BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11114
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 48.9 bits (115), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 11 EFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFST----------LVR 60
+ D S +LHGEQYL + LPT G +++ KV DV+DKG A + + LVR
Sbjct: 389 QVDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAVVVTNSESFDESGRLLVR 448
Query: 61 DQS 63
+QS
Sbjct: 449 NQS 451
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG 49
G + ++VLHGEQYL L++PLP G + V DVLDKG
Sbjct: 79 GLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKG 119
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 12 FDLSQVLHGEQYLTLHQPL-PTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRY 65
F+ + +LHGEQ + + +PL P+ G + + KVI DKGK TL+ Q+++
Sbjct: 118 FNPAMILHGEQSVEILRPLDPSGGTLTGKTKVISFYDKGK-----GTLMETQTQF 167
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 12 FDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK 50
F+ + +LHG Q + LH PLP G + +V D+ DKG+
Sbjct: 94 FNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGE 132
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVL 46
VLHGEQYL L++PLP G + V DVL
Sbjct: 62 VLHGEQYLELYKPLPRAGKLKCEAVVADVL 91
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 30.4 bits (67), Expect = 0.27, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 8 LGKEFDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKG 49
L + F+ +LHGE YL +H P PT G+I + + I KG
Sbjct: 62 LLRNFNPXLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKG 104
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 30.0 bits (66), Expect = 0.32, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 8 LGKEFDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKG 49
L + F+ +LHGE YL +H P PT G+I + + I KG
Sbjct: 62 LLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKG 104
>pdb|2DQW|A Chain A, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DQW|B Chain B, Crystal Structure Of Dihydropteroate Synthase (Folp) From
Thermus Thermophilus Hb8
pdb|2DZA|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZA|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 4-Aminobenzoate
pdb|2DZB|A Chain A, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
pdb|2DZB|B Chain B, Crystal Structure Of Dihydropteroate Synthase From Thermus
Thermophilus Hb8 In Complex With 6hmppp
Length = 294
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 19 HGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHD 78
HG + +H P+P +++ + DV+ + K + Q+R A+S VP D
Sbjct: 145 HGVAAVVMHMPVPDPATMMAHARYRDVVAEVK------AFLEAQARRALSA-GVPQVVLD 197
Query: 79 PSYG 82
P +G
Sbjct: 198 PGFG 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,689,644
Number of Sequences: 62578
Number of extensions: 96596
Number of successful extensions: 232
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 11
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)