.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
++..+..+.++++++-.....+++.|+.++++.+-.+.|
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566666666666666666777777776666655544
No 51
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=48.62 E-value=25 Score=35.54 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=40.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQNS 48 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~~ 48 (699)
+..++.++++...+.+.+.+.+.|.+.+...++|-+.+..|++++..
T Consensus 170 a~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 170 AFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999999999999988654
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=48.56 E-value=27 Score=30.02 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=10.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQD 24 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~ 24 (699)
.|+.+++.+|++|.+-.....
T Consensus 21 tI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444333
No 53
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.46 E-value=39 Score=28.98 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=34.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..+..++++++++|.+..-.++.+.-+|++++..++|.-.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999998888743
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=47.82 E-value=29 Score=34.18 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=24.2
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
||.|+..++++.+...++|...|.+|+.+|.++...+
T Consensus 25 L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 25 LVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3556666667777777777777777777766664433
No 55
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=47.33 E-value=83 Score=36.85 Aligned_cols=138 Identities=10% Similarity=0.031 Sum_probs=69.8
Q ss_pred HHHHHHHhhhhcCCC-CCeEEEEe-cccCCCCCCCCcchhhhhcccceeeeeecCCccccccccccccCCCCcCCccccC
Q psy11113 238 SIEASSLTKYLTTST-SDLFHFDW-SCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRN 315 (699)
Q Consensus 238 ~~~~~~l~~~~~~~~-~d~~~~~~-~c~~~~~~c~~~~~~~~~l~~S~FcLi~p~~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (699)
+.+++.++.+.-.|. .|.|-+-+ .|--....+.-..++.++++.+..++ +|.-
T Consensus 473 D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV-~PS~------------------------ 527 (725)
T 3nb0_A 473 DLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGV-FPSY------------------------ 527 (725)
T ss_dssp CHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEE-CCCS------------------------
T ss_pred cHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEE-eccc------------------------
Confidence 345666665432333 35443322 34321111112246889999998887 5554
Q ss_pred CCCCccccchhhhhhccccccchhhHHHHHhcCceEEEEeCCCccCCcccc-cCCc------ceEEeccC---CC----H
Q psy11113 316 RHSDEETVEDDRAERYASTIGIQMRLYEALKYGAVPVIVGGDNVMLPFEEV-LDWN------KILIPLPV---AR----I 381 (699)
Q Consensus 316 ~~~d~~~~~~~~~~~~~~s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF~dv-IDW~------~fsV~ipe---~~----l 381 (699)
|| +++.-.+||+++|+ |||.+ |.-= |.+. .+.. ...+.|+. .+ +
T Consensus 528 ------------~E------gfGl~~LEAmA~G~-PvI~s-~~gG--~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~a 585 (725)
T 3nb0_A 528 ------------YE------PWGYTPAECTVMGV-PSITT-NVSG--FGSYMEDLIETNQAKDYGIYIVDRRFKAPDESV 585 (725)
T ss_dssp ------------SB------SSCHHHHHHHHTTC-CEEEE-TTBH--HHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHH
T ss_pred ------------cC------CCCHHHHHHHHcCC-CEEEe-CCCC--hhhhhhccccccCCCCceEEEeCCCCCCHHHHH
Confidence 11 35677899999997 55666 5321 1122 2221 12333322 22 3
Q ss_pred HHHHHHHh---cCCHHHHHHHHHhhHHH-----HHhhhhchHHHHHHHH
Q psy11113 382 PELHLLLR---SISDEDIVAFRHQGRQV-----FTRYLATLQSQMDTLV 422 (699)
Q Consensus 382 ~~L~~iL~---sis~e~i~~Mrrq~r~v-----~~~yfss~~~iv~TtL 422 (699)
..|...|. ..++++..+|+++++.+ |++......++.+.+|
T Consensus 586 eaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL 634 (725)
T 3nb0_A 586 EQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLAL 634 (725)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34544443 34677788888877543 4443333334444443
No 56
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.26 E-value=25 Score=37.29 Aligned_cols=45 Identities=7% Similarity=-0.060 Sum_probs=27.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+.||..+...+.....+|..++..|+.++..|++.+..+.++..+
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655555556666666666666666677666666666543
No 57
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=46.95 E-value=17 Score=40.51 Aligned_cols=85 Identities=8% Similarity=0.116 Sum_probs=46.9
Q ss_pred chhhHHHHHhcCceEEEEeCCCccCCccccc-CC-cce--------EEeccCCCHHHHH----HHHhcCCHHHHHHHHHh
Q psy11113 337 IQMRLYEALKYGAVPVIVGGDNVMLPFEEVL-DW-NKI--------LIPLPVARIPELH----LLLRSISDEDIVAFRHQ 402 (699)
Q Consensus 337 ~s~Rl~eAL~~GCIPVIis~d~~~LPF~dvI-DW-~~f--------sV~ipe~~l~~L~----~iL~sis~e~i~~Mrrq 402 (699)
+..-++|||++||.+ |.+ |.--+| |+| |- +-| .+.++..+...|. ..|....++.+.+|+++
T Consensus 414 fgl~~lEAma~G~Pv-I~s-~~gG~~--e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~~~~~~~~~~~ 489 (536)
T 3vue_A 414 CGLIQLQGMRYGTPC-ACA-STGGLV--DTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRN 489 (536)
T ss_dssp SCSHHHHHHHTTCCE-EEC-SCTHHH--HHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCE-EEc-CCCCch--heeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 456789999999855 455 422222 332 21 111 2234444554444 34444566778888877
Q ss_pred hHHHHHhhhhchHHHHHHHHHHHHhhcC
Q psy11113 403 GRQVFTRYLATLQSQMDTLVAVVRDRLG 430 (699)
Q Consensus 403 ~r~v~~~yfss~~~iv~TtL~iL~~R~~ 430 (699)
+. ++-| |-++++...+++.+. |+
T Consensus 490 am---~~~f-SW~~~A~~y~~ly~~-L~ 512 (536)
T 3vue_A 490 CM---NQDL-SWKGPAKNWENVLLG-LG 512 (536)
T ss_dssp HH---HSCC-SSHHHHHHHHHHHHT-TC
T ss_pred HH---HhcC-CHHHHHHHHHHHHHH-hh
Confidence 64 2334 345677777777765 54
No 58
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=46.53 E-value=36 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=34.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHY----QDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~----~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
|+.-+.+=+.|||+.++|.-- +.-.+|||..|..|+...||-+.
