RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11113
(699 letters)
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 170 bits (432), Expect = 4e-48
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 9/152 (5%)
Query: 546 SNKQREQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDIG--- 602
S + FT+I+ TY R +L+ L+ +P L+KV+VVWN+V + W +G
Sbjct: 23 SKSALDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHP 82
Query: 603 VPVVVVRTNTNDLNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFP 662
+PV+ N + NR + + +ET AVL +DDD + +++FAF +W++ D+I+GF
Sbjct: 83 IPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFV 142
Query: 663 GRYHAWDQNNQGG------WLYNSNYSCELSM 688
R H + + SM
Sbjct: 143 PRKHVSTSSGIYSYGGFELQTPGPGNGDQYSM 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 6e-10
Identities = 92/641 (14%), Positives = 171/641 (26%), Gaps = 189/641 (29%)
Query: 17 QDILHYQDKLDKLKISI--------NQAQLAHTESLRQNSPQLYPPLMIKASSLPRPVTP 68
I+ +D + Q E LR N Y LM + R P
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN----YKFLMSPIKTEQR--QP 105
Query: 69 SSGQCRTMSECFDFSRCSLTSGFPMFVYDPEKYY----------PAWKISL-----FLKS 113
S R E D V + Y PA + + K+
Sbjct: 106 S-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 114 T----IYQALKFNPHFTSNPKEACVFVVLIG---ESDVLFSNVQDLY------------- 153
+ + K +F + + + + +Q L
Sbjct: 165 WVALDVCLSYKVQCKMDFK-----IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 154 --KLPYWGNNVGTE---LFRIRPKVD--LVLPPGVGLPGGDIWNE---------CPYLLP 197
+ +++ E L + +P + LVL ++ N C LL
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLT 271
Query: 198 ARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDG-DRDNSPSIEASSLTKYLTTSTSDLF 256
R K + + + H + + D S+ L KYL DL
Sbjct: 272 TRFKQVTDFLSAATTTH--------ISLDHHSMTLTPDEVKSL----LLKYLDCRPQDLP 319
Query: 257 HFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDKRSDKTRNR 316
E + + S D L+ W DN N DK +
Sbjct: 320 R--------------EVLTTNPRRLSIIAESIRDGLATW--DNWKHVN-CDKLT-TIIES 361
Query: 317 HSDEETVEDDRAERYASTIGIQMRLYEALKYGAV-PVIVGGDNVMLPFEEVLD--WNKIL 373
+ + R ++++ L +V P + +P +L W +
Sbjct: 362 SLNVLEPAEYR------------KMFDRL---SVFP-----PSAHIP-TILLSLIWFDV- 399
Query: 374 IPLPVARIPEL---HLLLRSISDEDIVAFRHQGRQVFTRYLATLQSQMDTLVAV---VRD 427
+ + L S+ ++ + + YL L+ +++ A+ + D
Sbjct: 400 ----IKSDVMVVVNKLHKYSLVEKQPKESTI---SIPSIYLE-LKVKLENEYALHRSIVD 451
Query: 428 RLGIPPAPVMNTKAVSVFRQDFTPLKMDPVI--------AEAEPEENLGPLEPPYPSPSF 479
IP + D P +D E E + + F
Sbjct: 452 HYNIP---------KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502
Query: 480 WRNNTLFLSQGYEMWNTHLSPFYLYPQLPF--DPILPSDAKF--MGSDYGFRPINKGAGG 535
+ WN S QL F I +D K+ + +
Sbjct: 503 LEQK---IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI----------- 548
Query: 536 SGKEFYENLGSNKQREQFTIII---LTYERDQVLINSLSRL 573
+F + N ++T ++ L E + + + ++
Sbjct: 549 --LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 44.1 bits (103), Expect = 2e-04
Identities = 51/352 (14%), Positives = 91/352 (25%), Gaps = 135/352 (38%)
Query: 438 NTKAVSVFRQDF--------TPLKMDPVIAEAEPEENLGPLEPPYPSPS---FWRNNTLF 486
+SVF F ++++ E + + S + FW
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM--SKDAVSGTLRLFW----TL 71
Query: 487 LSQG----YEMWNTHLSPFY--LYPQLPFDPILPSDAKFMGSDYG---------FRPIN- 530
LS+ + L Y L + + PS M + F N
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 531 ------------------------KGAGGSGKE--------------------FYENLGS 546
G GSGK F+ NL +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 547 NKQREQFTIII--LTYERDQVL-------------INSL-SRLNNL----PYLNKVVV-- 584
E ++ L Y+ D I+S+ + L L PY N ++V
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 585 -VWNSVQPPREDLRWPDIGVPVVVV---RTNTNDLNNRFKPYDVIETEAVLNMDDDVYLR 640
V N+ + ++ +++ + T+ L+ T L+ L
Sbjct: 252 NVQNA-----KAWNAFNLSCKILLTTRFKQVTDFLSA------ATTTHISLDHHSMT-LT 299
Query: 641 HDEIMFAFRVWREQRDR---------------IVG-----FPGRYHAWDQNN 672
