Query psy11114
Match_columns 88
No_of_seqs 108 out of 717
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:17:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02864 enoyl-CoA hydratase 99.8 1.6E-18 3.4E-23 131.5 11.4 74 6-79 83-158 (310)
2 PF13452 MaoC_dehydrat_N: N-te 99.7 4.7E-17 1E-21 107.5 9.2 63 8-70 66-132 (132)
3 PRK13691 (3R)-hydroxyacyl-ACP 99.5 3.7E-13 8.1E-18 94.4 11.9 71 8-78 75-146 (166)
4 PRK13692 (3R)-hydroxyacyl-ACP 99.4 3.3E-12 7.2E-17 88.9 12.2 76 8-83 75-151 (159)
5 cd03446 MaoC_like MoaC_like 98.9 1.3E-08 2.8E-13 67.4 9.4 59 17-75 78-139 (140)
6 cd03454 YdeM YdeM is a Bacillu 98.9 1.3E-08 2.9E-13 67.7 9.2 62 15-76 74-139 (140)
7 cd03452 MaoC_C MaoC_C The C-t 98.8 3.6E-08 7.8E-13 66.6 8.8 61 18-78 77-140 (142)
8 cd03451 FkbR2 FkbR2 is a Strep 98.7 1.5E-07 3.3E-12 62.6 9.4 61 18-78 80-144 (146)
9 cd03441 R_hydratase_like (R)-h 98.7 2.5E-07 5.4E-12 59.4 9.7 60 15-74 66-126 (127)
10 KOG1206|consensus 98.7 8.7E-10 1.9E-14 82.5 -2.7 74 4-77 53-127 (272)
11 cd03449 R_hydratase (R)-hydrat 98.7 4.8E-07 1.1E-11 58.4 10.5 59 15-75 68-127 (128)
12 cd03453 SAV4209_like SAV4209_l 98.5 1.2E-06 2.5E-11 57.8 9.1 59 14-74 67-126 (127)
13 PRK08190 bifunctional enoyl-Co 98.5 2E-06 4.3E-11 68.5 11.0 66 15-82 81-147 (466)
14 cd03455 SAV4209 SAV4209 is a S 98.5 2E-06 4.3E-11 56.3 9.3 54 18-74 68-122 (123)
15 cd03450 NodN NodN (nodulation 98.4 2.6E-06 5.6E-11 58.7 8.6 56 17-72 85-143 (149)
16 TIGR02278 PaaN-DH phenylacetic 98.1 1.7E-05 3.7E-10 65.7 8.3 58 19-76 601-661 (663)
17 PRK11563 bifunctional aldehyde 97.9 6.9E-05 1.5E-09 62.1 8.1 59 19-77 613-674 (675)
18 cd00586 4HBT 4-hydroxybenzoyl- 97.9 0.00055 1.2E-08 41.4 10.2 58 16-77 51-109 (110)
19 COG2030 MaoC Acyl dehydratase 97.9 0.00019 4.2E-09 49.6 9.0 60 16-75 93-153 (159)
20 cd03440 hot_dog The hotdog fol 97.7 0.0012 2.6E-08 37.0 9.6 57 14-74 42-99 (100)
21 TIGR02286 PaaD phenylacetic ac 97.6 0.00097 2.1E-08 43.0 9.3 55 17-75 57-112 (114)
22 cd03447 FAS_MaoC FAS_MaoC, the 97.6 0.0015 3.2E-08 43.6 9.6 54 15-74 68-123 (126)
23 PRK00006 fabZ (3R)-hydroxymyri 97.6 0.001 2.3E-08 44.6 8.8 59 16-78 88-146 (147)
24 PRK10800 acyl-CoA thioesterase 97.3 0.0047 1E-07 40.3 9.5 63 16-81 53-115 (130)
25 TIGR00369 unchar_dom_1 unchara 97.3 0.0039 8.3E-08 40.2 8.4 55 16-75 61-116 (117)
26 PF13279 4HBT_2: Thioesterase- 97.1 0.011 2.5E-07 37.6 9.5 64 16-81 43-108 (121)
27 PRK11688 hypothetical protein; 97.1 0.0089 1.9E-07 40.8 9.5 56 16-76 97-153 (154)
28 cd03443 PaaI_thioesterase PaaI 97.1 0.016 3.5E-07 36.1 9.9 54 16-74 57-111 (113)
29 PRK04424 fatty acid biosynthes 97.1 0.0039 8.4E-08 44.3 7.8 56 17-76 126-181 (185)
30 cd01288 FabZ FabZ is a 17kD be 97.0 0.01 2.2E-07 38.3 8.4 55 17-75 75-129 (131)
31 COG0824 FcbC Predicted thioest 96.9 0.019 4.1E-07 38.7 9.2 63 17-83 57-119 (137)
32 TIGR01750 fabZ beta-hydroxyacy 96.8 0.011 2.3E-07 39.2 7.7 55 16-74 84-138 (140)
33 PF03061 4HBT: Thioesterase su 96.7 0.024 5.2E-07 33.0 7.9 50 15-68 29-79 (79)
34 cd03442 BFIT_BACH Brown fat-in 96.7 0.035 7.7E-07 34.9 9.0 56 23-80 57-116 (123)
35 TIGR02799 thio_ybgC tol-pal sy 96.6 0.044 9.5E-07 35.0 8.9 60 17-80 53-112 (126)
36 PF07977 FabA: FabA-like domai 96.5 0.014 3.1E-07 38.8 6.6 55 16-71 83-138 (138)
37 TIGR00051 acyl-CoA thioester h 96.5 0.056 1.2E-06 33.8 8.9 59 18-80 50-109 (117)
38 COG2050 PaaI HGG motif-contain 96.5 0.037 8E-07 37.0 8.4 55 21-79 84-139 (141)
39 cd00493 FabA_FabZ FabA/Z, beta 96.3 0.058 1.2E-06 34.5 8.3 51 16-71 75-126 (131)
40 PRK10293 acyl-CoA esterase; Pr 96.1 0.11 2.4E-06 35.2 9.4 57 16-76 79-135 (136)
41 PRK10254 thioesterase; Provisi 96.1 0.099 2.1E-06 35.6 9.1 57 16-76 79-135 (137)
42 COG3777 Uncharacterized conser 96.0 0.0049 1.1E-07 46.8 2.5 69 12-80 73-145 (273)
43 PF14539 DUF4442: Domain of un 95.9 0.067 1.5E-06 35.7 7.3 57 17-76 75-132 (132)
44 PF01575 MaoC_dehydratas: MaoC 95.8 0.036 7.7E-07 36.1 5.6 42 16-57 75-116 (122)
45 PRK07531 bifunctional 3-hydrox 95.8 0.11 2.3E-06 41.8 9.3 60 18-80 397-456 (495)
46 cd00556 Thioesterase_II Thioes 95.7 0.16 3.5E-06 30.9 8.1 54 17-74 43-97 (99)
47 cd01287 FabA FabA, beta-hydrox 95.5 0.13 2.9E-06 35.4 7.9 56 17-72 86-142 (150)
48 cd03448 HDE_HSD HDE_HSD The R 95.3 0.18 3.9E-06 33.4 7.7 48 18-72 71-118 (122)
49 PRK13188 bifunctional UDP-3-O- 95.1 0.16 3.4E-06 41.3 8.2 58 17-77 403-460 (464)
50 PLN02864 enoyl-CoA hydratase 94.9 0.21 4.6E-06 38.1 8.1 52 20-78 256-307 (310)
51 PLN02322 acyl-CoA thioesterase 94.7 0.71 1.5E-05 32.2 9.5 58 16-77 70-134 (154)
52 PRK13693 (3R)-hydroxyacyl-ACP 94.5 0.5 1.1E-05 32.0 8.4 49 21-71 82-136 (142)
53 cd01289 FabA_like Domain of un 92.7 1.8 4E-05 28.9 8.6 59 16-77 78-137 (138)
54 PRK05174 3-hydroxydecanoyl-(ac 92.4 1.7 3.7E-05 30.6 8.4 53 17-70 105-158 (172)
55 TIGR02447 yiiD_Cterm thioester 90.7 0.69 1.5E-05 31.1 4.8 57 16-76 69-136 (138)
56 TIGR01749 fabA beta-hydroxyacy 90.0 2.5 5.3E-05 29.7 7.3 53 17-70 102-155 (169)
57 PLN02370 acyl-ACP thioesterase 89.7 5.5 0.00012 32.1 9.9 60 17-80 197-258 (419)
58 PF01643 Acyl-ACP_TE: Acyl-ACP 88.7 6.5 0.00014 28.8 9.1 59 18-80 62-122 (261)
59 TIGR00189 tesB acyl-CoA thioes 87.3 4.9 0.00011 29.2 7.6 53 16-71 213-265 (271)
60 COG0764 FabA 3-hydroxymyristoy 86.2 9 0.0002 26.5 8.1 55 16-73 86-140 (147)
61 PRK10694 acyl-CoA esterase; Pr 86.0 8.2 0.00018 25.9 7.7 26 23-48 61-86 (133)
62 COG1607 Acyl-CoA hydrolase [Li 85.1 11 0.00023 26.6 8.1 25 22-46 62-86 (157)
63 cd03444 Thioesterase_II_repeat 82.5 10 0.00022 24.1 7.0 54 15-71 46-99 (104)
64 PF02551 Acyl_CoA_thio: Acyl-C 82.4 6.5 0.00014 27.0 5.9 49 19-70 77-126 (131)
65 PF14765 PS-DH: Polyketide syn 81.6 14 0.0003 26.5 7.8 58 11-72 224-283 (295)
66 PRK10526 acyl-CoA thioesterase 79.6 13 0.00028 27.8 7.3 52 18-72 227-278 (286)
67 PLN02647 acyl-CoA thioesterase 75.5 28 0.0006 28.2 8.4 57 22-78 339-402 (437)
68 PF09500 YiiD_Cterm: Putative 73.6 27 0.00058 24.1 8.0 66 10-76 70-142 (144)
69 PF01643 Acyl-ACP_TE: Acyl-ACP 70.2 40 0.00087 24.7 8.7 50 21-72 208-257 (261)
70 PLN02647 acyl-CoA thioesterase 69.9 51 0.0011 26.8 8.7 56 22-80 150-212 (437)
71 COG1946 TesB Acyl-CoA thioeste 69.7 25 0.00055 27.2 6.7 56 13-71 222-277 (289)
72 PLN02868 acyl-CoA thioesterase 69.2 24 0.00053 27.5 6.7 51 18-71 358-408 (413)
73 PF10862 FcoT: FcoT-like thioe 68.9 19 0.00042 25.6 5.5 52 14-66 93-148 (157)
74 PF13622 4HBT_3: Thioesterase- 65.0 47 0.001 23.5 7.1 55 21-80 38-92 (255)
75 KOG3328|consensus 60.5 57 0.0012 23.0 7.9 63 15-80 80-143 (148)
76 PRK07217 replication factor A; 54.6 59 0.0013 25.4 6.3 46 28-73 76-122 (311)
77 KOG3287|consensus 51.1 64 0.0014 24.3 5.8 37 8-44 30-66 (236)
78 TIGR02813 omega_3_PfaA polyket 50.4 80 0.0017 31.2 7.5 56 22-81 2521-2577(2582)
79 PHA02732 hypothetical protein; 48.3 91 0.002 28.2 7.0 71 12-83 154-238 (1467)
80 TIGR02588 conserved hypothetic 43.6 1E+02 0.0022 21.0 8.1 52 31-83 59-111 (122)
81 PTZ00491 major vault protein; 41.8 1.7E+02 0.0037 26.0 7.7 67 12-78 77-147 (850)
82 COG5496 Predicted thioesterase 40.2 1.2E+02 0.0027 20.9 8.7 58 18-79 59-116 (130)
83 PF06281 DUF1035: Protein of u 37.9 16 0.00034 22.8 0.7 14 70-83 27-40 (73)
84 PF13622 4HBT_3: Thioesterase- 32.9 1.8E+02 0.0038 20.5 9.4 53 20-75 201-254 (255)
85 COG3332 Uncharacterized conser 32.7 22 0.00048 27.1 1.0 19 70-88 214-232 (270)
86 PHA00739 V3 structural protein 32.4 26 0.00056 22.7 1.1 14 69-82 45-58 (92)
87 cd04316 ND_PkAspRS_like_N ND_P 31.3 1.4E+02 0.003 18.8 5.5 31 32-65 11-41 (108)
88 PF01170 UPF0020: Putative RNA 30.7 22 0.00049 24.6 0.7 16 71-86 106-121 (179)
89 KOG1730|consensus 30.2 65 0.0014 23.7 3.0 47 1-50 100-146 (206)
90 cd00421 intradiol_dioxygenase 29.9 74 0.0016 21.5 3.1 31 49-79 7-38 (146)
91 PF01835 A2M_N: MG2 domain; I 29.3 1.4E+02 0.0029 18.1 6.8 46 26-72 6-55 (99)
92 cd04317 EcAspRS_like_N EcAspRS 27.7 1.4E+02 0.0031 19.4 4.2 27 30-56 11-37 (135)
93 PF03658 Ub-RnfH: RnfH family 27.1 39 0.00084 21.5 1.2 20 13-32 57-76 (84)
94 COG0116 Predicted N6-adenine-s 25.3 38 0.00083 27.1 1.2 14 71-84 299-312 (381)
95 PF03756 AfsA: A-factor biosyn 24.7 2E+02 0.0043 18.5 8.6 58 17-74 72-130 (132)
96 TIGR03615 RutF pyrimidine util 24.5 2.3E+02 0.005 19.2 6.3 32 28-59 104-135 (156)
97 TIGR02296 HpaC 4-hydroxyphenyl 24.4 2.3E+02 0.005 19.1 6.4 40 28-67 101-143 (154)
98 PRK06386 replication factor A; 23.8 3.2E+02 0.007 21.6 6.1 43 30-72 8-56 (358)
99 PRK06461 single-stranded DNA-b 22.5 2.4E+02 0.0052 18.6 4.9 47 26-72 6-59 (129)
100 PF10648 Gmad2: Immunoglobulin 21.3 2.2E+02 0.0048 17.7 5.8 54 24-83 3-59 (88)
101 PF10989 DUF2808: Protein of u 21.0 1.4E+02 0.0029 20.2 3.1 22 22-43 91-112 (146)
102 KOG1511|consensus 20.6 93 0.002 25.2 2.5 28 15-42 12-40 (397)
No 1
>PLN02864 enoyl-CoA hydratase
Probab=99.78 E-value=1.6e-18 Score=131.51 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=69.8
Q ss_pred cccCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-EC-CCCCeEEEeEEeEEeeCC
Q psy11114 6 IYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RD-QSRYAISKFTVPLFPHDP 79 (88)
Q Consensus 6 ~~p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d-~~Ge~V~~~~~~l~~~~~ 79 (88)
.+|+++||+.++|||||+|++||||+++++|+++.+|++++|||||++++++.. +| ++|++|+++++|+|.+..