T Consensus 14 qsKY~~LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl~ 61 (69)
T 2m1l_A 14 QSTYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLA 61 (69)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 455566777888888888665 46778999999999999999753
No 59
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.96 E-value=28 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.104 Sum_probs=20.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
.+|+.|+.|+++|+.++...+.+....|.+-+.|
T Consensus 11 s~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 11 SDAQTANAKADQASNDANAARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666555544433
No 60
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.88 E-value=46 Score=26.04 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=27.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.+.....+....+.++..++.+++++...|++++-.+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566667777777777777777777777777766
No 61
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=45.86 E-value=39 Score=30.53 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=36.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
-+..+..+++.++..+...+.+++.++..|.+.+..++|++.+
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567888999999999999999999999999999888888653
No 62
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=45.66 E-value=25 Score=26.79 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
++.++.++|++++.|.....||+.|..++++
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999988764
No 63
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=45.62 E-value=30 Score=28.47 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=32.7
Q ss_pred hhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 6 NSYVSKIDQIKQDILHY----QDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~----~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+.+=+.|||+.++|.-- +.-.+|||..|.+|+...+|-+.
T Consensus 14 ~~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl~ 57 (65)
T 2kw6_A 14 AELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLA 57 (65)
T ss_dssp HHHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 45667889998888765 46789999999999999999753
No 64
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=45.58 E-value=8.5 Score=41.37 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCeEEEEEeccCcHHHHHHHHHhcC----CCCccEEEEEecCCCCCCCCCCCCCCCcCEEEEe-------CCCC-----C
Q psy11113 551 EQFTIIILTYERDQVLINSLSRLNN----LPYLNKVVVVWNSVQPPREDLRWPDIGVPVVVVR-------TNTN-----D 614 (699)
Q Consensus 551 ~~FT~vI~ty~R~~~L~~~l~~l~~----~p~l~kIvVvWn~~~~pp~~~~wp~~~vpV~vi~-------~~~n-----S 614 (699)
-+.+|||-+|+..+.|.+.|+.+.+ .+..-+||||=++........ .-...+ +++. .+.| .
T Consensus 94 p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i-~~~~~~--~v~~~~~~~i~~~~n~G~g~A 170 (387)
T 3f1y_A 94 LTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGV-AASHGA--EVYSENELMSGYGDAHGKGDA 170 (387)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHH-HHHTTC--EEEEGGGTTGGGCSCCSHHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHH-HHHhCc--hhcccceeEecCCccCCHHHH
Confidence 3699999999998888888887753 455679999987653221100 001111 2222 2222 1
Q ss_pred ccccCCCCCCCCccEEEEecCCcc-cCHHHHHHHHHHHHhcC--CCccccCCc
Q psy11113 615 LNNRFKPYDVIETEAVLNMDDDVY-LRHDEIMFAFRVWREQR--DRIVGFPGR 664 (699)
Q Consensus 615 LnnRF~P~~~I~TeAVLslDDDi~-l~~del~FaF~vWr~~P--dRiVGF~~R 664 (699)
+|.= ......|.|+.+|.|.. +..+.|.-......+.| +=++|.+.|
T Consensus 171 ~n~G---~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~ 220 (387)
T 3f1y_A 171 MWRA---LSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRR 220 (387)
T ss_dssp HHHH---TTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEEC
T ss_pred HHHH---HHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeecc
Confidence 1211 23357899999999998 89999999888888775 445565544
No 65
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=43.87 E-value=33 Score=34.99 Aligned_cols=86 Identities=13% Similarity=0.071 Sum_probs=47.9
Q ss_pred hHHHHHhcCceEEEEeCC-CccCCcc-cccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhhhc
Q psy11113 340 RLYEALKYGAVPVIVGGD-NVMLPFE-EVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYLAT 413 (699)
Q Consensus 340 Rl~eAL~~GCIPVIis~d-~~~LPF~-dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yfss 413 (699)
-+.||+.+| +|+|+-+. ....++. +.+....+.+.++.. +..+|.+.++.+ .++...+|++..+.+-+. .+
T Consensus 309 t~~Ea~~~G-~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~--~~ 385 (402)
T 3ia7_A 309 AVLEAFAAG-VPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSS--GG 385 (402)
T ss_dssp HHHHHHHTT-CCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTS--CH
T ss_pred HHHHHHHhC-CCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhC--Ch
Confidence 368999999 58876522 1111111 234456677888765 444555444332 244455565555544332 24
Q ss_pred hHHHHHHHHHHHHhh
Q psy11113 414 LQSQMDTLVAVVRDR 428 (699)
Q Consensus 414 ~~~iv~TtL~iL~~R 428 (699)
.+.+++.+.+.++.+
T Consensus 386 ~~~~~~~i~~~~~~~ 400 (402)
T 3ia7_A 386 PARAADEVEAYLGRV 400 (402)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 567777777777654
No 66
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.63 E-value=23 Score=27.88 Aligned_cols=29 Identities=7% Similarity=0.255 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
..+|.|++++...+.+.+.|+.+++..+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777666666666666666666554
No 67
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.39 E-value=27 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
+++|++++...+.+-..|+.+|++.+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 68
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.38 E-value=56 Score=27.87 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=25.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDK-------------LDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~-------------l~~l~~~i~~a~~~~~e~~~ 45 (699)
|+|+..+-.+|+.+.++|...+.+ +..|-..+++++..+.++.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666555543 34555566666666655544
No 69
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.19 E-value=38 Score=24.74 Aligned_cols=31 Identities=19% Similarity=0.473 Sum_probs=26.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
.+++..|+|++.+.-.+.++|..|||.-+.+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999876654
No 70
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=42.84 E-value=13 Score=38.78 Aligned_cols=88 Identities=14% Similarity=-0.015 Sum_probs=48.1
Q ss_pred cchhhHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhh
Q psy11113 336 GIQMRLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQVFTRY 410 (699)
Q Consensus 336 ~~s~Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~y 410 (699)
++..-++||+.+| +|||+.+.....++ .+.+......+.++.. +..+|.+.|+.+ .++...+|++.++.+-+.+
T Consensus 307 ~G~~t~~Ea~~~G-~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 385 (430)
T 2iyf_A 307 AGAGGSQEGLATA-TPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEG 385 (430)
T ss_dssp CCHHHHHHHHHTT-CCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHhC-CCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 3445689999998 68887622111111 1223334567778765 445565544433 3454566666666554432
Q ss_pred hhchHHHHHHHHHHHH
Q psy11113 411 LATLQSQMDTLVAVVR 426 (699)
Q Consensus 411 fss~~~iv~TtL~iL~ 426 (699)
+.+.+++.+.+.++
T Consensus 386 --~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 386 --GTRRAADLIEAELP 399 (430)
T ss_dssp --HHHHHHHHHHTTSC
T ss_pred --cHHHHHHHHHHHhh
Confidence 45566665555443
No 71
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.46 E-value=48 Score=28.94 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=34.9
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
|+.++...-.+...+++++.....++..++.++..++.++.|+.
