Query psy11115
Match_columns 203
No_of_seqs 237 out of 988
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 18:18:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02864 enoyl-CoA hydratase 99.9 4.4E-26 9.5E-31 203.2 14.3 115 8-131 190-306 (310)
2 cd03448 HDE_HSD HDE_HSD The R 99.9 1.8E-25 3.9E-30 174.6 13.9 113 8-128 7-121 (122)
3 KOG1206|consensus 99.9 9E-26 2E-30 193.0 4.1 113 8-131 154-268 (272)
4 cd03447 FAS_MaoC FAS_MaoC, the 99.9 5.1E-23 1.1E-27 161.4 13.7 113 8-129 5-124 (126)
5 cd03455 SAV4209 SAV4209 is a S 99.8 1.1E-19 2.4E-24 140.3 12.9 107 13-128 11-122 (123)
6 cd03453 SAV4209_like SAV4209_l 99.8 1.4E-19 3E-24 140.6 12.7 106 12-128 11-126 (127)
7 PF01575 MaoC_dehydratas: MaoC 99.8 4.8E-20 1E-24 142.5 7.5 83 14-104 19-103 (122)
8 PRK13693 (3R)-hydroxyacyl-ACP 99.8 9.1E-19 2E-23 139.9 13.0 107 13-129 22-140 (142)
9 cd03441 R_hydratase_like (R)-h 99.8 6E-18 1.3E-22 128.6 12.5 109 11-128 8-126 (127)
10 COG2030 MaoC Acyl dehydratase 99.8 3.5E-18 7.5E-23 138.9 11.4 110 10-126 31-151 (159)
11 cd03449 R_hydratase (R)-hydrat 99.8 8.5E-18 1.8E-22 128.4 12.3 106 13-128 13-126 (128)
12 cd03452 MaoC_C MaoC_C The C-t 99.7 6.4E-18 1.4E-22 134.2 8.5 102 12-124 17-133 (142)
13 PRK08190 bifunctional enoyl-Co 99.7 5.2E-17 1.1E-21 151.9 15.4 108 12-129 25-140 (466)
14 cd03451 FkbR2 FkbR2 is a Strep 99.7 3.1E-17 6.7E-22 129.0 9.5 109 12-128 20-141 (146)
15 cd03446 MaoC_like MoaC_like 99.7 2.4E-16 5.2E-21 123.1 11.1 103 13-124 18-135 (140)
16 cd03454 YdeM YdeM is a Bacillu 99.7 6.2E-16 1.3E-20 121.3 10.3 103 13-124 17-134 (140)
17 cd03450 NodN NodN (nodulation 99.7 8.6E-16 1.9E-20 123.9 11.3 84 12-103 23-111 (149)
18 PRK13691 (3R)-hydroxyacyl-ACP 99.6 3.3E-14 7.1E-19 116.7 11.8 111 12-131 19-146 (166)
19 TIGR02278 PaaN-DH phenylacetic 99.5 6E-14 1.3E-18 136.4 9.3 104 13-125 541-657 (663)
20 PRK13692 (3R)-hydroxyacyl-ACP 99.5 2.5E-13 5.4E-18 110.7 10.8 109 12-129 19-143 (159)
21 PRK11563 bifunctional aldehyde 99.5 1.9E-13 4.1E-18 133.0 9.3 104 12-124 552-668 (675)
22 PRK04424 fatty acid biosynthes 98.6 4.7E-07 1E-11 75.5 12.0 79 49-129 100-181 (185)
23 KOG4170|consensus 98.5 5.9E-08 1.3E-12 75.3 2.6 41 159-201 2-42 (113)
24 PRK00006 fabZ (3R)-hydroxymyri 98.4 5.6E-06 1.2E-10 65.5 11.6 79 49-129 56-143 (147)
25 cd01288 FabZ FabZ is a 17kD be 98.3 7.3E-06 1.6E-10 62.7 10.0 78 49-128 41-128 (131)
26 TIGR01750 fabZ beta-hydroxyacy 98.2 2.8E-05 6.1E-10 60.9 11.2 81 46-128 45-138 (140)
27 PF13452 MaoC_dehydrat_N: N-te 98.1 9.3E-06 2E-10 62.7 6.3 103 11-122 12-131 (132)
28 PRK13188 bifunctional UDP-3-O- 97.9 0.00012 2.6E-09 69.2 11.8 78 49-128 369-457 (464)
29 cd03440 hot_dog The hotdog fol 97.9 0.00039 8.4E-09 46.2 11.1 74 49-123 14-95 (100)
30 cd00493 FabA_FabZ FabA/Z, beta 97.8 0.00057 1.2E-08 51.9 11.1 73 50-123 41-125 (131)
31 COG3777 Uncharacterized conser 97.7 6.7E-05 1.4E-09 65.6 5.1 91 5-104 160-250 (273)
32 PF03061 4HBT: Thioesterase su 97.5 0.0012 2.7E-08 45.5 9.4 43 75-117 29-74 (79)
33 PF07977 FabA: FabA-like domai 97.4 0.0032 6.9E-08 49.3 11.4 77 46-123 42-137 (138)
34 COG0764 FabA 3-hydroxymyristoy 97.2 0.0055 1.2E-07 49.7 10.9 78 46-123 50-137 (147)
35 cd03443 PaaI_thioesterase PaaI 97.0 0.02 4.4E-07 42.0 11.4 77 49-128 27-111 (113)
36 TIGR02286 PaaD phenylacetic ac 97.0 0.024 5.1E-07 42.8 11.6 79 49-129 29-112 (114)
37 cd00586 4HBT 4-hydroxybenzoyl- 96.9 0.038 8.2E-07 39.2 11.4 50 74-123 49-102 (110)
38 PF13622 4HBT_3: Thioesterase- 96.6 0.036 7.7E-07 47.1 11.5 79 50-132 9-90 (255)
39 cd01287 FabA FabA, beta-hydrox 96.6 0.027 5.8E-07 45.6 10.2 49 80-128 89-145 (150)
40 TIGR01749 fabA beta-hydroxyacy 96.4 0.06 1.3E-06 44.4 11.3 72 50-122 72-154 (169)
41 PRK05174 3-hydroxydecanoyl-(ac 96.4 0.074 1.6E-06 44.0 11.4 76 47-123 71-158 (172)
42 cd03445 Thioesterase_II_repeat 96.3 0.13 2.8E-06 38.1 11.4 76 49-128 14-92 (94)
43 cd01289 FabA_like Domain of un 96.2 0.11 2.5E-06 40.9 11.1 53 75-128 76-134 (138)
44 cd03442 BFIT_BACH Brown fat-in 96.0 0.23 5E-06 36.7 11.6 53 76-129 49-111 (123)
45 TIGR00369 unchar_dom_1 unchara 96.0 0.17 3.8E-06 38.1 10.9 77 49-127 31-114 (117)
46 PRK10694 acyl-CoA esterase; Pr 95.8 0.3 6.6E-06 38.6 12.0 34 70-104 48-82 (133)
47 cd00556 Thioesterase_II Thioes 95.2 0.32 6.8E-06 34.8 9.4 73 50-123 14-93 (99)
48 TIGR02799 thio_ybgC tol-pal sy 95.0 0.24 5.3E-06 37.2 8.7 52 76-128 52-106 (126)
49 COG0824 FcbC Predicted thioest 94.8 0.38 8.3E-06 37.9 9.8 54 77-131 57-113 (137)
50 COG5496 Predicted thioesterase 94.8 0.61 1.3E-05 37.2 10.5 69 61-129 41-113 (130)
51 PRK10800 acyl-CoA thioesterase 94.6 0.33 7.1E-06 37.1 8.6 55 74-129 51-109 (130)
52 TIGR00051 acyl-CoA thioester h 94.4 0.42 9.2E-06 35.0 8.6 49 75-123 47-99 (117)
53 PRK07531 bifunctional 3-hydrox 93.3 1.6 3.5E-05 41.5 12.4 84 76-179 395-482 (495)
54 COG2050 PaaI HGG motif-contain 93.2 1.6 3.4E-05 34.2 10.3 77 49-129 49-135 (141)
55 COG1607 Acyl-CoA hydrolase [Li 93.1 3.9 8.4E-05 33.6 12.7 62 53-114 31-99 (157)
56 PLN02322 acyl-CoA thioesterase 93.0 2.6 5.7E-05 34.3 11.6 81 49-130 41-133 (154)
57 PRK10293 acyl-CoA esterase; Pr 92.6 2.6 5.6E-05 33.3 10.8 78 48-128 48-133 (136)
58 TIGR00189 tesB acyl-CoA thioes 92.6 1.4 3.1E-05 37.8 10.1 76 51-130 21-99 (271)
59 PF13279 4HBT_2: Thioesterase- 92.4 1.4 3.1E-05 32.7 8.7 48 76-123 43-97 (121)
60 PRK11688 hypothetical protein; 91.4 5.1 0.00011 31.9 11.4 48 79-128 100-151 (154)
61 TIGR02447 yiiD_Cterm thioester 91.0 3.6 7.9E-05 32.3 10.0 49 75-123 68-130 (138)
62 PRK10526 acyl-CoA thioesterase 88.9 5.9 0.00013 35.0 10.7 78 50-131 31-111 (286)
63 PRK10254 thioesterase; Provisi 88.6 10 0.00022 30.1 10.9 73 49-123 49-129 (137)
64 PF12119 DUF3581: Protein of u 87.4 1.5 3.2E-05 37.8 5.6 57 20-98 23-80 (218)
65 KOG3328|consensus 82.1 15 0.00032 30.0 8.9 79 51-131 54-141 (148)
66 PF10989 DUF2808: Protein of u 80.3 5.9 0.00013 31.6 6.0 41 79-119 88-133 (146)
67 PLN02864 enoyl-CoA hydratase 64.2 36 0.00078 30.6 7.8 49 81-129 98-155 (310)
68 PLN02868 acyl-CoA thioesterase 61.9 61 0.0013 29.9 9.1 77 51-131 158-237 (413)
69 PLN02647 acyl-CoA thioesterase 59.8 43 0.00093 31.8 7.7 35 68-102 325-359 (437)
70 PLN02370 acyl-ACP thioesterase 57.0 58 0.0013 30.8 8.0 49 76-124 196-249 (419)
71 PF02036 SCP2: SCP-2 sterol tr 55.7 7.9 0.00017 27.9 1.7 21 175-195 13-34 (102)
72 PF14539 DUF4442: Domain of un 53.1 81 0.0018 24.4 7.2 48 78-128 76-130 (132)
73 PRK12442 translation initiatio 50.9 27 0.0006 26.0 3.9 38 74-111 28-71 (87)
74 PF09500 YiiD_Cterm: Putative 47.8 67 0.0015 25.9 6.1 106 9-127 21-142 (144)
75 PLN02647 acyl-CoA thioesterase 42.6 2.6E+02 0.0056 26.7 10.0 31 83-113 151-184 (437)
76 PF03756 AfsA: A-factor biosyn 39.7 1.7E+02 0.0036 22.2 7.9 51 77-128 72-130 (132)
77 PF01643 Acyl-ACP_TE: Acyl-ACP 39.4 2.5E+02 0.0054 24.1 9.1 53 76-129 203-260 (261)
78 cd05793 S1_IF1A S1_IF1A: Trans 34.2 54 0.0012 23.6 3.2 33 72-104 19-53 (77)
79 PF12945 YcgR_2: Flagellar pro 34.1 1E+02 0.0022 21.3 4.6 26 89-114 47-72 (87)
80 COG0335 RplS Ribosomal protein 33.5 67 0.0014 25.2 3.7 21 90-110 21-42 (115)
81 PF02933 CDC48_2: Cell divisio 33.5 61 0.0013 21.9 3.2 31 88-120 17-47 (64)
82 PF06059 DUF930: Domain of Unk 31.4 2.4E+02 0.0051 21.5 6.5 47 75-123 30-81 (101)
83 PF14864 Alkyl_sulf_C: Alkyl s 30.9 68 0.0015 24.5 3.5 39 157-197 9-47 (125)
84 PF01828 Peptidase_A4: Peptida 30.7 81 0.0017 26.8 4.2 20 85-104 85-105 (208)
85 PF01643 Acyl-ACP_TE: Acyl-ACP 30.7 2.4E+02 0.0051 24.3 7.2 55 74-129 58-117 (261)
86 TIGR03028 EpsE polysaccharide 30.5 61 0.0013 27.7 3.5 15 90-104 4-18 (239)
87 TIGR03027 pepcterm_export puta 29.6 51 0.0011 26.5 2.7 15 90-104 3-17 (165)
88 TIGR00008 infA translation ini 28.8 72 0.0016 22.6 3.0 28 75-102 27-57 (68)
89 PRK10183 hypothetical protein; 27.3 75 0.0016 21.9 2.7 36 156-197 18-53 (56)
90 KOG1708|consensus 27.3 86 0.0019 27.2 3.7 34 90-123 73-107 (236)
91 PRK04012 translation initiatio 26.7 90 0.0019 23.7 3.4 33 72-104 40-74 (100)
92 PF07703 A2M_N_2: Alpha-2-macr 25.9 2.4E+02 0.0052 21.1 5.8 34 88-123 8-43 (136)
93 cd06555 ASCH_PF0470_like ASC-1 25.3 1.7E+02 0.0037 22.5 4.8 34 79-112 17-54 (109)
94 smart00652 eIF1a eukaryotic tr 25.0 1E+02 0.0022 22.5 3.3 33 72-104 24-58 (83)
95 PF13180 PDZ_2: PDZ domain; PD 24.8 1E+02 0.0023 21.3 3.3 23 90-112 59-81 (82)
96 COG4956 Integral membrane prot 23.9 1.1E+02 0.0025 28.1 4.1 16 89-104 290-305 (356)
97 KOG2763|consensus 23.4 1.3E+02 0.0028 28.0 4.4 34 68-102 234-268 (357)
98 cd04456 S1_IF1A_like S1_IF1A_l 23.4 1.3E+02 0.0028 21.6 3.6 33 72-104 19-53 (78)
99 PF00337 Gal-bind_lectin: Gala 22.1 2.2E+02 0.0048 21.5 4.9 22 82-103 2-23 (133)
100 COG3884 FatA Acyl-ACP thioeste 22.1 1.2E+02 0.0025 26.9 3.6 25 80-104 194-218 (250)
101 PRK11798 ClpXP protease specif 21.6 2.8E+02 0.006 22.4 5.5 32 61-92 9-40 (138)
102 PF07075 DUF1343: Protein of u 21.3 91 0.002 29.0 3.0 33 39-73 135-167 (365)
No 1
>PLN02864 enoyl-CoA hydratase
Probab=99.94 E-value=4.4e-26 Score=203.24 Aligned_cols=115 Identities=34% Similarity=0.504 Sum_probs=104.5
Q ss_pred eEEeeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEE
Q psy11115 8 YQVDLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVR 85 (203)
Q Consensus 8 ~~~~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vR 85 (203)
.+++..++++|++||++|||+||||.| ||+.. +|+++|+|| |||+|++.++++++++++++++++++++|
T Consensus 190 ~~~~~~t~~~~~~~a~lSGD~NPiH~d~~~A~~~-------gf~~~IaHG-m~t~g~~~~~~~~~~~~~~~~~~~~~~~r 261 (310)
T PLN02864 190 AVFEDQTQPSQALLYRLSGDYNPLHSDPMFAKVA-------GFTRPILHG-LCTLGFAVRAVIKCFCNGDPTAVKTISGR 261 (310)
T ss_pred eEEeeccChhHHHHHHhhCCCCcccCCHHHHhhC-------CCCCceecc-HHHHHHHHHHHHhhhcCCCCceEEEEEEE
Confidence 567789999999999999999999965 55444 469999999 99999999999999999999999999999
Q ss_pred eccccCCCCeEEEEEEEeCCEEEEEEEEeeCCcEEEeceEEEEeeC
Q psy11115 86 FAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSS 131 (203)
Q Consensus 86 F~~PV~PGDtL~v~~w~~g~~v~f~~~v~~~G~~VLsgg~a~l~~~ 131 (203)
|.+||+|||||++++|++++++.|++.++++|++||+| .++|++.