T Consensus 83 ~~p~~~~d~~~lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 83 DLPGLNYDPSLLLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred cCCCCCCChhheeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 578899999999999999999999999999999999999999999999999976 67 699999999999999975
No 2
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=99.72 E-value=4.7e-17 Score=107.52 Aligned_cols=63 Identities=30% Similarity=0.429 Sum_probs=54.3
Q ss_pred cCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEec---CCcEEEEEEEE-ECCCCCeEEEe
Q psy11114 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDK---GKHAGLFSTLV-RDQSRYAISKF 70 (88)
Q Consensus 8 p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~Dk---Gkgalv~~~~~-~d~~Ge~V~~~ 70 (88)
+++++|+.++|||+|+++|||||++||+|+++++|+++++| |++.+++++.+ +|++|++|+|+
T Consensus 66 ~~~~~~~~~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t~ 132 (132)
T PF13452_consen 66 PDLGFDLTRLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVATQ 132 (132)
T ss_dssp GCCSS-GGGEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE-
T ss_pred ecCCCChhhEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEeC
Confidence 67799999999999999999999999999999999999999 57888888877 89999999985
No 3
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.51 E-value=3.7e-13 Score=94.43 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=63.4
Q ss_pred cCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEeeC
Q psy11114 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPHD 78 (88)
Q Consensus 8 p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~~ 78 (88)
..++++..+++|++|+++|+||+.+||+|+++.+|.++.+|+++.++..+.. +|++|++|++.+.+++.+.
T Consensus 75 ~~~g~~~~~~v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~~ 146 (166)
T PRK13691 75 VDVGMETMQIVQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMGQQ 146 (166)
T ss_pred cccCCCcceeeeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEEec
Confidence 3467888889999999999999999999999999999988776667777766 8999999999999999875
No 4
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.44 E-value=3.3e-12 Score=88.90 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=67.4
Q ss_pred cCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEeeCCCCcc
Q psy11114 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPHDPSYGE 83 (88)
Q Consensus 8 p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~~~~~~~ 83 (88)
++++++..+.+|++|+++|++|+.+||+|+++.+|.++.++++..+++.+.. ++++|++|++.+++++.++=.-++
T Consensus 75 ~~l~~~~~~~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~~~~~~~r~~~~~~ 151 (159)
T PRK13692 75 ANIAVADAQIVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQETYTTLAGRAGEDGE 151 (159)
T ss_pred ccCCCCccceEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEEEEEEEEecCCcCC
Confidence 6678888899999999999999999999999999999987766677787765 899999999999999999876554
No 5
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.93 E-value=1.3e-08 Score=67.36 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=51.4
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecC--CcEEEEEEEE-ECCCCCeEEEeEEeEE
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG--KHAGLFSTLV-RDQSRYAISKFTVPLF 75 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkG--kgalv~~~~~-~d~~Ge~V~~~~~~l~ 75 (88)
..+|.|+++|++|+.+||+|+++.+|.++.++. +..++..+.. ++++|++|++.+.++.
T Consensus 78 ~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~l 139 (140)
T cd03446 78 AFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGEMSLL 139 (140)
T ss_pred EEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEEEeee
Confidence 468999999999999999999999999998774 3467777766 8999999999998875
No 6
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.93 E-value=1.3e-08 Score=67.70 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=53.2
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEec---CCcEEEEEEEE-ECCCCCeEEEeEEeEEe
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDK---GKHAGLFSTLV-RDQSRYAISKFTVPLFP 76 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~Dk---Gkgalv~~~~~-~d~~Ge~V~~~~~~l~~ 76 (88)
....+|.|+++|++|+.+||+|+++.+|.+++++ ++..++.++.. +|++|++|++.+.++.+
T Consensus 74 ~~~~~~~~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~~~~~~ 139 (140)
T cd03454 74 SGGSPGIDELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFEATVLV 139 (140)
T ss_pred EEEEcceeeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEEehhee
Confidence 4578899999999999999999999999999975 23456777766 89999999999998875
No 7
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=98.83 E-value=3.6e-08 Score=66.63 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=52.4
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecC--CcEEEEEEEE-ECCCCCeEEEeEEeEEeeC
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG--KHAGLFSTLV-RDQSRYAISKFTVPLFPHD 78 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkG--kgalv~~~~~-~d~~Ge~V~~~~~~l~~~~ 78 (88)
-||.|+++|++|+.+||+|+++.+|.++.+|. +..++.++.. .+++|+.|++++.++.+..
T Consensus 77 ~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~ 140 (142)
T cd03452 77 NYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYDILTLVAK 140 (142)
T ss_pred EeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEEehHeeEe
Confidence 38999999999999999999999999999764 3467777765 8999999999998877654
No 8
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.74 E-value=1.5e-07 Score=62.61 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=51.8
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEec---CCcEEEEEEEE-ECCCCCeEEEeEEeEEeeC
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDK---GKHAGLFSTLV-RDQSRYAISKFTVPLFPHD 78 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~Dk---Gkgalv~~~~~-~d~~Ge~V~~~~~~l~~~~ 78 (88)
..|.++++|++|+.+||+|+++.+|++++++ ++..++..+.+ .+++|++|++++.++.+..
T Consensus 80 ~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~~~~ 144 (146)
T cd03451 80 NLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTALVPK 144 (146)
T ss_pred ccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhEEEc
Confidence 4677899999999999999999999999975 24567777766 7899999999999987653
No 9
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.72 E-value=2.5e-07 Score=59.41 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=51.1
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeE
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPL 74 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l 74 (88)
...++++++++|++|+.+||+|+++.+|.+..++.+..++.++.. ++++|++++..+.++
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g~~~~ 126 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLSGEATV 126 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEEEEEEe
Confidence 568999999999999999999999999999998864445666655 889999999977654
No 10
>KOG1206|consensus
Probab=98.70 E-value=8.7e-10 Score=82.50 Aligned_cols=74 Identities=34% Similarity=0.464 Sum_probs=66.2
Q ss_pred cccccCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEee
Q psy11114 4 FPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPH 77 (88)
Q Consensus 4 ~~~~p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~ 77 (88)
.+..+.-++|+.+++||||+++...++|.++.+.+..++.++.|||+|++++...+ +|++|..++.+.++-|.+
T Consensus 53 ~~~~~~d~~~~~~~lhgeqy~e~~~~l~~~g~l~t~~~~~~v~dkg~~a~v~~~~et~d~~~k~i~~~~~stf~~ 127 (272)
T KOG1206|consen 53 LMDNLVDNFDYAMLLHGEQYFELCTTLPSNGTLKTLAKVLDVLDKGSGALVVGNFETYDETGKLIAYNQGSTFIR 127 (272)
T ss_pred HhhccchhHHHHHHHHHHHHHHHHccccccchhhhcceeEEeccCcceeEEEeeeeeecccccchhhhcCceeEe
Confidence 34556668999999999999999999999999999999999999999999999976 899999999988776654
No 11
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.69 E-value=4.8e-07 Score=58.36 Aligned_cols=59 Identities=12% Similarity=0.090 Sum_probs=49.7
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEE
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLF 75 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~ 75 (88)
...++++++++|++|+.+||+|+++.+|.++.++ ++ ++..+.. ++++|++|++++.+++
T Consensus 68 ~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~-~~-~v~~~~~~~~~~g~~v~~g~~~~~ 127 (128)
T cd03449 68 PGTIYLSQSLRFLRPVFIGDTVTATVTVTEKRED-KK-RVTLETVCTNQNGEVVIEGEAVVL 127 (128)
T ss_pred ceEEEEEEEEEECCCccCCCEEEEEEEEEEEecC-CC-EEEEEEEEEeCCCCEEEEEEEEEe
Confidence 4678999999999999999999999999999764 23 4455544 7889999999999886
No 12
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.54 E-value=1.2e-06 Score=57.82 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=48.3
Q ss_pred cceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeE
Q psy11114 14 LSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPL 74 (88)
Q Consensus 14 ~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l 74 (88)
+..++ ++.++|++|+.+||+|+++.+|++++++++..++..+.. ++++|+.|++.+.++
T Consensus 67 ~~~i~--~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g~a~v 126 (127)
T cd03453 67 PGRVV--SFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVLGRAIV 126 (127)
T ss_pred ccceE--EEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEEEEEE
Confidence 44553 577999999999999999999999988764456777765 899999999987654
No 13
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=98.49 E-value=2e-06 Score=68.54 Aligned_cols=66 Identities=11% Similarity=0.006 Sum_probs=56.7
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEeeCCCCc
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPHDPSYG 82 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~~~~~~ 82 (88)
...+|++|+++|++|+.+||+|+++.+|.+..+ +++ ++..+.. ++++|+.|++++.++....+.|-
T Consensus 81 ~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~-~~~-~v~~~~~~~nq~G~~V~~g~~~~l~~~~~~~ 147 (466)
T PRK08190 81 PGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDP-EKR-IVVLDCRCTNQDGEVVITGTAEVIAPTEKVR 147 (466)
T ss_pred cceEEEEEEEEEeCCcCCCCEEEEEEEEEEEEC-CCC-EEEEEEEEEeCCCCEEEEEEEEeeccccccc
Confidence 357899999999999999999999999998764 344 5556655 88999999999999999998886
No 14
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.49 E-value=2e-06 Score=56.32 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=45.4
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeE
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPL 74 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l 74 (88)
..++|+++|++|+.+||+|+++.+|.+..+ ++ ++.++.. +|++|+.|++.+.++
T Consensus 68 ~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~-~~--~v~~~~~~~nq~G~~v~~g~a~v 122 (123)
T cd03455 68 RVKSFAFRLGAPLYAGDTLRFGGRVTAKRD-DE--VVTVELWARNSEGDHVMAGTATV 122 (123)
T ss_pred eEEEEEEEeeccccCCCEEEEEEEEEeecc-Cc--EEEEEEEEEcCCCCEEEeEEEEE
Confidence 446789999999999999999999999754 33 7777766 899999999998775
No 15
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=98.41 E-value=2.6e-06 Score=58.71 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=47.4
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCc-EEEEEEEE--ECCCCCeEEEeEE
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKH-AGLFSTLV--RDQSRYAISKFTV 72 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkg-alv~~~~~--~d~~Ge~V~~~~~ 72 (88)
..+|+|+++|++|+.+||+|+++.+|.++.++.++ .+++++.+ ......|++.++-
T Consensus 85 ~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 143 (149)
T cd03450 85 VNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGEDKPACVAEW 143 (149)
T ss_pred EEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCCCceEEEEE
Confidence 45799999999999999999999999999999875 78888754 5566788887753
No 16
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=98.09 E-value=1.7e-05 Score=65.71 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=49.2
Q ss_pred EeeEEEEEecCcCCCCEEEEEEEEeEEEecCC--cEEEEEEEE-ECCCCCeEEEeEEeEEe
Q psy11114 19 HGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK--HAGLFSTLV-RDQSRYAISKFTVPLFP 76 (88)
Q Consensus 19 HGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk--galv~~~~~-~d~~Ge~V~~~~~~l~~ 76 (88)
||.|+++|++|+.+||+|+++.+|+++.++.+ ..+++++.. .+++|+.|++++.++-+
T Consensus 601 ~g~~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 601 YGLENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDVLTLV 661 (663)
T ss_pred cccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEEHHhc
Confidence 89999999999999999999999999987653 346777755 88999999999876544
No 17
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=97.88 E-value=6.9e-05 Score=62.08 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=49.2
Q ss_pred EeeEEEEEecCcCCCCEEEEEEEEeEEEecC--CcEEEEEEEE-ECCCCCeEEEeEEeEEee
Q psy11114 19 HGEQYLTLHQPLPTYGDIVSRCKVIDVLDKG--KHAGLFSTLV-RDQSRYAISKFTVPLFPH 77 (88)
Q Consensus 19 HGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkG--kgalv~~~~~-~d~~Ge~V~~~~~~l~~~ 77 (88)
.|-|.++|++|+.+||+|+++.+|.++.++. +..+++++.. ++++|+.|++++.++.+.