T Consensus 4 ~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 4 IPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777788888888888888888888888888888883
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.32 E-value=30 Score=38.35 Aligned_cols=43 Identities=7% Similarity=0.031 Sum_probs=29.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+...++++.+++++.+..++.++.+++.+++++..+++++.+.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445666677777777777777777777777777777554
No 73
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.94 E-value=31 Score=30.70 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=15.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISIN 34 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~ 34 (699)
++..++++|++|..+-.+...+.+.|++.|+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554443
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.32 E-value=44 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=15.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISIN 34 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~ 34 (699)
++..++...+++|+.+...+.+++.|+..++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555555444
No 75
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=39.98 E-value=11 Score=40.21 Aligned_cols=105 Identities=14% Similarity=0.219 Sum_probs=61.1
Q ss_pred EEEEEeccCcHHHHHHHHHhcCC-CCcc-EEEEEecCCCCCCCCCCCCCCCcCEEEEeCCC---------C---------
Q psy11113 554 TIIILTYERDQVLINSLSRLNNL-PYLN-KVVVVWNSVQPPREDLRWPDIGVPVVVVRTNT---------N--------- 613 (699)
Q Consensus 554 T~vI~ty~R~~~L~~~l~~l~~~-p~l~-kIvVvWn~~~~pp~~~~wp~~~vpV~vi~~~~---------n--------- 613 (699)
.+||.||+|.+ |.+.|+.|.+. |... .-+||=.+.........--.++.+|..+..+. |
T Consensus 5 pViI~~yNRp~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~~i 83 (343)
T 1fo8_A 5 PILVIACDRST-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYYKI 83 (343)
T ss_dssp CEEEEESSCTT-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHHHH
T ss_pred cEEEEECCcHH-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccchhH
Confidence 58999999999 99999999764 3332 23444433321110000001223444432221 1
Q ss_pred ------CccccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHH--hcCCCccccC
Q psy11113 614 ------DLNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWR--EQRDRIVGFP 662 (699)
Q Consensus 614 ------SLnnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr--~~PdRiVGF~ 662 (699)
.||.-| ....-+.|+.||||..++++=++|--+... +..++|.+..
T Consensus 84 a~h~~~al~~vf---~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~IS 137 (343)
T 1fo8_A 84 ARHYRWALGQIF---HNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVS 137 (343)
T ss_dssp HHHHHHHHHHHH---TTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEE
T ss_pred hHHHHHHHHHHH---HhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 111112 123578999999999999999998877775 5566776553
No 76
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=39.86 E-value=51 Score=29.95 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=31.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
|+|.-.+-++.-..++|+...+.++..|+..++.++.+++|+.+.+
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~ 48 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGREN 48 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555556666666777777777777777777777777777765443
No 77
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.58 E-value=47 Score=25.01 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=33.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
..|++++....|-+|+.-.|+++-..-|+.+|+..+..++|
T Consensus 9 enevaslenenetlkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 9 ENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 35788888888999999999998888999999888876654
No 78
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=39.36 E-value=47 Score=30.02 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=31.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
.||.-++.+...++..+..+|.+.+.||..|++.+.++
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888899999999999999998888855543
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.02 E-value=27 Score=37.85 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=23.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.||..++++.++++++|.+++.+++.++..+.+.+...|.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~ 49 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666655555544433
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.64 E-value=32 Score=27.41 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISIN 34 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~ 34 (699)
+..+++.++.+-...+.++..|+.++.
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443333444444433333
No 81
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.33 E-value=66 Score=29.02 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=25.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.+|+.++.+++++.++-.+.+.+++.++..++.-+.-+.+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4666777777777777666666666666666665554443
No 82
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=37.80 E-value=13 Score=38.35 Aligned_cols=112 Identities=8% Similarity=0.103 Sum_probs=66.4
Q ss_pred CCeEEEEEeccCcHHHHHHHHHhcCC--CCccEEEEEecCCCCCCCCCCCCCCCcCE----EEEe-CCCCC--ccccCCC
Q psy11113 551 EQFTIIILTYERDQVLINSLSRLNNL--PYLNKVVVVWNSVQPPREDLRWPDIGVPV----VVVR-TNTND--LNNRFKP 621 (699)
Q Consensus 551 ~~FT~vI~ty~R~~~L~~~l~~l~~~--p~l~kIvVvWn~~~~pp~~~~wp~~~vpV----~vi~-~~~nS--LnnRF~P 621 (699)
-..+|||-+|+..+.|.+.|+.+.+. +..-+|+||=++........ .-.....+ +++. .+.|. -.++-.=
T Consensus 48 ~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~-~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g 126 (329)
T 3ckj_A 48 RTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIR-AVAAGARVVSREQALPEVPIRPGKGEALWRS 126 (329)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHH-HHHTTCEEEEHHHHCTTSCCCCSHHHHHHHH
T ss_pred CcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHH-HHHhhhhhccceeeeccCCCCCCHHHHHHHH
Confidence 46999999999999999999999754 44468888755432211000 00011111 1111 22221 0000001
Q ss_pred CCCCCccEEEEecCCcc-cCHHHHHHHHHHHHhcCC--CccccCC
Q psy11113 622 YDVIETEAVLNMDDDVY-LRHDEIMFAFRVWREQRD--RIVGFPG 663 (699)
Q Consensus 622 ~~~I~TeAVLslDDDi~-l~~del~FaF~vWr~~Pd--RiVGF~~ 663 (699)
......|.|+.+|+|.. +..+.|+-......++|+ =++|...
T Consensus 127 ~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~ 171 (329)
T 3ckj_A 127 LAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYR 171 (329)
T ss_dssp HHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEE
T ss_pred HHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEec
Confidence 12246899999999998 899999988887777764 2445433
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.28 E-value=39 Score=36.67 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=21.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
+|..+..+++++++++.+.+.++++++.++++++..++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666655544433
No 84
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.03 E-value=75 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=24.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
....+..+++-|...+.+|++++-.+..|+..+.|+-
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666777777777777777776663
No 85
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=36.90 E-value=59 Score=27.85 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=28.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
||..++.+++.+..+-.+.+.+++.++..++.-+.-+.+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888887777777777777777765554443
No 86
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.58 E-value=53 Score=24.88 Aligned_cols=32 Identities=6% Similarity=0.155 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 13 DQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 13 e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
|+|-|.|.+...|.++.+..|+..|.-++|+-
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777776666666653
No 87
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=36.08 E-value=45 Score=34.15 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=46.0
Q ss_pred hhHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccC----CCHHHHHHHHhcC--CHHHHHHHHHhhHHHHHhhh
Q psy11113 339 MRLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPV----ARIPELHLLLRSI--SDEDIVAFRHQGRQVFTRYL 411 (699)
Q Consensus 339 ~Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe----~~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~~yf 411 (699)
.-+.||+.+| +|||+-+.....+. .+.+....+.+.++. .+...|.+.++.+ .++...+|++..+.+-+.
