BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11115
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 61/74 (82%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
LGFSVR VL Q+A N+PALFK++KVRF+ PV+PGQTLR D+W++ RI+F+T V ET
Sbjct: 528 CTLGFSVRAVLAQFADNNPALFKAVKVRFSGPVIPGQTLRVDLWKQGTRINFRTVVVETG 587
Query: 118 QVVISGAYVDLKSS 131
+ VISGAYVDLKSS
Sbjct: 588 KEVISGAYVDLKSS 601
>pdb|1S9C|A Chain A, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|B Chain B, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|C Chain C, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|D Chain D, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|E Chain E, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|F Chain F, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|G Chain G, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|H Chain H, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|I Chain I, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|J Chain J, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|K Chain K, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
pdb|1S9C|L Chain L, Crystal Structure Analysis Of The 2-Enoyl-Coa Hydratase 2
Domain Of Human Peroxisomal Multifunctional Enzyme Type
2
Length = 298
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
GFS R VL+Q+A ND + FK++K RFAKPV PGQTL+T+MW+E NRIHFQT V ET
Sbjct: 218 CTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETG 277
Query: 118 QVVISGAYVDL 128
+VIS AYVDL
Sbjct: 278 DIVISNAYVDL 288
>pdb|2CDH|S Chain S, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|T Chain T, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|U Chain U, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|V Chain V, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|W Chain W, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|X Chain X, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 248
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
GFS R VL+Q+A ND + FK++K RFAKPV PGQTL+T+MW+E NRIHFQT V ET
Sbjct: 177 CTFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETG 236
Query: 118 QVVISGAYVDL 128
+VIS AYVDL
Sbjct: 237 DIVISNAYVDL 247
>pdb|3KH8|A Chain A, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
pdb|3KH8|B Chain B, Crystal Structure Of Maoc-Like Dehydratase From
Phytophthora Capsici
Length = 332
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQE-SNRIHFQTSVAETNQ 118
+G + R + +Q+ G D A FKS++VRF+ P PG+T++T MWQE S ++ FQ V E
Sbjct: 255 MGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETIQTRMWQEGSGKVLFQAVVKERGA 314
Query: 119 VVISGA 124
V++ G
Sbjct: 315 VIVDGG 320
>pdb|3KHP|A Chain A, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|B Chain B, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|C Chain C, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
pdb|3KHP|D Chain D, Crystal Structure Of A Possible Dehydrogenase From
Mycobacterium Tuberculosis At 2.3a Resolution
Length = 311
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 61 GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ-ESNRIHFQTSVAETN 117
G + R ++ + G A S+ RF KPV PG+TL T +W+ E R F+T VA ++
Sbjct: 236 GVAGRALVAELGGGVAANITSIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSD 293
>pdb|1PN4|A Chain A, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|B Chain B, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|C Chain C, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa.
pdb|1PN4|D Chain D, Crystal Structure Of 2-Enoyl-Coa Hydratase 2 Domain Of
Candida Tropicalis Multifunctional Enzyme Type 2
Complexed With (3r)-Hydroxydecanoyl-Coa
Length = 280
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 61 GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQES-NRIHFQTSVAETNQV 119
G S + ++ ++ +F +K RF V PG+TLR W+ES + I FQT V + +
Sbjct: 210 GLSAKALIDKFG-----MFNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTI 264
Query: 120 VISGAYVDL 128
I+ A + L
Sbjct: 265 AINNAAIKL 273
>pdb|1PN2|A Chain A, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|B Chain B, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|C Chain C, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
pdb|1PN2|D Chain D, Crystal Structure Analysis Of The Selenomethionine
Labelled 2-Enoyl-Coa Hydratase 2 Domain Of Candida
Tropicalis Multifunctional Enzyme Type 2
Length = 280
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 61 GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQES-NRIHFQTSVAETNQV 119
G S + ++ ++ F +K RF V PG+TLR W+ES + I FQT V + +
Sbjct: 210 GLSAKALIDKFG-----XFNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTI 264
Query: 120 VISGAYVDL 128
I+ A + L
Sbjct: 265 AINNAAIKL 273
>pdb|1Z6B|A Chain A, Crystal Structure Of Plasmodium Falciparum Fabz At 2.1 A
pdb|1Z6B|B Chain B, Crystal Structure Of Plasmodium Falciparum Fabz At 2.1 A
pdb|1Z6B|C Chain C, Crystal Structure Of Plasmodium Falciparum Fabz At 2.1 A
pdb|1Z6B|D Chain D, Crystal Structure Of Plasmodium Falciparum Fabz At 2.1 A
pdb|1Z6B|E Chain E, Crystal Structure Of Plasmodium Falciparum Fabz At 2.1 A
pdb|1Z6B|F Chain F, Crystal Structure Of Plasmodium Falciparum Fabz At 2.1 A
pdb|3AZ8|A Chain A, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|B Chain B, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|C Chain C, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|D Chain D, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|E Chain E, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|F Chain F, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|G Chain G, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|H Chain H, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|I Chain I, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|J Chain J, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|K Chain K, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|L Chain L, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|M Chain M, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|N Chain N, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|O Chain O, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|P Chain P, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|Q Chain Q, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|R Chain R, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|S Chain S, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|T Chain T, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|U Chain U, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|V Chain V, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|W Chain W, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ8|X Chain X, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas21
pdb|3AZ9|A Chain A, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|B Chain B, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|C Chain C, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|D Chain D, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|E Chain E, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|F Chain F, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|G Chain G, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|H Chain H, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|I Chain I, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|J Chain J, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|K Chain K, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|L Chain L, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|M Chain M, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|N Chain N, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|O Chain O, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|P Chain P, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|Q Chain Q, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|R Chain R, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|S Chain S, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|T Chain T, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|U Chain U, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|V Chain V, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|W Chain W, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZ9|X Chain X, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91