T Consensus 262 F~~PV~pGdtl~~~~~~~~~~v~~~~~~~~~g~~vl~G-~a~~~~~ 306 (310)
T PLN02864 262 FLLHVYPGETLVTEMWLEGLRVIYQTKVKERNKAVLSG-YVDLRHL 306 (310)
T ss_pred EcCCccCCCEEEEEEEeCCCEEEEEEEEecCCeEEEEE-EEEEecc
Confidence 99999999999999999999999999998899999987 8999855
No 2
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=99.93 E-value=1.8e-25 Score=174.59 Aligned_cols=113 Identities=41% Similarity=0.650 Sum_probs=103.1
Q ss_pred eEEeeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEE
Q psy11115 8 YQVDLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVR 85 (203)
Q Consensus 8 ~~~~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vR 85 (203)
.+++.++.+++..+|+++||+||||.| ||+.. +|+++|+|| ||+++++.+.+.++++++.+.+++++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~SgD~nPiH~d~e~A~~~-------g~~~~iahG-~~t~a~~~~~~~~~~~~~~~~~~~~~~~r 78 (122)
T cd03448 7 AVVEIPTSPDQALLYRLSGDYNPLHIDPAFAKAA-------GFPRPILHG-LCTYGFAARAVLEAFADGDPARFKAIKVR 78 (122)
T ss_pred EEEEecCCcChHHHHHHhCCCCccccCHHHHHHc-------CCCCceehh-HHHHHHHHHHHHHHhcCCCcceeEEEEEE
Confidence 689999999999999999999999964 54444 459999999 99999999999999988888999999999
Q ss_pred eccccCCCCeEEEEEEEeCCEEEEEEEEeeCCcEEEeceEEEE
Q psy11115 86 FAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDL 128 (203)
Q Consensus 86 F~~PV~PGDtL~v~~w~~g~~v~f~~~v~~~G~~VLsgg~a~l 128 (203)
|.+||+|||||++++|+.++.+.|++.+.++|++|++++++++
T Consensus 79 F~~PV~~gDtl~~~~~~~~~~v~~~~~~~~~g~~v~~g~~~~~ 121 (122)
T cd03448 79 FSSPVFPGETLRTEMWKEGNRVIFQTKVVERDVVVLSNGAALL 121 (122)
T ss_pred EcCCccCCCEEEEEEEEeCCEEEEEEEEccCCcEEEECCEEec
Confidence 9999999999999999988899999998889999999999887
No 3
>KOG1206|consensus
Probab=99.92 E-value=9e-26 Score=192.97 Aligned_cols=113 Identities=37% Similarity=0.521 Sum_probs=102.6
Q ss_pred eEEeeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEE
Q psy11115 8 YQVDLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVR 85 (203)
Q Consensus 8 ~~~~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vR 85 (203)
.++...+.+||+.||++|||.||||.| +|+.++ |+.||+|| ||+.|+++|+|..++. |..|+++++|
T Consensus 154 ~~v~~~ts~DqaAlyrlsgD~NPLHiDPe~A~~ag-------FetpilHG-lc~lg~~~riv~a~~~---~a~y~~~kvr 222 (272)
T KOG1206|consen 154 AVVERFTSEDQAALYRLSGDHNPLHIDPESALEAG-------FETPILHG-LCTLGFSARIVGAQFP---PAVYKAQKVR 222 (272)
T ss_pred hheeecchhhHHHHHHhcCCCCccccCHHHHHhcC-------CCCchhhh-HHHhhhhHHHHHHhcC---chhhheeeee
Confidence 467889999999999999999999954 544443 59999999 9999999999999984 7889999999
Q ss_pred eccccCCCCeEEEEEEEeCCEEEEEEEEeeCCcEEEeceEEEEeeC
Q psy11115 86 FAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSS 131 (203)
Q Consensus 86 F~~PV~PGDtL~v~~w~~g~~v~f~~~v~~~G~~VLsgg~a~l~~~ 131 (203)
|++||+|||||.+..|+.+.++.|++.++++|++|+++..+.+++.
T Consensus 223 F~spV~pGdtll~~~wK~g~r~~fqt~vv~t~~~v~sna~iDl~~a 268 (272)
T KOG1206|consen 223 FSSPVGPGDTLLVLVWKQGLRITFQTYVVETGKIVISNAVIDLEAA 268 (272)
T ss_pred ecCCCCCchhHHHHHHhhhceeEEEEEEEEEEEEEeeccEEehhhh
Confidence 9999999999999999999999999999999999999998887755
No 4
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=99.90 E-value=5.1e-23 Score=161.37 Aligned_cols=113 Identities=18% Similarity=0.197 Sum_probs=93.5
Q ss_pred eEEeeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEE
Q psy11115 8 YQVDLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVR 85 (203)
Q Consensus 8 ~~~~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vR 85 (203)
..+...+.+|+..|++++||+||||.| ||+.. +|+++|+|| ||+++++.+.+..++.++++..++++++|
T Consensus 5 ~~~~~~t~~d~~~fa~lsGD~nPiH~D~~~A~~~-------g~~~~iahG-~l~~~~~~~~~~~~~~~~~~~~~~~~~~r 76 (126)
T cd03447 5 ASLTITAPASNEPYARVSGDFNPIHVSRVFASYA-------GLPGTITHG-MYTSAAVRALVETWAADNDRSRVRSFTAS 76 (126)
T ss_pred ceEEEEChHHHHHHHHHhCCCCccCCCHHHHHHc-------CCCCCeech-hHHHHHHHHHHHHhccCCCcceEEEEEEE
Confidence 356788999999999999999999965 44444 469999999 99999999998888766788899999999
Q ss_pred eccccCCCCeEEEEEEEeC---CEEEEEEEE-eeC-CcEEEeceEEEEe
Q psy11115 86 FAKPVLPGQTLRTDMWQES---NRIHFQTSV-AET-NQVVISGAYVDLK 129 (203)
Q Consensus 86 F~~PV~PGDtL~v~~w~~g---~~v~f~~~v-~~~-G~~VLsgg~a~l~ 129 (203)
|.+||+|||+|++++|+.+ +.+.+++.+ +++ |++|+.| .+++.
T Consensus 77 f~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g-~~~v~ 124 (126)
T cd03447 77 FVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRG-EAEVE 124 (126)
T ss_pred EcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEE-EEEEe
Confidence 9999999999999999754 455666655 456 8899988 56554
No 5
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=99.83 E-value=1.1e-19 Score=140.32 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=87.2
Q ss_pred ccchhhHhhhhccCCCCCCChhhhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCC
Q psy11115 13 TRGNDQVYLSGLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLP 92 (203)
Q Consensus 13 ~~~~~~~~~a~ldgD~npih~~~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~P 92 (203)
.+..++..|++++||+||||.|.+ +|+.+ +|+++|+|| |++++++.+.+..++. ++.++.++++||.+||+|
T Consensus 11 vt~~~i~~fa~~s~D~~piH~D~~----~A~~~-g~~~~ia~G-~~~~~~~~~~~~~~~~--~~~~~~~~~~rf~~pv~~ 82 (123)
T cd03455 11 PDPTLLFRYSAATRDFHRIHHDRD----YARAV-GYPDLYVNG-PTLAGLVIRYVTDWAG--PDARVKSFAFRLGAPLYA 82 (123)
T ss_pred CCHHHHHHHHhhcCCCCcccCCHH----HHHhc-CCCceEEEH-HHHHHHHHHHHHHccC--CcceEEEEEEEeeccccC
Confidence 567888999999999999997522 23333 469999999 9999999999888863 467899999999999999
Q ss_pred CCeEEEEEEEeC---C-EEEEEEEEe-eCCcEEEeceEEEE
Q psy11115 93 GQTLRTDMWQES---N-RIHFQTSVA-ETNQVVISGAYVDL 128 (203)
Q Consensus 93 GDtL~v~~w~~g---~-~v~f~~~v~-~~G~~VLsgg~a~l 128 (203)
||+|++++++.+ + .+.+++++. ++|++|+.+ .+++
T Consensus 83 Gdtl~~~~~v~~~~~~~~v~~~~~~~nq~G~~v~~g-~a~v 122 (123)
T cd03455 83 GDTLRFGGRVTAKRDDEVVTVELWARNSEGDHVMAG-TATV 122 (123)
T ss_pred CCEEEEEEEEEeeccCcEEEEEEEEEcCCCCEEEeE-EEEE
Confidence 999999999754 2 567787764 789999988 5554
No 6
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.82 E-value=1.4e-19 Score=140.63 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=87.6
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccc
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKP 89 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~P 89 (203)
..+.+++..|++++||+||||.| ||+.. +|+++|+|| |++++++.+.+.+++. ++..+.++++||.+|
T Consensus 11 ~vt~~~i~~fa~~sgD~npiH~D~~~A~~~-------g~~~~i~~G-~~~~~~~~~~~~~~~~--~~~~i~~~~~rf~~P 80 (127)
T cd03453 11 PVSRADLVRYAGASGDFNPIHYDEDFAKKV-------GLPGVIAHG-MLTMGLLGRLVTDWVG--DPGRVVSFGVRFTKP 80 (127)
T ss_pred ecCHHHHHHHHHhhcCCCccccCHHHHHHc-------CCCCcEecH-HHHHHHHHHHHHHHcC--CccceEEEEEEECCc
Confidence 46778999999999999999965 44443 469999999 9999999999988863 466788999999999
Q ss_pred cCCCCeEEEEEEEeC-------CEEEEEEEE-eeCCcEEEeceEEEE
Q psy11115 90 VLPGQTLRTDMWQES-------NRIHFQTSV-AETNQVVISGAYVDL 128 (203)
Q Consensus 90 V~PGDtL~v~~w~~g-------~~v~f~~~v-~~~G~~VLsgg~a~l 128 (203)
|+|||+|++++++.+ +.+.+++.+ +++|++|++| .+++
T Consensus 81 v~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq~g~~v~~g-~a~v 126 (127)
T cd03453 81 VPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQAGGKKVLG-RAIV 126 (127)
T ss_pred CcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEcCCCEEEEE-EEEE
Confidence 999999999988642 357788776 4789999987 6654
No 7
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=99.81 E-value=4.8e-20 Score=142.52 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=66.8
Q ss_pred cchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccC
Q psy11115 14 RGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVL 91 (203)
Q Consensus 14 ~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~ 91 (203)
+..++..|++++||+||||.| ||+..+ |+++|+|| |++++++.+.+.+++.++.+.++.++++||.+||+
T Consensus 19 t~~~~~~fa~~sgD~nPiH~D~~~A~~~g-------f~~~ivhG-~~~~a~~~~~~~~~~~~~~~~~~~~~~~rF~~PV~ 90 (122)
T PF01575_consen 19 TEADIRQFAALSGDFNPIHVDPEYARATG-------FGGPIVHG-MLTLALASGLLGDWLGPNPPARLGRFNVRFRAPVF 90 (122)
T ss_dssp EHHHHHHHHHHHT---HHHH-HHHHHTST-------TSSSB-BH-HHHHHHHHHHHHHHHSTTECEEEEEEEEEESS--B
T ss_pred CHHHHHHHHHhhCCCCcceecHHHHhhcC-------CCCEEEcc-HHHHHHHHHHHHHhccCccceEEEEEEEEEecccc
Confidence 467889999999999999964 555543 59999999 99999999999999876667899999999999999
Q ss_pred CCCeEEEEEEEeC
Q psy11115 92 PGQTLRTDMWQES 104 (203)
Q Consensus 92 PGDtL~v~~w~~g 104 (203)
|||+|++++|+.+
T Consensus 91 ~gdtl~~~~~v~~ 103 (122)
T PF01575_consen 91 PGDTLTAEVEVTE 103 (122)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEE
Confidence 9999999999865
No 8
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=99.80 E-value=9.1e-19 Score=139.95 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=84.1
Q ss_pred ccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEecccc
Q psy11115 13 TRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPV 90 (203)
Q Consensus 13 ~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV 90 (203)
.+.+|+.+|++++||+||||.| ||+.. +|+++|+|| ||+++++.+.+.+++ +++..+.++++||.+||
T Consensus 22 vt~~di~~FA~~sgD~nPiH~D~~~A~~~-------g~~~~iahG-~~~~a~~~~~~~~~~--~~~~~~~~~~~rF~~pv 91 (142)
T PRK13693 22 LTRQDLVNYAGVSGDLNPIHWDDEIAKVV-------GLDTAIAHG-MLTMGLGGGYVTSWV--GDPGAVTEYNVRFTAVV 91 (142)
T ss_pred eCHHHHHHHHHHhCCCCccccCHHHHHhc-------CCCCcEecH-HHHHHHHHHHHHHhc--CCCcceEEEEEEecccE
Confidence 5788999999999999999975 44333 469999999 999999999988885 34666789999999999
Q ss_pred CC-CC----eEEEEEEEeC-----CEEEEEEEEeeCCcEEEeceEEEEe
Q psy11115 91 LP-GQ----TLRTDMWQES-----NRIHFQTSVAETNQVVISGAYVDLK 129 (203)
Q Consensus 91 ~P-GD----tL~v~~w~~g-----~~v~f~~~v~~~G~~VLsgg~a~l~ 129 (203)
++ || +|+++.++.+ +.+.+++.+.++|+..+..|.+++.
T Consensus 92 ~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 140 (142)
T PRK13693 92 PVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTGGKKIFGRAIASAK 140 (142)
T ss_pred ECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEECCcEEEEEEEEEEE
Confidence 95 45 7777766542 4688998888777765555566554
No 9
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=99.77 E-value=6e-18 Score=128.63 Aligned_cols=109 Identities=23% Similarity=0.317 Sum_probs=88.7
Q ss_pred eeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEecc
Q psy11115 11 DLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAK 88 (203)
Q Consensus 11 ~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~ 88 (203)
...+.+++..|+.++||+||||.| ||+.. +++++|+|| +++++++.+.+..++.+++...+..+++||.+
T Consensus 8 ~~~~~~~~~~fa~~~gd~npiH~d~~~A~~~-------~~~~~i~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 79 (127)
T cd03441 8 RTVTEADIALFARLSGDPNPIHVDPEYAKAA-------GFGGRIAHG-MLTLSLASGLLVQWLPGTDGANLGSQSVRFLA 79 (127)
T ss_pred eEcCHHHHHHHHHHhCCCCccccCHHHHHhC-------CCCCceech-HHHHHHHHhhhhhhccCcccceeEEeEEEEeC
Confidence 345678889999999999999965 55444 359999999 99999999999888754477889999999999
Q ss_pred ccCCCCeEEEEEEEeC-------CEEEEEEEEe-eCCcEEEeceEEEE
Q psy11115 89 PVLPGQTLRTDMWQES-------NRIHFQTSVA-ETNQVVISGAYVDL 128 (203)
Q Consensus 89 PV~PGDtL~v~~w~~g-------~~v~f~~~v~-~~G~~VLsgg~a~l 128 (203)
||+|||+|+++.++.+ +.+.+++.+. ++|++|+.| .+++
T Consensus 80 Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~v~~g-~~~~ 126 (127)
T cd03441 80 PVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEVVLSG-EATV 126 (127)
T ss_pred CcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCEEEEE-EEEe
Confidence 9999999999998753 3577777765 668888885 5543
No 10
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=99.77 E-value=3.5e-18 Score=138.86 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=88.3
Q ss_pred EeeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCC-CceEEEEEEEe
Q psy11115 10 VDLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGND-PALFKSLKVRF 86 (203)
Q Consensus 10 ~~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd-~~~l~s~~vRF 86 (203)
.+..+.+|+..|+.++||+||||.| ||+.. ..|+++|+|| |||++++.+.+..++..+. +..+...++||
T Consensus 31 ~~~~t~~d~~~fa~~tgD~qpiH~D~e~A~~~------~~fg~~iahG-~~t~a~~~~~~~~~~~~~~~~~~~g~~~vRF 103 (159)
T COG2030 31 WRTVTEADIVLFAAVTGDPNPIHLDPEAAKKT------SGFGGPIAHG-MLTLALAMGLVVAALGDPSVGANLGGDEVRF 103 (159)
T ss_pred ceEecHHHHHHHHHhcCCCCceecCHHHHhcc------CCCCCEehhH-HHHHHHHHHHHHHhccCcceeeeccccceEe
Confidence 3467788999999999999999965 44442 1359999999 9999999999999875432 45888999999
Q ss_pred ccccCCCCeEEEEEEEeC-------CEEEEEEEE-eeCCcEEEeceEE
Q psy11115 87 AKPVLPGQTLRTDMWQES-------NRIHFQTSV-AETNQVVISGAYV 126 (203)
Q Consensus 87 ~~PV~PGDtL~v~~w~~g-------~~v~f~~~v-~~~G~~VLsgg~a 126 (203)
.+||+|||||+++.|+.+ +.+.++..+ +++|+.|+.....
