BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11114
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VXJ0|DHB4_DROME Peroxisomal multifunctional enzyme type 2 OS=Drosophila
melanogaster GN=Mfe2 PE=1 SV=1
Length = 598
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 11 EFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFST----------LVR 60
+ D S +LHGEQYL + LPT G +++ KV DV+DKG A + + LVR
Sbjct: 382 QVDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGAVVVTNSESFDESGRLLVR 441
Query: 61 DQS 63
+QS
Sbjct: 442 NQS 444
>sp|P51660|DHB4_MOUSE Peroxisomal multifunctional enzyme type 2 OS=Mus musculus
GN=Hsd17b4 PE=1 SV=3
Length = 735
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG 49
G F+ ++ LHGEQYL L++PLP G++ + D+LDKG
Sbjct: 395 GLSFNFAKALHGEQYLELYKPLPRSGELKCEAVIADILDKG 435
>sp|P51659|DHB4_HUMAN Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens
GN=HSD17B4 PE=1 SV=3
Length = 736
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG 49
G + ++VLHGEQYL L++PLP G + V DVLDKG
Sbjct: 396 GLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKG 436
>sp|P97852|DHB4_RAT Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus
GN=Hsd17b4 PE=1 SV=3
Length = 735
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG 49
G + ++VLHGEQYL L++PLP G++ + D+LDKG
Sbjct: 395 GLSINFAKVLHGEQYLELYKPLPRSGELKCEAVIADILDKG 435
>sp|Q01373|FOX2_NEUCR Peroxisomal hydratase-dehydrogenase-epimerase OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=fox-2 PE=1 SV=1
Length = 894
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 12 FDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKGKHA 52
F +LHGEQYL + + P+PT G +VS+ K+++V+DKG A
Sbjct: 686 FSPMMLLHGEQYLEVRKYPIPTSGRLVSKGKLLEVVDKGSAA 727
>sp|Q8VYI3|ECH2_ARATH Enoyl-CoA hydratase 2, peroxisomal OS=Arabidopsis thaliana GN=ECH2
PE=1 SV=1
Length = 309
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHA 52
G ++D S +LHG+QY+ +++PLP+ ++++ + + DKGK A
Sbjct: 85 GFKYDPSLLLHGQQYIEIYRPLPSKASLINKVSLAGLQDKGKAA 128
>sp|Q54XZ0|MFEB_DICDI Probable enoyl-CoA hydratase 2 OS=Dictyostelium discoideum GN=mfeB
PE=2 SV=1
Length = 294
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGL 54
G EFD +LHGEQ L + +P G V+ K+ ++ DKGK A L
Sbjct: 74 GIEFDPMMLLHGEQELEILNEIPVEGVFVTESKITNLYDKGKGALL 119
>sp|Q02207|FOX2_YEAST Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=FOX2 PE=1
SV=1
Length = 900
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 12 FDLSQVLHGEQYLTLHQP-LPTYGDIVSRCKVIDVLDKGKHAGL 54
F+ + +LHGEQY L P +P+ G + + K + VLDK A L
Sbjct: 682 FNYAMLLHGEQYFKLCTPTMPSNGTLKTLAKPLQVLDKNGKAAL 725
>sp|P36352|POLR_PHMV RNA replicase polyprotein (Fragment) OS=Physalis mottle virus PE=3
SV=1
Length = 178
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 25 TLHQPLPTYGDIVSRCKVIDVLDKGKHA--GLFSTLVRDQSRYAISKFTVPLFPHDPSYG 82
T Q L D + K++ ++ K K A FS L + + +SK ++P FP++P
Sbjct: 108 TPSQKLLLSNDPIPESKLLALVHKIKWASKAFFSELPQKAREFLVSKSSLPSFPNNPKVS 167
Query: 83 ERES 86
E ES
Sbjct: 168 ELES 171
>sp|P30158|ATPB_DICDH ATP synthase subunit beta, chloroplastic OS=Dictyota dichotoma
GN=atpB PE=3 SV=1
Length = 481
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSR-------CKVIDVL---DKGKH 51
R+F + LG+ D ++ GE L +H+P P++ D+ ++ KV+D+L +G
Sbjct: 98 RIFNV-LGQTVDNIEIGTGEDRLPIHRPAPSFTDLETKPAIFETGIKVVDLLAPYRRGGK 156
Query: 52 AGLF 55
GLF
Sbjct: 157 IGLF 160
>sp|A8LC73|Y6066_FRASN UPF0336 protein Franean1_6066 OS=Frankia sp. (strain EAN1pec)
GN=Franean1_6066 PE=3 SV=1
Length = 151
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 12 FDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFST---------LVRDQ 62
D S V+HG+Q TLH+P+ ++V R + + G++ L ++ LV +
Sbjct: 79 LDYSLVVHGDQRFTLHRPVVAGDELVVRSTLASIRSVGRNEVLVTSYEFTTTSGELVAEG 138
Query: 63 SRYAISKFTVP 73
+ +S+ T P
Sbjct: 139 TCSLVSRGTAP 149
>sp|A0Q2Z4|ATPB_CLONN ATP synthase subunit beta OS=Clostridium novyi (strain NT) GN=atpD
PE=3 SV=1
Length = 464
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKH 51
RLF + LGK D E+Y +H+P PT+ + + KVID++ KG
Sbjct: 90 RLFNV-LGKTIDEEGEFKAEEYYPIHRPAPTFEEQSVEPEMFETGIKVIDLIAPYQKGGK 148
