BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11115
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97852|DHB4_RAT Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus
GN=Hsd17b4 PE=1 SV=3
Length = 735
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 88/145 (60%), Gaps = 15/145 (10%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
GFS RHVL+Q+A ND + FK++KVRFAKPV PGQTL+T+MW+E NRIHFQT V ET
Sbjct: 534 CTFGFSARHVLQQFADNDVSRFKAIKVRFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETG 593
Query: 118 QVVISGAYVDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQAVFDGMLERVQ-ADP 176
+VIS AYVDL + +G +++ P + L S VF + R++
Sbjct: 594 DIVISNAYVDL-----VPTSGVSAQTP---------SEGGALQSALVFGEIGRRLKDVGR 639
Query: 177 SLTKKVNGVFVYVILKNGKKADTWS 201
+ KKVN VF + I KNG A W+
Sbjct: 640 EVVKKVNAVFEWHITKNGNVAAKWT 664
>sp|P51660|DHB4_MOUSE Peroxisomal multifunctional enzyme type 2 OS=Mus musculus
GN=Hsd17b4 PE=1 SV=3
Length = 735
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 15/145 (10%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
GFS RHVL+Q+A ND + FK++KVRFAKPV PGQTL+T+MW+E NRIHFQT V ET
Sbjct: 534 CTFGFSARHVLQQFADNDVSRFKAIKVRFAKPVYPGQTLQTEMWKEGNRIHFQTKVHETG 593
Query: 118 QVVISGAYVDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQAVFDGMLERVQA-DP 176
VVIS AYVDL P + + T + +L S VF + R+++
Sbjct: 594 DVVISNAYVDLV--------------PASGVSTQTPSEGGELQSALVFGEIGRRLKSVGR 639
Query: 177 SLTKKVNGVFVYVILKNGKKADTWS 201
+ KK N VF + I K G A W+
Sbjct: 640 EVVKKANAVFEWHITKGGTVAAKWT 664
>sp|P51659|DHB4_HUMAN Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens
GN=HSD17B4 PE=1 SV=3
Length = 736
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 15/145 (10%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
GFS R VL+Q+A ND + FK++K RFAKPV PGQTL+T+MW+E NRIHFQT V ET
Sbjct: 535 CTFGFSARRVLQQFADNDVSRFKAIKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETG 594
Query: 118 QVVISGAYVDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQAVFDGMLERVQ-ADP 176
+VIS AYVDL + +G +++ P + L S VF+ + R++ P
Sbjct: 595 DIVISNAYVDLAPT-----SGTSAKTP---------SEGGKLQSTFVFEEIGRRLKDIGP 640
Query: 177 SLTKKVNGVFVYVILKNGKKADTWS 201
+ KKVN VF + I K G W+
Sbjct: 641 EVVKKVNAVFEWHITKGGNIGAKWT 665
>sp|Q9VXJ0|DHB4_DROME Peroxisomal multifunctional enzyme type 2 OS=Drosophila
melanogaster GN=Mfe2 PE=1 SV=1
Length = 598
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 61/74 (82%)
Query: 58 AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETN 117
LGFSVR VL Q+A N+PALFK++KVRF+ PV+PGQTLR D+W++ RI+F+T V ET
Sbjct: 521 CTLGFSVRAVLAQFADNNPALFKAVKVRFSGPVIPGQTLRVDLWKQGTRINFRTVVVETG 580
Query: 118 QVVISGAYVDLKSS 131
+ VISGAYVDLKSS
Sbjct: 581 KEVISGAYVDLKSS 594
>sp|Q8VYI3|ECH2_ARATH Enoyl-CoA hydratase 2, peroxisomal OS=Arabidopsis thaliana GN=ECH2
PE=1 SV=1
Length = 309
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 9/91 (9%)
Query: 47 NDPALFK-SGYP-------AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRT 98
+DP K +G+P LGF+++ +++ DP K++ RF V PG+TL T
Sbjct: 214 SDPEFAKLAGFPRPILHGLCTLGFAIKAIIKCVCKGDPTAVKTISGRFLTTVFPGETLIT 273
Query: 99 DMWQESNRIHFQTSVAETNQVVISGAYVDLK 129
+MW E R+ +QT V E N+ V++G YVD++
Sbjct: 274 EMWLEGLRVIYQTKVKERNKTVLAG-YVDIR 303
>sp|Q01373|FOX2_NEUCR Peroxisomal hydratase-dehydrogenase-epimerase OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=fox-2 PE=1 SV=1
Length = 894
Score = 65.5 bits (158), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 48 DPALFKSG---YPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQES 104
DPA K G P + G + + FK++KVRFA V PGQTL T+MW+E
Sbjct: 810 DPAFAKVGGFKVPILHGLCSFGIAGKAVYEKYGKFKNIKVRFAGTVNPGQTLVTEMWKEG 869
Query: 105 NRIHFQTSVAETNQVVISGAYVDL 128
N++ FQT V ET ++ ISGA +L
Sbjct: 870 NKVVFQTKVKETGKLAISGAAAEL 893
>sp|Q54XZ0|MFEB_DICDI Probable enoyl-CoA hydratase 2 OS=Dictyostelium discoideum GN=mfeB
PE=2 SV=1
Length = 294
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 61 GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ-ESNRIHFQTSVAETNQV 119
G + R VL + NDP+ KS+K RF K V PG+T+ T+MW+ I FQ+