DE+ + + R + I+ + W N
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Score = 33.3 bits (75), Expect = 0.37
Identities = 71/459 (15%), Positives = 133/459 (28%), Gaps = 128/459 (27%)
Query: 292 LSRWKLDNEDMNNGTDKRSDKTRNR-HSDEETVEDDRAERYASTIGIQMRLYEALKYGAV 350
+S K + + T + R+R ++D + R + ++ L E L+
Sbjct: 95 MSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKN 152
Query: 351 PVIVG----GDNVM-------LPFEEVLD----W---------NKILIPL---------- 376
+I G G + + +D W +L L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 377 ------PVARIP-ELH-------------------LLLRSISDEDIV-AFRHQGRQ-VFT 408
+ I +H L+L ++ + AF + + T
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 409 RYLATLQSQMDTLVAVVRDRLGIPPAPVMNTK--AVSVFRQDFTPLKMDPVIAEAEPEEN 466
R+ + D L A + + + T S+ + L P + P E
Sbjct: 273 RF----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRP---QDLPREV 322
Query: 467 LG--PLE--------PPYPS-PSFWRN-NTLFLSQGYEMWNTHLSPFY---LYPQLPFDP 511
L P + W++ N L+ E L P ++ +L
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---S 379
Query: 512 ILPSDAKFMGSDYG---FRPINKGAGGSGKEFYENLGSNKQREQFTIIILTYERDQVLIN 568
+ P A F I + ++ KQ ++ TI I + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLE 434
Query: 569 SLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDIGVPVVVVRTNTNDLNNRFKPY-----D 623
+L N L++ +V + P+ D+ P L+ F +
Sbjct: 435 LKVKLENEYALHRSIV--DHYNIPKT-FDSDDLIPPY---------LDQYFYSHIGHHLK 482
Query: 624 VIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFP 662
IE + + V+L D FR + EQ+ R
Sbjct: 483 NIEHPERMTLFRMVFL--D-----FR-FLEQKIRHDSTA 513
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 7e-06
Identities = 96/631 (15%), Positives = 163/631 (25%), Gaps = 229/631 (36%)
Query: 31 ISINQAQLAHTESLRQNSPQLYPPLM-IK---ASSLPRPVT-------PSS--------- 70
++++ L H + + ++ LP P P++
Sbjct: 9 LTLSHGSLEHVLLV---PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 71 ---------GQCRTMSECF-----DFSRC--------SLTSGFPMFVYDPEKYYPAWKIS 108
+ + +F C +L + E K
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL-----QENDTTLVKTK 120
Query: 109 LFLKSTIYQALKFNPHFTSNPKEACVF---------VVLI----GESDVLFSNVQDLYKL 155
+K+ A + +F +V I G +D F ++DLY+
Sbjct: 121 ELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 156 --PYWGNNVGT------ELFRIRPKVDLVLPPGVGLPGGDI--WNECPYLLPARRKYLLS 205
G+ + EL R + V G+ +I W E P P + YLLS
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NILEWLENPSNTPD-KDYLLS 233
Query: 206 YQGSGRRIHTQTPGVEEERITKPNDGDRDNSPSIEASSLTKYLTT------STSDLFHFD 259
S P I L Y+ T + +L
Sbjct: 234 IPISC--------------------------PLIGVIQLAHYVVTAKLLGFTPGELR--- 264
Query: 260 WSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNNGTDK----------R 309
S + + S+ + + + D W E K R
Sbjct: 265 -SYLKGATGH-SQGL------VTAVAIAETDS---W----ESFFVSVRKAITVLFFIGVR 309
Query: 310 SDKTRNRHSDEETVEDDRAERYASTIGIQ--MRLYEALKYGAVPVIVGGDNVMLPFEEVL 367
+ S ++ +D E G+ M L V V N LP +
Sbjct: 310 CYEAYPNTSLPPSILEDSLEN---NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK-- 364
Query: 368 DWNKILIPL---PVARI----PE----LHLLLRSIS-----DEDIVAFRHQGRQVFTRYL 411
++ I L + P+ L+L LR D+ + F + + R+L
Sbjct: 365 ---QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 412 AT--------LQSQMDTLVA-VVRDRLGIPPA----PVMNTKAVSVFRQDFTPLKMDPVI 458
L D + +V++ + PV +T S R + I
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSI--SERI 479
Query: 459 AEAEPEENLGPLEPPYPSPSFWRNNTLFLSQGYEMWNTHLSPFYLYPQLPFDP------- 511
+ P W T F + TH+ L F P
Sbjct: 480 VDCIIRL-----------PVKWETTTQFKA-------THI--------LDFGPGGASGLG 513
Query: 512 --------------ILPSDAKF-MGSDYGFR 527
I+ DYGF+
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 47.0 bits (111), Expect = 2e-05
Identities = 90/604 (14%), Positives = 161/604 (26%), Gaps = 236/604 (39%)
Query: 186 GDIWNECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDG-DRDNSPSIEASSL 244
G + E L+P ++ S + + + +P +G D+ P+ A +