T Consensus 297 ~t~~Ea~~~G-~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~-- 373 (391)
T 3tsa_A 297 GTAFTATRLG-IPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAM-- 373 (391)
T ss_dssp HHHHHHHHTT-CCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHhC-CCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC--
Confidence 4479999998 68877422111111 123455667788876 3444444433322 244556677666655333
Q ss_pred hchHHHHHHHHHHHHhh
Q psy11113 412 ATLQSQMDTLVAVVRDR 428 (699)
Q Consensus 412 ss~~~iv~TtL~iL~~R 428 (699)
.+.+.+++.+.+.++.|
T Consensus 374 ~~~~~~~~~i~~~~~~~ 390 (391)
T 3tsa_A 374 PHPAALVRTLENTAAIR 390 (391)
T ss_dssp CCHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 23466777766665544
No 88
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.84 E-value=68 Score=27.95 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.4
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|..++..+..++++++.++...+.+...++..|++.+..+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 1 MKKLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888888888888888888888888888888777
No 89
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.60 E-value=49 Score=24.18 Aligned_cols=31 Identities=10% Similarity=0.428 Sum_probs=26.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
.+++..|+|++.++-.+.++|..|||.-+..
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999876654
No 90
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=35.36 E-value=61 Score=33.48 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCccc
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ-NSPQLYPPLM 56 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~-~~~~~~~P~~ 56 (699)
.+++.+.++..++.+++.++.+|++|+.+++++..+ ..-.+..|.-
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~ 162 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPID 162 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCC
Confidence 455666677777777778888888888777776443 2344677763
No 91
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=34.52 E-value=28 Score=32.39 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHY---QDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~---~~~l~~l~~~i~~a~~~~~e 42 (699)
++++++++++|+++... +.+++.|+.+|++.+.++++
T Consensus 2 ~~l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 2 STLNAQIPELKSDLEKASALNTKIRALQGSLENMSKLLKR 41 (182)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555443 45666666666655554443
No 92
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=34.36 E-value=73 Score=27.77 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=37.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+..+..+++.++.+|.....+++.++..+++.+..+++....
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 466788999999999999999999999999999999998754
No 93
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.95 E-value=8.4 Score=28.28 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLA 39 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~ 39 (699)
.++.+|+-|..++.+++.++-++++++..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777777666653
No 94
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=33.64 E-value=63 Score=30.78 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=22.1
Q ss_pred hhhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQD-------ILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~-------i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+.|++.++.++..++.+ +...++|+..|.++.+.++...+.+
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666533 3344455555555555555444443
No 95
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=33.62 E-value=57 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKI 31 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~ 31 (699)
+++..|+|++.+...+.++|..||+.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56778999999999999999999875
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.46 E-value=39 Score=28.57 Aligned_cols=42 Identities=2% Similarity=-0.094 Sum_probs=30.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++-+..-+|+|.+.+.+.|.++++|+..+......++++
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777788888888888888888888887776666555
No 97
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.41 E-value=78 Score=28.92 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 19 ILHYQDKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 19 i~~~~~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
++..+.|+..|+-.++.|..+.+++++.|
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555555555555555555554444
No 98
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.39 E-value=65 Score=27.99 Aligned_cols=36 Identities=3% Similarity=0.189 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|...|++++++|.....+-.+|+++|...+....+.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~ 89 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544443
No 99
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.22 E-value=99 Score=23.75 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILH-YQDKLDKLKISINQAQL 38 (699)
Q Consensus 10 ~~~e~~~~~i~~-~~~~l~~l~~~i~~a~~ 38 (699)
...|.+||+|.+ ...||.++|.+|-.|-.
T Consensus 7 ~dle~~KqEIL~E~RkElqK~K~EIIeAi~ 36 (45)
T 1use_A 7 SDLQRVKQELLEEVKKELQKVKEEIIEAFV 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888765 45788888887766643
No 100
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.97 E-value=64 Score=32.50 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.9
Q ss_pred ccccCCC
Q psy11113 81 DFSRCSL 87 (699)
Q Consensus 81 D~sRC~~ 87 (699)
+.-+|..
T Consensus 221 ~Iv~Cp~ 227 (256)
T 3na7_A 221 DMITCPY 227 (256)
T ss_dssp SCEECTT
T ss_pred CEEECCC
Confidence 4556664
No 101
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=31.93 E-value=72 Score=29.57 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=37.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
-+..+..+++.++..+...+..++.++..|...+..++++..+
T Consensus 99 A~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 99 AISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999988764
No 102
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=31.60 E-value=55 Score=35.68 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=55.3
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCccc-cc-CCcceEEeccCC---CH--HHHHHHHhcC-CHHHHHHHHHhhHH
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPFEE-VL-DWNKILIPLPVA---RI--PELHLLLRSI-SDEDIVAFRHQGRQ 405 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF~d-vI-DW~~fsV~ipe~---~l--~~L~~iL~si-s~e~i~~Mrrq~r~ 405 (699)
|.++...+.|||.+| ||+|+-+-..+.++.- .+ ++-.+.+.+... .+ .+|.+.++.+ .+++-.+||++++.
T Consensus 363 tHgG~~S~~Eal~~G-vP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~~~~~~~r~~a~~ 441 (480)
T 2vch_A 363 THCGWNSTLESVVSG-IPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKE 441 (480)
T ss_dssp ECCCHHHHHHHHHHT-CCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred ecccchhHHHHHHcC-CCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 556667899999999 6887763433444433 23 677888888764 33 4565555443 32334577887776
Q ss_pred HHHhhhh------chHHHHHHHHHHHHh
Q psy11113 406 VFTRYLA------TLQSQMDTLVAVVRD 427 (699)
Q Consensus 406 v~~~yfs------s~~~iv~TtL~iL~~ 427 (699)
+-+..-. +..+.++..++.|+.
T Consensus 442 l~~~~~~a~~~gGss~~~~~~~v~~~~~ 469 (480)
T 2vch_A 442 LKEAACRVLKDDGTSTKALSLVALKWKA 469 (480)
T ss_dssp HHHHHHHHTSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6554322 234555566665543
No 103
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=31.27 E-value=88 Score=27.43 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=13.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQA 36 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a 36 (699)
||.+++.++-.++.++.+++..|...+..++.+
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333
No 104
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.98 E-value=1.1e+02 Score=26.12 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=12.7
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQD 24 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~ 24 (699)
||+||.-+..+...+.++...++.
T Consensus 25 LqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 25 LQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555555333
No 105
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=30.54 E-value=35 Score=36.08 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=25.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
-.||.+|..+|-..+.+|...+..|+.++..|++.+..+.++..
