RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11114
(88 letters)
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 74.1 bits (182), Expect = 2e-17
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHA 52
+ D S +LHGEQYL + LPT G +++ KV DV+DKG A
Sbjct: 387 NSQVDFSNILHGEQYLEIVDDLPTSGTLLTNGKVFDVMDKGSGA 430
>1s9c_A Peroxisomal multifunctional enzyme type 2; hot-DOG fold, hydratase
2 motif, lyase; 3.00A {Homo sapiens} SCOP: d.38.1.4
d.38.1.4 PDB: 2cdh_S
Length = 298
Score = 53.6 bits (128), Expect = 3e-10
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 9 GKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGL 54
G + ++VLHGEQYL L++PLP G + V DVLDKG +
Sbjct: 79 GLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVI 124
>3kh8_A MAOC-like dehydratase; hot DOG domain, lyase; 2.00A {Phytophthora
capsici}
Length = 332
Score = 52.6 bits (125), Expect = 7e-10
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 12 FDLSQVLHGEQYLTLHQPL-PTYGDIVSRCKVIDVLDKGKHA 52
F+ + +LHGEQ + + +PL P+ G + + KVI DKGK
Sbjct: 118 FNPAMILHGEQSVEILRPLDPSGGTLTGKTKVISFYDKGKGT 159
>3khp_A MAOC family protein; dehydrogenase, oxidoreductase, structural
genomics; HET: TLA; 2.30A {Mycobacterium tuberculosis
H37RV}
Length = 311
Score = 51.4 bits (122), Expect = 2e-09
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 12 FDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAG 53
F+ + +LHG Q + LH PLP G + +V D+ DKG+
Sbjct: 94 FNPAALLHGSQGIRLHAPLPAAGKLSVVTEVADIQDKGEGKN 135
>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold,
hydratase 2 motif, lyase; 1.95A {Candida tropicalis}
SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
Length = 280
Score = 47.8 bits (113), Expect = 4e-08
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 1 MRLFPIYLGKEFDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKGKHA 52
+ L + F+ +LHGE YL +H P PT G+I + + I KG +
Sbjct: 55 SQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNV 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 2.1
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 15/67 (22%)
Query: 13 DLSQVLHGEQYLTLHQP------------LPTYGDIVSRCKVIDVLDKG---KHAGLFST 57
L Q+ + Y+ + P LP + + K D+L + +F
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 58 LVRDQSR 64
+ R
Sbjct: 583 AHKQVQR 589
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
coli, complex, ligase/RNA complex; HET: QSI; 2.25A
{Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Length = 553
Score = 25.6 bits (57), Expect = 2.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 70 FTVPLFPHDPSYGERE 85
T+P P+ P G R+
Sbjct: 363 VTMPNHPNKPEMGSRQ 378
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 24.8 bits (55), Expect = 3.8
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 32 TYGDIVSRCKVIDVLDK-GKHAGLFS---TLVRDQSRY 65
T GD V ++K + G+ + D
Sbjct: 114 TMGDHVYS---QQFIEKAVRGEGVIADREPRFVDIGEA 148
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG,
structural genomics; HET: MSE; 1.55A {Sphaerobacter
thermophilus}
Length = 242
Score = 24.3 bits (53), Expect = 6.2
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 42 VIDVLDKGKHAGLFSTLVRDQSRYAIS 68
++D G A S LV + ++
Sbjct: 44 LVDGQGSGAGAKRLSLLVAGAAVRLLN 70
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 24.4 bits (54), Expect = 6.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 7 YLGKEFDLSQVL 18
Y+ + FDLS+VL
Sbjct: 215 YIEETFDLSKVL 226
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 24.2 bits (53), Expect = 8.4
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 69 KFTVPLFPHDPSYGERE 85
+ PL P P G R
Sbjct: 423 RVERPLHPDHPEIGNRV 439
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese
binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus
subtilis} PDB: 3t9q_A*
Length = 242
Score = 23.8 bits (52), Expect = 9.0
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 44 DVLDKGKHAGLFSTLVR 60
D + G A S
Sbjct: 43 DGMGNGARAHFESNETI 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.143 0.431
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,340,903
Number of extensions: 66383
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 13
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)