T Consensus 613 ~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~~~~lv~ 674 (675)
T PRK11563 613 YGLENLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYDILTLVA 674 (675)
T ss_pred cccceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEEEHHhcc
Confidence 4668999999999999999999999999774 3457777765 889999999998765543
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=97.87 E-value=0.00055 Score=41.43 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=44.8
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEee
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPH 77 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~ 77 (88)
..+-.++.++|++|++.|+++.+++++..+.. ........ .+++|+++|++.++...-
T Consensus 51 ~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~----~~~~~~~~~~~~~g~~~a~~~~~~~~~ 109 (110)
T cd00586 51 GLVVVELEIDYLRPLRLGDRLTVETRVLRLGR----KSFTFEQEIFREDGELLATAETVLVCV 109 (110)
T ss_pred eEEEEEeEeeEcCccCCCCEEEEEEEEEecCc----EEEEEEEEEECCCCeEEEEEEEEEEEe
Confidence 35668899999999999999999999999732 22334433 555899999998877654
No 19
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=97.86 E-value=0.00019 Score=49.59 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=50.5
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEE-EECCCCCeEEEeEEeEE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTL-VRDQSRYAISKFTVPLF 75 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~-~~d~~Ge~V~~~~~~l~ 75 (88)
..-.|.+.++|++|+.+||+|.+...+.+.+++.+..++.... ..++.|+.+.....+.-
T Consensus 93 ~~~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v~~~~~~~~ 153 (159)
T COG2030 93 GANLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQEGELVLTLEATVL 153 (159)
T ss_pred eeeccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEccCCcEEEEEEEeEe
Confidence 3578999999999999999999999999999998755555554 48899999998876643
No 20
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.74 E-value=0.0012 Score=37.03 Aligned_cols=57 Identities=9% Similarity=0.076 Sum_probs=45.2
Q ss_pred cceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeE
Q psy11114 14 LSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPL 74 (88)
Q Consensus 14 ~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l 74 (88)
......++.++.|++|++.|+.+..+.++.+...+ ....+.. .+++|++++++..+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 99 (100)
T cd03440 42 GLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRS----SVTVEVEVRNEDGKLVATATATF 99 (100)
T ss_pred CCeEEEEEEEeEEecCCCCCCEEEEEEEEEecccc----EEEEEEEEECCCCCEEEEEEEEe
Confidence 35678899999999999999999999999887544 3444444 667899999986653
No 21
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.65 E-value=0.00097 Score=43.03 Aligned_cols=55 Identities=7% Similarity=0.006 Sum_probs=42.8
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEE
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLF 75 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~ 75 (88)
.+-.+-.+.|+||.+.|+++.++.++. .+|+ .+.+.+.+ +|++|+++|+++.|+-
T Consensus 57 ~~t~~~~i~f~rp~~~G~~l~~~a~v~---~~g~-~~~~~~~~i~~~~~~~va~~~~t~~ 112 (114)
T TIGR02286 57 AVAAQCTIDFLRPGRAGERLEAEAVEV---SRGG-RTGTYDVEVVNQEGELVALFRGTSR 112 (114)
T ss_pred eEEEEEEEEEecCCCCCCEEEEEEEEE---EeCC-cEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 455677899999999999999998887 4444 33445544 7789999999998874
No 22
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=97.58 E-value=0.0015 Score=43.56 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=40.3
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCC-CCeEEEeEEeE
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQS-RYAISKFTVPL 74 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~-Ge~V~~~~~~l 74 (88)
..+++ ++++|.+|+.+||+++++.+|.+..+ | .+..+.. ++++ |+.|++.+.++
T Consensus 68 ~~~~~--~~~rf~~PV~~gdtl~~~~~v~~~~~-~---~~~~~~~~~nq~~g~~V~~g~~~v 123 (126)
T cd03447 68 SRVRS--FTASFVGMVLPNDELEVRLEHVGMVD-G---RKVIKVEARNEETGELVLRGEAEV 123 (126)
T ss_pred ceEEE--EEEEEcccCcCCCEEEEEEEEEEEeC-C---eEEEEEEEEECCCCCEEEEEEEEE
Confidence 34444 78999999999999999999998743 2 2233433 6777 99999987665
No 23
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=97.56 E-value=0.001 Score=44.58 Aligned_cols=59 Identities=7% Similarity=0.012 Sum_probs=45.6
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeC
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHD 78 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~ 78 (88)
..+-|-++++|++|+.+||+++++.++.... + .++..+...-.+|+.|++++.++...+
T Consensus 88 ~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~--~--~~v~~~~~~~~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 88 VYFAGIDKARFKRPVVPGDQLILEVELLKQR--R--GIWKFKGVATVDGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEeeeeEEEEccccCCCCEEEEEEEEEEee--C--CEEEEEEEEEECCEEEEEEEEEEEEEc
Confidence 3577889999999999999999999998663 2 244444442358999999999988754
No 24
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=97.33 E-value=0.0047 Score=40.32 Aligned_cols=63 Identities=8% Similarity=0.058 Sum_probs=48.3
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeCCCC
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHDPSY 81 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~~~~ 81 (88)
..+=-+.+++|++|+..||++.+++.+..+..+ .+...-...+++|++++++.++.+.-|+.-
T Consensus 53 ~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~---s~~~~~~i~~~~g~~~a~~~~~~v~~d~~~ 115 (130)
T PRK10800 53 AFVVRKMTVEYYAPARLDDMLEVQSEITSMRGT---SLTFTQRIVNAEGTLLNEAEVLIVCVDPLK 115 (130)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcE---EEEEEEEEEcCCCeEEEEEEEEEEEEECCC
Confidence 344558899999999999999999999998632 222221245678999999999999988753
No 25
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.26 E-value=0.0039 Score=40.21 Aligned_cols=55 Identities=11% Similarity=0.000 Sum_probs=42.0
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLF 75 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~ 75 (88)
..+=.+-++.|+||.+.| .+.++.++. .+|+ .+.+.+.. +|++|+++|+++++.-
T Consensus 61 ~~vt~~l~i~f~~p~~~g-~l~a~a~v~---~~gr-~~~~~~~~i~~~~g~~va~~~~t~~ 116 (117)
T TIGR00369 61 AVVGLELNANHLRPAREG-KVRAIAQVV---HLGR-QTGVAEIEIVDEQGRLCALSRGTTA 116 (117)
T ss_pred eEEEEEEEeeeccccCCC-EEEEEEEEE---ecCc-eEEEEEEEEECCCCCEEEEEEEEEc
Confidence 455567899999999888 999999876 3443 45555544 7889999999988753
No 26
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=97.13 E-value=0.011 Score=37.63 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=45.4
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEE--CCCCCeEEEeEEeEEeeCCCC
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVR--DQSRYAISKFTVPLFPHDPSY 81 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~--d~~Ge~V~~~~~~l~~~~~~~ 81 (88)
..+=.+.++.|++|+..+|++....++.++..+ ...+..+... ++.++++|+++++.+.-|...
T Consensus 43 ~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~--s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~~ 108 (121)
T PF13279_consen 43 GFVVAESEIDYLRPLRFGDRLEVETRVEEIGGK--SFRFEQEIFRPADGKGELAATGRTVMVFVDYKT 108 (121)
T ss_dssp EEEEEEEEEEE-S--BTTSEEEEEEEEEEEESS--EEEEEEEEEECSTTEEEEEEEEEEEEEEEETTT
T ss_pred eEEEEEEEEEEcccccCCCEEEEEEEEEEECCc--EEEEEEEEEEcCCCceEEEEEEEEEEEEEeCCC
Confidence 456788999999999999999999999876555 3333333334 444566999999999888765
No 27
>PRK11688 hypothetical protein; Provisional
Probab=97.12 E-value=0.0089 Score=40.80 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=43.7
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEe
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFP 76 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~ 76 (88)
.++=-+-.+.|.||. .|+.|.++.++.. +|| .+.+.+.+ +|++|+++|+++.+.++
T Consensus 97 ~~vTi~l~i~fl~p~-~g~~l~a~a~v~~---~g~-r~~~~~~~i~~~~g~lvA~a~~t~~v 153 (154)
T PRK11688 97 RLGTIDLRVDYLRPG-RGERFTATSSVLR---AGN-KVAVARMELHNEQGVHIASGTATYLV 153 (154)
T ss_pred cceEEEEEEEeeccC-CCCeEEEEEEEEE---ccC-CEEEEEEEEECCCCCEEEEEEEEEEe
Confidence 445668889999998 5899999999984 443 34455544 78899999999999875
No 28
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=97.11 E-value=0.016 Score=36.06 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=42.1
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPL 74 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l 74 (88)
..+=.+.++.|++|++. +.+.++.++... ++..+.++.. ++++|+++++++.++
T Consensus 57 ~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~----g~~~~~~~~~~~~~~~~~~a~a~~~~ 111 (113)
T cd03443 57 LAVTVDLNVNYLRPARG-GDLTARARVVKL----GRRLAVVEVEVTDEDGKLVATARGTF 111 (113)
T ss_pred ceEEEEEEEeEEcCCCC-CeEEEEEEEEec----CceEEEEEEEEECCCCCEEEEEEEEE
Confidence 34556789999999999 999999998765 3455666654 777899999997765
No 29
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=97.11 E-value=0.0039 Score=44.29 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=43.4
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEe
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFP 76 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~ 76 (88)
.+=+.+.+.|.+|+.+||.|.++.++..... + +..++.....+|+.|++++-+.+.
T Consensus 126 ~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~--~--~~~v~~~~~v~g~~V~ege~~~~~ 181 (185)
T PRK04424 126 ALTGVANIRFKRPVKLGERVVAKAEVVRKKG--N--KYIVEVKSYVGDELVFRGKFIMYR 181 (185)
T ss_pred EEEEeeeEEEccCCCCCCEEEEEEEEEEccC--C--EEEEEEEEEECCEEEEEEEEEEEE
Confidence 5678899999999999999999999994322 2 334444433679999999998877
No 30
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=97.00 E-value=0.01 Score=38.29 Aligned_cols=55 Identities=4% Similarity=-0.050 Sum_probs=41.2
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEE
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLF 75 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~ 75 (88)
.+-|-++++|++|+++|++++++.++....+ + .+..+.....+|+.+++++-++.
T Consensus 75 ~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~--~--~~~~~~~~~~~g~~v~~~~~~~~ 129 (131)
T cd01288 75 YFAGIDKARFRKPVVPGDQLILEVELLKLRR--G--IGKFKGKAYVDGKLVAEAELMFA 129 (131)
T ss_pred EEeeecccEEccccCCCCEEEEEEEEEEeeC--C--EEEEEEEEEECCEEEEEEEEEEE
Confidence 4667799999999999999999999987543 2 33333333456899999877664
No 31
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=96.86 E-value=0.019 Score=38.69 Aligned_cols=63 Identities=13% Similarity=0.059 Sum_probs=50.2
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeCCCCcc
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHDPSYGE 83 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~~~~~~ 83 (88)
.+=-+.++.|++|+..||.+..+.+++.+..+ .+...-.+++++ ++++++.++++--||+-+.