T Consensus 3 ~~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~ 46 (319)
T 1fzc_C 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 46 (319)
T ss_dssp -------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777766655555544
No 106
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=30.52 E-value=17 Score=42.66 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=66.1
Q ss_pred CeEEEEEeccCcHHH-HHHHHHhcCCCCcc---EEEEEecCCCCCCCCC-----------CCCC-----CCcCEEEEeCC
Q psy11113 552 QFTIIILTYERDQVL-INSLSRLNNLPYLN---KVVVVWNSVQPPREDL-----------RWPD-----IGVPVVVVRTN 611 (699)
Q Consensus 552 ~FT~vI~ty~R~~~L-~~~l~~l~~~p~l~---kIvVvWn~~~~pp~~~-----------~wp~-----~~vpV~vi~~~ 611 (699)
+.+++|-+|+....+ .+.|+.+.+..+-+ +|+||=++......+. ..+. -..+++++..+
T Consensus 141 ~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v~~i~~~ 220 (802)
T 4hg6_A 141 TVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGVVYSTRE 220 (802)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEECS
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCcEEEEec
Confidence 689999999987655 88999997765543 6888755432111000 0000 01245555544
Q ss_pred CCC---ccccCCCCCCCCccEEEEecCCcccCHHHHHHHHHHHHhcCC
Q psy11113 612 TND---LNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRD 656 (699)
Q Consensus 612 ~nS---LnnRF~P~~~I~TeAVLslDDDi~l~~del~FaF~vWr~~Pd 656 (699)
+|. -.++-.=....+.|-|+.+|+|..+..+-|+-......++|+
T Consensus 221 ~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~ 268 (802)
T 4hg6_A 221 RNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPD 268 (802)
T ss_dssp SCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSS
T ss_pred CCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCC
Confidence 431 111111123457899999999999999999999888877775
No 107
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.50 E-value=93 Score=27.52 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=30.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.+...++.++.+++.+......|+.+|...++..+....++
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~a 45 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA 45 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888888887776666555444
No 108
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.48 E-value=98 Score=26.99 Aligned_cols=22 Identities=9% Similarity=0.356 Sum_probs=8.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLD 27 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~ 27 (699)
..++.++..++.++..++..|.
T Consensus 47 ~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 47 QGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 109
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.42 E-value=43 Score=22.61 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=8.0
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q psy11113 7 SYVSKIDQIKQDILHYQDK 25 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~~~ 25 (699)
.+.+|.-.+||+|.....|
T Consensus 4 rlkqknarlkqeiaaleye 22 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3444444444444443333
No 110
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.41 E-value=52 Score=30.53 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=35.1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy11113 1 MVMEINSYVSKIDQIKQDILHYQDKLDKL---KISINQAQLAHTES 43 (699)
Q Consensus 1 ~q~~i~~~~~~~e~~~~~i~~~~~~l~~l---~~~i~~a~~~~~e~ 43 (699)
|+.++..+...+..+++++.+.+..+.+| +..|...+.++.++
T Consensus 7 ~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l 52 (151)
T 2zdi_C 7 NNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENL 52 (151)
T ss_dssp STTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888 88888888777775
No 111
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=30.30 E-value=47 Score=35.02 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=51.1
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHHHH
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQVFT 408 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~ 408 (699)
+.++..-+.||+.+| +|+|+.+-..+.++ .+.+....+.+.++.+ +..+|.+.|+.+ .++...+|++..+.+-+
T Consensus 341 ~~~G~~t~~Ea~~~G-~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 419 (441)
T 2yjn_A 341 HHGGPGSWHTAAIHG-VPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLA 419 (441)
T ss_dssp ECCCHHHHHHHHHTT-CCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred ECCCHHHHHHHHHhC-CCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHc
Confidence 445556799999998 68777622111111 1234455677888766 334555544443 24444555555554432
Q ss_pred hhhhchHHHHHHHHHHHHh
Q psy11113 409 RYLATLQSQMDTLVAVVRD 427 (699)
Q Consensus 409 ~yfss~~~iv~TtL~iL~~ 427 (699)
-.+.+.+++.+.+.+++
T Consensus 420 --~~~~~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 420 --EPSPAEVVGICEELAAG 436 (441)
T ss_dssp --SCCHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHh
Confidence 23456777777776654
No 112
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.09 E-value=71 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISI 33 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i 33 (699)
+++..|.|++-++-.+.++|+.|||.=+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5677899999999999999999998644
No 113
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.90 E-value=99 Score=27.87 Aligned_cols=41 Identities=2% Similarity=0.165 Sum_probs=32.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+.|.+.|++++++|.....+-.+|.++|..++.+..+...+
T Consensus 16 ~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~K 56 (119)
T 3ol1_A 16 DLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888888888888888888888777554
No 114
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.49 E-value=64 Score=23.33 Aligned_cols=27 Identities=11% Similarity=0.413 Sum_probs=23.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKI 31 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~ 31 (699)
.+++-.|.|++-++..+.++|+.||+.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456778999999999999999999875
No 115
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.33 E-value=63 Score=26.77 Aligned_cols=31 Identities=6% Similarity=0.230 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 13 DQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 13 e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|++...|..++.....|+..++++...++|+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eL 44 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQEL 44 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555544444
No 116
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.31 E-value=1e+02 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 7 SYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
-|+.|+++++++..+.-.+|...|.+|...+..+
T Consensus 32 ~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~i 65 (77)
T 3trt_A 32 WYKSKFADLSEAANRNNDALRQAKQESTEYRRQV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3677788888777776666666666665555443
No 117
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=29.01 E-value=97 Score=27.84 Aligned_cols=40 Identities=8% Similarity=0.277 Sum_probs=33.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
++..+...+..+++++.+.+..+++|+..|...+.++..+
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l 41 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTL 41 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888899999999988888888888777776655
No 118
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.94 E-value=77 Score=31.88 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=15.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++..++.++.++...+.++.+++..|++++..++..
T Consensus 41 ~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~ 79 (256)
T 3na7_A 41 KEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444433333
No 119
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=28.85 E-value=1.6e+02 Score=22.77 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
.++..+...+++++..+.....+++.++.++.++...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~ 46 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIR 46 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777777766665543
No 120
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.70 E-value=83 Score=33.31 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=30.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..++++..++++++..|.....++..|+..|++.+..+.++
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777777666665
No 121
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.51 E-value=80 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11113 26 LDKLKISINQAQLAHTE 42 (699)
Q Consensus 26 l~~l~~~i~~a~~~~~e 42 (699)
++.|+..|++-...++|
T Consensus 42 I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 42 IDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 122
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.19 E-value=1.6e+02 Score=22.65 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+..+++.++..+...|+++.||-++-+.+|..++.-
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998888876643
No 123
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.18 E-value=88 Score=25.98 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=26.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.|..+..++++++........|-+.|+..|+..+.+..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777766666677777777777777665544
No 124
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.06 E-value=65 Score=35.66 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 7 SYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
...+.+++.++++.+.+.|.++++..++..+..+.|+.+.
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 3334444444444555566666666666666666666544
No 125
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.02 E-value=1.3e+02 Score=25.87 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 16 KQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 16 ~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
..+|.+-+.++++|+-.|+..+..++++-
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777888888888888888777763
No 126
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=27.93 E-value=1.3e+02 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
-.+.|..++++.+.|.++++|+..+.+.+...+...