T Consensus 104 ~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~~g~~v~~~~~~ 151 (159)
T COG2030 104 VKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQEGELVLTLEAT 151 (159)
T ss_pred cCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEccCCcEEEEEEEe
Confidence 999999999999999864 567777665 5778888876433
No 11
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=99.76 E-value=8.5e-18 Score=128.42 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=85.9
Q ss_pred ccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEecccc
Q psy11115 13 TRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPV 90 (203)
Q Consensus 13 ~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV 90 (203)
.+.+++..|++++||+||||.| ||+.. +|+++|+|| |++++++.+.+..++ +++..+..++++||.+||
T Consensus 13 v~~~~~~~fa~~~gd~npiH~D~~~A~~~-------g~~~~i~~g-~~~~~~~~~~~~~~~-~g~~~~~~~~~~~f~~Pv 83 (128)
T cd03449 13 ITEEDVELFAELSGDFNPIHLDEEYAKKT-------RFGGRIAHG-MLTASLISAVLGTLL-PGPGTIYLSQSLRFLRPV 83 (128)
T ss_pred EcHHHHHHHHHHhCCCCCccCCHHHHhhC-------CCCCceecH-HHHHHHHHHHHhccC-CCceEEEEEEEEEECCCc
Confidence 5677889999999999999954 55444 459999999 999999998776664 666777889999999999
Q ss_pred CCCCeEEEEEEEe---C--CEEEEEEEEe-eCCcEEEeceEEEE
Q psy11115 91 LPGQTLRTDMWQE---S--NRIHFQTSVA-ETNQVVISGAYVDL 128 (203)
Q Consensus 91 ~PGDtL~v~~w~~---g--~~v~f~~~v~-~~G~~VLsgg~a~l 128 (203)
+|||+|+++.++. + +.+.+++.+. ++|++|+.+ .+++
T Consensus 84 ~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~~g~~v~~g-~~~~ 126 (128)
T cd03449 84 FIGDTVTATVTVTEKREDKKRVTLETVCTNQNGEVVIEG-EAVV 126 (128)
T ss_pred cCCCEEEEEEEEEEEecCCCEEEEEEEEEeCCCCEEEEE-EEEE
Confidence 9999999998864 2 4677888775 569999887 4443
No 12
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=99.74 E-value=6.4e-18 Score=134.20 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=79.6
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEE---EEEEEe
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFK---SLKVRF 86 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~---s~~vRF 86 (203)
..+.+++..|++++||+||||.| ||+++ +|+++|+|| |++++++.+.+..+. + +..+. ..++||
T Consensus 17 tvt~~~i~~Fa~~tgD~nPiH~D~e~A~~~-------~fg~~ia~G-~l~~s~~~~l~~~~~-~--~~~~~~~g~~~~rf 85 (142)
T cd03452 17 TVTEADIVNFACLTGDHFYAHMDEIAAKAS-------FFGKRVAHG-YFVLSAAAGLFVDPA-P--GPVLANYGLENLRF 85 (142)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHHHHhhC-------CCCCeeecH-HHHHHHHhhhCccCC-c--ccEEEEeccceEEE
Confidence 35678899999999999999964 55544 459999999 999999998775542 2 23433 359999
Q ss_pred ccccCCCCeEEEEEEEeC---------CEEEEEEEE-eeCCcEEEece
Q psy11115 87 AKPVLPGQTLRTDMWQES---------NRIHFQTSV-AETNQVVISGA 124 (203)
Q Consensus 87 ~~PV~PGDtL~v~~w~~g---------~~v~f~~~v-~~~G~~VLsgg 124 (203)
.+||+|||+|++++++.+ +.+.+++.+ +++|++|+.+.
T Consensus 86 ~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~ 133 (142)
T cd03452 86 LEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGELVASYD 133 (142)
T ss_pred CCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCEEEEEE
Confidence 999999999999887532 257788776 47899999874
No 13
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=99.73 E-value=5.2e-17 Score=151.92 Aligned_cols=108 Identities=14% Similarity=0.175 Sum_probs=88.9
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccc
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKP 89 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~P 89 (203)
-.+.+++..|++++||+||||.| ||+.+ +|+++|+|| ||+++++.+.+..++ ++.+..+.++++||.+|
T Consensus 25 tvT~~di~~FA~lsGD~nPiH~D~e~Ak~s-------gfg~~IahG-~l~~s~~~~l~~~~~-~g~~~~~~~~~~rF~~P 95 (466)
T PRK08190 25 TLTPDDIELFAAMSGDVNPAHLDAAYAASD-------GFHHVVAHG-MWGGALISAVLGTRL-PGPGTIYLGQSLRFRRP 95 (466)
T ss_pred EecHHHHHHHHHHhCCCCCCCcCHHHHHhC-------CCCCceeCH-HHHHHHHHHHHhhhC-CCcceEEEEEEEEEeCC
Confidence 35678899999999999999954 55544 459999999 999999998776764 67778889999999999
Q ss_pred cCCCCeEEEEEEEeC-----CEEEEEEEE-eeCCcEEEeceEEEEe
Q psy11115 90 VLPGQTLRTDMWQES-----NRIHFQTSV-AETNQVVISGAYVDLK 129 (203)
Q Consensus 90 V~PGDtL~v~~w~~g-----~~v~f~~~v-~~~G~~VLsgg~a~l~ 129 (203)
|+|||||++++|+.+ +.+.+++++ +++|++|+.+ .+++.
T Consensus 96 V~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq~G~~V~~g-~~~~l 140 (466)
T PRK08190 96 VRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQDGEVVITG-TAEVI 140 (466)
T ss_pred cCCCCEEEEEEEEEEEECCCCEEEEEEEEEeCCCCEEEEE-EEEee
Confidence 999999999998743 357788876 5889999988 55444
No 14
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=99.72 E-value=3.1e-17 Score=129.03 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=83.5
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccc
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKP 89 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~P 89 (203)
..+.+++..|++++||+||+|.| ||+.. +|+++|+|| |++++++.+.+..++.++....+...++||.+|
T Consensus 20 tvt~~~i~~fa~~~gd~~piH~D~~~a~~~-------~~~~~ia~G-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p 91 (146)
T cd03451 20 TVTEADNVLFTLLTMNTAPLHFDAAYAAKT-------EFGRRLVNS-LFTLSLALGLSVNDTSLTAVANLGYDEVRFPAP 91 (146)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHHHHhhC-------CCCCccccH-HhHHHHHhhheehhccccceeccCccEEEecCC
Confidence 36788999999999999999965 44444 459999999 999999987666664322333444458999999
Q ss_pred cCCCCeEEEEEEEeC----------CEEEEEEEEe-eCCcEEEeceEEEE
Q psy11115 90 VLPGQTLRTDMWQES----------NRIHFQTSVA-ETNQVVISGAYVDL 128 (203)
Q Consensus 90 V~PGDtL~v~~w~~g----------~~v~f~~~v~-~~G~~VLsgg~a~l 128 (203)
|+|||+|++++++.+ +.+.+++.+. ++|++|+++....+
T Consensus 92 v~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~V~~~~~~~~ 141 (146)
T cd03451 92 VFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEPVLSFERTAL 141 (146)
T ss_pred CCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCEEEEEEehhE
Confidence 999999999887632 2577888875 88999998854433
No 15
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.69 E-value=2.4e-16 Score=123.12 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=77.5
Q ss_pred ccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCce---EEEEEEEec
Q psy11115 13 TRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPAL---FKSLKVRFA 87 (203)
Q Consensus 13 ~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~---l~s~~vRF~ 87 (203)
.+.+++..|++++||+||+|.| ||+.. +|+++|+|| |++++++.+++..+..+ .+.. +...++||.
T Consensus 18 vt~~~i~~fa~~~gD~np~H~D~~~A~~~-------~~~~~ia~G-~~~~a~~~~~~~~~~~~-~~~~~~~~g~~~~~f~ 88 (140)
T cd03446 18 VTEADVVMFAGLSGDWNPIHTDAEYAKKT-------RFGERIAHG-LLTLSIATGLLQRLGVF-ERTVVAFYGIDNLRFL 88 (140)
T ss_pred ECHHHHHHHHHhhCCCcccccCHHHHccC-------CCCCceecc-ccHHHHHhhHhhhcccc-cceeeEEeccceEEEc
Confidence 4678899999999999999965 44444 459999999 99999998776543221 1111 222389999
Q ss_pred cccCCCCeEEEEEEEeC---------CEEEEEEEEe-eCCcEEEece
Q psy11115 88 KPVLPGQTLRTDMWQES---------NRIHFQTSVA-ETNQVVISGA 124 (203)
Q Consensus 88 ~PV~PGDtL~v~~w~~g---------~~v~f~~~v~-~~G~~VLsgg 124 (203)
+||+|||+|+++.+..+ +.+.+++.+. ++|++|+++.
T Consensus 89 ~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~ 135 (140)
T cd03446 89 NPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEVVQSGE 135 (140)
T ss_pred CCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCEEEEEE
Confidence 99999999999987632 2577887764 7899999883
No 16
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=99.66 E-value=6.2e-16 Score=121.34 Aligned_cols=103 Identities=15% Similarity=0.170 Sum_probs=77.8
Q ss_pred ccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCC-Cce-EEEEEEEecc
Q psy11115 13 TRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGND-PAL-FKSLKVRFAK 88 (203)
Q Consensus 13 ~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd-~~~-l~s~~vRF~~ 88 (203)
.+.+++..|+.+ ||+||||.| ||++++ |+++|+|| |++++++.+.+.+....++ ... +...++||.+
T Consensus 17 vt~~~v~~Fa~~-~D~npih~D~e~A~~~~-------~~~~ia~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 87 (140)
T cd03454 17 VTEEEIIAFARE-FDPQPFHLDEEAAKESL-------FGGLAASG-WHTAAITMRLLVDAGLSGSASGGSPGIDELRWPR 87 (140)
T ss_pred EcHHHHHHHHHc-cCCCccCcCHHHHhcCC-------CCCeeech-HHHHHHHHHhhhhhccccceEEEEcceeeeEeCC
Confidence 567888999998 899999954 555553 59999999 9999999987665433322 222 3335999999
Q ss_pred ccCCCCeEEEEEEEeC----------CEEEEEEEEe-eCCcEEEece
Q psy11115 89 PVLPGQTLRTDMWQES----------NRIHFQTSVA-ETNQVVISGA 124 (203)
Q Consensus 89 PV~PGDtL~v~~w~~g----------~~v~f~~~v~-~~G~~VLsgg 124 (203)
||+|||+|+++.+..+ +.+.+++.+. ++|++|+++.
T Consensus 88 pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~v~~~~ 134 (140)
T cd03454 88 PVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQRGEVVLTFE 134 (140)
T ss_pred CCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcCCCCEEEEEE
Confidence 9999999999988531 2567777774 7899999883
No 17
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=99.66 E-value=8.6e-16 Score=123.94 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=67.5
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCC---ceEEEEEEEe
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDP---ALFKSLKVRF 86 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~---~~l~s~~vRF 86 (203)
..+.+++..||+++||+||+|.| ||++. +|+++|+|| ||+++++.+.+.+++...++ ..+...++||
T Consensus 23 ~vt~~di~~FA~~sgD~nPiH~D~e~A~~~-------gfg~~Ia~G-~~t~sl~~~l~~~~~~~~~~~~~~~~g~~~~rF 94 (149)
T cd03450 23 TVDQERIDQFADATGDHQWIHVDPERAAAE-------PFGGTIAHG-FLTLSLLPALTPQLFRVEGVKMGVNYGLDKVRF 94 (149)
T ss_pred EECHHHHHHHHHhhCCCCccccCHHHHhhC-------CCCCeEECH-HHHHHHHHHHHHhcccCCCceEEEEeeccEEEe
Confidence 35778999999999999999965 44433 469999999 99999999998887542222 2345568999
Q ss_pred ccccCCCCeEEEEEEEe
Q psy11115 87 AKPVLPGQTLRTDMWQE 103 (203)
Q Consensus 87 ~~PV~PGDtL~v~~w~~ 103 (203)
.+||+|||+|++++.+.
T Consensus 95 ~~PV~~GDtl~~~~~V~ 111 (149)
T cd03450 95 PAPVPVGSRVRGRFTLL 111 (149)
T ss_pred CcceeCCcEEEEEEEEE
Confidence 99999999999998764
No 18
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=99.57 E-value=3.3e-14 Score=116.72 Aligned_cols=111 Identities=12% Similarity=0.071 Sum_probs=78.5
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHc----CCCCc---eEEEE
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYA----GNDPA---LFKSL 82 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~----~gd~~---~l~s~ 82 (203)
..+.+++..||+++||+||+|.| ||+.+ +|+++|+|| ++. +++...+...+. .|-+. ...++
T Consensus 19 ~Vt~~~I~~FA~~~GD~nPlH~D~eyA~~s-------~fg~~IApg-t~~-~~~~~~~~~~~~~~~~~g~~~~~~v~~~q 89 (166)
T PRK13691 19 VVGREQIRQFARAVKCDHPAFFSEDAAAEL-------GYDALVAPL-TFV-TIFAKYVQLDFFRHVDVGMETMQIVQVDQ 89 (166)
T ss_pred EECHHHHHHHHHHHCCCCCcccCHHHHHhC-------CCCCcccCH-HHH-HHHHHHhccccccccccCCCcceeeeeee
Confidence 44688999999999999999954 55554 459999999 887 444433333221 11111 12356
Q ss_pred EEEeccccCCCCeEEEEEEEeC-------CEEEEEEEE-eeCCcEEEeceEEEEeeC
Q psy11115 83 KVRFAKPVLPGQTLRTDMWQES-------NRIHFQTSV-AETNQVVISGAYVDLKSS 131 (203)
Q Consensus 83 ~vRF~~PV~PGDtL~v~~w~~g-------~~v~f~~~v-~~~G~~VLsgg~a~l~~~ 131 (203)
+.+|.+||+|||+|++++++.+ +.+.+++.+ +|+|++|+.+....+...