Sbjct: 218 GIASRGVLEHFCDNDPSRLKSIKTRFTKHVYPGETIETEMWKINPTTILFQSKTNRDGSY 277
Query: 120 VIS 122
V+S
Sbjct: 278 VLS 280
>sp|Q02207|FOX2_YEAST Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=FOX2 PE=1
SV=1
Length = 900
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 48 DPALFKS-GYP-------AILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTD 99
DP L K+ +P LG S + + Y ++ LKVRF V PG TL+
Sbjct: 810 DPTLAKAVKFPTPILHGLCTLGISAKALFEHYGP-----YEELKVRFTNVVFPGDTLKVK 864
Query: 100 MWQESNRIHFQTSVAETNQVVISGAYVDL 128
W++ + + FQT N +V+ A V L
Sbjct: 865 AWKQGSVVVFQTIDTTRNVIVLDNAAVKL 893
>sp|P22414|FOX2_CANTR Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis
PE=1 SV=2
Length = 906
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 61 GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQES-NRIHFQTSVAETNQV 119
G S + ++ ++ +F +K RF V PG+TLR W+ES + I FQT V + +
Sbjct: 836 GLSAKALIDKFG-----MFNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDRGTI 890
Query: 120 VISGAYVDL 128
I+ A + L
Sbjct: 891 AINNAAIKL 899
>sp|Q01T92|FABZ_SOLUE 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Solibacter
usitatus (strain Ellin6076) GN=fabZ PE=3 SV=1
Length = 162
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 43 QYAGNDPALFKSGYPAILGFSVRHVLRQYAG-----------NDPALFKSLK-VRFAKPV 90
Q+ G+ P +P + G + + Q AG N L +++ RF KPV
Sbjct: 45 QFTGHFP-----DFPVMPGVMIVEAMAQTAGVLVLHSMPDRANKLVLLVAIENARFRKPV 99
Query: 91 LPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSSVQMRKTGATSRPPGA 146
+PG TLR +M I + SVA+ + V ++ V + +PP A
Sbjct: 100 VPGDTLRMEM----KIIKRKASVAKMAGIATVDGVVVAEAEVMCKLADKEEKPPAA 151
>sp|A5W8P2|SECA_PSEP1 Protein translocase subunit SecA OS=Pseudomonas putida (strain F1 /
ATCC 700007) GN=secA PE=3 SV=2
Length = 911
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 20 YLSGLDHHQIGIHL-GFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPAL 78
+LS +DH + GIHL G++ ++ ++Y +LF+ +I ++R +
Sbjct: 778 HLSTMDHLRHGIHLRGYAQKNPKQEYKRESFSLFQELLESIKRDTIR------------V 825
Query: 79 FKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVA---ETNQVVISGAYVDLKSS 131
++VR P LR + + ++R+ FQ + A E+ Q+ GA V + S+
Sbjct: 826 LSHVQVRREDPAEEEARLRREAEELASRMQFQHAAAPGLESEQLSEEGAEVAVASA 881
>sp|P94892|RPOC_LEUMM DNA-directed RNA polymerase subunit beta' OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 /
NCDO 523) GN=rpoC PE=3 SV=2
Length = 1220
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 32 HLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVL 91
H+ +R +LR+ DP G +L ++ + N+PALF+ L A+PVL
Sbjct: 1069 HIEVMIRQMLRKIRVMDP-----GQTDLLPGTLMDIADFKRANEPALFEGLVPATARPVL 1123
Query: 92 PGQTLRTDMWQESNRIHFQTSVAETNQVVISGA 124
G T E+N S ET +V+ A
Sbjct: 1124 LGITKAA---LETNSFLSAASFQETTRVLTDAA 1153
>sp|B1MVW7|RPOC_LEUCK DNA-directed RNA polymerase subunit beta' OS=Leuconostoc citreum
(strain KM20) GN=rpoC PE=3 SV=1
Length = 1220
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 32 HLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVL 91
H+ +R +LR+ DP G ++L + + N+PALF L A+PVL
Sbjct: 1069 HIEVMIRQMLRKVRVMDP-----GETSLLPGMLMDIADFQRANEPALFDGLVPATARPVL 1123
Query: 92 PGQTLRTDMWQESNRIHFQTSVAETNQVVISGA 124
G T E+N S ET +V+ A
Sbjct: 1124 LGITKAA---LETNSFLSAASFQETTRVLTDAA 1153
>sp|B0KFR8|SECA_PSEPG Protein translocase subunit SecA OS=Pseudomonas putida (strain
GB-1) GN=secA PE=3 SV=1
Length = 911
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 20 YLSGLDHHQIGIHL-GFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPAL 78
+LS +DH + GIHL G++ ++ ++Y +LF+ +I ++R +
Sbjct: 778 HLSTMDHLRHGIHLRGYAQKNPKQEYKRESFSLFQELLESIKRDTIR------------V 825
Query: 79 FKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVA 114
++VR P+ LR + + ++R+ FQ + A
Sbjct: 826 LSHVQVRREDPIEEEARLRREAEELASRMQFQHAAA 861
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,311,307
Number of Sequences: 539616
Number of extensions: 2886081
Number of successful extensions: 6494
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6477
Number of HSP's gapped (non-prelim): 25
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)