T Consensus 57 ~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~---s~~~~~~i~~~~-~l~a~~~~~~V~v~~~~~k 119 (137)
T COG0824 57 FVVVEAEIDYLRPARLGDVLTVRTRVEELGGK---SLTLGYEIVNED-ELLATGETTLVCVDLKTGK 119 (137)
T ss_pred EEEEEEEeEECCCccCCCEEEEEEEEEeecCe---EEEEEEEEEeCC-EEEEEEEEEEEEEECCCCC
Confidence 56678999999999999999999999987554 333333444554 9999999999999987664
No 32
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=96.83 E-value=0.011 Score=39.22 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=41.4
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPL 74 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l 74 (88)
..+-|-++++|++|+++||+|+++.++.... ++ ++..+.....+|+.+|+++.++
T Consensus 84 ~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~--~~--~~~~~~~~~~~g~~va~~~~~~ 138 (140)
T TIGR01750 84 VYFAGIDKAKFRRPVVPGDQLILHAEFLKKR--RK--IGKFKGEATVDGKVVAEAEITF 138 (140)
T ss_pred EEEeecceeEECCccCCCCEEEEEEEEEEcc--CC--EEEEEEEEEECCEEEEEEEEEE
Confidence 3678889999999999999999999988432 22 3333333346799999998765
No 33
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=96.72 E-value=0.024 Score=33.05 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=37.5
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEE
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAIS 68 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~ 68 (88)
...+=.+..+.|++|++.||.+.++.++..+-.+ .++.+.+ ++++++.+|
T Consensus 29 ~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~----~~~~~~~v~~~~~~~~~ 79 (79)
T PF03061_consen 29 RGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRK----SFTVEVEVYSEDGRLCA 79 (79)
T ss_dssp EEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESS----EEEEEEEEEETTSCEEE
T ss_pred cceEEEEEEEEEccccCCCeEEEEEEEEEEECCE----EEEEEEEEEECCCcEEC
Confidence 4466678899999999999999999999987655 3444433 667777765
No 34
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=96.68 E-value=0.035 Score=34.89 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=41.4
Q ss_pred EEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEE-C---CCCCeEEEeEEeEEeeCCC
Q psy11114 23 YLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVR-D---QSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 23 ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~-d---~~Ge~V~~~~~~l~~~~~~ 80 (88)
++.|++|++.||.|..+.++..+..+ -..+..+... + .++++++++..+++..|.+
T Consensus 57 ~~~f~~p~~~gd~l~i~~~v~~~g~~--~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~~~ 116 (123)
T cd03442 57 RIDFLKPVRVGDVVELSARVVYTGRT--SMEVGVEVEAEDPLTGERRLVTSAYFTFVALDED 116 (123)
T ss_pred ceEEcCccccCcEEEEEEEEEEecCC--eEEEEEEEEEecCCCCcEEEEEEEEEEEEEECCC
Confidence 89999999999999999999987332 2333333322 2 2467999999999888743
No 35
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=96.56 E-value=0.044 Score=35.02 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=45.4
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeCCC
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~~~ 80 (88)
.+=.+..++|++|+..||++...+++.++..+ ...+..+. . .+|+.+|++.++.+--|+.
T Consensus 53 ~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~--~~~~~~~i-~-~~g~~~a~~~~~~v~vd~~ 112 (126)
T TIGR02799 53 FVVRSMELDYLKPARLDDLLTVTTRVVELKGA--SLVFAQEV-R-RGDTLLCEATVEVACVDAS 112 (126)
T ss_pred EEEEEEEEEEcCcccCCCEEEEEEEEEecCce--EEEEEEEE-E-eCCEEEEEEEEEEEEEECC
Confidence 46668999999999999999999999886533 22222222 3 3689999999998888874
No 36
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=96.53 E-value=0.014 Score=38.77 Aligned_cols=55 Identities=5% Similarity=-0.010 Sum_probs=38.5
Q ss_pred eeEEeeEEEEEecCcCCCC-EEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeE
Q psy11114 16 QVLHGEQYLTLHQPLPTYG-DIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFT 71 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd-~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~ 71 (88)
..+-+-.+++|++|+.+|+ .|+.+.++..+++...+ +...+...--+|+.|++.+
T Consensus 83 ~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~-~~~~~~~~~vdg~~v~~~~ 138 (138)
T PF07977_consen 83 PFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGG-MAIFDGTAYVDGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETT-EEEEEEEEEETTEEEEEEE
T ss_pred EEeccccEEEECccEeCCCcEEEEEEEEEEeecccCC-EEEEEEEEEECCEEEEEEC
Confidence 4688999999999999999 99999999998555433 3334433334588888763
No 37
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=96.48 E-value=0.056 Score=33.76 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=42.5
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEE-EECCCCCeEEEeEEeEEeeCCC
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTL-VRDQSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~-~~d~~Ge~V~~~~~~l~~~~~~ 80 (88)
+=-+.++.|++|+..||++.+++++..+..+ -..... ..+++|+.++...++.+.-|+.
T Consensus 50 ~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~----s~~~~~~i~~~~~~~~~~~~~~~v~~d~~ 109 (117)
T TIGR00051 50 VVVNINIEYKKPARLDDVLEIRTQIEELNGF----SFVFSQEIFNEDEALLKAATVIVVCVDPK 109 (117)
T ss_pred EEEEEEEEECCcccCCCEEEEEEEEEecCcE----EEEEEEEEEeCCCcEEEeeEEEEEEEECC
Confidence 4557899999999999999999999997433 222332 3556677777777656566664
No 38
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.47 E-value=0.037 Score=37.02 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=42.3
Q ss_pred eEEEEEecCcCCCCEEEEEEEEeEEEecCC-cEEEEEEEEECCCCCeEEEeEEeEEeeCC
Q psy11114 21 EQYLTLHQPLPTYGDIVSRCKVIDVLDKGK-HAGLFSTLVRDQSRYAISKFTVPLFPHDP 79 (88)
Q Consensus 21 EQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk-galv~~~~~~d~~Ge~V~~~~~~l~~~~~ 79 (88)
+-.+.|.||...|+ ++++.++... |+ .++..++...|+.|+++|+++.|.++.++
T Consensus 84 ~l~i~flr~~~~g~-v~a~a~v~~~---G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~ 139 (141)
T COG2050 84 ELNINFLRPVKEGD-VTAEARVLHL---GRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRK 139 (141)
T ss_pred EEEehhccCCCCCe-EEEEEEEEee---CCEEEEEEEEEEECCCCeEEEEEEEEEEEecC
Confidence 55688999999999 9999999887 43 33333333357778999999999998765
No 39
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=96.31 E-value=0.058 Score=34.52 Aligned_cols=51 Identities=8% Similarity=-0.047 Sum_probs=39.1
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFT 71 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~ 71 (88)
..+=|-++++|++|+.+||+++++.++....+ + ++..+.. .. +|+.+++.+
T Consensus 75 ~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~--~--~~~~~~~~~~-~g~~v~~~~ 126 (131)
T cd00493 75 GYLAGVRKVKFRGPVLPGDTLTLEVELLKVRR--G--LGKFDGRAYV-DGKLVAEAE 126 (131)
T ss_pred EEEEEcceeEECCCcCCCCEEEEEEEEEEeeC--C--EEEEEEEEEE-CCEEEEEEE
Confidence 46778899999999999999999999997664 2 3333322 33 499999997
No 40
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.15 E-value=0.11 Score=35.17 Aligned_cols=57 Identities=11% Similarity=0.046 Sum_probs=41.4
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEe
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFP 76 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~ 76 (88)
+.+=-|-++.|.||...| .|+++.++.. +||-..+..-..+|++|+++|.++.|...
T Consensus 79 ~~vTiel~infl~p~~~g-~l~a~a~vv~---~Gr~~~~~~~~v~d~~g~l~A~~~~t~~i 135 (136)
T PRK10293 79 KVVGLEINANHVRSAREG-RVRGVCKPLH---LGSRHQVWQIEIFDEKGRLCCSSRLTTAI 135 (136)
T ss_pred eEEEEEEEeEEecccCCc-eEEEEEEEEe---cCCCEEEEEEEEEeCCCCEEEEEEEEEEE
Confidence 355567788899998755 7999998765 44434333334488999999999988753
No 41
>PRK10254 thioesterase; Provisional
Probab=96.11 E-value=0.099 Score=35.60 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=41.3
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEe
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFP 76 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~ 76 (88)
..+=-|-.+.|+||...| .|.++.++.. +||-..+.--..+|++|.++|.+++|+-+
T Consensus 79 ~~vTiel~in~Lrp~~~g-~l~a~a~vi~---~Gr~~~v~~~~v~d~~g~l~a~~~~t~~i 135 (137)
T PRK10254 79 CVVGTELNATHHRPVSEG-KVRGVCQPLH---LGRQNQSWEIVVFDEQGRRCCTCRLGTAV 135 (137)
T ss_pred eEEEEEEEeEEeccCcCC-eEEEEEEEEe---cCcCEEEEEEEEEcCCCCEEEEEEEEEEE
Confidence 355567778899998655 8999998654 44444333334488999999999998754
No 42
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.0049 Score=46.78 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=55.0
Q ss_pred CCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCC--cEEEEEE--EEECCCCCeEEEeEEeEEeeCCC
Q psy11114 12 FDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK--HAGLFST--LVRDQSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 12 ~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk--galv~~~--~~~d~~Ge~V~~~~~~l~~~~~~ 80 (88)
+++.+=+-++-.++||+||..|++.+|+.+|..|.+|-+ |.+..+. -.+.++|++-.+-.-+|+-+|++
T Consensus 73 ~~~~RRmWa~G~l~f~~pl~lgqe~t~~e~Iq~i~ek~g~~g~ltfvT~~h~~~~~~~l~l~Err~ivY~n~~ 145 (273)
T COG3777 73 LRYRRRMWAGGELVFHLPLRLGQEYTCHETIQYIEEKHGRSGELTFVTVPHVYSSPGQLCLFERRTIVYTNAP 145 (273)
T ss_pred cchhhhhhccceEEEecceecCceeehhHHHHHHHHhcccccceeEEeccceeccCcceeeeeeeeEEEecCC
Confidence 444555555557999999999999999999999999952 4444443 34778999999999999999986
No 43
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=95.88 E-value=0.067 Score=35.75 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=37.1
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEE-EECCCCCeEEEeEEeEEe
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTL-VRDQSRYAISKFTVPLFP 76 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~-~~d~~Ge~V~~~~~~l~~ 76 (88)
++--+-+++|+|| +.+.++++.++.+ .+.++..-..++. .+|.+|+.||+..-+++|
T Consensus 75 ~~~k~~~i~f~kp--a~g~v~a~~~~~~-e~~~~~~~~~~~v~i~D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 75 VWDKSAEIDFLKP--ARGDVTATAELTE-EQIGERGELTVPVEITDADGEVVAEATITWYV 132 (132)
T ss_dssp EEEEEEEEEE-S-----S-EEEEEE-TC-CHCCHEEEEEEEEEEEETTC-EEEEEEEEEEE
T ss_pred EEEEeeEEEEEec--cCCcEEEEEEcCH-HHhCCCcEEEEEEEEEECCCCEEEEEEEEEEC
Confidence 5567788999998 7788999999888 3334223344444 499999999999999886
No 44
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=95.81 E-value=0.036 Score=36.09 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=32.3
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFST 57 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~ 57 (88)
...-+.+.+.|.+|+.+||+|+++.++.+..+..+..-+++.
T Consensus 75 ~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~ 116 (122)
T PF01575_consen 75 PARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVT 116 (122)
T ss_dssp CEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEE
Confidence 356788999999999999999999999998887654444443
No 45
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.78 E-value=0.11 Score=41.82 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=46.6
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeCCC
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~~~ 80 (88)
+=.+.+++|++|+..||+++.++++.++..+ ...+.. ..++.+|+++++..++++.-|..
T Consensus 397 vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~--s~~~~~-~i~~~~g~l~A~g~~~~v~vD~~ 456 (495)
T PRK07531 397 YTVETHIRHLGEAKAGQALHVETQLLSGDEK--RLHLFH-TLYDAGGELIATAEHMLLHVDLK 456 (495)
T ss_pred EEEEEEEEEcccCCCCCEEEEEEEEEecCCc--EEEEEE-EEECCCCcEEEEEEEEEEEEECC
Confidence 3468999999999999999999999887443 222222 23567899999999999988864
No 46
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=95.74 E-value=0.16 Score=30.86 Aligned_cols=54 Identities=7% Similarity=0.099 Sum_probs=39.1
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEE-EEECCCCCeEEEeEEeE
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFST-LVRDQSRYAISKFTVPL 74 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~-~~~d~~Ge~V~~~~~~l 74 (88)
..-=+..+.||+|..+++.+.++.++.. .|++ +...+ ..++++|+++++.+.+.
T Consensus 43 ~~t~~~~i~F~~~~~~~~~~~~~~~~~~---~g~~-~~~~~~~i~~~~G~lva~~~~~~ 97 (99)
T cd00556 43 FASLDHHIYFHRPGDADEWLLYEVESLR---DGRS-RALRRGRAYQRDGKLVASATQSF 97 (99)
T ss_pred eeeeEEEEEEcCCCCCCccEEEEEEecc---cCCC-ceEEEEEEECCCCcEEEEEEEeE
Confidence 3445778999999999888888887754 2333 33444 44778899999997654
No 47
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=95.51 E-value=0.13 Score=35.45 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=43.7
Q ss_pred eEEeeEEEEEecCcCCCC-EEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEE
Q psy11114 17 VLHGEQYLTLHQPLPTYG-DIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTV 72 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd-~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~ 72 (88)
++=|-+.++|++|+.||| +|+.+.+|..+...+++.++..+....-+|+++++++.