Sbjct: 14 GSL--EHVLLVPTASFFIASQL---QEQFNKI-------LPEPTEGFAADDEPTTPAELV 61
Query: 245 TKYL--TTSTSD--------------LFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIY 288
K+L +S + L F+ + +D+ H
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-----------H--ALAA-- 106
Query: 289 ADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTIGIQMRLYEALKYG 348
KL E+ + K + +N + + ++ S L+ A+ G
Sbjct: 107 -------KLLQEN-DTTLVKTKELIKNYITARIMAKRPFDKKSNS------ALFRAVGEG 152
Query: 349 AVPVIV--GGD-NVMLPFEEVLDWNKILIPLPVARIPELHLLLRSISDEDIVAFRH--QG 403
++ GG N FEE+ D + L I L + + A + QG
Sbjct: 153 NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 404 RQVF-----------TRYLAT----------LQSQMDTLV--AVVRDRLGIPPAPVMN-T 439
+ YL + +Q L V LG P + +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-----LAHYVVTAKLLGFTPGELRSYL 267
Query: 440 KAVSVFRQDFTPLKMDPVIAEAEPEENLGPLEPPYPSPSFWRNNTLFLS----QGYEMWN 495
K + Q L IAE + E SF+ + ++ G
Sbjct: 268 KGATGHSQG---LVTAVAIAETDSWE------------SFFVSVRKAITVLFFIGVR--- 309
Query: 496 THLSPFYLYPQLPFDPILPSDAKFMGSDYGFRPINKGAGG-------SG----------K 538
+ + YP P + D+ + G S
Sbjct: 310 CYEA----YPNTSLPPSILEDS-----------LENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 539 EFYENLGSNKQREQFTIIILTYERDQVLIN------------SLSRLNN----------- 575
+ +L + KQ + I L+N SL LN
Sbjct: 355 KTNSHLPAGKQ-----VEI-------SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 576 ------------------LP--------YLNKVV-VVWNSVQPPREDLRWP--DIGVPVV 606
LP L ++ + + ++ + DI +PV
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV--KNNVSFNAKDIQIPV- 459
Query: 607 VVRTNTNDLNNRFKPYDVIETEAVL-NMDDDVYLRHDEIMFAFRV-WREQRD----RIVG 660
YD + L + + R + + V W I+
Sbjct: 460 ---------------YDT-FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 661 F-PG 663
F PG
Sbjct: 504 FGPG 507
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.032
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 18/45 (40%)
Query: 16 KQDILHYQDKLDKLKISINQAQLAHTESLRQNSPQLYPPLMIKAS 60
KQ + K KL+ SL+ + P L IKA+
Sbjct: 19 KQAL-----K--KLQ-----------ASLKLYADDSAPALAIKAT 45
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 36.5 bits (84), Expect = 0.034
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 15/103 (14%)
Query: 554 TIIILTYERDQVLINSLSRLNNLPYLN----KVVVVWNSVQPPREDLRWPDI---GVPVV 606
+ I T+ R +N+L L P ++ V+V + R+ +P +
Sbjct: 183 AVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRL 242
Query: 607 VVRTNTNDL-----NNR--FKPYDVIETEAVLNMDDDVYLRHD 642
+ N L +R ++ + + +L MDDD+ L D
Sbjct: 243 SIHDQPN-LGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPD 284
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.5
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 289 ADDLSRWKLDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTI 335
DL W N+ + +K K NR +D+ + A I
Sbjct: 117 KKDLEEW---NQRQSEQVEKN--KINNRIADKAFY----QQPDADII 154
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 2.4
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 12/61 (19%)
Query: 457 VIAEAEPEENLG----PLEPPYPSPSFWRNNTLFLSQGYEMWNTHLSP----FYLYPQLP 508
VIA EP EN+ P E + + NN + + + T +Y+ Q
Sbjct: 165 VIA-YEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKC-TFWDAISKLYYV--QFF 220
Query: 509 F 509
F
Sbjct: 221 F 221
>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A
{Methanocaldococcus jannaschii}
Length = 268
Score = 30.0 bits (67), Expect = 2.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 301 DMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTIGIQMRLYEAL-KYGAVPVIVGGDNV 359
D+NN T +D + Y + +++ L E L KY A+ +GGDN
Sbjct: 138 DINNITGTLTDIVSAYDT------------YLNVNKVKLALMEELLKYNALLFFIGGDNF 185
Query: 360 MLP 362
M P
Sbjct: 186 MAP 188
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase
domain C-TE orotate phosphoribosyltransferase domain,
transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Length = 453