T Consensus 90 ~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ~Ge~V~~~~~~~~~~~ 146 (166)
T PRK13691 90 RFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTNDDGELVMEAYTTLMGQQ 146 (166)
T ss_pred EEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECCCCCEEEEEEEEEEEec
Confidence 8899999999999999987642 357777776 488999999855555544
No 19
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=99.50 E-value=6e-14 Score=136.39 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=80.5
Q ss_pred ccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCC-ceEEEEEEEeccc
Q psy11115 13 TRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDP-ALFKSLKVRFAKP 89 (203)
Q Consensus 13 ~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~-~~l~s~~vRF~~P 89 (203)
.+.+++..|++++||+||||.| ||+.+ +|+++|+|| |++++++.+.+..+. ++.. ..+...++||.+|
T Consensus 541 vt~~dI~~FA~~sgD~nPiH~D~e~A~~s-------~fg~~Ia~G-~l~~sl~~~l~~~~~-~~~~~~~~g~~~~rF~~P 611 (663)
T TIGR02278 541 VTEADIALFAALSGDHFYAHMDEIAARES-------FFGKRVAHG-YFVLSAAAGLFVDPA-PGPVLANYGLENLRFLEP 611 (663)
T ss_pred EcHHHHHHHHHhhCCCCcccCCHHHHhhC-------CCCCceeCH-HHHHHHHHHHhhccC-ccchhhhcccceEEEcCC
Confidence 6788999999999999999965 55444 469999999 999999998876653 2211 1233469999999
Q ss_pred cCCCCeEEEEEEEeC---------CEEEEEEEEe-eCCcEEEeceE
Q psy11115 90 VLPGQTLRTDMWQES---------NRIHFQTSVA-ETNQVVISGAY 125 (203)
Q Consensus 90 V~PGDtL~v~~w~~g---------~~v~f~~~v~-~~G~~VLsgg~ 125 (203)
|+|||||++++++.+ +.+.+++.+. ++|++|+++..
T Consensus 612 V~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~nq~G~~Vl~~~~ 657 (663)
T TIGR02278 612 VGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVNQNGEPVATYDV 657 (663)
T ss_pred CCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEcCCCCEEEEEEE
Confidence 999999999887642 2577888764 77999998743
No 20
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=99.49 E-value=2.5e-13 Score=110.69 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=75.0
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHH--HHHHHHHHHH---H-cCCCCceEEEEE
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAIL--GFSVRHVLRQ---Y-AGNDPALFKSLK 83 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~--G~~ar~v~~~---~-~~gd~~~l~s~~ 83 (203)
..+.+++..||+++||+||+|.| ||+.+ +|+++|+|+ +++. |+........ + +++......+++
T Consensus 19 tvt~~dI~~FA~~~GD~nPlh~D~e~A~~~-------~fg~~iA~~-~~~~~~gl~~~~~~~~~~~l~~~~~~~~~~~q~ 90 (159)
T PRK13692 19 EVEREKIREYAVAVQNDDAAYFEEDAAAEL-------GYKGLLAPL-TFICVFGYKAQSAFFKHANIAVADAQIVQVDQV 90 (159)
T ss_pred EeCHHHHHHHHHHHCCCCCCccCHHHHHhc-------CCCCcccCh-HHHHHhhhhhhhhhhhcccCCCCccceEeeeeE
Confidence 45678999999999999999854 65554 459999999 8753 3322111110 0 011112234589
Q ss_pred EEeccccCCCCeEEEEEEEeC-------CEEEEEEEEe-eCCcEEEeceEEEEe
Q psy11115 84 VRFAKPVLPGQTLRTDMWQES-------NRIHFQTSVA-ETNQVVISGAYVDLK 129 (203)
Q Consensus 84 vRF~~PV~PGDtL~v~~w~~g-------~~v~f~~~v~-~~G~~VLsgg~a~l~ 129 (203)
.||.+||+|||||+++++..+ +.|.+++.+. |+|++|+.+ ...+.
T Consensus 91 ~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq~Ge~V~~~-~~~~~ 143 (159)
T PRK13692 91 LKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDVVQET-YTTLA 143 (159)
T ss_pred EEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcCCCCEEEEE-EEEEE
Confidence 999999999999999887632 3588888764 789999988 44444
No 21
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=99.46 E-value=1.9e-13 Score=133.02 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=79.8
Q ss_pred eccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCC-ceEEEEEEEecc
Q psy11115 12 LTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDP-ALFKSLKVRFAK 88 (203)
Q Consensus 12 ~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~-~~l~s~~vRF~~ 88 (203)
..+.+++..|+.++||+||||.| ||+.+ +|+++|+|| |++++++.+.+..+. ++.. ..+.-.++||.+
T Consensus 552 tvt~~di~~FA~lsgD~nPiH~D~e~A~~~-------~fg~~ia~G-~l~~sl~~~l~~~~~-~~~~~~~~g~~~~rF~~ 622 (675)
T PRK11563 552 TVTEADIVNFACLSGDTFYAHMDEIAAAAN-------FFGGRVAHG-YFVLSAAAGLFVDPA-PGPVLANYGLENLRFLT 622 (675)
T ss_pred EEcHHHHHHHHHhhCCCCccccCHHHHhhC-------CCCCceeCH-HHHHHHHHHHhhccC-ccchhhhcccceEEEcC
Confidence 36788999999999999999964 55544 459999999 999999998876653 2211 112234899999
Q ss_pred ccCCCCeEEEEEEEeC---------CEEEEEEEE-eeCCcEEEece
Q psy11115 89 PVLPGQTLRTDMWQES---------NRIHFQTSV-AETNQVVISGA 124 (203)
Q Consensus 89 PV~PGDtL~v~~w~~g---------~~v~f~~~v-~~~G~~VLsgg 124 (203)
||+|||||++++.+.+ +.|.+++.+ +++|++|+++.
T Consensus 623 PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~G~~V~~~~ 668 (675)
T PRK11563 623 PVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTNQDGELVATYD 668 (675)
T ss_pred CCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEECCCCEEEEEE
Confidence 9999999999887532 247788776 47899999884
No 22
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=98.65 E-value=4.7e-07 Score=75.51 Aligned_cols=79 Identities=14% Similarity=0.207 Sum_probs=58.3
Q ss_pred CCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeCCcEEEeceE
Q psy11115 49 PALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAETNQVVISGAY 125 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~G~~VLsgg~ 125 (203)
+.+|+|| .++++.+...+... .++........++||.+||+|||+|.++++... +...+++.+.++|++|+.|..
T Consensus 100 ~~~i~hG-~f~~aqa~~la~~~-~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~v~g~~V~ege~ 177 (185)
T PRK04424 100 KTGIARG-HHLFAQANSLAVAV-IDAELALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSYVGDELVFRGKF 177 (185)
T ss_pred CCCeecH-HHHHHHHHHHHHHh-cCCcEEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEEECCEEEEEEEE
Confidence 4679999 99999888643332 244444455569999999999999999998754 456777777788999988844
Q ss_pred EEEe
Q psy11115 126 VDLK 129 (203)
Q Consensus 126 a~l~ 129 (203)
..+.
T Consensus 178 ~~~~ 181 (185)
T PRK04424 178 IMYR 181 (185)
T ss_pred EEEE
Confidence 4433
No 23
>KOG4170|consensus
Probab=98.51 E-value=5.9e-08 Score=75.31 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=37.1
Q ss_pred cchHHHHHHHHhhhhcCccccceeceEEEEEEeeCCeeeeecc
Q psy11115 159 LISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGKKADTWS 201 (203)
Q Consensus 159 l~s~~vF~~i~~~i~~~~~lvkkvn~vf~~~Itk~gk~~~~Wt 201 (203)
++|+.||+.|.+++++ ++||||++||||||+++++....||
T Consensus 2 ~~~~~i~e~i~~~l~~--~~vkkvg~vfqfni~~~~~~~~~w~ 42 (113)
T KOG4170|consen 2 FKSDEIFEKIKEHLKE--DLVKKVGAVFQFNITDADGGQETWT 42 (113)
T ss_pred CccHHHHHHHHHHhhH--HHHHHHhhEEEEEEecCCCCeEEEE
Confidence 5789999999999964 5999999999999999977777997
No 24
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.40 E-value=5.6e-06 Score=65.52 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=54.4
Q ss_pred CCeeeehHHHH---HHHHHHHHHHHHcC--CCCceEEEE-EEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeCCcE
Q psy11115 49 PALFKSGYPAI---LGFSVRHVLRQYAG--NDPALFKSL-KVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAETNQV 119 (203)
Q Consensus 49 p~~IaHG~m~T---~G~~ar~v~~~~~~--gd~~~l~s~-~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~G~~ 119 (203)
+.+|+|| .+. ++.++..+.....+ +....+.++ ++||.+||+|||+|+++++... +.+.+++.+.++|++
T Consensus 56 ~~pi~PG-~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd~l~i~~~i~~~~~~~v~~~~~~~~~g~~ 134 (147)
T PRK00006 56 GYPVMPG-VLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGDQLILEVELLKQRRGIWKFKGVATVDGKL 134 (147)
T ss_pred CCCcCch-hHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEECCEE
Confidence 4689999 777 55555443322211 222234444 6999999999999999998643 568888888788989
Q ss_pred EEeceEEEEe
Q psy11115 120 VISGAYVDLK 129 (203)
Q Consensus 120 VLsgg~a~l~ 129 (203)
|+.+ .+.+.
T Consensus 135 v~~~-~~~~~ 143 (147)
T PRK00006 135 VAEA-ELMFA 143 (147)
T ss_pred EEEE-EEEEE
Confidence 9887 44443
No 25
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.31 E-value=7.3e-06 Score=62.69 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=53.1
Q ss_pred CCeeeehHHHH---HHHHHHHHHHHHc---CCCCc-eEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeCCc
Q psy11115 49 PALFKSGYPAI---LGFSVRHVLRQYA---GNDPA-LFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAETNQ 118 (203)
Q Consensus 49 p~~IaHG~m~T---~G~~ar~v~~~~~---~gd~~-~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~G~ 118 (203)
+.+|+|| .+. ++.++........ .+... .....++||.+||+|||+|+++++... +.+.+++.+..+|+
T Consensus 41 ~~pi~Pg-~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~~~g~ 119 (131)
T cd01288 41 GNPIMPG-VLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAYVDGK 119 (131)
T ss_pred CCCcCCc-hHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEEECCE
Confidence 5689999 888 4444433322211 11112 233478899999999999999998643 57888888888888
Q ss_pred EEEeceEEEE
Q psy11115 119 VVISGAYVDL 128 (203)
Q Consensus 119 ~VLsgg~a~l 128 (203)
++.++ .+.+
T Consensus 120 ~v~~~-~~~~ 128 (131)
T cd01288 120 LVAEA-ELMF 128 (131)
T ss_pred EEEEE-EEEE
Confidence 88877 5444
No 26
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=98.19 E-value=2.8e-05 Score=60.92 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=52.3
Q ss_pred cCCC-CeeeehHHHHHHHHHHHH---HHHHcC---C--CCceEEE-EEEEeccccCCCCeEEEEEEEe---CCEEEEEEE
Q psy11115 46 GNDP-ALFKSGYPAILGFSVRHV---LRQYAG---N--DPALFKS-LKVRFAKPVLPGQTLRTDMWQE---SNRIHFQTS 112 (203)
Q Consensus 46 g~~p-~~IaHG~m~T~G~~ar~v---~~~~~~---g--d~~~l~s-~~vRF~~PV~PGDtL~v~~w~~---g~~v~f~~~ 112 (203)
|.|| .+++.| .+..-.++... ..+... + ....+.+ -++||.+||+|||+|+++++.. ++.+.++++
T Consensus 45 gHFp~~pv~Pg-~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~ 123 (140)
T TIGR01750 45 GHFPEKPIMPG-VLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGE 123 (140)
T ss_pred CCCcCcCcChH-HHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEE
Confidence 3445 457888 55544444333 211111 1 1224555 4899999999999999998864 356888888
Q ss_pred EeeCCcEEEeceEEEE
Q psy11115 113 VAETNQVVISGAYVDL 128 (203)
Q Consensus 113 v~~~G~~VLsgg~a~l 128 (203)
+..+|++|.++ .+.+
T Consensus 124 ~~~~g~~va~~-~~~~ 138 (140)
T TIGR01750 124 ATVDGKVVAEA-EITF 138 (140)
T ss_pred EEECCEEEEEE-EEEE
Confidence 88888888876 5543
No 27
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=98.08 E-value=9.3e-06 Score=62.72 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=61.3
Q ss_pred eeccchhhHhhhhccCCCCCCChh--hhhhhhhhhhhcCCCCeeeehHHHHHHHHHHH--HHHHHcCCCCceE--EEEEE
Q psy11115 11 DLTRGNDQVYLSGLDHHQIGIHLG--FSVRHVLRQYAGNDPALFKSGYPAILGFSVRH--VLRQYAGNDPALF--KSLKV 84 (203)
Q Consensus 11 ~~~~~~~~~~~a~ldgD~npih~~--~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~--v~~~~~~gd~~~l--~s~~v 84 (203)
..-++.++.+|+..-||+||+|.+ +|+.. ++++.+++- ++.+.+.-.. +... .+.+..++ .+++.
T Consensus 12 ~~v~~~~i~~ya~avg~~~p~~~d~~~a~~~-------~~~~~~apP-t~~~~~~~~~~~~~~~-~~~~~~~~vh~~~~~ 82 (132)
T PF13452_consen 12 YTVTRRDIRRYALAVGDPNPLYLDEEYARAA-------GHGGLIAPP-TFAVVLAWPAPAMFPD-LGFDLTRLVHGEQDI 82 (132)
T ss_dssp EEE-HHHHHHHHHHTT-CTTHHHHCTSS--T-------TSTT-B--G-GGHHHHHHHCCGGCGC-CSS-GGGEEEEEEEE
T ss_pred EEECHHHHHHHHHHhCcCCccccCHhHhhcc-------CCCCcccCH-HHHhhhhcccceeeec-CCCChhhEEecCcEE
Confidence 445678889999999999998754 44433 358999998 6655444432 2222 23344444 48999
Q ss_pred EeccccCCCCeEEEEEEEe--------CCE--EEEEEEEe-eCCcEEEe
Q psy11115 85 RFAKPVLPGQTLRTDMWQE--------SNR--IHFQTSVA-ETNQVVIS 122 (203)
Q Consensus 85 RF~~PV~PGDtL~v~~w~~--------g~~--v~f~~~v~-~~G~~VLs 122 (203)
+|-+|++|||+|+++.... |.. +.+++... ++|++|..