T Consensus 86 ~l~~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~vdg~~v~~a~~ 142 (150)
T cd01287 86 APGGPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWVDGLRIYEAKD 142 (150)
T ss_pred EeccceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEECCEEEEEEEc
Confidence 566778899999999999 89999999999875555555666553347889988753
No 48
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=95.32 E-value=0.18 Score=33.40 Aligned_cols=48 Identities=4% Similarity=-0.090 Sum_probs=33.9
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEE
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTV 72 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~ 72 (88)
.-+.++++|.+|+.+||+|+++..+. ++ .+..+....++|+.++....
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~-----~~--~v~~~~~~~~~g~~v~~g~~ 118 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKE-----GN--RVIFQTKVVERDVVVLSNGA 118 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEe-----CC--EEEEEEEEccCCcEEEECCE
Confidence 34567999999999999999987732 22 44555544457888777643
No 49
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=95.14 E-value=0.16 Score=41.31 Aligned_cols=58 Identities=2% Similarity=-0.101 Sum_probs=44.3
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEee
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPH 77 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~ 77 (88)
.+=|-++++|++|+.+||+|+++.++..... + .++..+...-.+|+.||+++.++.+.
T Consensus 403 ~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~--~-giv~f~g~~~vdGelVaeael~~~v~ 460 (464)
T PRK13188 403 YFMKIDKVKFRQKVVPGDTLIFKVELLSPIR--R-GICQMQGKAYVNGKLVCEAELMAQIV 460 (464)
T ss_pred EEEeccEEEEcCCCCCCCEEEEEEEEEEEec--C-CEEEEEEEEEECCEEEEEEEEEEEEe
Confidence 5667789999999999999999999987443 2 24444433226899999999888764
No 50
>PLN02864 enoyl-CoA hydratase
Probab=94.90 E-value=0.21 Score=38.10 Aligned_cols=52 Identities=10% Similarity=-0.130 Sum_probs=37.9
Q ss_pred eeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeC
Q psy11114 20 GEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHD 78 (88)
Q Consensus 20 GEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~ 78 (88)
.+++++|.+|+.+||++.+... ..++ .+..+...+++|+.|.+...+|-+..
T Consensus 256 ~~~~~rF~~PV~pGdtl~~~~~-----~~~~--~v~~~~~~~~~g~~vl~G~a~~~~~~ 307 (310)
T PLN02864 256 KTISGRFLLHVYPGETLVTEMW-----LEGL--RVIYQTKVKERNKAVLSGYVDLRHLT 307 (310)
T ss_pred EEEEEEEcCCccCCCEEEEEEE-----eCCC--EEEEEEEEecCCeEEEEEEEEEeccc
Confidence 3689999999999999976553 2332 34444444688999999999987543
No 51
>PLN02322 acyl-CoA thioesterase
Probab=94.65 E-value=0.71 Score=32.23 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=41.4
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCC-cEEEEEEEEEC---C---CCCeEEEeEEeEEee
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK-HAGLFSTLVRD---Q---SRYAISKFTVPLFPH 77 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk-galv~~~~~~d---~---~Ge~V~~~~~~l~~~ 77 (88)
..+=-+-.+.|+||...|+.|.++.++.. +|+ -.+..++. +| + +|.++++++.|+-..
T Consensus 70 ~~vTiel~infLrpa~~G~~L~Aea~vv~---~Gr~~~~~ev~V-~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 70 RVAGIQLSINHLKSADLGDLVFAEATPVS---TGKTIQVWEVKL-WKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred ceEEEEEEEEEeccCCCCCEEEEEEEEEe---cCCCEEEEEEEE-EECCCCcccCCeEEEEEEEEEEEc
Confidence 45666778899999999999999998765 443 23333332 33 2 389999999999554
No 52
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=94.53 E-value=0.5 Score=31.98 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=32.1
Q ss_pred eEEEEEecCcCC-CC----EEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeE
Q psy11114 21 EQYLTLHQPLPT-YG----DIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFT 71 (88)
Q Consensus 21 EQ~~~~~rPLp~-gd----~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~ 71 (88)
++++.|.+|+.+ || +++++.+|+++.+ +++ ++.+... .++++..+.+.+
T Consensus 82 ~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~ 136 (142)
T PRK13693 82 EYNVRFTAVVPVPNDGKGAELVFNGRVKSVDP-ESK-SVTIALTATTGGKKIFGRAI 136 (142)
T ss_pred EEEEEecccEECCCCccceEEEEEEEEEEecc-CCc-EEEEEEEEEECCcEEEEEEE
Confidence 589999999975 44 9999999999964 333 3444433 444444444443
No 53
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=92.72 E-value=1.8 Score=28.94 Aligned_cols=59 Identities=7% Similarity=-0.046 Sum_probs=41.3
Q ss_pred eeEEeeEEEEEecCcCC-CCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEee
Q psy11114 16 QVLHGEQYLTLHQPLPT-YGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPH 77 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~-gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~ 77 (88)
..|=|=..++|++|..+ ||.|..+.++.....+ +.. ..+.+.-.+|+++|++.-++|.-
T Consensus 78 g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~-~~~--~~~~~~~v~~~~va~a~l~~~~p 137 (138)
T cd01289 78 GFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDS-GLG--VFECTIEDQGGVLASGRLNVYQP 137 (138)
T ss_pred EEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCC-cEE--EEEEEEEECCEEEEEEEEEEEcC
Confidence 36778899999999755 9999988887765431 223 33333223589999999888863
No 54
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=92.38 E-value=1.7 Score=30.63 Aligned_cols=53 Identities=8% Similarity=-0.071 Sum_probs=38.5
Q ss_pred eEEeeEEEEEecCcCCCCE-EEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEe
Q psy11114 17 VLHGEQYLTLHQPLPTYGD-IVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKF 70 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~-L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~ 70 (88)
.+=|-+.++|++|+.++|+ ++.+.+|..+... ++-+...+...--+|+.+|++
T Consensus 105 ~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~-~~~~~~~~~~i~v~g~~va~a 158 (172)
T PRK05174 105 RALGVGEVKFTGQVLPTAKKVTYEIDIKRVINR-KLVMGIADGRVLVDGEEIYTA 158 (172)
T ss_pred EEeeccEEEECccCcCCCEEEEEEEEEEEEecC-CCCEEEEEEEEEECCEEEEEE
Confidence 5667889999999999998 8999999987653 233334443322458899888
No 55
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=90.73 E-value=0.69 Score=31.08 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=37.0
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeE----------EEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEe
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVID----------VLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFP 76 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~----------V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~ 76 (88)
.++=-+-.+.|++|... + +.++.++.+ +..+||..+ +.+.+ + ++|+++|++..+.++
T Consensus 69 ~~vt~~~~i~yl~P~~~-~-~~a~~~~~~~~~~~~~~~~l~~~gr~~~-~~~~~v~-~~~~lvA~~~g~~~~ 136 (138)
T TIGR02447 69 DIVIADSHIRYLAPVTG-D-PVANCEAPDLESWEAFLATLQRGGKARV-KLEAQIS-SDGKLAATFSGEYVA 136 (138)
T ss_pred cEEEEEeeeEEcCCcCC-C-eEEEEEcCCHHHHHHHHHHHHhCCceEE-EEEEEEE-ECCEEEEEEEEEEEE
Confidence 45666788999999864 3 666666533 234445443 34433 5 467999999988765
No 56
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=89.98 E-value=2.5 Score=29.75 Aligned_cols=53 Identities=8% Similarity=-0.137 Sum_probs=36.9
Q ss_pred eEEeeEEEEEecCcCCCCEE-EEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEe
Q psy11114 17 VLHGEQYLTLHQPLPTYGDI-VSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKF 70 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L-~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~ 70 (88)
.+=|-++++|++|+.+||++ +.+.++..+....++ +...+...-.+|+++|++
T Consensus 102 ~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~-~~~~~~~i~v~g~~va~a 155 (169)
T TIGR01749 102 RALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLV-MGIADGEVLVDGRLIYTA 155 (169)
T ss_pred EEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCc-EEEEEEEEEECCEEEEEE
Confidence 45577899999999999986 888888887544223 344444422557888884
No 57
>PLN02370 acyl-ACP thioesterase
Probab=89.73 E-value=5.5 Score=32.07 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=46.4
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEE-EECC-CCCeEEEeEEeEEeeCCC
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTL-VRDQ-SRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~-~~d~-~Ge~V~~~~~~l~~~~~~ 80 (88)
-|-....++|+||..-||+++..+.+.++ ++ .....+. .+|. +|+.++++.|+.+.-|..
T Consensus 197 WVLtr~~I~~~R~P~~gD~V~V~Twv~~~---~k-~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD~~ 258 (419)
T PLN02370 197 WVVTRMQVLVDRYPTWGDVVQVDTWVSAS---GK-NGMRRDWLVRDCKTGETLTRASSVWVMMNKL 258 (419)
T ss_pred EEEEEEEEEeCcCCCCCCEEEEEEEEeeC---CC-CEEEEEEEEEECCCCeEEEEEEEEEEEEECC
Confidence 46778999999999999999999999886 22 2222343 3664 899999999988877753
No 58
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=88.73 E-value=6.5 Score=28.83 Aligned_cols=59 Identities=8% Similarity=-0.070 Sum_probs=40.7
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-EC-CCCCeEEEeEEeEEeeCCC
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RD-QSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d-~~Ge~V~~~~~~l~~~~~~ 80 (88)
+-....++++|+..-|++++.++.+.+.. +....-... +| ++|++++++.|.-+.-|..
T Consensus 62 vl~r~~i~i~r~P~~~e~i~i~Tw~~~~~----~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~ 122 (261)
T PF01643_consen 62 VLSRYQIEIHRYPRWGEKITIETWPSGFK----RFFAYRDFEIYDAEDGELLARATSIWVLIDLE 122 (261)
T ss_dssp EEEEEEEEESS--BTT-EEEEEEEEEEE-----SSEEEEEEEEE--TTS-EEEEEEEEEEEEETT
T ss_pred EEEEEEEEEEecCCCCCEEEEEEEeccCC----CcEEEEEEEEEECCCCcEEEEEEEEEEEEEhh
Confidence 56678999999988899999999998843 344444444 78 8999999997776666654
No 59
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=87.27 E-value=4.9 Score=29.17 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=33.2
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeE
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFT 71 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~ 71 (88)
...--+..+.||+|+++++=+-...+-... +.|--+......|++|++||+..
T Consensus 213 ~~aSldhtv~fh~~~~~~~W~l~~~~s~~~---~~Grg~~~~~l~d~~G~lvAs~~ 265 (271)
T TIGR00189 213 MAASLDHSIWFHRPFRADDWLLYKCSSPSA---SGSRGLVEGKIFTRDGVLIASTV 265 (271)
T ss_pred EEEeeeeeEEEeCCCCCCeeEEEEEEeccc---cCCceEEEEEEECCCCCEEEEEE
Confidence 344557889999997777744444333222 12333333455899999999975
No 60
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=86.20 E-value=9 Score=26.53 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=38.1
Q ss_pred eeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEe
Q psy11114 16 QVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVP 73 (88)
Q Consensus 16 ~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~ 73 (88)
-...|=+...|.+|+.|||.+....++...+-+ .+........-+|+.+++++-.
T Consensus 86 ~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~---~~~~~~~~a~Vdg~~v~~a~~~ 140 (147)
T COG0764 86 GYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRL---GIGKAKGVATVDGKVVAEAELL 140 (147)
T ss_pred EEEEEecceeecCccCCCCEEEEEEEEEEeccc---ceEEEEEEEEECCEEEEEEEEE
Confidence 357899999999999999998877777654322 2333334444567888887544
No 61
>PRK10694 acyl-CoA esterase; Provisional
Probab=86.03 E-value=8.2 Score=25.90 Aligned_cols=26 Identities=8% Similarity=0.126 Sum_probs=22.3
Q ss_pred EEEEecCcCCCCEEEEEEEEeEEEec
Q psy11114 23 YLTLHQPLPTYGDIVSRCKVIDVLDK 48 (88)
Q Consensus 23 ~~~~~rPLp~gd~L~~~~rV~~V~Dk 48 (88)
.+.|++|++.||.+.++.+|..+-.+
T Consensus 61 ~i~F~~Pv~~Gd~l~~~a~V~~~g~s 86 (133)
T PRK10694 61 GMTFLRPVAVGDVVCCYARCVKTGTT 86 (133)
T ss_pred ceEECCCcccCcEEEEEEEEEEccCc
Confidence 67999999999999999999765444
No 62
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=85.14 E-value=11 Score=26.62 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=21.7
Q ss_pred EEEEEecCcCCCCEEEEEEEEeEEE
Q psy11114 22 QYLTLHQPLPTYGDIVSRCKVIDVL 46 (88)
Q Consensus 22 Q~~~~~rPLp~gd~L~~~~rV~~V~ 46 (88)
.++.|.+|++.||.+.+..++..+.