Query: 52 AGLF 55
GLF
Sbjct: 149 IGLF 152
>sp|Q1LTV4|ATPB_BAUCH ATP synthase subunit beta OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=atpD PE=3 SV=1
Length = 457
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Query: 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGDIV-------SRCKVIDV---LDKGKHAGLF 55
LG+ D+ +++ E++ ++H+ P Y ++ + KVID+ L KG AGLF
Sbjct: 92 LGEPIDMKGIINAEEHWSIHRSAPRYEELALSQEILETGIKVIDLMCPLVKGGKAGLF 149
>sp|A4WUM7|ATPB_RHOS5 ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=atpD PE=3 SV=1
Length = 475
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%)
Query: 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKHAGLF 55
+G+ D + G+ +HQP PT+ + +V+ KVID+L KG GLF
Sbjct: 94 IGEPIDEKGPVSGDSTRAIHQPAPTFAEQSTTSEILVTGIKVIDLLAPYSKGGKIGLF 151
>sp|Q9Z687|ATPB_CLOAB ATP synthase subunit beta OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=atpD PE=3 SV=1
Length = 466
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKH 51
RLF + LG+ D + ++ ++Y +H+P PT+ + + KVID+L KG
Sbjct: 90 RLFNV-LGQTIDEAGDMNADKYYPIHRPAPTFEEQSVQPEMFETGIKVIDLLAPYQKGGK 148
Query: 52 AGLF 55
GLF
Sbjct: 149 IGLF 152
>sp|P22414|FOX2_CANTR Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis
PE=1 SV=2
Length = 906
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 8 LGKEFDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKG 49
L + F+ +LHGE YL +H P PT G+I + + I KG
Sbjct: 688 LLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKG 730
>sp|Q24MP1|ATPB_DESHY ATP synthase subunit beta OS=Desulfitobacterium hafniense (strain
Y51) GN=atpD PE=3 SV=2
Length = 465
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKH 51
R+F + LGK D + +H + +H+P P + D + + KVID+L KG
Sbjct: 89 RIFNV-LGKAIDNGEEVHTDTSYPIHRPAPAFVDQDPSTVMLETGIKVIDLLAPYSKGGK 147
Query: 52 AGLF 55
GLF
Sbjct: 148 IGLF 151
>sp|B8FZ34|ATPB_DESHD ATP synthase subunit beta OS=Desulfitobacterium hafniense (strain
DCB-2 / DSM 10664) GN=atpD PE=3 SV=1
Length = 465
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKH 51
R+F + LGK D + +H + +H+P P + D + + KVID+L KG
Sbjct: 89 RIFNV-LGKAIDNGEEVHTDTSYPIHRPAPAFVDQDPSTVMLETGIKVIDLLAPYSKGGK 147
Query: 52 AGLF 55
GLF
Sbjct: 148 IGLF 151
>sp|P37399|ATPBM_DAUCA ATP synthase subunit beta, mitochondrial OS=Daucus carota GN=ATPB
PE=3 SV=1
Length = 547
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKHAGLF 55
+G+ D + +QYL +H+ PT+ D +V+ KV+D+L KG GLF
Sbjct: 168 IGEPIDHRGEIKTDQYLPIHREAPTFVDQATEQQILVTGIKVVDLLAPYQKGGKIGLF 225
>sp|Q31DM0|ATPB_THICR ATP synthase subunit beta OS=Thiomicrospira crunogena (strain
XCL-2) GN=atpD PE=3 SV=1
Length = 459
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSR-------CKVIDVL---DKGKH 51
R+F + LG D + + E+ +T+H+P P + ++ + KVID++ KG
Sbjct: 84 RIFDV-LGNPIDNAGPVESEEKMTIHRPAPAFDELAASQELLETGVKVIDLICPFAKGGK 142
Query: 52 AGLF 55
GLF
Sbjct: 143 VGLF 146
>sp|B2TK00|ATPB_CLOBB ATP synthase subunit beta OS=Clostridium botulinum (strain Eklund
17B / Type B) GN=atpD PE=3 SV=1
Length = 463
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKH 51
RLF + LGK D + + E+ +H+P P++ D + KVID+L +G
Sbjct: 89 RLFNV-LGKPIDNAGEVEAEEIYPIHRPAPSFKDQAVEPEMFETGIKVIDLLAPYQRGGK 147
Query: 52 AGLF 55
GLF
Sbjct: 148 IGLF 151
>sp|B2UZK0|ATPB_CLOBA ATP synthase subunit beta OS=Clostridium botulinum (strain Alaska
E43 / Type E3) GN=atpD PE=3 SV=1
Length = 463
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 2 RLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGD-------IVSRCKVIDVL---DKGKH 51
RLF + LGK D + + E+ +H+P P++ D + KVID+L +G
Sbjct: 89 RLFNV-LGKPIDNAGEVEAEEIYPIHRPAPSFKDQAVEPEMFETGIKVIDLLAPYQRGGK 147
Query: 52 AGLF 55
GLF
Sbjct: 148 IGLF 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.143 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,793,239
Number of Sequences: 539616
Number of extensions: 1216033
Number of successful extensions: 2244
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2234
Number of HSP's gapped (non-prelim): 23
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)