pdb|3AZA|A Chain A, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|B Chain B, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|C Chain C, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|D Chain D, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|E Chain E, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|F Chain F, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|G Chain G, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|H Chain H, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|I Chain I, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|J Chain J, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|K Chain K, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|L Chain L, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|M Chain M, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|N Chain N, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|O Chain O, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|P Chain P, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|Q Chain Q, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|R Chain R, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|S Chain S, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|T Chain T, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|U Chain U, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|V Chain V, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|W Chain W, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZA|X Chain X, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-10
pdb|3AZB|A Chain A, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|B Chain B, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|C Chain C, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|D Chain D, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|E Chain E, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|F Chain F, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|G Chain G, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|H Chain H, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|I Chain I, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|J Chain J, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|K Chain K, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|L Chain L, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|M Chain M, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|N Chain N, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|O Chain O, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|P Chain P, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|Q Chain Q, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|R Chain R, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|S Chain S, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|T Chain T, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|U Chain U, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|V Chain V, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|W Chain W, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
pdb|3AZB|X Chain X, Beta-Hydroxyacyl-Acyl Carrier Protein Dehydratase (Fabz)
From Plasmodium Falciparum In Complex With Nas91-11
Length = 154
Score = 30.0 bits (66), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 41 LRQYAGNDPALFKSGYP---AILGFSVRHVLRQYAG-----------NDPALFKSLK-VR 85
L+Q + N+P F +P + G L Q AG N+ LF + VR
Sbjct: 44 LKQVSTNEP-FFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVR 102
Query: 86 FAKPVLPGQTLRTDMWQESNRIHFQTSVA 114
+ KPVLPG TL ++N I F++S+
Sbjct: 103 WKKPVLPGDTLT----MQANLISFKSSLG 127
>pdb|1ZHG|A Chain A, Crystal Structure Of Beta-Hydroxyacyl-Acyl Carrier Protein
Dehydratase (Fabz) From Plasmodium Falciparum
pdb|1ZHG|B Chain B, Crystal Structure Of Beta-Hydroxyacyl-Acyl Carrier Protein
Dehydratase (Fabz) From Plasmodium Falciparum
Length = 139
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 41 LRQYAGNDPALFKSGYP---AILGFSVRHVLRQYAG-----------NDPALFKSLK-VR 85
L+Q + N+P F +P + G L Q AG N+ LF + VR
Sbjct: 30 LKQVSTNEP-FFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVR 88
Query: 86 FAKPVLPGQTLRTDMWQESNRIHFQTSVA 114
+ KPVLPG TL ++N I F++S+
Sbjct: 89 WKKPVLPGDTLT----MQANLISFKSSLG 113
>pdb|2OKH|A Chain A, Crystal Structure Of Dimeric Form Of Pffabz In Crystal
Form3
pdb|2OKH|B Chain B, Crystal Structure Of Dimeric Form Of Pffabz In Crystal
Form3
pdb|2OKI|A Chain A, Crystal Structure Of Dimeric Form Of Pffabz In Crystal
Form2
pdb|2OKI|B Chain B, Crystal Structure Of Dimeric Form Of Pffabz In Crystal
Form2
Length = 136
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 41 LRQYAGNDPALFKSGYP---AILGFSVRHVLRQYAG-----------NDPALFKSLK-VR 85
L+Q + N+P F +P + G L Q AG N+ LF + VR
Sbjct: 27 LKQVSTNEP-FFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVR 85
Query: 86 FAKPVLPGQTLRTDMWQESNRIHFQTSVA 114
+ KPVLPG TL ++N I F++S+
Sbjct: 86 WKKPVLPGDTLT----MQANLISFKSSLG 110
>pdb|3DPG|A Chain A, Sgrai With Noncognate Dna Bound
pdb|3DPG|B Chain B, Sgrai With Noncognate Dna Bound
pdb|3DVO|A Chain A, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|B Chain B, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|C Chain C, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|D Chain D, Sgrai With Cognate Dna And Calcium Bound
pdb|3DW9|A Chain A, Sgrai With Cognate Dna And Manganese Bound
pdb|3DW9|B Chain B, Sgrai With Cognate Dna And Manganese Bound
pdb|3MQ6|A Chain A, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|B Chain B, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|C Chain C, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|D Chain D, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|E Chain E, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|F Chain F, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|G Chain G, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|H Chain H, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQY|A Chain A, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3MQY|B Chain B, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3N78|A Chain A, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N78|B Chain B, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N7B|A Chain A, Sgrai Bound To Secondary Site Dna And Ca(Ii)
pdb|3N7B|B Chain B, Sgrai Bound To Secondary Site Dna And Ca(Ii)
Length = 338
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 90 VLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSSVQ 133
VLP + +MW+E + NQ+++SGAY L+ VQ
Sbjct: 192 VLPEEFQNDEMWREE-----IAGLTRPNQILLSGAYQRLQGRVQ 230
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 96 LRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSSVQMRK---TGATSRPPGATLHTHR 152
LR D+ Q N + +AE+N+ I+G V+++ SV TS P G+
Sbjct: 27 LRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFS 85
Query: 153 VNAADDLIS 161
VN +D L S
Sbjct: 86 VNVSDALPS 94
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 899
Score = 26.9 bits (58), Expect = 8.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 76 PALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSSVQ 133
PALF+ L +FAK + P T+ + I S+ N V Y+D V
Sbjct: 7 PALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDXNGIVH 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,258,246
Number of Sequences: 62578
Number of extensions: 238264
Number of successful extensions: 608
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 20
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)