T Consensus 62 d~v~F~~Pv~vGd~v~~~a~v~~~G 86 (157)
T COG1607 62 DSVDFKKPVRVGDIVCLYARVVYTG 86 (157)
T ss_pred ceEEEccccccCcEEEEEEEEeecC
Confidence 4788999999999999999987653
No 63
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=82.46 E-value=10 Score=24.11 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=31.7
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeE
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFT 71 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~ 71 (88)
....==++.+.||+|....+=+..+.+.... +.|--.......|++|++||+..
T Consensus 46 ~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~---~~gr~~~~~~l~~~~G~LvAs~~ 99 (104)
T cd03444 46 SASASLDHAIWFHRPFRADDWLLYEQRSPRA---GNGRGLVEGRIFTRDGELVASVA 99 (104)
T ss_pred cceEeeeEEEEEeCCCCCCceEEEEEECccc---cCCeeEEEEEEECCCCCEEEEEE
Confidence 3344557789999997764322222222111 13444444455899999999874
No 64
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=82.44 E-value=6.5 Score=27.04 Aligned_cols=49 Identities=8% Similarity=0.060 Sum_probs=27.4
Q ss_pred EeeEEEEEecCcCCCCEEEEE-EEEeEEEecCCcEEEEEEEEECCCCCeEEEe
Q psy11114 19 HGEQYLTLHQPLPTYGDIVSR-CKVIDVLDKGKHAGLFSTLVRDQSRYAISKF 70 (88)
Q Consensus 19 HGEQ~~~~~rPLp~gd~L~~~-~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~ 70 (88)
==++++-||||..+.+=+-.. ....+ .|+-.++.-+.-.+++|++||+.
T Consensus 77 SlDHs~wFHrpfr~ddWlLY~~~sp~A---~~~Rgl~~G~~f~~q~G~Lvas~ 126 (131)
T PF02551_consen 77 SLDHSMWFHRPFRADDWLLYAIESPSA---SGGRGLVRGRFFDTQDGELVASV 126 (131)
T ss_dssp EEEEEEEE-S--BTTS-EEEEEEEEEE---ETTEEEEEECCEEECTTEEEEEE
T ss_pred ecceeEEEcCCCCCCCCEEEEEEcCcc---ccCcccccCceEecCCCCEEEEE
Confidence 557899999999999844433 33333 22223333332237999999985
No 65
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=81.62 E-value=14 Score=26.47 Aligned_cols=58 Identities=7% Similarity=0.110 Sum_probs=41.0
Q ss_pred CCCcceeEEeeEEEEEec-CcCCCCEEEEEEEEeEEEecCCcEEEEEE-EEECCCCCeEEEeEE
Q psy11114 11 EFDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKGKHAGLFST-LVRDQSRYAISKFTV 72 (88)
Q Consensus 11 ~~d~~~vLHGEQ~~~~~r-PLp~gd~L~~~~rV~~V~DkGkgalv~~~-~~~d~~Ge~V~~~~~ 72 (88)
.-+...+-.+=+++.+++ |.+.++.+.+..+. ...++. .+... ..+|++|++++....
T Consensus 224 ~~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~dv~v~d~~G~~~~~~~g 283 (295)
T PF14765_consen 224 DRGRVFLPVSIERIRIFRAPPPPGDRLYVYARL---VKSDDD-TITGDVTVFDEDGRVVAELEG 283 (295)
T ss_dssp TTTSEEEEEEEEEEEESSS--SSTSEEEEEEEE---ESTTTT-EEEEEEEEEETTSBEEEEEEE
T ss_pred CCCCEEcccEeCEEEEEeccCCCCCEEEEEEEE---ecccce-EEEEEEEEECCCCCEEEEEcc
Confidence 344556778889999995 88999999999999 333333 33444 448899999998754
No 66
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=79.58 E-value=13 Score=27.81 Aligned_cols=52 Identities=8% Similarity=0.066 Sum_probs=33.3
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEE
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTV 72 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~ 72 (88)
.==++.+.||+|..+++=+-...+-... |.|--+..-..+|++|++||+..=
T Consensus 227 aSLdhsi~Fh~~~~~d~W~L~~~~s~~a---~~gr~~~~g~i~~~~G~LvAs~~Q 278 (286)
T PRK10526 227 ATIDHSMWFHRPFNLNEWLLYSVESTSA---SSARGFVRGEFYTQDGVLVASTVQ 278 (286)
T ss_pred EeeeEeEEEeCCCCCCceEEEEEECCcc---cCCceEEEEEEECCCCCEEEEEEe
Confidence 3447789999998877744444333221 233333444568999999998753
No 67
>PLN02647 acyl-CoA thioesterase
Probab=75.48 E-value=28 Score=28.25 Aligned_cols=57 Identities=7% Similarity=-0.033 Sum_probs=36.7
Q ss_pred EEEEEecCcCCCCEEEEEEEEeEEEec--CCc-EEEEEEEE-EC---CCCCeEEEeEEeEEeeC
Q psy11114 22 QYLTLHQPLPTYGDIVSRCKVIDVLDK--GKH-AGLFSTLV-RD---QSRYAISKFTVPLFPHD 78 (88)
Q Consensus 22 Q~~~~~rPLp~gd~L~~~~rV~~V~Dk--Gkg-alv~~~~~-~d---~~Ge~V~~~~~~l~~~~ 78 (88)
-.+.|++|++.|+.|..+++|.-.... |+- .-+.+... .+ .++++.+++--|.+..+
T Consensus 339 d~v~F~~PV~vGdil~l~A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d 402 (437)
T PLN02647 339 DHVDFLRPVDVGDFLRFKSCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRP 402 (437)
T ss_pred cceEecCccccCcEEEEEEEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEec
Confidence 468899999999999999999876554 221 11222222 22 35667777777765554
No 68
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=73.64 E-value=27 Score=24.12 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=33.3
Q ss_pred CCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEec-------CCcEEEEEEEEECCCCCeEEEeEEeEEe
Q psy11114 10 KEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDK-------GKHAGLFSTLVRDQSRYAISKFTVPLFP 76 (88)
Q Consensus 10 l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~Dk-------Gkgalv~~~~~~d~~Ge~V~~~~~~l~~ 76 (88)
.+++ ..++=.+-.++|++|+.-.=+.+|...=.+.+++ ++-+-+.++...-.+|+.+++++..-++
T Consensus 70 ~~~~-~~IVi~~~~i~Y~~Pv~~d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~~~~~~a~f~G~yv~ 142 (144)
T PF09500_consen 70 AGLN-GDIVIADSNIRYLKPVTGDFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYSGGELAAEFTGRYVA 142 (144)
T ss_dssp HT----EEEEEEEEEEE-S---S--EEEEE-------S---GGGGCTS-EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCCC-CcEEEEeCceEEcCCCCCCcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 3455 6788889999999998544355554442223332 3456666665533468889999887665
No 69
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=70.21 E-value=40 Score=24.66 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=31.4
Q ss_pred eEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEE
Q psy11114 21 EQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTV 72 (88)
Q Consensus 21 EQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~ 72 (88)
+-++.|.+.+..|+++.....+.. +.....+.....+++++|+.+|+..+
T Consensus 208 ~i~I~y~~E~~~gd~i~~~~~~~~--~~~~~~~~~~h~i~~~~g~~~~~~~~ 257 (261)
T PF01643_consen 208 SIDINYKKEIRYGDTITSYTEVEK--DEEEDGLSTLHEIRNEDGEEVARART 257 (261)
T ss_dssp EEEEEE-S--BTT-EEEEEEEEEE--ECCTTEEEEEEEEECT-TCEEEEEEE
T ss_pred EEEEEEccccCCCCEEEEEEEEcc--cccCCceEEEEEEEcCCCceEEEEEE
Confidence 567899999999999998877762 22234445555555555999999865
No 70
>PLN02647 acyl-CoA thioesterase
Probab=69.94 E-value=51 Score=26.75 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=39.1
Q ss_pred EEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEE-EEEE-EC-----CCCCeEEEeEEeEEeeCCC
Q psy11114 22 QYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLF-STLV-RD-----QSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 22 Q~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~-~~~~-~d-----~~Ge~V~~~~~~l~~~~~~ 80 (88)
..+.|++|+..|+.+....+|+-+ |+..+-+ ++.. .+ +.-.+++++.-|.+-.|+.
T Consensus 150 D~i~F~~Pi~~g~~v~l~g~Vt~v---GrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~~ 212 (437)
T PLN02647 150 DKIVLKKPIRVDVDLKIVGAVTWV---GRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDSK 212 (437)
T ss_pred CcEEEcCCCcCCcEEEEEEEEEEe---cCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcCC
Confidence 468899999999999999999886 4433333 2322 21 1334678888888888874
No 71
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=69.70 E-value=25 Score=27.21 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=38.0
Q ss_pred CcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeE
Q psy11114 13 DLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFT 71 (88)
Q Consensus 13 d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~ 71 (88)
+..++.-=++.+.||||++.+|=+-+..+.-...+- +| ++.....|.+|+++|+.-
T Consensus 222 ~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~-rg--l~~G~lf~r~G~LiA~~~ 277 (289)
T COG1946 222 PGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGG-RG--LVRGQLFDRDGQLIASVV 277 (289)
T ss_pred CcceEeeccceEEEeccccCCCEEEEEeeCCcccCC-cc--eeeeEEEcCCCCEEEEEe
Confidence 444555557899999999999977776666554433 11 222234789999999863
No 72
>PLN02868 acyl-CoA thioesterase family protein
Probab=69.23 E-value=24 Score=27.50 Aligned_cols=51 Identities=10% Similarity=0.074 Sum_probs=31.9
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeE
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFT 71 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~ 71 (88)
.-=++.+.||+|+.+.+=+-...+-... +.|--+..-..++++|++||+..
T Consensus 358 aSLdhsi~Fh~~~~~d~W~l~~~~s~~a---~~gr~~~~g~l~~~~G~LvAs~~ 408 (413)
T PLN02868 358 LSLDHSMWFHRPFRADDWLLFVIVSPAA---HNGRGFATGHMFNRKGELVVSLT 408 (413)
T ss_pred EEcceeEEEecCCCCCceEEEEEECCcc---CCCcceEEEEEECCCCCEEEEEE
Confidence 3445789999998777744444433322 22333333455899999999873
No 73
>PF10862 FcoT: FcoT-like thioesterase domain; InterPro: IPR022598 Proteins in this family have a HotDog fold. This family was formerly known as DUF2662. The structure of Rv0098 from M. tuberculosis [] suggested a thioesterase function. Assays showed that this protein was a thioesterase with a preference for long chain fatty acyl groups []. The maximal Kcat was observed for palmitoyl-CoA, although longer and shorter molecules were also cleaved. In solution this protein forms a homo-hexameric complex.; PDB: 2PFC_A 3B18_A.
Probab=68.95 E-value=19 Score=25.56 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=28.3
Q ss_pred cceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCc---EEEEEEEE-ECCCCCe
Q psy11114 14 LSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKH---AGLFSTLV-RDQSRYA 66 (88)
Q Consensus 14 ~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkg---alv~~~~~-~d~~Ge~ 66 (88)
++.+|-..-.-.|+||| .+-.+..+..+.++..+.+. .++.++.. .|++|..
T Consensus 93 LsdilI~~~~S~Frr~i-~~~~F~g~~~~~~~~~~~~~~~~l~l~t~~~F~D~~GG~ 148 (157)
T PF10862_consen 93 LSDILITSFKSRFRRPI-NPRHFSGELEVTDMRVRDRTWPYLFLSTECRFWDDDGGR 148 (157)
T ss_dssp HHHEEEEEE-EEE-S----TTSEEEEEEEE--EEE-SSS-EEEEEEEEEEE-----E
T ss_pred cCceeEeechhhhhccc-CcceEEEEEEEEEEEEeccCCceEEEeeEEEEEeCCCCc
Confidence 35578888889999998 46678888899999988876 44444444 7776654
No 74
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=65.02 E-value=47 Score=23.51 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=31.7
Q ss_pred eEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeCCC
Q psy11114 21 EQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 21 EQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~~~ 80 (88)
.-.+.|.+|.+++ .+..+.++.. .|| .+-..+.+.-++|.+++++++++-..++.