T Consensus 83 ~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~~Ge~v~t 131 (132)
T PF13452_consen 83 EFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQDGELVAT 131 (132)
T ss_dssp EESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-CTTEEEEE
T ss_pred EEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCEEEe
Confidence 9999999999999886642 222 44455543 77888864
No 28
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.92 E-value=0.00012 Score=69.21 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=54.0
Q ss_pred CCeeeehHHHHHHHHHHH---HHHHHcCC---CCceEEEE-EEEeccccCCCCeEEEEEEEe----CCEEEEEEEEeeCC
Q psy11115 49 PALFKSGYPAILGFSVRH---VLRQYAGN---DPALFKSL-KVRFAKPVLPGQTLRTDMWQE----SNRIHFQTSVAETN 117 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~---v~~~~~~g---d~~~l~s~-~vRF~~PV~PGDtL~v~~w~~----g~~v~f~~~v~~~G 117 (203)
+.+|+|| .+..-+++.. ++....++ ....+.++ ++||.+||+|||+|++++... ++.+.|++.+.++|
T Consensus 369 g~PI~PG-VL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~vdG 447 (464)
T PRK13188 369 GNPVMPG-VLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAYVNG 447 (464)
T ss_pred CCCcccc-HHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEEECC
Confidence 4689999 8877444433 32211121 12346666 899999999999999998743 35678999888899
Q ss_pred cEEEeceEEEE
Q psy11115 118 QVVISGAYVDL 128 (203)
Q Consensus 118 ~~VLsgg~a~l 128 (203)
++|+.+ ...+
T Consensus 448 elVaea-el~~ 457 (464)
T PRK13188 448 KLVCEA-ELMA 457 (464)
T ss_pred EEEEEE-EEEE
Confidence 999877 4433
No 29
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=97.91 E-value=0.00039 Score=46.25 Aligned_cols=74 Identities=23% Similarity=0.264 Sum_probs=57.4
Q ss_pred CCeeeehHHHHHHHHHHHHHHHHcC----CCCceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeC-CcEE
Q psy11115 49 PALFKSGYPAILGFSVRHVLRQYAG----NDPALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAET-NQVV 120 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~v~~~~~~----gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~-G~~V 120 (203)
...++|| .+...++.+....++.. +....+.++.++|.+|+++||.|.+++|..+ ..+.+++...+. |+++
T Consensus 14 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (100)
T cd03440 14 GGGIVHG-GLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKLV 92 (100)
T ss_pred cCCccch-HHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEEEEECCCCCEE
Confidence 4567999 88888888888777653 3467889999999999999999999999865 346666666544 7666
Q ss_pred Eec
Q psy11115 121 ISG 123 (203)
Q Consensus 121 Lsg 123 (203)
..+
T Consensus 93 ~~~ 95 (100)
T cd03440 93 ATA 95 (100)
T ss_pred EEE
Confidence 654
No 30
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=97.76 E-value=0.00057 Score=51.91 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=49.5
Q ss_pred CeeeehHHHHHHHHHHHHHHHHcC--------CCCceEEE-EEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeCC
Q psy11115 50 ALFKSGYPAILGFSVRHVLRQYAG--------NDPALFKS-LKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAETN 117 (203)
Q Consensus 50 ~~IaHG~m~T~G~~ar~v~~~~~~--------gd~~~l~s-~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~G 117 (203)
.+++.| .+..=++++....+.+. +....+.+ -+++|.+||+|||+|+++++... +.+.|++.+..+|
T Consensus 41 ~p~lPg-~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~~~~~~~g 119 (131)
T cd00493 41 DPVMPG-VLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFDGRAYVDG 119 (131)
T ss_pred CCCCCc-HHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEEEEEEECC
Confidence 457777 66555555444333321 11123333 58999999999999999998753 5788898887788
Q ss_pred cEEEec
Q psy11115 118 QVVISG 123 (203)
Q Consensus 118 ~~VLsg 123 (203)
+++..+
T Consensus 120 ~~v~~~ 125 (131)
T cd00493 120 KLVAEA 125 (131)
T ss_pred EEEEEE
Confidence 888876
No 31
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=6.7e-05 Score=65.57 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=66.9
Q ss_pred cceeEEeeccchhhHhhhhccCCCCCCChhhhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEE
Q psy11115 5 HRHYQVDLTRGNDQVYLSGLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKV 84 (203)
Q Consensus 5 ~~~~~~~~~~~~~~~~~a~ldgD~npih~~~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~v 84 (203)
|-+++.--++.-++..|..+++|..-||.|. +++++.-|||+.|+|| -+..-++. +.+.+--|.-++++.-
T Consensus 160 ~~w~~~~tptpvllfrYsaltfN~HrIHyD~----~Yat~vEgYpgLVvhG-Pl~atlll----~~~~~~~pq~~~Rf~f 230 (273)
T COG3777 160 GKWLKNFTPTPVLLFRYSALTFNGHRIHYDA----PYATYVEGYPGLVVHG-PLIATLLL----RAFQPFLPQPIRRFRF 230 (273)
T ss_pred CchhhcCCCCchheeehhhhccCceeeeccC----cceeeccCCCCceecc-hHHHHHHH----HHhhhhccccchheec
Confidence 4444444455666677788999999999762 4566667899999999 66555444 4444333455999999
Q ss_pred EeccccCCCCeEEEEEEEeC
Q psy11115 85 RFAKPVLPGQTLRTDMWQES 104 (203)
Q Consensus 85 RF~~PV~PGDtL~v~~w~~g 104 (203)
|=-+|.|++++|++..-..+
T Consensus 231 R~L~p~f~~~~lti~~~l~~ 250 (273)
T COG3777 231 RNLSPAFPNETLTICGSLSG 250 (273)
T ss_pred cccccccCCCCeeEeeEecC
Confidence 99999999999999887765
No 32
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=97.55 E-value=0.0012 Score=45.47 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=33.4
Q ss_pred CCceEEEEEEEeccccCCCCeEEEEEEEe--C-CEEEEEEEEeeCC
Q psy11115 75 DPALFKSLKVRFAKPVLPGQTLRTDMWQE--S-NRIHFQTSVAETN 117 (203)
Q Consensus 75 d~~~l~s~~vRF~~PV~PGDtL~v~~w~~--g-~~v~f~~~v~~~G 117 (203)
......+++++|.+|+.+||+|+++.|.. | ..+.++..+.+.+
T Consensus 29 ~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~~ 74 (79)
T PF03061_consen 29 RGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSED 74 (79)
T ss_dssp EEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEETT
T ss_pred cceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEECC
Confidence 45678899999999999999999999864 3 5677777766443
No 33
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.43 E-value=0.0032 Score=49.32 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=46.0
Q ss_pred cCCC-CeeeehHHHH---HHHHHHHHHHHHcC--CCC------ceEEEEEEEeccccCCCC-eEEEEEEEe------CCE
Q psy11115 46 GNDP-ALFKSGYPAI---LGFSVRHVLRQYAG--NDP------ALFKSLKVRFAKPVLPGQ-TLRTDMWQE------SNR 106 (203)
Q Consensus 46 g~~p-~~IaHG~m~T---~G~~ar~v~~~~~~--gd~------~~l~s~~vRF~~PV~PGD-tL~v~~w~~------g~~ 106 (203)
|.|| .+|+.| -|. ++-++..++.+... ... ....--++||.+||+||| +|++++... ++.
T Consensus 42 gHFp~~Pv~PG-vl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~ 120 (138)
T PF07977_consen 42 GHFPGDPVMPG-VLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGM 120 (138)
T ss_dssp CSTTTS--B-H-HHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTE
T ss_pred cCCCCCCCCCe-EhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCE
Confidence 4455 568998 554 45556556655532 111 124466799999999999 888876532 256
Q ss_pred EEEEEEEeeCCcEEEec
Q psy11115 107 IHFQTSVAETNQVVISG 123 (203)
Q Consensus 107 v~f~~~v~~~G~~VLsg 123 (203)
+.|++.+..+|+.|.+.
T Consensus 121 ~~~~~~~~vdg~~v~~~ 137 (138)
T PF07977_consen 121 AIFDGTAYVDGELVAEA 137 (138)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEECCEEEEEE
Confidence 88888888888888753
No 34
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.23 E-value=0.0055 Score=49.73 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=49.3
Q ss_pred cCCC-Ceeeeh--HHHHHHHHHHHHHHHHcCCCC--c-eEEEEEEEeccccCCCCeEEEEEEEeC----CEEEEEEEEee
Q psy11115 46 GNDP-ALFKSG--YPAILGFSVRHVLRQYAGNDP--A-LFKSLKVRFAKPVLPGQTLRTDMWQES----NRIHFQTSVAE 115 (203)
Q Consensus 46 g~~p-~~IaHG--~m~T~G~~ar~v~~~~~~gd~--~-~l~s~~vRF~~PV~PGDtL~v~~w~~g----~~v~f~~~v~~ 115 (203)
|.|| .+|+.| ++=.++-++..++.+...+.. . ...-.++||.+||.|||.|.+++.... +...+.++...
T Consensus 50 gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid~~kF~~~V~PGd~l~l~~~~~~~~~~~~~~~~~~a~V 129 (147)
T COG0764 50 GHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGIDNAKFKRPVLPGDQLELEVKLLKSRRLGIGKAKGVATV 129 (147)
T ss_pred CcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEecceeecCccCCCCEEEEEEEEEEecccceEEEEEEEEE
Confidence 3455 568888 133445555555556543322 1 244457899999999999999887643 33556666667
Q ss_pred CCcEEEec
Q psy11115 116 TNQVVISG 123 (203)
Q Consensus 116 ~G~~VLsg 123 (203)
+|++|-.+
T Consensus 130 dg~~v~~a 137 (147)
T COG0764 130 DGKVVAEA 137 (147)
T ss_pred CCEEEEEE
Confidence 88886654
No 35
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=97.02 E-value=0.02 Score=41.96 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCeeeehHHHHHHHHHHHHHHHH---c-CCCCceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeC-CcEE
Q psy11115 49 PALFKSGYPAILGFSVRHVLRQY---A-GNDPALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAET-NQVV 120 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~v~~~~---~-~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~-G~~V 120 (203)
...++|| -..++++-.+....+ . ++......+++++|.+|+.+ ++|+++.|... ..+.+++.+.+. |+++
T Consensus 27 ~~g~vhg-g~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 104 (113)
T cd03443 27 PGGIVHG-GAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARARVVKLGRRLAVVEVEVTDEDGKLV 104 (113)
T ss_pred CCCeEeH-HHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEEEEecCceEEEEEEEEECCCCCEE
Confidence 3457999 555555544443222 1 35566789999999999999 99999888653 347777777644 7666
Q ss_pred EeceEEEE
Q psy11115 121 ISGAYVDL 128 (203)
Q Consensus 121 Lsgg~a~l 128 (203)
..+ .+.+
T Consensus 105 a~a-~~~~ 111 (113)
T cd03443 105 ATA-RGTF 111 (113)
T ss_pred EEE-EEEE
Confidence 654 4443
No 36
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=96.96 E-value=0.024 Score=42.85 Aligned_cols=79 Identities=11% Similarity=0.106 Sum_probs=48.2
Q ss_pred CCeeeehHHHHHHHHHHHHHHHH-cCCCCceEEEEEEEeccccCCCCeEEEEEEEe--CC-EEEEEEEEe-eCCcEEEec
Q psy11115 49 PALFKSGYPAILGFSVRHVLRQY-AGNDPALFKSLKVRFAKPVLPGQTLRTDMWQE--SN-RIHFQTSVA-ETNQVVISG 123 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~v~~~~-~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~--g~-~v~f~~~v~-~~G~~VLsg 123 (203)
+.-++|| -+.++++=....... ..+....-.+++++|.+|+.+||+|.++.+.. ++ ...+++.+. ++|+++...
T Consensus 29 ~~g~~HG-G~i~al~D~~~~~~~~~~~~~~~t~~~~i~f~rp~~~G~~l~~~a~v~~~g~~~~~~~~~i~~~~~~~va~~ 107 (114)
T TIGR02286 29 GHGTAHG-GFLFSLADSAFAYACNSYGDAAVAAQCTIDFLRPGRAGERLEAEAVEVSRGGRTGTYDVEVVNQEGELVALF 107 (114)
T ss_pred cCCCchH-HHHHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCEEEEE
Confidence 4568999 444444443322221 12222345688999999999999999988753 43 355666654 566665544
Q ss_pred eEEEEe
Q psy11115 124 AYVDLK 129 (203)
Q Consensus 124 g~a~l~ 129 (203)
..++.
T Consensus 108 -~~t~~ 112 (114)
T TIGR02286 108 -RGTSR 112 (114)
T ss_pred -EEEEE
Confidence 55543
No 37
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=96.85 E-value=0.038 Score=39.18 Aligned_cols=50 Identities=10% Similarity=0.261 Sum_probs=38.0
Q ss_pred CCCceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEee-CCcEEEec
Q psy11115 74 NDPALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAE-TNQVVISG 123 (203)
Q Consensus 74 gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~-~G~~VLsg 123 (203)
+....+.+++++|.+|+++||+|+++.|..+ ..+.+...+.. +|+++..+
T Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ 102 (110)
T cd00586 49 GLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGRKSFTFEQEIFREDGELLATA 102 (110)
T ss_pred CceEEEEEeEeeEcCccCCCCEEEEEEEEEecCcEEEEEEEEEECCCCeEEEEE
Confidence 4456788999999999999999999999865 34555555543 47777766
No 38
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=96.64 E-value=0.036 Score=47.06 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=54.6
Q ss_pred CeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEeeCCcEEEeceEE
Q psy11115 50 ALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVAETNQVVISGAYV 126 (203)
Q Consensus 50 ~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~~~G~~VLsgg~a 126 (203)
+..+||| +.++.+.+++.... +++.-.+.++.+.|.+|+.+| .+++++.. .|++ ...++.+.++|++++.. .+
T Consensus 9 g~~~~GG-~~a~~~~~A~~~~~-~~~~~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q~~~~~~~a-~~ 84 (255)
T PF13622_consen 9 GRVVHGG-YLAQLLAAAARTHA-PPPGFDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQDGKVVATA-TA 84 (255)
T ss_dssp TTCE-HH-HHHHHHHHHHHHCH-TTTSSEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEETTEEEEEE-EE
T ss_pred CCcChhH-HHHHHHHHHHHHhc-cCCCCceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEECCcCEEEE-EE
Confidence 5679997 77788887777775 334468999999999999999 88877764 5654 45667777888877765 56
Q ss_pred EEeeCc
Q psy11115 127 DLKSSV 132 (203)
Q Consensus 127 ~l~~~~ 132 (203)
.+....
T Consensus 85 ~f~~~~ 90 (255)
T PF13622_consen 85 SFGRPE 90 (255)
T ss_dssp EEE--T
T ss_pred EEccCc
Confidence 665443
No 39
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=96.63 E-value=0.027 Score=45.59 Aligned_cols=49 Identities=6% Similarity=0.064 Sum_probs=36.2
Q ss_pred EEEEEEeccccCCCC-eEEEEEEEeC-------CEEEEEEEEeeCCcEEEeceEEEE
Q psy11115 80 KSLKVRFAKPVLPGQ-TLRTDMWQES-------NRIHFQTSVAETNQVVISGAYVDL 128 (203)
Q Consensus 80 ~s~~vRF~~PV~PGD-tL~v~~w~~g-------~~v~f~~~v~~~G~~VLsgg~a~l 128 (203)
..-++||.+||+||| +|+++++... +-+.+++.+..+|++|....-+.+
T Consensus 89 ~~~~~kfr~~v~Pgd~~l~~e~~i~~~~~~~~~~~~~~~~~~~vdg~~v~~a~~~~~ 145 (150)
T cd01287 89 GPGEWKYRGQITPHNKKVTYEVHIKEVGRDGPRPYIIADASLWVDGLRIYEAKDIAV 145 (150)
T ss_pred cceEEEECccCcCCCEEEEEEEEEEEEEccCCccEEEEEEEEEECCEEEEEEEccEE
Confidence 345799999999999 7888877432 447778877788888887644443
No 40
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=96.44 E-value=0.06 Score=44.44 Aligned_cols=72 Identities=15% Similarity=0.020 Sum_probs=43.6
Q ss_pred CeeeehHHHHH---HHHHHHHHHHHcCCCCceEEE-EEEEeccccCCCCeE-EEEEEEe------CCEEEEEEEEeeCCc
Q psy11115 50 ALFKSGYPAIL---GFSVRHVLRQYAGNDPALFKS-LKVRFAKPVLPGQTL-RTDMWQE------SNRIHFQTSVAETNQ 118 (203)
Q Consensus 50 ~~IaHG~m~T~---G~~ar~v~~~~~~gd~~~l~s-~~vRF~~PV~PGDtL-~v~~w~~------g~~v~f~~~v~~~G~ 118 (203)
.+++.| .+.. +-++.+++.+........+.+ -++||.+||+|||++ ++++... ++-+.|++....+|+
T Consensus 72 ~PvmPG-~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~~~kfr~~v~Pgd~~~~l~v~i~~~~~~~~~~~~~~~~i~v~g~ 150 (169)
T TIGR01749 72 DPVMPG-CLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAKKVTYRIHFKRVINRRLVMGIADGEVLVDGR 150 (169)
T ss_pred CCcCch-HHHHHHHHHHHHHHHhccccCCceEEeeccEEEEccCEecCCeEEEEEEEEEEEeecCCcEEEEEEEEEECCE
Confidence 567888 5433 333333332222211223444 389999999999996 5555421 245788888877888
Q ss_pred EEEe
Q psy11115 119 VVIS 122 (203)
Q Consensus 119 ~VLs 122 (203)
+|..