Score = 30.1 bits (68), Expect = 2.6
Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 16/145 (11%)
Query: 126 TSNPKEACVFVVLIGESDVLFSNVQDLYKLPYWGNN------VGT----ELFRIRPKVD- 174
TSN + L L+ V + + W N VG L R+R +
Sbjct: 137 TSNK-GSNDLQCLRVGDRYLYEAVAERAE-GPWNVNGNVGLVVGATDPVALARVRARAPT 194
Query: 175 -LVLPPGVGLPGGDIWNECPYLLPARRKYLLSYQGSGRRIHTQTPGVEEERITKPNDGDR 233
L PG+G GG + L A +L R + +
Sbjct: 195 LWFLVPGIGAQGGSLKASLDAGLRADGSGMLI--NVSRGLARAADPRAAAKELCEEINAI 252
Query: 234 DNSPSIEASSLTKYLTTSTSDLFHF 258
+ + + +F
Sbjct: 253 RFAKGASVELAKALVDSHCVRFGNF 277
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis,
nitrogen metabolism, manganese metalloenzyme; 2.15A
{Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A*
4cev_A 5cev_A*
Length = 299
Score = 29.1 bits (66), Expect = 5.3
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 332 ASTIGIQMRLYEALKYGAVPVIVGGD 357
+ + + + ++ G P+++GGD
Sbjct: 73 EANEKLAAAVDQVVQRGRFPLVLGGD 98
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid
inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo
sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A
2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A*
3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A*
3tf3_A 3th7_A 3the_A* ...
Length = 322
Score = 28.8 bits (65), Expect = 6.9
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 332 ASTIGIQMRLYEALKYGAVPVIVGGD 357
++ + ++ E K G + +++GGD
Sbjct: 75 KASEQLAGKVAEVKKNGRISLVLGGD 100
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 28.7 bits (64), Expect = 8.4
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 442 VSVFRQDFTPLKMDPVIAE---------AEPEENLGPLEPPYPSPSFWRNNTLFLSQGYE 492
V+V D T + D V E AEPE LGPL + +LFL
Sbjct: 301 VTVL--DVT--RFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAY-TSLFLDSQVV 355
Query: 493 MWN 495
WN
Sbjct: 356 KWN 358
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme
transport, transport protein; HET: HEM; 2.05A {Shigella
dysenteriae} PDB: 2rg7_A
Length = 256
Score = 28.4 bits (64), Expect = 8.4
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 582 VVVVWNSVQPPR--EDLRWPDIGVPVVVVRTNTNDLN 616
V+ W P + LR V VV + L
Sbjct: 62 SVITWQDAGPQIVLDQLR--AQKVNVVTLPRVPATLE 96
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural
genomics, joint CENT structural genomics, JCSG; 2.00A
{Staphylococcus epidermidis}
Length = 332
Score = 28.3 bits (63), Expect = 9.5
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 582 VVVVWNSVQPPREDLRWPDIG-VPVVVVRTNTNDLNNRFKPYDVIETEAVLNMDDDVYLR 640
V+ + R+ + PV V + D R V+ ++ + ++ Y+R
Sbjct: 248 FVICSSESYSKDVLQRYEEKNSKPVAVHKEQLKDSGIR-----VLTASNLVEISNEHYVR 302
Query: 641 HDEIMFA---FRVWREQRDRIVGFPGRYH 666
H+ + + + + E I P
Sbjct: 303 HNTKVLSKMIYELALELTSTIRFTPSDKK 331
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 28.3 bits (63), Expect = 9.6
Identities = 12/121 (9%), Positives = 37/121 (30%)
Query: 237 PSIEASSLTKYLTTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWK 296
E K ++ + D + +++D + + + V+ + L
Sbjct: 74 GDNEMKQEKKTNNYINNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKMNGYVN 133
Query: 297 LDNEDMNNGTDKRSDKTRNRHSDEETVEDDRAERYASTIGIQMRLYEALKYGAVPVIVGG 356
+ + S + +++ + E + + + L+ + +GG
Sbjct: 134 HNFYGNYEENNVISTNDKYKNNCYYDNIRNIKEIGIFSKNLFDTMSNELRKKNFVLNIGG 193
Query: 357 D 357
D
Sbjct: 194 D 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.419
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,051,675
Number of extensions: 684906
Number of successful extensions: 1441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1431
Number of HSP's successfully gapped: 26
Length of query: 699
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 599
Effective length of database: 3,909,693
Effective search space: 2341906107
Effective search space used: 2341906107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.7 bits)