T Consensus 38 s~~~~fl~p~~~~-~~~~~v~~~r---~Gr-~~~~~~v~~~q~~~~~~~a~~~f~~~~~~ 92 (255)
T PF13622_consen 38 SLHVYFLRPVPPG-PVEYRVEVLR---DGR-SFSTRQVELSQDGKVVATATASFGRPEPG 92 (255)
T ss_dssp EEEEEESS--BSC-EEEEEEEEEE---ESS-SEEEEEEEEEETTEEEEEEEEEEE--TTT
T ss_pred EEEeEeccccccC-CEEEEEEEee---CCC-cEEEEEEEEEECCcCEEEEEEEEccCcCC
Confidence 3467899999999 7777776653 232 23333333345677888887776555543
No 75
>KOG3328|consensus
Probab=60.49 E-value=57 Score=22.95 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=45.6
Q ss_pred ceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCC-cEEEEEEEEECCCCCeEEEeEEeEEeeCCC
Q psy11114 15 SQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK-HAGLFSTLVRDQSRYAISKFTVPLFPHDPS 80 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk-galv~~~~~~d~~Ge~V~~~~~~l~~~~~~ 80 (88)
...+-.+-.+.|.+|-+.|+.|..++++..+ || .++..++-..-.+|+..+...-+.+..|-+
T Consensus 80 ~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~---Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~ 143 (148)
T KOG3328|consen 80 KPGVSVDLSVSYLSSAKLGEELEIEATVVRV---GKTLAFTDVELRRKSTGKIIAKGRHTKYFRPAS 143 (148)
T ss_pred CCceEEEEEhhhccccCCCCeEEEEEEEeec---CceEEEEEEEEEEcCCCeEEEecceEEEeecCC
Confidence 3455667788899999999999999988754 33 343334433446899999999888877654
No 76
>PRK07217 replication factor A; Reviewed
Probab=54.63 E-value=59 Score=25.43 Aligned_cols=46 Identities=9% Similarity=-0.039 Sum_probs=38.2
Q ss_pred cCcC-CCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEe
Q psy11114 28 QPLP-TYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVP 73 (88)
Q Consensus 28 rPLp-~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~ 73 (88)
+-|. .++.+..+.+|..+|++....+......-|++|..-.|.|..
T Consensus 76 ~Di~~~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG~IkfT~W~~ 122 (311)
T PRK07217 76 ADIDEPEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETGTIKFTKWAK 122 (311)
T ss_pred eecCCCCCcEEEEEEEEEecCCCCCceEEEEEEEcCCceEEEEEccC
Confidence 3454 456899999999999998888888777799999998888774
No 77
>KOG3287|consensus
Probab=51.13 E-value=64 Score=24.34 Aligned_cols=37 Identities=19% Similarity=0.379 Sum_probs=32.2
Q ss_pred cCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeE
Q psy11114 8 LGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVID 44 (88)
Q Consensus 8 p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~ 44 (88)
|...+|++-.+-.++.==|++|.|.+.++.+.-.+++
T Consensus 30 pa~d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~ 66 (236)
T KOG3287|consen 30 PADDYDFTVMIPAGKTECFYQPVPQGATLEVEYQVID 66 (236)
T ss_pred cccccceEEEecCCCceeeeeeccCCeEEEEEEEEEe
Confidence 4457888888999998889999999999999988877
No 78
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=50.43 E-value=80 Score=31.17 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=42.6
Q ss_pred EEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEeeCCCC
Q psy11114 22 QYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPHDPSY 81 (88)
Q Consensus 22 Q~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~~~~~ 81 (88)
.+++.|+|++.++.+.+..+|....+. -++.... .|++|.+++++..-=++-+|+.
T Consensus 2521 ~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~d~~~~~~~g~~~~~~~~~~~~~~~~l 2577 (2582)
T TIGR02813 2521 GEFVSYRPVSLGEKFYLKLDVVKSSGR----SLVANIELYHQDGRLSSEMKSAKVTISKNL 2577 (2582)
T ss_pred ceEEEecCCCCCCceEEEEEEEeccCC----eEEEEEEEECCCCcEEEEEeCCeEEECHHH
Confidence 578999999999999999988887433 3344444 8999999999877666666653
No 79
>PHA02732 hypothetical protein; Provisional
Probab=48.27 E-value=91 Score=28.15 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=48.8
Q ss_pred CCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCC-----cEEEEEEEE----EC--CCCCe--EEEe-EEeEEee
Q psy11114 12 FDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK-----HAGLFSTLV----RD--QSRYA--ISKF-TVPLFPH 77 (88)
Q Consensus 12 ~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk-----galv~~~~~----~d--~~Ge~--V~~~-~~~l~~~ 77 (88)
+|-...=||+|++.|. =.|+..++.++.+|++--+.++ |.++.-... .| ++|-. .++. ...||.|
T Consensus 154 ~N~~~a~~~GQYIAW~-f~P~s~T~NVTIHitS~Ps~~~npysPGIvIYspN~g~q~~Di~~SgF~ALlVtFyng~IWyH 232 (1467)
T PHA02732 154 FNCPAAPAGGQYIAWR-FTPPSNTFNVTIHITSWPSGIGNPYSPGIAIYSPNVGDQPTDIGASGFLALLVDFYNGGIFYH 232 (1467)
T ss_pred EecCCCCCCccEEEEE-EcCCCceEEEEEEEEeccCCCCCCCCCceEEECCCCCCCccccccCceEEEEEEecCCcEEEE
Confidence 3444556899999987 5678899999999999887763 555554432 45 33432 2333 4569999
Q ss_pred CCCCcc
Q psy11114 78 DPSYGE 83 (88)
Q Consensus 78 ~~~~~~ 83 (88)
+||-|-
T Consensus 233 ~ps~gw 238 (1467)
T PHA02732 233 EPNGGW 238 (1467)
T ss_pred CCCCCc
Confidence 999664
No 80
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=43.56 E-value=1e+02 Score=20.96 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=32.3
Q ss_pred CCCCEEEEEEEEeEEEecCCcEEEEEEEEEC-CCCCeEEEeEEeEEeeCCCCcc
Q psy11114 31 PTYGDIVSRCKVIDVLDKGKHAGLFSTLVRD-QSRYAISKFTVPLFPHDPSYGE 83 (88)
Q Consensus 31 p~gd~L~~~~rV~~V~DkGkgalv~~~~~~d-~~Ge~V~~~~~~l~~~~~~~~~ 83 (88)
.-|+.--...+|.+...-+.+..-..+...| -.|.--++. +=+|.+||.-|+
T Consensus 59 N~gg~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G-~~IF~~dP~~g~ 111 (122)
T TIGR02588 59 NLGGTTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENG-TLIFRSDPRNGQ 111 (122)
T ss_pred eCCCcEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeE-EEEEccCcccCe
Confidence 3466666666777666665554444444445 244444555 668999999876
No 81
>PTZ00491 major vault protein; Provisional
Probab=41.81 E-value=1.7e+02 Score=26.04 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=39.9
Q ss_pred CCcceeEEeeEEEEEec---CcCCCCEEEEEEEEeEEEecCCcEEEEEEEE-ECCCCCeEEEeEEeEEeeC
Q psy11114 12 FDLSQVLHGEQYLTLHQ---PLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV-RDQSRYAISKFTVPLFPHD 78 (88)
Q Consensus 12 ~d~~~vLHGEQ~~~~~r---PLp~gd~L~~~~rV~~V~DkGkgalv~~~~~-~d~~Ge~V~~~~~~l~~~~ 78 (88)
+.-.++-||++++.|++ |+.||.++.....-.-|...+.+..+..... +|.+|..-..+.-=||-.-
T Consensus 77 ~gq~klr~G~~EiR~~q~PfplyPgE~l~~~v~~l~VI~~n~ALrLrAl~df~D~~Gv~RvAGEeWL~~gP 147 (850)
T PTZ00491 77 YGQVKVRHGEREIRFSQDPFPLYPGEKLVTQVEPLKVLPANEALRVRALRDFTVEDGVRRVAGEEWLFKGP 147 (850)
T ss_pred CCcEEeccccEEEEccCCCcCcCCCeEEeecceeeEEECCCceEEEEEeceEEcCCCcEEecCcEEEEECC
Confidence 44567899999999998 5568866655322222333333333333333 6767776666666666543
No 82
>COG5496 Predicted thioesterase [General function prediction only]
Probab=40.17 E-value=1.2e+02 Score=20.87 Aligned_cols=58 Identities=9% Similarity=-0.048 Sum_probs=42.8
Q ss_pred EEeeEEEEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEEeeCC
Q psy11114 18 LHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLFPHDP 79 (88)
Q Consensus 18 LHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~~~~~ 79 (88)
|=.|-.+.-..|.|+|.+++...++..+.-|+ +....+..+.|+.+.+.+.+=|+-|+
T Consensus 59 VG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~----v~f~i~a~~~~~~Ig~g~h~R~iv~~ 116 (130)
T COG5496 59 VGTEVLVRHLAATPPGLTVTIGARLEKVEGRK----VKFRIIAMEGGDKIGEGTHTRVIVPR 116 (130)
T ss_pred eeEEEEeeeccCCCCCCeEEEEEEEEEEeccE----EEEEEEEeeCCcEEeeeEEEEEEecH
Confidence 44456677778999999999999999988774 22223333678888888888777664
No 83
>PF06281 DUF1035: Protein of unknown function (DUF1035); InterPro: IPR009379 Sulfolobus virus-like particle SSV1 and its fusellovirus homologues can be found in many acidic (pH less than 4.0) hot springs (greater than 70 degrees C) around the world. SSV1 contains a 15.5-kb double-stranded DNA genome that encodes 34 proteins with greater than 50 amino acids []. A site-specific integrase and a DnaA-like protein have been previously identified by sequence homology, and three structural proteins have been isolated from purified virus and identified by N-terminal sequencing (VP1, VP2, and VP3).; GO: 0005198 structural molecule activity, 0016021 integral to membrane
Probab=37.88 E-value=16 Score=22.75 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.2
Q ss_pred eEEeEEeeCCCCcc
Q psy11114 70 FTVPLFPHDPSYGE 83 (88)
Q Consensus 70 ~~~~l~~~~~~~~~ 83 (88)
.+++.|+.||+|-.
T Consensus 27 ~t~ssfv~nP~yvG 40 (73)
T PF06281_consen 27 VTTSSFVSNPQYVG 40 (73)
T ss_pred eeeccccCCcceec
Confidence 36789999999953
No 84
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=32.88 E-value=1.8e+02 Score=20.51 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=30.5
Q ss_pred eeEEEEEe-cCcCCCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCCeEEEeEEeEE
Q psy11114 20 GEQYLTLH-QPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRYAISKFTVPLF 75 (88)
Q Consensus 20 GEQ~~~~~-rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge~V~~~~~~l~ 75 (88)
=+..+.|| .|...++=+-.+.+-..+. .|.....-...|++|++||+..-...
T Consensus 201 ld~ti~f~~~p~~~~~Wl~~~~~~~~~~---~Gr~~~~~~l~d~~G~lvA~~~Q~~l 254 (255)
T PF13622_consen 201 LDHTIHFHRLPFDGDEWLLLEARSPRAG---NGRALMEGRLWDEDGRLVASSRQEAL 254 (255)
T ss_dssp EEEEEEECSHCCTTTS-EEEEEEEEEEE---TTEEEEEEEEEETTS-EEEEEEEEEE
T ss_pred ceeEEEEEeCCccCCceEEEEEEEeEeC---CCEEEEEEEEECCCCCEEEEEEEEee
Confidence 34555653 3444477666665544433 34555445568999999999865543
No 85
>COG3332 Uncharacterized conserved protein [Function unknown]
Probab=32.69 E-value=22 Score=27.08 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=15.9
Q ss_pred eEEeEEeeCCCCccccccC
Q psy11114 70 FTVPLFPHDPSYGERESLV 88 (88)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~~ 88 (88)
..+++|+.-|+||.|.|.|
T Consensus 214 lls~ifI~g~~YGTRastV 232 (270)
T COG3332 214 LLSTIFIPGPYYGTRASTV 232 (270)
T ss_pred hheeeeecCCCcccceeEE
Confidence 4589999999999998754
No 86
>PHA00739 V3 structural protein VP3
Probab=32.36 E-value=26 Score=22.69 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.0
Q ss_pred EeEEeEEeeCCCCc
Q psy11114 69 KFTVPLFPHDPSYG 82 (88)
Q Consensus 69 ~~~~~l~~~~~~~~ 82 (88)
|.+++-|+.||.|-
T Consensus 45 t~ttssfv~np~Yv 58 (92)
T PHA00739 45 TVTTSSFVSNPQYV 58 (92)
T ss_pred eEEeeccccCccee
Confidence 66788999999984
No 87
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=31.28 E-value=1.4e+02 Score=18.77 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCCEEEEEEEEeEEEecCCcEEEEEEEEECCCCC
Q psy11114 32 TYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQSRY 65 (88)
Q Consensus 32 ~gd~L~~~~rV~~V~DkGkgalv~~~~~~d~~Ge 65 (88)
.|.+++...+|..+++.|+.+++.+ +|.+|.
