RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11114
         (88 letters)



>d1pn2a1 d.38.1.4 (A:4-151) 2-enoyl-coa hydratase domain of
           multifunctional peroxisomal
           hydratase-dehydrogenase-epimerase {Yeast (Candida
           tropicalis) [TaxId: 5482]}
          Length = 148

 Score = 60.3 bits (146), Expect = 8e-14
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 8   LGKEFDLSQVLHGEQYLTLHQ-PLPTYGDIVSRCKVIDVLDKGKHAGLF--STLVRDQS 63
           L + F+   +LHGE YL +H  P PT G+I +  + I    KG +  +   S  V ++S
Sbjct: 59  LLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKS 117


>d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of
           multifunctional peroxisomal
           hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 154

 Score = 47.8 bits (113), Expect = 6e-09
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 3   LFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLVRDQ 62
                 G   + ++VLHGEQYL L++PLP  G +     V DVLDKG    +   +    
Sbjct: 64  GLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVIIMDVYSYS 123

Query: 63  S 63
            
Sbjct: 124 E 124


>d1gtra1 b.53.1.2 (A:339-547) Gln-tRNA synthetase (GlnRS),
          C-terminal (anticodon-binding) domain {Escherichia coli
          [TaxId: 562]}
          Length = 209

 Score = 25.0 bits (54), Expect = 1.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 70 FTVPLFPHDPSYGERE 85
           T+P  P+ P  G R+
Sbjct: 25 VTMPNHPNKPEMGSRQ 40


>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
           {Escherichia coli [TaxId: 562]}
          Length = 439

 Score = 23.5 bits (51), Expect = 4.2
 Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)

Query: 14  LSQVLHGEQYLTLHQPLPT---YGD 35
           L  + + E+  ++H  LP     GD
Sbjct: 147 LKAIFNDEEKFSVHSALPQVALLGD 171


>d1i0ra_ b.45.1.2 (A:) Ferric reductase {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 161

 Score = 23.2 bits (49), Expect = 4.9
 Identities = 11/59 (18%), Positives = 18/59 (30%)

Query: 1   MRLFPIYLGKEFDLSQVLHGEQYLTLHQPLPTYGDIVSRCKVIDVLDKGKHAGLFSTLV 59
           +  F      EF+    +  +   T    +  +   V   KV+   D G H       V
Sbjct: 76  IGRFGFRKSSEFEKFDGVEYKTGKTGVPLVTQHAVAVIEAKVVKECDVGTHTLFVGEAV 134


>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
           {Haemophilus influenzae [TaxId: 727]}
          Length = 252

 Score = 22.9 bits (49), Expect = 7.9
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 26  LHQPLPTYGDIVSRCKVIDVLDKGKHA 52
           L  P  T  +++    V  VL  G H 
Sbjct: 178 LDCPHYTRPEVLEGLTVPPVLMSGHHE 204


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.143    0.431 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 325,930
Number of extensions: 12395
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 6
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)