T Consensus 151 ~va~ 154 (169)
T TIGR01749 151 LIYT 154 (169)
T ss_pred EEEE
Confidence 7776
No 41
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=96.36 E-value=0.074 Score=44.02 Aligned_cols=76 Identities=13% Similarity=-0.023 Sum_probs=45.5
Q ss_pred CCC-CeeeehHHHH---HHHHHHHHHHHHcCCCCceEE-EEEEEeccccCCCCe-EEEEEEEe------CCEEEEEEEEe
Q psy11115 47 NDP-ALFKSGYPAI---LGFSVRHVLRQYAGNDPALFK-SLKVRFAKPVLPGQT-LRTDMWQE------SNRIHFQTSVA 114 (203)
Q Consensus 47 ~~p-~~IaHG~m~T---~G~~ar~v~~~~~~gd~~~l~-s~~vRF~~PV~PGDt-L~v~~w~~------g~~v~f~~~v~ 114 (203)
.|| .+++.| .+. |+-++..++.+....+...+. .-++||.++|+|||+ |++++... ++-+.|++...
T Consensus 71 HFp~~PvmPG-~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~ 149 (172)
T PRK05174 71 HFIGDPVMPG-CLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLPTAKKVTYEIDIKRVINRKLVMGIADGRVL 149 (172)
T ss_pred CCCCCCcCch-HHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccCcCCCEEEEEEEEEEEEecCCCCEEEEEEEEE
Confidence 344 578888 443 333332322221111112333 347999999999998 77766532 24578888887
Q ss_pred eCCcEEEec
Q psy11115 115 ETNQVVISG 123 (203)
Q Consensus 115 ~~G~~VLsg 123 (203)
.+|++|...
T Consensus 150 v~g~~va~a 158 (172)
T PRK05174 150 VDGEEIYTA 158 (172)
T ss_pred ECCEEEEEE
Confidence 788887765
No 42
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=96.29 E-value=0.13 Score=38.10 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=55.5
Q ss_pred CCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEeeCCcEEEeceE
Q psy11115 49 PALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVAETNQVVISGAY 125 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~~~G~~VLsgg~ 125 (203)
+++.+|| -+.++.+..+....+ + +...+.++.+-|..|+.|+..++.++.. +|+. ...++.+.++|++++.. .
T Consensus 14 ~~~~~~G-G~l~a~a~~Aa~~~~-~-~~~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q~g~~~~~a-~ 89 (94)
T cd03445 14 QGRGVFG-GQVLAQALVAAARTV-P-DDRVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQNGKVIFTA-T 89 (94)
T ss_pred CCCceEH-HHHHHHHHHHHHhhC-C-CCCCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEECCEEEEEE-E
Confidence 3678999 888888888888886 3 3356899999999999999877777664 5643 44556666888776654 4
Q ss_pred EEE
Q psy11115 126 VDL 128 (203)
Q Consensus 126 a~l 128 (203)
+.+
T Consensus 90 ~sf 92 (94)
T cd03445 90 ASF 92 (94)
T ss_pred EEE
Confidence 433
No 43
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=96.17 E-value=0.11 Score=40.95 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=39.6
Q ss_pred CCceEEEE-EEEeccccCC-CCeEEEEEEE---eC-CEEEEEEEEeeCCcEEEeceEEEE
Q psy11115 75 DPALFKSL-KVRFAKPVLP-GQTLRTDMWQ---ES-NRIHFQTSVAETNQVVISGAYVDL 128 (203)
Q Consensus 75 d~~~l~s~-~vRF~~PV~P-GDtL~v~~w~---~g-~~v~f~~~v~~~G~~VLsgg~a~l 128 (203)
....|.++ ++||.+||+| ||+|++++.. .+ +-..|++.+..+|+++.++ ...+
T Consensus 76 ~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~~~~~~~v~~~~va~a-~l~~ 134 (138)
T cd01289 76 RPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGVFECTIEDQGGVLASG-RLNV 134 (138)
T ss_pred CcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEEEEEEEEECCEEEEEE-EEEE
Confidence 34457765 7999999999 9999997764 23 5678888888888877766 4443
No 44
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=95.99 E-value=0.23 Score=36.73 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=35.4
Q ss_pred CceEEEE-EEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeC------CcEEEeceEEEEe
Q psy11115 76 PALFKSL-KVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAET------NQVVISGAYVDLK 129 (203)
Q Consensus 76 ~~~l~s~-~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~------G~~VLsgg~a~l~ 129 (203)
......+ +++|.+|+.+||.|.++.|... +.+.+++.+.+. ++++.++ ..++.
T Consensus 49 ~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~-~~~~v 111 (123)
T cd03442 49 RVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSA-YFTFV 111 (123)
T ss_pred cEEEEEECceEEcCccccCcEEEEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEE-EEEEE
Confidence 3445567 7999999999999999998643 456666655422 2455555 44443
No 45
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=95.96 E-value=0.17 Score=38.09 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=45.0
Q ss_pred CCeeeehHHH-HHHHHHHH--HHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEe-eCCcEEE
Q psy11115 49 PALFKSGYPA-ILGFSVRH--VLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVA-ETNQVVI 121 (203)
Q Consensus 49 p~~IaHG~m~-T~G~~ar~--v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~-~~G~~VL 121 (203)
+.-++|||++ ++.=.+-. +.....++....-.+++++|.+|+..| .|+++.+. .|++ +.+++.+. ++|++|-
T Consensus 31 ~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~a~v~~~gr~~~~~~~~i~~~~g~~va 109 (117)
T TIGR00369 31 PFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAIAQVVHLGRQTGVAEIEIVDEQGRLCA 109 (117)
T ss_pred CcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEEEEEEecCceEEEEEEEEECCCCCEEE
Confidence 4567999533 22211111 112222333334568999999999999 89887765 3444 55677664 5677666
Q ss_pred eceEEE
Q psy11115 122 SGAYVD 127 (203)
Q Consensus 122 sgg~a~ 127 (203)
.+ ...
T Consensus 110 ~~-~~t 114 (117)
T TIGR00369 110 LS-RGT 114 (117)
T ss_pred EE-EEE
Confidence 54 443
No 46
>PRK10694 acyl-CoA esterase; Provisional
Probab=95.78 E-value=0.3 Score=38.57 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHcCCCCceEEEEE-EEeccccCCCCeEEEEEEEeC
Q psy11115 70 QYAGNDPALFKSLK-VRFAKPVLPGQTLRTDMWQES 104 (203)
Q Consensus 70 ~~~~gd~~~l~s~~-vRF~~PV~PGDtL~v~~w~~g 104 (203)
.++. ......+++ +.|.+|++.||.|++..|...
T Consensus 48 ~~~~-~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~ 82 (133)
T PRK10694 48 EIAH-GRVVTVRVEGMTFLRPVAVGDVVCCYARCVK 82 (133)
T ss_pred HHcC-CceEEEEECceEECCCcccCcEEEEEEEEEE
Confidence 3443 445677884 599999999999999988753
No 47
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=95.17 E-value=0.32 Score=34.79 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=49.7
Q ss_pred CeeeehHHHHHHHHHHHHHHHHcC---CCCceEEEEEEEeccccCCCCeEEEEEEEe--C-CEEEEEEEEeeC-CcEEEe
Q psy11115 50 ALFKSGYPAILGFSVRHVLRQYAG---NDPALFKSLKVRFAKPVLPGQTLRTDMWQE--S-NRIHFQTSVAET-NQVVIS 122 (203)
Q Consensus 50 ~~IaHG~m~T~G~~ar~v~~~~~~---gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~--g-~~v~f~~~v~~~-G~~VLs 122 (203)
+.++|| -+.++++=.++...... .....-.++++.|..|..+|+.+..+++.. + +....++.+.++ |+.|.+
T Consensus 14 ~~~~hg-g~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~G~lva~ 92 (99)
T cd00556 14 DRRVFG-GQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQRDGKLVAS 92 (99)
T ss_pred CHHHHH-HHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECCCCcEEEE
Confidence 567899 44445544444433322 124567789999999999999999888753 4 456667777654 888876
Q ss_pred c
Q psy11115 123 G 123 (203)
Q Consensus 123 g 123 (203)
.
T Consensus 93 ~ 93 (99)
T cd00556 93 A 93 (99)
T ss_pred E
Confidence 6
No 48
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=94.98 E-value=0.24 Score=37.17 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=37.9
Q ss_pred CceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeCCcEEEeceEEEE
Q psy11115 76 PALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAETNQVVISGAYVDL 128 (203)
Q Consensus 76 ~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~G~~VLsgg~a~l 128 (203)
...+.++.++|.+|+..||+|+++.|..+ .++.+...+..+|+++..+ ...+
T Consensus 52 ~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~~~~~~~~~~i~~~g~~~a~~-~~~~ 106 (126)
T TIGR02799 52 VFVVRSMELDYLKPARLDDLLTVTTRVVELKGASLVFAQEVRRGDTLLCEA-TVEV 106 (126)
T ss_pred EEEEEEEEEEEcCcccCCCEEEEEEEEEecCceEEEEEEEEEeCCEEEEEE-EEEE
Confidence 45688999999999999999999999765 3455544444567766655 4433
No 49
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=94.84 E-value=0.38 Score=37.91 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=41.0
Q ss_pred ceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEeeCCcEEEeceEEEEeeC
Q psy11115 77 ALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAETNQVVISGAYVDLKSS 131 (203)
Q Consensus 77 ~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~~G~~VLsgg~a~l~~~ 131 (203)
-.+.+..++|.+|++.||.|+++.|... .++.|.-.+...++++..+ ...+...
T Consensus 57 ~~v~~~~i~y~~p~~~~d~l~v~~~v~~~~~~s~~~~~~i~~~~~l~a~~-~~~~V~v 113 (137)
T COG0824 57 FVVVEAEIDYLRPARLGDVLTVRTRVEELGGKSLTLGYEIVNEDELLATG-ETTLVCV 113 (137)
T ss_pred EEEEEEEeEECCCccCCCEEEEEEEEEeecCeEEEEEEEEEeCCEEEEEE-EEEEEEE
Confidence 4688999999999999999999999754 4788877776555566655 5544444
No 50
>COG5496 Predicted thioesterase [General function prediction only]
Probab=94.75 E-value=0.61 Score=37.20 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCCC-ceEEEEEEEeccccCCCCeEEEEEEE---eCCEEEEEEEEeeCCcEEEeceEEEEe
Q psy11115 61 GFSVRHVLRQYAGNDP-ALFKSLKVRFAKPVLPGQTLRTDMWQ---ESNRIHFQTSVAETNQVVISGAYVDLK 129 (203)
Q Consensus 61 G~~ar~v~~~~~~gd~-~~l~s~~vRF~~PV~PGDtL~v~~w~---~g~~v~f~~~v~~~G~~VLsgg~a~l~ 129 (203)
=.+++.+++.+++++- +.-....+|=.+|+.||.++++.+.. +|+++.|+..+.++|+.+..|....+.
T Consensus 41 E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~~~~~Ig~g~h~R~i 113 (130)
T COG5496 41 ENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAMEGGDKIGEGTHTRVI 113 (130)
T ss_pred HHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEeeCCcEEeeeEEEEEE
Confidence 5677888888887654 34457788999999999999988764 568899999988888888877544433
No 51
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=94.56 E-value=0.33 Score=37.10 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEe-eCCcEEEeceEEEEe
Q psy11115 74 NDPALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVA-ETNQVVISGAYVDLK 129 (203)
Q Consensus 74 gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~-~~G~~VLsgg~a~l~ 129 (203)
|-...+.+.+++|.+|++.||+|+++.|... .++.|..... ++|+++..+ ...+.
T Consensus 51 ~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~~~s~~~~~~i~~~~g~~~a~~-~~~~v 109 (130)
T PRK10800 51 RVAFVVRKMTVEYYAPARLDDMLEVQSEITSMRGTSLTFTQRIVNAEGTLLNEA-EVLIV 109 (130)
T ss_pred CCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeCcEEEEEEEEEEcCCCeEEEEE-EEEEE
Confidence 3456688999999999999999999999764 3444554443 467777666 44444
No 52
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=94.39 E-value=0.42 Score=35.04 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEe-eCCcEEEec
Q psy11115 75 DPALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVA-ETNQVVISG 123 (203)
Q Consensus 75 d~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~-~~G~~VLsg 123 (203)
-...+.++.++|.+|+..||+|+++.|..+ .++.+.-.+. +++..+...
T Consensus 47 ~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s~~~~~~i~~~~~~~~~~~ 99 (117)
T TIGR00051 47 VAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFSFVFSQEIFNEDEALLKAA 99 (117)
T ss_pred CEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEEEEEEEEEEeCCCcEEEee
Confidence 345688999999999999999999999865 2444444433 344444333
No 53
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.34 E-value=1.6 Score=41.50 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=53.4
Q ss_pred CceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEe-eCCcEEEeceEEEEeeCcccccCCCCCCCCCCccccc
Q psy11115 76 PALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVA-ETNQVVISGAYVDLKSSVQMRKTGATSRPPGATLHTH 151 (203)
Q Consensus 76 ~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~-~~G~~VLsgg~a~l~~~~~~~~~~~~~~~~~~~~~~~ 151 (203)
...+.++.++|.+|++.||+|+++.|..+ ..+.|..... ++|+++..+ ...+...... +..+.+.
T Consensus 395 ~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~~~~s~~~~~~i~~~~g~l~A~g-~~~~v~vD~~--trr~~~i-------- 463 (495)
T PRK07531 395 SYYTVETHIRHLGEAKAGQALHVETQLLSGDEKRLHLFHTLYDAGGELIATA-EHMLLHVDLK--AGKAVPA-------- 463 (495)
T ss_pred cEEEEEEEEEEcccCCCCCEEEEEEEEEecCCcEEEEEEEEECCCCcEEEEE-EEEEEEEECC--CCccCCC--------
Confidence 44688999999999999999999999764 3455554443 467777666 4443333221 1111122
Q ss_pred ccCCcCCcchHHHHHHHHhhhhcCcccc
Q psy11115 152 RVNAADDLISQAVFDGMLERVQADPSLT 179 (203)
Q Consensus 152 ~~~~~~~l~s~~vF~~i~~~i~~~~~lv 179 (203)
.+.+.+.|.+.+++++++.
T Consensus 464 ---------P~e~r~~l~~~~~~~~~~~ 482 (495)
T PRK07531 464 ---------PAAVLAALKPIAEAHAELP 482 (495)
T ss_pred ---------CHHHHHHHHHHHHhcccCC
Confidence 2677888887776655443
No 54
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.19 E-value=1.6 Score=34.21 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCeeeehHHHHHHHHHH--HHHHHHcCCCCceE---EEEEEEeccccCCCCeEEEE--EEEeCCEE-EEEEEEe-eC-Cc
Q psy11115 49 PALFKSGYPAILGFSVR--HVLRQYAGNDPALF---KSLKVRFAKPVLPGQTLRTD--MWQESNRI-HFQTSVA-ET-NQ 118 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar--~v~~~~~~gd~~~l---~s~~vRF~~PV~PGDtL~v~--~w~~g~~v-~f~~~v~-~~-G~ 118 (203)
+.-++|| -+.++++=- .+.-+. ..+.... .+++++|.+|+.+|+ |+++ +.+.|+++ ..++.+. ++ ++
T Consensus 49 ~~G~~HG-G~i~alaD~a~~~a~~~-~~~~~~~~~ti~l~i~flr~~~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~ 125 (141)
T COG2050 49 PGGILHG-GVIAALADSAAGLAANS-LLGVVALAVTLELNINFLRPVKEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGR 125 (141)
T ss_pred CCceeeH-HHHHHHHHHHHHHHHhh-ccCccceeEEEEEEehhccCCCCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCe
Confidence 6679999 444433321 111111 1222223 589999999999999 7655 55677653 3466665 33 45
Q ss_pred EEEeceEEEEe
Q psy11115 119 VVISGAYVDLK 129 (203)
Q Consensus 119 ~VLsgg~a~l~ 129 (203)
+|..+ ..++.