T Consensus 11 ~g~~V~v~Gwv~~~R~~g~~~Fi~L---rD~~g~ 41 (108)
T cd04316 11 DGEEVTVAGWVHEIRDLGGIKFVIL---RDREGI 41 (108)
T ss_pred CCCEEEEEEEEEeeeccCCeEEEEE---ecCCee
Confidence 5789999999999999987444443 455553
No 88
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=30.72 E-value=22 Score=24.64 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=10.8
Q ss_pred EEeEEeeCCCCccccc
Q psy11114 71 TVPLFPHDPSYGERES 86 (88)
Q Consensus 71 ~~~l~~~~~~~~~~~~ 86 (88)
..-.+++||-||+|..
T Consensus 106 ~~d~IvtnPPyG~r~~ 121 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLG 121 (179)
T ss_dssp BSCEEEEE--STTSHC
T ss_pred CCCEEEECcchhhhcc
Confidence 3457899999999854
No 89
>KOG1730|consensus
Probab=30.19 E-value=65 Score=23.73 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=32.9
Q ss_pred CeecccccCCCCCcceeEEeeEEEEEecCcCCCCEEEEEEEEeEEEecCC
Q psy11114 1 MRLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGK 50 (88)
Q Consensus 1 ~~~~~~~p~l~~d~~~vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~DkGk 50 (88)
||||..-|++.||-++ .+|..+|---.-+++.+..-.++.-...-+.
T Consensus 100 ~rlFkNR~~m~FdD~~---~~~dqef~lt~d~~g~iey~~K~s~f~nv~n 146 (206)
T KOG1730|consen 100 MRLFKNREQMDFDDAE---AEPDQEFSLTRDLTGEIEYPTKISKFQNVHN 146 (206)
T ss_pred eEeecCCccCCcchhh---cCcceecceecccCceEEeccceeeecccee
Confidence 7999999999999644 5666666555557777777666665554443
No 90
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=29.88 E-value=74 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=19.6
Q ss_pred CCcEEEEEE-EEECCCCCeEEEeEEeEEeeCC
Q psy11114 49 GKHAGLFST-LVRDQSRYAISKFTVPLFPHDP 79 (88)
Q Consensus 49 Gkgalv~~~-~~~d~~Ge~V~~~~~~l~~~~~ 79 (88)
.+|.-+.+. ..+|.+|.+++.+...||-.|+
T Consensus 7 ~~G~~l~l~G~V~D~~g~pv~~A~VeiW~~d~ 38 (146)
T cd00421 7 APGEPLTLTGTVLDGDGCPVPDALVEIWQADA 38 (146)
T ss_pred CCCCEEEEEEEEECCCCCCCCCcEEEEEecCC
Confidence 344444544 3467777777777777777666
No 91
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=29.32 E-value=1.4e+02 Score=18.10 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=29.4
Q ss_pred EecCc-CCCCEEEEEEEEeEEEecC---CcEEEEEEEEECCCCCeEEEeEE
Q psy11114 26 LHQPL-PTYGDIVSRCKVIDVLDKG---KHAGLFSTLVRDQSRYAISKFTV 72 (88)
Q Consensus 26 ~~rPL-p~gd~L~~~~rV~~V~DkG---kgalv~~~~~~d~~Ge~V~~~~~ 72 (88)
--||+ .||+++..+.-+.+...+. .+.-+. -...|++|..|.+...
T Consensus 6 TDr~iYrPGetV~~~~~~~~~~~~~~~~~~~~~~-v~i~dp~g~~v~~~~~ 55 (99)
T PF01835_consen 6 TDRPIYRPGETVHFRAIVRDLDNDFKPPANSPVT-VTIKDPSGNEVFRWSV 55 (99)
T ss_dssp ESSSEE-TTSEEEEEEEEEEECTTCSCESSEEEE-EEEEETTSEEEEEEEE
T ss_pred CCccCcCCCCEEEEEEEEeccccccccccCCceE-EEEECCCCCEEEEEEe
Confidence 34788 5899999998888877321 122222 1337888998877755
No 92
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=27.70 E-value=1.4e+02 Score=19.39 Aligned_cols=27 Identities=11% Similarity=-0.195 Sum_probs=20.6
Q ss_pred cCCCCEEEEEEEEeEEEecCCcEEEEE
Q psy11114 30 LPTYGDIVSRCKVIDVLDKGKHAGLFS 56 (88)
Q Consensus 30 Lp~gd~L~~~~rV~~V~DkGkgalv~~ 56 (88)
-..|..++...+|..+++.|+.+++.+
T Consensus 11 ~~~g~~V~i~Gwv~~~R~~gk~~Fi~L 37 (135)
T cd04317 11 SHVGQEVTLCGWVQRRRDHGGLIFIDL 37 (135)
T ss_pred hHCCCEEEEEEeEehhcccCCEEEEEE
Confidence 345788999999999999988444444
No 93
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=27.14 E-value=39 Score=21.48 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=9.3
Q ss_pred CcceeEEeeEEEEEecCcCC
Q psy11114 13 DLSQVLHGEQYLTLHQPLPT 32 (88)
Q Consensus 13 d~~~vLHGEQ~~~~~rPLp~ 32 (88)
.+..+|+-+..+|++|||.+
T Consensus 57 ~~d~~L~~GDRVEIYRPL~~ 76 (84)
T PF03658_consen 57 KLDTVLRDGDRVEIYRPLTA 76 (84)
T ss_dssp -TT-B--TT-EEEEE-S---
T ss_pred CCCCcCCCCCEEEEeccCcc
Confidence 35667888899999999864
No 94
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.32 E-value=38 Score=27.11 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=11.4
Q ss_pred EEeEEeeCCCCccc
Q psy11114 71 TVPLFPHDPSYGER 84 (88)
Q Consensus 71 ~~~l~~~~~~~~~~ 84 (88)
..-+.+.||-||||
T Consensus 299 ~~gvvI~NPPYGeR 312 (381)
T COG0116 299 EYGVVISNPPYGER 312 (381)
T ss_pred cCCEEEeCCCcchh
Confidence 45677889999998
No 95
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=24.73 E-value=2e+02 Score=18.47 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=35.6
Q ss_pred eEEeeEEEEEecCcCCCCEEEEEEEEeEEEec-CCcEEEEEEEEECCCCCeEEEeEEeE
Q psy11114 17 VLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDK-GKHAGLFSTLVRDQSRYAISKFTVPL 74 (88)
Q Consensus 17 vLHGEQ~~~~~rPLp~gd~L~~~~rV~~V~Dk-Gkgalv~~~~~~d~~Ge~V~~~~~~l 74 (88)
.+=-+-.++|.++....-.+.++.++..-..+ ++..-...+....++|+.+++.+.+.
T Consensus 72 ~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q~g~~~a~~~~~~ 130 (132)
T PF03756_consen 72 FVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQGGRVVATASMTF 130 (132)
T ss_pred EEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEECCEEEEEEEEEE
Confidence 44457889999987655555555555543333 22222333344668899999997763
No 96
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=24.51 E-value=2.3e+02 Score=19.18 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=27.2
Q ss_pred cCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE
Q psy11114 28 QPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV 59 (88)
Q Consensus 28 rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~ 59 (88)
-|+-.|.......++.+..|-|...+++.+..
T Consensus 104 ~P~l~~a~a~~eC~v~~~~~~GdH~l~igeV~ 135 (156)
T TIGR03615 104 APVLEDALVSFDCRISQSHSVGTHDILFCAVE 135 (156)
T ss_pred CcEeCCCeEEEEEEEEEEEecCCEEEEEEEEE
Confidence 37767788889999999999999999988855
No 97
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=24.38 E-value=2.3e+02 Score=19.13 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=30.5
Q ss_pred cCcCCCCEEEEEEEEeEEEecCCcEEEEEEEE---ECCCCCeE
Q psy11114 28 QPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV---RDQSRYAI 67 (88)
Q Consensus 28 rPLp~gd~L~~~~rV~~V~DkGkgalv~~~~~---~d~~Ge~V 67 (88)
-|+-.+.......++.+..+-|...++..+.. .+++++++
T Consensus 101 ~P~L~~a~a~~eC~v~~~~~~GdH~i~igeV~~~~~~~~~~pL 143 (154)
T TIGR02296 101 QPVLKGALAHLEGHIVDKHEIGTHTVFLVELKEIKVNGKRHAL 143 (154)
T ss_pred CcEeCCCEEEEEEEEEEEEECCCEEEEEEEEEEEeeCCCCCCC
Confidence 37777888888999999999999988888855 33444444
No 98
>PRK06386 replication factor A; Reviewed
Probab=23.77 E-value=3.2e+02 Score=21.65 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=29.1
Q ss_pred cCCCC-EEEEEEEEeEEEec-----CCcEEEEEEEEECCCCCeEEEeEE
Q psy11114 30 LPTYG-DIVSRCKVIDVLDK-----GKHAGLFSTLVRDQSRYAISKFTV 72 (88)
Q Consensus 30 Lp~gd-~L~~~~rV~~V~Dk-----Gkgalv~~~~~~d~~Ge~V~~~~~ 72 (88)
|.+++ .+..+.+|.+++.| ++-..+.....-|++|..-.|.|.
T Consensus 8 I~~~~~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~I~fT~W~ 56 (358)
T PRK06386 8 INAARQNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGTVPFTAWE 56 (358)
T ss_pred cCCCCCcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcceEEEEecC
Confidence 44554 68899999988865 222333333448899998888876
No 99
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=22.54 E-value=2.4e+02 Score=18.60 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=28.4
Q ss_pred EecCcCCC-CEEEEEEEEeEEEecC-----CcEEEEEE-EEECCCCCeEEEeEE
Q psy11114 26 LHQPLPTY-GDIVSRCKVIDVLDKG-----KHAGLFST-LVRDQSRYAISKFTV 72 (88)
Q Consensus 26 ~~rPLp~g-d~L~~~~rV~~V~DkG-----kgalv~~~-~~~d~~Ge~V~~~~~ 72 (88)
..+-|.++ ..+....+|.++.++. ++.-.+.. ...|++|..-++.|-
T Consensus 6 kI~dL~~g~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~ 59 (129)
T PRK06461 6 KIKDLKPGMERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWG 59 (129)
T ss_pred EHHHcCCCCCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeC
Confidence 34456667 4788888888776421 22222333 338889986666654
No 100
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=21.26 E-value=2.2e+02 Score=17.75 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=29.6
Q ss_pred EEEecCcCCCCEEEEEEEEeEEEecCCcEEEEEE--EE-ECCCCCeEEEeEEeEEeeCCCCcc
Q psy11114 24 LTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFST--LV-RDQSRYAISKFTVPLFPHDPSYGE 83 (88)
Q Consensus 24 ~~~~rPLp~gd~L~~~~rV~~V~DkGkgalv~~~--~~-~d~~Ge~V~~~~~~l~~~~~~~~~ 83 (88)
+.+..|. +|+.+....+|.+. +...... .. .|.+|+.++..-++-----|++|.
T Consensus 3 I~V~~P~-pg~~V~sp~~V~G~-----A~~FEgtv~~rv~D~~g~vl~e~~~~a~~g~~~~g~ 59 (88)
T PF10648_consen 3 IWVTAPA-PGDTVSSPVKVSGK-----ARVFEGTVNIRVRDGHGEVLAEGFVTATGGAPSWGP 59 (88)
T ss_pred eEEcCCC-CcCCcCCCEEEEEE-----EEEeeeEEEEEEEcCCCcEEEEeeEEeccCCCcccc
Confidence 4455664 57777776666653 2222222 12 788888886655554334455543
No 101
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.02 E-value=1.4e+02 Score=20.15 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=17.0
Q ss_pred EEEEEecCcCCCCEEEEEEEEe
Q psy11114 22 QYLTLHQPLPTYGDIVSRCKVI 43 (88)
Q Consensus 22 Q~~~~~rPLp~gd~L~~~~rV~ 43 (88)
-.+.|-.|+++|.+++...+-.
T Consensus 91 i~I~f~~PV~pG~tv~V~l~~v 112 (146)
T PF10989_consen 91 ITITFDEPVPPGTTVTVVLSPV 112 (146)
T ss_pred EEEEeCCCCCCCCEEEEEEEee
Confidence 4677889999999888776433
No 102
>KOG1511|consensus
Probab=20.59 E-value=93 Score=25.17 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=22.5
Q ss_pred ceeEEeeEEEEEecCcCCCC-EEEEEEEE
Q psy11114 15 SQVLHGEQYLTLHQPLPTYG-DIVSRCKV 42 (88)
Q Consensus 15 ~~vLHGEQ~~~~~rPLp~gd-~L~~~~rV 42 (88)
+-+||||+...|+||--+.. .|.+..++
T Consensus 12 KvILfGEHAVVyg~~AlAaai~LrTyl~l 40 (397)
T KOG1511|consen 12 KVILFGEHAVVYGRTALAAAIDLRTYLRL 40 (397)
T ss_pred cEEEeccceeEECCceeEEEeecceeEEE
Confidence 45899999999999976653 57777777
Done!