T Consensus 4 ~~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 4 LSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356788999999999999999999888876655543
No 127
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.92 E-value=76 Score=22.96 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
+++..|.|++-++-.+.++|+.|||.=
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567789999999999999999999853
No 128
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.86 E-value=98 Score=27.99 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=27.7
Q ss_pred hhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 3 MEINSYVSKIDQIKQD----ILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~----i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
.|+..++.|+++.+++ +...|.+|..|+..-++.+..+||+=.
T Consensus 17 ~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 17 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666653 555667777777777777777776633
No 129
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=27.57 E-value=96 Score=28.32 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+++.++|++|.++..+.+|||---.+.-.+.||++-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999975
No 130
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.54 E-value=83 Score=22.72 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=24.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISI 33 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i 33 (699)
.+++..|.|++-++-.+.++|..|||.=+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35677899999999999999999998643
No 131
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.27 E-value=1.1e+02 Score=24.49 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
+=+++-++...++|..+++..++.-|.|.+++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~L 43 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDL 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33567777777778888888887766666654
No 132
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=26.85 E-value=1.3e+02 Score=25.22 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.+.+++..+|...+.++..|+.+++.++-.+.++
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444555555544444444
No 133
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.76 E-value=1.5e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
+..+..+++.++.+-...+.+++.|+.++++..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554443
No 134
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.48 E-value=76 Score=25.55 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
++++++++++.....+-+.|+..|++.+.++.-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~ 55 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQY 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777776665443
No 135
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=26.14 E-value=1e+02 Score=27.42 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 7 SYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 7 ~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
....++|+++++|.....||..|+..++..+.
T Consensus 51 eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 51 EQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777776665554
No 136
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=26.09 E-value=94 Score=30.57 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=23.2
Q ss_pred hhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQD----ILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~----i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.|+..++.|+++.+++ +..+|.++..|+...++.+..++++
T Consensus 70 ~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 70 YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555 5555566666666666666666655
No 137
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.06 E-value=1.4e+02 Score=25.34 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 9 VSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 9 ~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
....+.++..|.+...+|.+++.++++--..+.+++.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555544444555443
No 138
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.99 E-value=1.1e+02 Score=27.99 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=7.8
Q ss_pred hhhhhhhhhhHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQD 18 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~ 18 (699)
+.||..++..+|.++.+
T Consensus 21 kreie~lk~ele~l~~E 37 (120)
T 3i00_A 21 YREISGLKAQLENMKTE 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455444444433
No 139
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=25.98 E-value=1.3e+02 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=30.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+.+++.=+..+.+.|.+.+.+|..++..+++++....|+..
T Consensus 69 l~~~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~ 109 (150)
T 3ajw_A 69 WINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQ 109 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777777778888888888888888777777654
No 140
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.72 E-value=59 Score=29.24 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=9.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQ 23 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~ 23 (699)
|.|++..+.+++++++++...+
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 141
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.54 E-value=83 Score=22.63 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=22.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
+++..|.|++-++-...++|..|||.=
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567788999999999999999998853
No 142
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.42 E-value=1.5e+02 Score=25.75 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=22.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
.+|..++.+++++..+-.+.+.+++.|...++..+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666665544
No 143
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=25.37 E-value=64 Score=33.58 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=46.5
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHHHH
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQVFT 408 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~ 408 (699)
+.++..-+.||+.+| +|+|+.+-....++ ...+....+.+.++.+ +..+|.+.|+.+ .++...+|++..+.+-+
T Consensus 327 ~~~G~~t~~Ea~~~G-~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 405 (424)
T 2iya_A 327 THAGMGSTMEALSNA-VPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEIRE 405 (424)
T ss_dssp ECCCHHHHHHHHHTT-CCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHT
T ss_pred ECCchhHHHHHHHcC-CCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 344556799999999 68888622111111 1223345677777754 344565554443 23333344444433322
Q ss_pred hhhhchHHHHHHHHHHHH
Q psy11113 409 RYLATLQSQMDTLVAVVR 426 (699)
Q Consensus 409 ~yfss~~~iv~TtL~iL~ 426 (699)
-...+.+++.+.+.++
T Consensus 406 --~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 406 --AGGARAAADILEGILA 421 (424)
T ss_dssp --SCHHHHHHHHHHHHHH
T ss_pred --cCcHHHHHHHHHHHHh
Confidence 2345566666655543
No 144
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=25.31 E-value=10 Score=39.89 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=41.7
Q ss_pred hhHHHHHhcCceEEEEeCCCccCCcccccC---CcceEEeccCCCHHHHH----HHHhcCCHHHHHHHHHhhHHHHHhhh
Q psy11113 339 MRLYEALKYGAVPVIVGGDNVMLPFEEVLD---WNKILIPLPVARIPELH----LLLRSISDEDIVAFRHQGRQVFTRYL 411 (699)
Q Consensus 339 ~Rl~eAL~~GCIPVIis~d~~~LPF~dvID---W~~fsV~ipe~~l~~L~----~iL~sis~e~i~~Mrrq~r~v~~~yf 411 (699)
.-++|||++|| |||.+ .+. --+.++++ -..+.+.+ .+..+|. .+|. . +...+|.++++..-+..+
T Consensus 293 ~~~lEAmA~G~-PVI~~-~~~-~~~~e~~~~~~~~G~l~~~--~d~~~La~ai~~ll~--d-~~r~~mg~~ar~~~~~~~ 364 (374)
T 2xci_A 293 HNLLEPTCWGI-PVIYG-PYT-HKVNDLKEFLEKEGAGFEV--KNETELVTKLTELLS--V-KKEIKVEEKSREIKGCYL 364 (374)
T ss_dssp CCCHHHHTTTC-CEEEC-SCC-TTSHHHHHHHHHTTCEEEC--CSHHHHHHHHHHHHH--S-CCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHhCC-CEEEC-CCc-cChHHHHHHHHHCCCEEEe--CCHHHHHHHHHHHHh--H-HHHHHHHHHHHHHHHhcc
Confidence 44799999997 77776 322 22334332 13444444 4555544 4444 3 456788888887777766
Q ss_pred hchHHHH
Q psy11113 412 ATLQSQM 418 (699)
Q Consensus 412 ss~~~iv 418 (699)
+..++++
T Consensus 365 ga~~~~~ 371 (374)
T 2xci_A 365 EKLREFL 371 (374)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 6555444
No 145
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.79 E-value=1.2e+02 Score=28.82 Aligned_cols=41 Identities=7% Similarity=0.132 Sum_probs=23.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+..-++.++.++.|+...+.+++.++..+...+.+.+++++
T Consensus 91 l~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 91 IALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666666666666666666666666665555544
No 146
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.78 E-value=1.6e+02 Score=24.66 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=21.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11113 3 MEINSYVSKIDQIKQDILHYQ----------DKLDKLKISINQAQLAHTESLRQNSPQL 51 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~----------~~l~~l~~~i~~a~~~~~e~~~~~~~~~ 51 (699)
.|...++..+.+++.++.+.+ .+|-.+|..++.=-+++|-+++.....+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLEGEe~Rl 63 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERL 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 445555555555544444433 2344455555554455565555444433
No 147
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=24.49 E-value=59 Score=21.97 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQ 35 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~ 35 (699)
|..+||.-.+.++|...|+-+|+.