T Consensus 126 lva~~-~~t~~ 135 (141)
T COG2050 126 LVAKG-TGTYA 135 (141)
T ss_pred EEEEE-EEEEE
Confidence 66655 55444
No 55
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=93.07 E-value=3.9 Score=33.64 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=37.0
Q ss_pred eehH--HHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEEe--CC---EEEEEEEEe
Q psy11115 53 KSGY--PAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQE--SN---RIHFQTSVA 114 (203)
Q Consensus 53 aHG~--m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~--g~---~v~f~~~v~ 114 (203)
+||| |.-+=.++-.....++.+..--..==++.|.+||..||.|.+..|.. |+ .|.+++++.
T Consensus 31 ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTSm~V~Vev~~~ 99 (157)
T COG1607 31 IFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTSMEVGVEVWAE 99 (157)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCcccEEEEEEEEEe
Confidence 5663 22223333334555565533222233579999999999999998874 43 355666654
No 56
>PLN02322 acyl-CoA thioesterase
Probab=93.03 E-value=2.6 Score=34.32 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=46.5
Q ss_pred CCeeeehHHHHHHHHHHH--HHHHHc-CCCCceEEEEEEEeccccCCCCeEEEEEEEe--CCE-EEEEEEEee------C
Q psy11115 49 PALFKSGYPAILGFSVRH--VLRQYA-GNDPALFKSLKVRFAKPVLPGQTLRTDMWQE--SNR-IHFQTSVAE------T 116 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~--v~~~~~-~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~--g~~-v~f~~~v~~------~ 116 (203)
|.-++||| ..+.++=-+ +..... ++....=.++++.|.+|+.+||+|+++.+.. |++ ..+++.+.+ +
T Consensus 41 ~~G~vHGG-v~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~ 119 (154)
T PLN02322 41 PFKVLHGG-VSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKA 119 (154)
T ss_pred CCCCccHH-HHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCCCCEEEEEEEEEecCCCEEEEEEEEEECCCCccc
Confidence 56689994 333333111 111111 2233444689999999999999999988754 543 456666543 1
Q ss_pred CcEEEeceEEEEee
Q psy11115 117 NQVVISGAYVDLKS 130 (203)
Q Consensus 117 G~~VLsgg~a~l~~ 130 (203)
+...++-+..++..
T Consensus 120 ~~~lva~a~~T~~~ 133 (154)
T PLN02322 120 NKILISSSRVTLIC 133 (154)
T ss_pred CCeEEEEEEEEEEE
Confidence 12444444666653
No 57
>PRK10293 acyl-CoA esterase; Provisional
Probab=92.62 E-value=2.6 Score=33.33 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=46.1
Q ss_pred CCCeeeehHHHHHHHHHH--HHHH--HHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEe-eCCcE
Q psy11115 48 DPALFKSGYPAILGFSVR--HVLR--QYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVA-ETNQV 119 (203)
Q Consensus 48 ~p~~IaHG~m~T~G~~ar--~v~~--~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~-~~G~~ 119 (203)
.|.-++|||. ++.++=- .+.. ...++.+..=.++++.|.+|+..| +|+++.+. .|++ ..+++.+. ++|++
T Consensus 48 n~~G~lHGGv-~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~~g-~l~a~a~vv~~Gr~~~~~~~~v~d~~g~l 125 (136)
T PRK10293 48 QPFGLLHGGA-SVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREG-RVRGVCKPLHLGSRHQVWQIEIFDEKGRL 125 (136)
T ss_pred CCcCcccHHH-HHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccCCc-eEEEEEEEEecCCCEEEEEEEEEeCCCCE
Confidence 3667899953 2222211 1111 111233444568999999999988 69888875 4544 56777776 45666
Q ss_pred EEeceEEEE
Q psy11115 120 VISGAYVDL 128 (203)
Q Consensus 120 VLsgg~a~l 128 (203)
+-.+ ...+
T Consensus 126 ~A~~-~~t~ 133 (136)
T PRK10293 126 CCSS-RLTT 133 (136)
T ss_pred EEEE-EEEE
Confidence 5544 5443
No 58
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=92.60 E-value=1.4 Score=37.83 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=57.7
Q ss_pred eeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEeeCCcEEEeceEEE
Q psy11115 51 LFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVAETNQVVISGAYVD 127 (203)
Q Consensus 51 ~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~~~G~~VLsgg~a~ 127 (203)
.-+.| -+.+|.+..+..+.+. +.-.+.++.+-|.+|+.|+..+++++++ +|+. ...++.+.|+|++++.. .+.
T Consensus 21 ~~~fG-G~~~Aqal~Aa~~tv~--~~~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q~g~~~~~a-~as 96 (271)
T TIGR00189 21 NRVFG-GQVVGQALAAASKTVP--EEFIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQHGKTIFTL-QAS 96 (271)
T ss_pred CceEc-cHHHHHHHHHHHhcCC--CCCCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEECCEEEEEE-EEE
Confidence 35788 7888888888888862 3456889999999999999988888875 4544 44566677888887766 677
Q ss_pred Eee
Q psy11115 128 LKS 130 (203)
Q Consensus 128 l~~ 130 (203)
+..
T Consensus 97 f~~ 99 (271)
T TIGR00189 97 FQA 99 (271)
T ss_pred ccc
Confidence 663
No 59
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=92.42 E-value=1.4 Score=32.74 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=33.0
Q ss_pred CceEEEEEEEeccccCCCCeEEEEEEEeC---CEEEEEEEEee--CCcE--EEec
Q psy11115 76 PALFKSLKVRFAKPVLPGQTLRTDMWQES---NRIHFQTSVAE--TNQV--VISG 123 (203)
Q Consensus 76 ~~~l~s~~vRF~~PV~PGDtL~v~~w~~g---~~v~f~~~v~~--~G~~--VLsg 123 (203)
...+.+..++|.+|+..||+|+++++..+ .++.|.-.... +|+. +..+
T Consensus 43 ~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~~~i~~~~~g~~~~~a~~ 97 (121)
T PF13279_consen 43 GFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFEQEIFRPADGKGELAATG 97 (121)
T ss_dssp EEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEEEEEEECSTTEEEEEEEE
T ss_pred eEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEEEEEEEcCCCceEEEEEE
Confidence 56788999999999999999999888643 56776666543 5655 4444
No 60
>PRK11688 hypothetical protein; Provisional
Probab=91.41 E-value=5.1 Score=31.90 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=33.6
Q ss_pred EEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEe-eCCcEEEeceEEEE
Q psy11115 79 FKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVA-ETNQVVISGAYVDL 128 (203)
Q Consensus 79 l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~-~~G~~VLsgg~a~l 128 (203)
=.+++++|.+|+. |++|.++.+. .|++ +.+++.+. ++|+++..+ ...+
T Consensus 100 Ti~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~~~g~lvA~a-~~t~ 151 (154)
T PRK11688 100 TIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELHNEQGVHIASG-TATY 151 (154)
T ss_pred EEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEECCCCCEEEEE-EEEE
Confidence 3689999999994 9999888765 4554 45677764 556666654 5544
No 61
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=91.02 E-value=3.6 Score=32.35 Aligned_cols=49 Identities=8% Similarity=0.222 Sum_probs=33.2
Q ss_pred CCceEEEEEEEeccccCCCCeEEEEEE-------------EeC-CEEEEEEEEeeCCcEEEec
Q psy11115 75 DPALFKSLKVRFAKPVLPGQTLRTDMW-------------QES-NRIHFQTSVAETNQVVISG 123 (203)
Q Consensus 75 d~~~l~s~~vRF~~PV~PGDtL~v~~w-------------~~g-~~v~f~~~v~~~G~~VLsg 123 (203)
......+.+++|.+|+..+-..++++- +.| .++.+++.+.++|++|...
T Consensus 68 ~~~vt~~~~i~yl~P~~~~~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~~~~lvA~~ 130 (138)
T TIGR02447 68 GDIVIADSHIRYLAPVTGDPVANCEAPDLESWEAFLATLQRGGKARVKLEAQISSDGKLAATF 130 (138)
T ss_pred CcEEEEEeeeEEcCCcCCCeEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEECCEEEEEE
Confidence 345678999999999987545566662 223 2466888877888665543
No 62
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=88.94 E-value=5.9 Score=34.96 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=57.4
Q ss_pred CeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEeeCCcEEEeceEE
Q psy11115 50 ALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVAETNQVVISGAYV 126 (203)
Q Consensus 50 ~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~~~G~~VLsgg~a 126 (203)
.+.+.| -+++|.+..+..+.+. +.-.+.++.+-|.+|..++..|..++.+ +|+. ....+.+.|+|++++.. .+
T Consensus 31 ~r~~fG-Gqv~AQal~AA~~tv~--~~~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q~g~~if~~-~~ 106 (286)
T PRK10526 31 LRQVFG-GQVVGQALYAAKETVP--EERLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYM-TA 106 (286)
T ss_pred CCceec-hHHHHHHHHHHHhcCC--CCCCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEECCEEEEEE-EE
Confidence 456778 7777888777777763 2346899999999999999999888875 4543 44566677888877755 66
Q ss_pred EEeeC
Q psy11115 127 DLKSS 131 (203)
Q Consensus 127 ~l~~~ 131 (203)
.+...
T Consensus 107 sF~~~ 111 (286)
T PRK10526 107 SFQAP 111 (286)
T ss_pred EeccC
Confidence 66633
No 63
>PRK10254 thioesterase; Provisional
Probab=88.63 E-value=10 Score=30.05 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=43.8
Q ss_pred CCeeeehHHHHHHHHHHH--HHH--HHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEe-eCCcEE
Q psy11115 49 PALFKSGYPAILGFSVRH--VLR--QYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVA-ETNQVV 120 (203)
Q Consensus 49 p~~IaHG~m~T~G~~ar~--v~~--~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~-~~G~~V 120 (203)
|.-++||| .+++++=-+ +.. ...++....=.++++.|.+|+..| +|+++... .|++ ..+++.+. ++|+++
T Consensus 49 ~~G~vHGG-v~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~~g~l~ 126 (137)
T PRK10254 49 PFGLLHGG-ASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRPVSEG-KVRGVCQPLHLGRQNQSWEIVVFDEQGRRC 126 (137)
T ss_pred CCCcchHH-HHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEeccCcCC-eEEEEEEEEecCcCEEEEEEEEEcCCCCEE
Confidence 56689994 333333111 111 122344444567888999999988 79887764 4554 56788776 556665
Q ss_pred Eec
Q psy11115 121 ISG 123 (203)
Q Consensus 121 Lsg 123 (203)
-..
T Consensus 127 a~~ 129 (137)
T PRK10254 127 CTC 129 (137)
T ss_pred EEE
Confidence 533
No 64
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=87.39 E-value=1.5 Score=37.84 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=38.3
Q ss_pred hhh-hccCCCCCCChhhhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEE
Q psy11115 20 YLS-GLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRT 98 (203)
Q Consensus 20 ~~a-~ldgD~npih~~~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v 98 (203)
.|| .+-||+||||..-+ ++--+.| =+.++ .++..++ .-+.+..+|+++|--|-.|.+
T Consensus 23 ~FAK~VAgDFNPIHD~Da------------KRFCVPG-DLLFa----lvL~~~G-----lS~~M~f~F~GMVg~~v~L~f 80 (218)
T PF12119_consen 23 RFAKEVAGDFNPIHDPDA------------KRFCVPG-DLLFA----LVLAKYG-----LSQKMRFRFSGMVGDDVPLHF 80 (218)
T ss_pred HHHHHhccCCCccCCCCC------------ccccCcc-HHHHH----HHHHhcC-----ccceeEEEEeeeecCCceeec
Confidence 344 37999999996322 2234888 66666 4456654 456788999999966655554
No 65
>KOG3328|consensus
Probab=82.09 E-value=15 Score=30.02 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=53.5
Q ss_pred eeeehHHHHHHHHHHHHHH----HHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCEEEE---EEEEeeCCcEEE
Q psy11115 51 LFKSGYPAILGFSVRHVLR----QYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNRIHF---QTSVAETNQVVI 121 (203)
Q Consensus 51 ~IaHG~m~T~G~~ar~v~~----~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~v~f---~~~v~~~G~~VL 121 (203)
-.+|| -||+.++= .+.. .-.+..+..-..+++.|-.|..+||.|.++... .|+.+.| +.+.+.+|++..
T Consensus 54 k~LHG-G~tAtLvD-~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklGe~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia 131 (148)
T KOG3328|consen 54 KTLHG-GATATLVD-LITSAALLMTSGFKPGVSVDLSVSYLSSAKLGEELEIEATVVRVGKTLAFTDVELRRKSTGKIIA 131 (148)
T ss_pred ccccc-cchhhHHH-HHhhHHHHhccCCCCceEEEEEhhhccccCCCCeEEEEEEEeecCceEEEEEEEEEEcCCCeEEE
Confidence 35899 67765543 2221 123566778889999999999999999988764 4554433 333457798888
Q ss_pred eceEEEEeeC
Q psy11115 122 SGAYVDLKSS 131 (203)
Q Consensus 122 sgg~a~l~~~ 131 (203)
.|....+-..
T Consensus 132 ~grhtk~~~~ 141 (148)
T KOG3328|consen 132 KGRHTKYFRP 141 (148)
T ss_pred ecceEEEeec
Confidence 8866666544
No 66
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=80.26 E-value=5.9 Score=31.63 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=32.2
Q ss_pred EEEEEEEeccccCCCCeEEEEEEEe-----CCEEEEEEEEeeCCcE
Q psy11115 79 FKSLKVRFAKPVLPGQTLRTDMWQE-----SNRIHFQTSVAETNQV 119 (203)
Q Consensus 79 l~s~~vRF~~PV~PGDtL~v~~w~~-----g~~v~f~~~v~~~G~~ 119 (203)
-+.+.+.|..||-||+++++.+... ++...|.+.+.-.|+.
T Consensus 88 ~~~i~I~f~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~~ 133 (146)
T PF10989_consen 88 GRTITITFDEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPPGDN 133 (146)
T ss_pred CCEEEEEeCCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEECCCCC
Confidence 5678899999999999999999532 3678888887655543
No 67
>PLN02864 enoyl-CoA hydratase
Probab=64.16 E-value=36 Score=30.56 Aligned_cols=49 Identities=8% Similarity=0.175 Sum_probs=34.3
Q ss_pred EEEEEeccccCCCCeEEEEEEEeC----CE---EEEEEEEe--eCCcEEEeceEEEEe
Q psy11115 81 SLKVRFAKPVLPGQTLRTDMWQES----NR---IHFQTSVA--ETNQVVISGAYVDLK 129 (203)
Q Consensus 81 s~~vRF~~PV~PGDtL~v~~w~~g----~~---v~f~~~v~--~~G~~VLsgg~a~l~ 129 (203)
+++.++.+|+.+|++|+++.+.++ ++ +.+++.+. ++|++|...-...+.
T Consensus 98 eq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~ 155 (310)
T PLN02864 98 QQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFL 155 (310)
T ss_pred cceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEE
Confidence 677889999999999999877643 22 45665543 478888866444343
No 68
>PLN02868 acyl-CoA thioesterase family protein
Probab=61.94 E-value=61 Score=29.88 Aligned_cols=77 Identities=9% Similarity=0.075 Sum_probs=53.5
Q ss_pred eeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE--eCCE-EEEEEEEeeCCcEEEeceEEE
Q psy11115 51 LFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ--ESNR-IHFQTSVAETNQVVISGAYVD 127 (203)
Q Consensus 51 ~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~--~g~~-v~f~~~v~~~G~~VLsgg~a~ 127 (203)
+-++| -+.+|.+..+....+. +...+.++.+-|..|-.|+..+..++.+ +|+. ...++...|+|++++.. .+.
