RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11113
         (699 letters)



>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
           (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 265

 Score = 93.6 bits (231), Expect = 8e-22
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 551 EQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQPPREDLRWPDIGVPVVVVR- 609
           + FT+I+ TY R  +L+  L+    +P L+KV+VVWN+V     +  W  +G   + V  
Sbjct: 3   DSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIF 62

Query: 610 --TNTNDLNNRFKPYDVIETEAVLNMDDDVYLRHDEIMFAFRVWREQRDRIVGFPGRYHA 667
                N + NR + +  +ET AVL +DDD  +   +++FAF +W++  D+I+GF  R H 
Sbjct: 63  KPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHV 122

Query: 668 WDQNN------QGGWLYNSNYSCELSM 688
              +                   + SM
Sbjct: 123 STSSGIYSYGGFELQTPGPGNGDQYSM 149


>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
           {Guinea pig (Cavia porcellus) [TaxId: 10141]}
          Length = 112

 Score = 32.1 bits (73), Expect = 0.052
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 532 GAGGSGKEFYENLGSNKQREQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVW-NSVQ 590
           G   +G       G+    +Q+ I   T + D    N      ++  L  V  +W N+V 
Sbjct: 12  GKKVTGHILVSLFGNKGNSKQYEIFKGTLKPDSTHSNEFDSDVDVGDLQMVKFIWYNNVI 71

Query: 591 PPREDLRWPDIGVPVVVVRTNTN 613
            P      P +G   ++V TN  
Sbjct: 72  NP----TLPRVGASKIIVETNVG 90


>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 361

 Score = 31.0 bits (70), Expect = 0.44
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 242 SSLTKYLTTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNED 301
           S    +   +  D F+ D S V  +   Y+    S VL  +  ++      S W + + +
Sbjct: 198 SGTGIFPYATGGDGFYADGSFVQHTTFAYTGGYGSSVLETTANLMYLLSG-STWSVSDPN 256

Query: 302 MNN 304
            +N
Sbjct: 257 QSN 259


>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain
           {Dog (Canis familiaris) [TaxId: 9615]}
          Length = 113

 Score = 28.3 bits (63), Expect = 1.1
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 532 GAGGSGKEFYENLGSNKQREQFTIIILTYERDQVLINSLSRLNNLPYLNKVVVVWNSVQP 591
           G   +G+      GS     QF I     +      N      ++  + KV  +WN+   
Sbjct: 12  GKRATGQAKVALFGSKGNTHQFNIFKGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNVV 71

Query: 592 PREDLRWPDIGVPVVVVRTNTND 614
              +  +P +G   + V+     
Sbjct: 72  ---NPTFPKVGAAKITVQKGEEK 91


>d1cb8a1 a.102.3.2 (A:26-335) Chondroitinase AC {Pedobacter
           heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 310

 Score = 29.1 bits (65), Expect = 2.0
 Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 249 TTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNN 304
                +   +D+S +         S  +  +     +  Y  D + + L  E +  
Sbjct: 184 FVHYEEGLQYDYSYLQHGPQLQISSYGAVFITGVLKLANYVRD-TPYALSTEKLAI 238


>d1n7oa1 a.102.3.2 (A:170-540) Hyaluronate lyase {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 371

 Score = 28.7 bits (64), Expect = 2.3
 Identities = 8/56 (14%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 249 TTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNN 304
                + F+ D S +  ++V Y+ +  + ++   + +L      ++  +D + M  
Sbjct: 214 LVDQGEGFYQDGSYIDHTNVAYTGAYGNVLIDGLSQLLPVIQK-TKNPIDKDKMQT 268


>d1f1sa1 a.102.3.2 (A:249-619) Hyaluronate lyase {Streptococcus
           agalactiae [TaxId: 1311]}
          Length = 371

 Score = 28.7 bits (64), Expect = 2.7
 Identities = 10/56 (17%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 249 TTSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNN 304
           T + ++ F+ D S +  ++V Y+ +  + ++   T +L    + + +K+ N++++ 
Sbjct: 215 TATKAEGFYADGSYIDHTNVAYTGAYGNVLIDGLTQLLPIIQE-TDYKISNQELDM 269


>d1rwha1 a.102.3.2 (A:4-372) Chondroitinase AC {Arthrobacter
           aurescens [TaxId: 43663]}
          Length = 369

 Score = 28.0 bits (62), Expect = 3.8
 Identities = 7/55 (12%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 250 TSTSDLFHFDWSCVSSSDVCYSESVRSEVLHQSTFVLIYADDLSRWKLDNEDMNN 304
            ++ D    D S +  S   Y+ S    +L   + +       + +++ +   + 
Sbjct: 215 VTSGDGIFRDGSFIQHSTTPYTGSYGVVLLTGLSKLFSLLGG-TAFEVSDPTRSI 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0554    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,734,881
Number of extensions: 134877
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 11
Length of query: 699
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 607
Effective length of database: 1,144,436
Effective search space: 694672652
Effective search space used: 694672652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)