T Consensus 2 irrlkqknarlkqeiaaleyeiaa 25 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAA 25 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHH
Confidence 445666666666666666666654
No 148
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.47 E-value=60 Score=28.08 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
++.+++++.+.....|=.+|+.+|++.+.++.
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~ 67 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555544433
No 149
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.45 E-value=31 Score=27.58 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLA 39 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~ 39 (699)
+++++..+.....+-+.|+.+|++.+.+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555554444443
No 150
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.43 E-value=1.1e+02 Score=27.77 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=6.9
Q ss_pred hhhhhhhhHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILH 21 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~ 21 (699)
||+.++..+..++-+|..
T Consensus 37 Ei~elrr~iq~L~~el~~ 54 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDN 54 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 151
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.36 E-value=1.2e+02 Score=29.77 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=29.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTE 42 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e 42 (699)
.|+.+..+..-+.+++..++.|+++|+.+++.++...+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 467777777777778888888888888888877777654
No 152
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.35 E-value=76 Score=27.71 Aligned_cols=33 Identities=6% Similarity=0.192 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
++++|+.+..+.+.++++|+.++++...++.+.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666555444
No 153
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.30 E-value=52 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=11.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDK 25 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~ 25 (699)
.+++..++.||++|++-...+.+
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHH
Confidence 34455555555555544444333
No 154
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.22 E-value=1.5e+02 Score=25.42 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q psy11113 24 DKLDKLKISINQAQLAHTESLRQN 47 (699)
Q Consensus 24 ~~l~~l~~~i~~a~~~~~e~~~~~ 47 (699)
.||.+++....+++..++|+-.+|
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn 54 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARN 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666664444
No 155
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.19 E-value=1.2e+02 Score=21.27 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISIN 34 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~ 34 (699)
+.+....-.++.-+++.|..|++|+.-++
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555666677777777888888876553
No 156
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.18 E-value=1.4e+02 Score=27.90 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=17.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLK 30 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~ 30 (699)
|+||+.+++..+.+|+.+.+++..|.+--
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~ 87 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNS 87 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Confidence 55666666666666666666655555433
No 157
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=24.06 E-value=1e+02 Score=31.70 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=49.6
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCc-c--cccCCcceEEeccCC--CHHHHHHHHhcCCHHHHHHHHHhhHHHHH
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPF-E--EVLDWNKILIPLPVA--RIPELHLLLRSISDEDIVAFRHQGRQVFT 408 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF-~--dvIDW~~fsV~ipe~--~l~~L~~iL~sis~e~i~~Mrrq~r~v~~ 408 (699)
+.++..-+.||+.+| +|||+-+.....+. . +.+......+.++.. ....|..+|.. ++...+|++..+.+-+
T Consensus 305 ~~~G~~t~~Eal~~G-~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~~ll~~--~~~~~~~~~~~~~~~~ 381 (398)
T 3oti_A 305 HHGGGGTVMTAIDAG-IPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLRRLIGD--ESLRTAAREVREEMVA 381 (398)
T ss_dssp ECCCHHHHHHHHHHT-CCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHHHHHHC--HHHHHHHHHHHHHHHT
T ss_pred ECCCHHHHHHHHHhC-CCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHHHHHcC--HHHHHHHHHHHHHHHh
Confidence 345556789999999 58877412112222 1 234445567777765 34556667753 5556667776665544
Q ss_pred hhhhchHHHHHHHHHHH
Q psy11113 409 RYLATLQSQMDTLVAVV 425 (699)
Q Consensus 409 ~yfss~~~iv~TtL~iL 425 (699)
. .+.+.+++.+.+.+
T Consensus 382 ~--~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 382 L--PTPAETVRRIVERI 396 (398)
T ss_dssp S--CCHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHh
Confidence 3 23455666555443
No 158
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.87 E-value=1.6e+02 Score=23.22 Aligned_cols=33 Identities=3% Similarity=0.024 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 11 KIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 11 ~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
.++++++.+.....+-..|+..|++.+.+...+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665554443
No 159
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=23.72 E-value=97 Score=31.90 Aligned_cols=90 Identities=18% Similarity=0.108 Sum_probs=47.9
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccCC--CHHHHHHHHhcC--CHHHHHHHHHhhHHHHH
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPVA--RIPELHLLLRSI--SDEDIVAFRHQGRQVFT 408 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe~--~l~~L~~iL~si--s~e~i~~Mrrq~r~v~~ 408 (699)
+.++..-+.||+.+|+ |+|+-+.....++ .+.+-...+.+.++.. +..+|.+.++.+ .++...+|++..+.+-+
T Consensus 319 ~~~G~~t~~Ea~~~G~-P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 397 (415)
T 3rsc_A 319 THGGMGTLMEALYWGR-PLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRR 397 (415)
T ss_dssp ESCCHHHHHHHHHTTC-CEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ECCcHHHHHHHHHhCC-CEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 4455566899999984 7777422111221 1234456677788765 344555444332 24445555555554433
Q ss_pred hhhhchHHHHHHHHHHHH
Q psy11113 409 RYLATLQSQMDTLVAVVR 426 (699)
Q Consensus 409 ~yfss~~~iv~TtL~iL~ 426 (699)
. .+.+.+++.+.+.++
T Consensus 398 ~--~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 398 A--GGAARAADAVEAYLA 413 (415)
T ss_dssp S--CHHHHHHHHHHHHHH
T ss_pred c--CHHHHHHHHHHHHhh
Confidence 2 244566666655554
No 160
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.49 E-value=1.3e+02 Score=29.65 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCcc
Q psy11113 2 VMEINSYVSKIDQIK----------QDILHYQDKLDKLKISINQAQLAHTESLRQ-NSPQLYPPL 55 (699)
Q Consensus 2 q~~i~~~~~~~e~~~----------~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~-~~~~~~~P~ 55 (699)
+.++...+.+.+..+ +++.+++.+++.++.++++|+.+++++..+ ..-.+..|.
T Consensus 73 ~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~ 137 (277)
T 2f1m_A 73 QAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPI 137 (277)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCC
No 161
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.47 E-value=99 Score=33.46 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11113 24 DKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 24 ~~l~~l~~~i~~a~~~~~e~ 43 (699)
.|=+++|-.|++...++.||
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 449 EENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhHhc
Confidence 33333333444444444333
No 162
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=23.37 E-value=1e+02 Score=22.27 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=22.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKIS 32 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~ 32 (699)
+++..|.|++-++-.+.++|+.|||.=
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 567788999999999999999999853
No 163
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.84 E-value=1.7e+02 Score=25.81 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=19.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
+|..+..+...+...+..+|.+.+.||..|+|-+.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455555555555555556656666555555443
No 164
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.75 E-value=1e+02 Score=33.67 Aligned_cols=44 Identities=18% Similarity=0.054 Sum_probs=25.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLR 45 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~ 45 (699)
+.||..|.+.+-..+.+|..++..|+.++..|++.+..+.+++.
T Consensus 90 l~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 90 IEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555555555555666666666666666666665555543
No 165
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=22.65 E-value=24 Score=25.81 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=23.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 4 EINSYVSKIDQIKQDILHYQDKLDKLKISI 33 (699)
Q Consensus 4 ~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i 33 (699)
+|..+..|+.+++++..+++.++.+++..+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888899988888888888877543
No 166
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.43 E-value=99 Score=26.48 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
+..+..+.+.++.+|.....+++.++..+++.+..+++.+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~ 106 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAM 106 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 167
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.26 E-value=97 Score=25.65 Aligned_cols=39 Identities=10% Similarity=0.207 Sum_probs=29.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
+..|..--.+|.+|++++..++.++..|+..|.+-|.-.
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456666677888888889999999999988888776633
No 168
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=21.87 E-value=1.3e+02 Score=31.71 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=31.1
Q ss_pred hhhhhhhhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 2 VMEINSYVSKIDQI-----KQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 2 q~~i~~~~~~~e~~-----~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+.+|......++++ .++|..+|.+++.|+..|++.+..+.+....
T Consensus 8 ~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 8 QKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444 4577778888888888888888877766543
No 169
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.58 E-value=1.4e+02 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=17.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 6 NSYVSKIDQIKQDILHYQDKLDKLKISINQAQ 37 (699)
Q Consensus 6 ~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~ 37 (699)
..+-+.++.++.+|...+.+++.|+.=++++|
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555565555555554
No 170
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=21.41 E-value=51 Score=29.79 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=37.7
Q ss_pred cccchhhHHHHHhcCceEEEEeCCCccCCc-ccccCCcceEEeccCC--CHHHHHHHHhcCCHHHHHHHHHhhHHH
Q psy11113 334 TIGIQMRLYEALKYGAVPVIVGGDNVMLPF-EEVLDWNKILIPLPVA--RIPELHLLLRSISDEDIVAFRHQGRQV 406 (699)
Q Consensus 334 s~~~s~Rl~eAL~~GCIPVIis~d~~~LPF-~dvIDW~~fsV~ipe~--~l~~L~~iL~sis~e~i~~Mrrq~r~v 406 (699)
+.++..-++||+.+| +|+|+.+-..+.+. .+.+....+.+.++.. +..+|.+.++.+-.+ .+||++++.+
T Consensus 92 ~~~G~~t~~Ea~~~G-~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~--~~~~~~a~~~ 164 (170)
T 2o6l_A 92 THGGANGIYEAIYHG-IPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVIND--PSYKENVMKL 164 (170)
T ss_dssp ECCCHHHHHHHHHHT-CCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred EcCCccHHHHHHHcC-CCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcC--HHHHHHHHHH
Confidence 344557799999999 68888722111111 1234445677888765 345555544433111 1355555543
No 171
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.41 E-value=1.6e+02 Score=26.48 Aligned_cols=34 Identities=6% Similarity=0.257 Sum_probs=21.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
+..+++...+.++++...+.++..||..++.++.
T Consensus 6 ~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEk 39 (106)
T 4e61_A 6 LVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEI 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666554
No 172
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.30 E-value=84 Score=25.39 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 10 SKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 10 ~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
+++++|+.++.+...+-..|+.+|++.+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666655543
No 173
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=21.03 E-value=2.2e+02 Score=24.06 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHT 41 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~ 41 (699)
+..|++.++..+...|+++.||-++.+.+|..++
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK 38 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLK 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887777766665444
No 174
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=20.98 E-value=1.9e+02 Score=24.73 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=28.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 2 VMEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTES 43 (699)
Q Consensus 2 q~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~ 43 (699)
|.|++..+.-.-..+..+..++.+-..|..+|++.+..++|+
T Consensus 30 ~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 30 SREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666777777777777788777777774
No 175
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.87 E-value=99 Score=25.79 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 12 IDQIKQDILHYQDKLDKLKISINQAQLAH 40 (699)
Q Consensus 12 ~e~~~~~i~~~~~~l~~l~~~i~~a~~~~ 40 (699)
|..+++++...+.+++.|+.++++.+..+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666555544
No 176
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.74 E-value=2.2e+02 Score=25.85 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=7.1
Q ss_pred hhhhhhhHHHHHHHHHH
Q psy11113 5 INSYVSKIDQIKQDILH 21 (699)
Q Consensus 5 i~~~~~~~e~~~~~i~~ 21 (699)
|..|...++.++.++..
T Consensus 17 Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 17 IERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 177
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=20.35 E-value=1.8e+02 Score=20.25 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 13 DQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 13 e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
-++++++.++..|--+|+.+++|.+.
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666777666666666666655443
No 178
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.15 E-value=1.3e+02 Score=24.62 Aligned_cols=10 Identities=40% Similarity=0.312 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q psy11113 34 NQAQLAHTES 43 (699)
Q Consensus 34 ~~a~~~~~e~ 43 (699)
..|+.++.|+
T Consensus 52 ~~~k~Ei~el 61 (77)
T 3trt_A 52 RQAKQESTEY 61 (77)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 179
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.15 E-value=1.8e+02 Score=24.30 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11113 8 YVSKIDQIKQDILHYQDKLDKLKISINQAQLAHTESLRQ 46 (699)
Q Consensus 8 ~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~~~~e~~~~ 46 (699)
+....++.+..|.+...+|.+++.++++--.++.|++..
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888889999998888877788888664
No 180
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.07 E-value=1.8e+02 Score=29.07 Aligned_cols=36 Identities=8% Similarity=0.180 Sum_probs=25.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 3 MEINSYVSKIDQIKQDILHYQDKLDKLKISINQAQL 38 (699)
Q Consensus 3 ~~i~~~~~~~e~~~~~i~~~~~~l~~l~~~i~~a~~ 38 (699)
.|+..+..+++++++++...++++.|+.++.++.+.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777766543
No 181
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.01 E-value=2.2e+02 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11113 19 ILHYQDKLDKLKISINQAQLAHTESL 44 (699)
Q Consensus 19 i~~~~~~l~~l~~~i~~a~~~~~e~~ 44 (699)
|.+...+|.++|.++++--..+.+++
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444433333344443
Done!