T Consensus 158 ~~~fG-G~~~aqal~Aa~~~~~--~~~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~Q~g~~~~~~-~~s 233 (413)
T PLN02868 158 GKVFG-GQLVGQALAAASKTVD--PLKLVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAIQKGKVIFTL-FAS 233 (413)
T ss_pred ccccc-hHHHHHHHHHHHccCC--CCCCceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEEECCeeEEEE-eec
Confidence 44788 7777888877777753 3356899999999777777667777665 5543 44566667888777655 566
Q ss_pred EeeC
Q psy11115 128 LKSS 131 (203)
Q Consensus 128 l~~~ 131 (203)
+...
T Consensus 234 f~~~ 237 (413)
T PLN02868 234 FQKE 237 (413)
T ss_pred cccC
Confidence 5543
No 69
>PLN02647 acyl-CoA thioesterase
Probab=59.77 E-value=43 Score=31.83 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=24.5
Q ss_pred HHHHcCCCCceEEEEEEEeccccCCCCeEEEEEEE
Q psy11115 68 LRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQ 102 (203)
Q Consensus 68 ~~~~~~gd~~~l~s~~vRF~~PV~PGDtL~v~~w~ 102 (203)
...++.+.+--..-=.+.|.+||..||.|.++..+
T Consensus 325 A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V 359 (437)
T PLN02647 325 AYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCV 359 (437)
T ss_pred HHHHcCCceEEEEecceEecCccccCcEEEEEEEE
Confidence 34456555443444468999999999999987543
No 70
>PLN02370 acyl-ACP thioesterase
Probab=56.97 E-value=58 Score=30.81 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=36.3
Q ss_pred CceEEEEEEEeccccCCCCeEEEEEEEeC-CE--E--EEEEEEeeCCcEEEece
Q psy11115 76 PALFKSLKVRFAKPVLPGQTLRTDMWQES-NR--I--HFQTSVAETNQVVISGA 124 (203)
Q Consensus 76 ~~~l~s~~vRF~~PV~PGDtL~v~~w~~g-~~--v--~f~~~v~~~G~~VLsgg 124 (203)
.-.+.++.+.|.+|..-||+|+++.|..+ ++ . .|.+...++|+++..+.
T Consensus 196 ~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~ 249 (419)
T PLN02370 196 IWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLTRAS 249 (419)
T ss_pred eEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEEEEE
Confidence 56799999999999999999999999865 32 2 33333223677777663
No 71
>PF02036 SCP2: SCP-2 sterol transfer family; InterPro: IPR003033 This domain is involved in binding sterols, and is found in proteins such as SCP2. This domain has a 3-layer alpha/beta/alpha fold, composed of alpha/beta(3)/(crossover)/beta/(alpha)/beta. The human sterol carrier protein 2 (SCP2) is a basic protein that is believed to participate in the intracellular transport of cholesterol and various other lipids []. The Unc-24 protein of Caenorhabditis elegans contains a domain similar to part of two ion channel regulators (the erythrocyte integral membrane protein stomatin and the C. elegans neuronal protein MEC-2) juxtaposed to a domain similar to nonspecific lipid transfer protein (nsLTP; also called sterol carrier protein 2) [].; GO: 0032934 sterol binding; PDB: 2KSH_A 2KSI_A 1PZ4_A 1C44_A 2CX7_B 1WFR_A 1QND_A 2C0L_B 1IKT_A 3BKR_A ....
Probab=55.68 E-value=7.9 Score=27.89 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.3
Q ss_pred Cccccceece-EEEEEEeeCCe
Q psy11115 175 DPSLTKKVNG-VFVYVILKNGK 195 (203)
Q Consensus 175 ~~~lvkkvn~-vf~~~Itk~gk 195 (203)
.++..+.+++ +|+|+|+..+.
T Consensus 13 ~~~~l~~l~~~~i~~~i~~~~~ 34 (102)
T PF02036_consen 13 IPEALKGLDGKVIQFEITDPPG 34 (102)
T ss_dssp HHHHHHHHEE-EEEEEEECTTE
T ss_pred cHHHHhhcCCEEEEEEEECCCc
Confidence 6789999999 99999988754
No 72
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=53.09 E-value=81 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=24.4
Q ss_pred eEEEEEEEeccccCCCCeEEEEEEEe----C--CEEEEEEEEe-eCCcEEEeceEEEE
Q psy11115 78 LFKSLKVRFAKPVLPGQTLRTDMWQE----S--NRIHFQTSVA-ETNQVVISGAYVDL 128 (203)
Q Consensus 78 ~l~s~~vRF~~PV~PGDtL~v~~w~~----g--~~v~f~~~v~-~~G~~VLsgg~a~l 128 (203)
..++.+++|.+|-. .+|+.+.... + ....+++.+. .+|+.|... ..++
T Consensus 76 ~~k~~~i~f~kpa~--g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~G~~Va~~-~~t~ 130 (132)
T PF14539_consen 76 WDKSAEIDFLKPAR--GDVTATAELTEEQIGERGELTVPVEITDADGEVVAEA-TITW 130 (132)
T ss_dssp EEEEEEEEE-S-----S-EEEEEE-TCCHCCHEEEEEEEEEEEETTC-EEEEE-EEEE
T ss_pred EEEeeEEEEEeccC--CcEEEEEEcCHHHhCCCcEEEEEEEEEECCCCEEEEE-EEEE
Confidence 47899999999943 3344444332 1 2355666655 457776654 5554
No 73
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=50.87 E-value=27 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=23.6
Q ss_pred CCCceEEEEEEEecc---ccCCCCeEEEEEEEe---CCEEEEEE
Q psy11115 74 NDPALFKSLKVRFAK---PVLPGQTLRTDMWQE---SNRIHFQT 111 (203)
Q Consensus 74 gd~~~l~s~~vRF~~---PV~PGDtL~v~~w~~---g~~v~f~~ 111 (203)
|...++-.+..+... =+.|||.+.+++|-= -++|.|.-
T Consensus 28 nG~~vla~isGKmR~~rIrIl~GD~V~VE~spYDltkGRIiyR~ 71 (87)
T PRK12442 28 NGVEVGAYASGRMRKHRIRILAGDRVTLELSPYDLTKGRINFRH 71 (87)
T ss_pred CCCEEEEEeccceeeeeEEecCCCEEEEEECcccCCceeEEEEe
Confidence 334455555555554 478999999999852 24565553
No 74
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=47.84 E-value=67 Score=25.87 Aligned_cols=106 Identities=18% Similarity=0.185 Sum_probs=49.0
Q ss_pred EEeeccchhhHhhhhccCCCCCCChhhhhhhhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcCCCCceEEEEEEEecc
Q psy11115 9 QVDLTRGNDQVYLSGLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAK 88 (203)
Q Consensus 9 ~~~~~~~~~~~~~a~ldgD~npih~~~a~~~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~gd~~~l~s~~vRF~~ 88 (203)
++..-++..+...|-+.-|-||-+.-|+=+- + + +- -|+..|++--. ++..+.+.--.+.+=+.||.+
T Consensus 21 ~v~~~~~~~l~~~APL~pN~N~~~T~FgGSl-~---s-------la-tLaGW~lv~l~-l~e~~~~~~IVi~~~~i~Y~~ 87 (144)
T PF09500_consen 21 KVTSYTGQRLELSAPLAPNINHHGTMFGGSL-Y---S-------LA-TLAGWGLVWLQ-LKEAGLNGDIVIADSNIRYLK 87 (144)
T ss_dssp EEEEEETTEEEEE--SGGGB-TTSSB-HHHH-H---H-------HH-HHHHHHHHHHH-HHHHT---EEEEEEEEEEE-S
T ss_pred EEEEEcCCEEEEeccCCCCcCCCCCcchHHH-H---H-------HH-HHHHHHHHHHH-HHHhCCCCcEEEEeCceEEcC
Confidence 3344444555566777888888876553111 0 0 11 25555666533 333333333457788999999
Q ss_pred ccCCCCeEEEEEEEe------------CC--EEEEEEEEeeCCcEE--EeceEEE
Q psy11115 89 PVLPGQTLRTDMWQE------------SN--RIHFQTSVAETNQVV--ISGAYVD 127 (203)
Q Consensus 89 PV~PGDtL~v~~w~~------------g~--~v~f~~~v~~~G~~V--Lsgg~a~ 127 (203)
||.-.=+.+++.-.. ++ ||.+++.+.++|+.+ +.|-++.
T Consensus 88 Pv~~d~~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~~~~~~a~f~G~yv~ 142 (144)
T PF09500_consen 88 PVTGDFTARCSLPEPEDWERFLQTLARGGRARITLEVEIYSGGELAAEFTGRYVA 142 (144)
T ss_dssp ---S--EEEEE-------S---GGGGCTS-EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCCcEEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEECCEEEEEEEEEEEE
Confidence 998665556654411 13 566666666776653 3444443
No 75
>PLN02647 acyl-CoA thioesterase
Probab=42.58 E-value=2.6e+02 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=21.9
Q ss_pred EEEeccccCCCCeEEEEEEEe--CC-EEEEEEEE
Q psy11115 83 KVRFAKPVLPGQTLRTDMWQE--SN-RIHFQTSV 113 (203)
Q Consensus 83 ~vRF~~PV~PGDtL~v~~w~~--g~-~v~f~~~v 113 (203)
++.|.+|+.+||.|.+...+. |+ .+.+.+.+
T Consensus 151 ~i~F~~Pi~~g~~v~l~g~Vt~vGrSSMEV~v~V 184 (437)
T PLN02647 151 KIVLKKPIRVDVDLKIVGAVTWVGRSSMEIQLEV 184 (437)
T ss_pred cEEEcCCCcCCcEEEEEEEEEEecCCeEEEEEEE
Confidence 468999999999999887653 53 34444433
No 76
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=39.70 E-value=1.7e+02 Score=22.24 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=36.3
Q ss_pred ceEEEEEEEeccccCCCCeEEEEEEEeC--------CEEEEEEEEeeCCcEEEeceEEEE
Q psy11115 77 ALFKSLKVRFAKPVLPGQTLRTDMWQES--------NRIHFQTSVAETNQVVISGAYVDL 128 (203)
Q Consensus 77 ~~l~s~~vRF~~PV~PGDtL~v~~w~~g--------~~v~f~~~v~~~G~~VLsgg~a~l 128 (203)
-.+.+++.+|..++-..-.+.+++.... ....+++.+.++|+++.++ .+.+
T Consensus 72 ~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~~~~~~~v~~~q~g~~~a~~-~~~~ 130 (132)
T PF03756_consen 72 FVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRPRGLRFRVTVSQGGRVVATA-SMTF 130 (132)
T ss_pred EEEEEEEEEEccccccCCCEEEEEEEEeccccCCccceEEEEEEEEECCEEEEEE-EEEE
Confidence 4689999999999966667766665421 2466777777889888766 4443
No 77
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=39.40 E-value=2.5e+02 Score=24.14 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=30.4
Q ss_pred CceEEEEEEEeccccCCCCeEEEEEEE--e--CCEEEEEEEEe-eCCcEEEeceEEEEe
Q psy11115 76 PALFKSLKVRFAKPVLPGQTLRTDMWQ--E--SNRIHFQTSVA-ETNQVVISGAYVDLK 129 (203)
Q Consensus 76 ~~~l~s~~vRF~~PV~PGDtL~v~~w~--~--g~~v~f~~~v~-~~G~~VLsgg~a~l~ 129 (203)
...++++.+.|.+.+.+||+|.+.... . ++.+.+.-... ++|+.+... ..+++
T Consensus 203 ~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~~~~h~i~~~~g~~~~~~-~~~W~ 260 (261)
T PF01643_consen 203 KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGLSTLHEIRNEDGEEVARA-RTEWQ 260 (261)
T ss_dssp CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEEEEEEEEECT-TCEEEEE-EEEEE
T ss_pred cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCceEEEEEEEcCCCceEEEE-EEEEc
Confidence 345999999999999999999976542 2 23444444443 336665544 55554
No 78
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=34.23 E-value=54 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=25.1
Q ss_pred cCCCCceEEEEEEEecccc--CCCCeEEEEEEEeC
Q psy11115 72 AGNDPALFKSLKVRFAKPV--LPGQTLRTDMWQES 104 (203)
Q Consensus 72 ~~gd~~~l~s~~vRF~~PV--~PGDtL~v~~w~~g 104 (203)
|++...++-++..+|.+-+ .+||.+.+++|-.+
T Consensus 19 ~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~~~~d 53 (77)
T cd05793 19 CFDGKKRLCRIRGKMRKRVWINEGDIVLVAPWDFQ 53 (77)
T ss_pred ECCCCEEEEEEchhhcccEEEcCCCEEEEEecccc
Confidence 4555678888888888764 47999999988643
No 79
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=34.13 E-value=1e+02 Score=21.34 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=19.5
Q ss_pred ccCCCCeEEEEEEEeCCEEEEEEEEe
Q psy11115 89 PVLPGQTLRTDMWQESNRIHFQTSVA 114 (203)
Q Consensus 89 PV~PGDtL~v~~w~~g~~v~f~~~v~ 114 (203)
++.+|+.+.++...+++.+.|++++.
T Consensus 47 ~l~~g~~v~v~~~~~~~~y~F~s~V~ 72 (87)
T PF12945_consen 47 PLREGEEVIVRFISEDGVYAFKSKVI 72 (87)
T ss_dssp CS-TT-EEEEEEEE-SCEEEEEEEEE
T ss_pred eecCCCEEEEEEEECCeEEEEEEEEE
Confidence 67789999999988888888988875
No 80
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]
Probab=33.51 E-value=67 Score=25.22 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=15.0
Q ss_pred cCCCCeEEEEEEE-eCCEEEEE
Q psy11115 90 VLPGQTLRTDMWQ-ESNRIHFQ 110 (203)
Q Consensus 90 V~PGDtL~v~~w~-~g~~v~f~ 110 (203)
..|||||.+.++. +|++-.+|
T Consensus 21 f~~GDtvrv~vki~Eg~keR~Q 42 (115)
T COG0335 21 FRPGDTVRVHVKIVEGSKERVQ 42 (115)
T ss_pred CCCCCEEEEEEEEEeCCeEEEe
Confidence 3599999999986 55554444
No 81
>PF02933 CDC48_2: Cell division protein 48 (CDC48), domain 2; InterPro: IPR004201 This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C terminus. The VAT-N domain found in AAA ATPases (IPR003959 from INTERPRO) is a substrate 185-residue recognition domain [].; GO: 0005524 ATP binding; PDB: 1QDN_B 1QCS_A 1CR5_C 3QQ8_A 3HU2_A 3HU1_E 3HU3_A 3QWZ_A 3TIW_B 3QQ7_A ....
Probab=33.49 E-value=61 Score=21.87 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=21.3
Q ss_pred cccCCCCeEEEEEEEeCCEEEEEEEEeeCCcEE
Q psy11115 88 KPVLPGQTLRTDMWQESNRIHFQTSVAETNQVV 120 (203)
Q Consensus 88 ~PV~PGDtL~v~~w~~g~~v~f~~~v~~~G~~V 120 (203)
.||.+||+|.+.+. ++.+.|.+...+-...|
T Consensus 17 ~pv~~Gd~i~~~~~--~~~~~~~V~~~~P~~~v 47 (64)
T PF02933_consen 17 RPVTKGDTIVFPFF--GQALPFKVVSTEPSGPV 47 (64)
T ss_dssp EEEETT-EEEEEET--TEEEEEEEEEECSSSEE
T ss_pred CCccCCCEEEEEeC--CcEEEEEEEEEEcCCCE
Confidence 68899999988774 66688887765543333
No 82
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=31.43 E-value=2.4e+02 Score=21.52 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=36.3
Q ss_pred CCceEEEEEEEeccccCCCCeEEEE--EEEeCC---EEEEEEEEeeCCcEEEec
Q psy11115 75 DPALFKSLKVRFAKPVLPGQTLRTD--MWQESN---RIHFQTSVAETNQVVISG 123 (203)
Q Consensus 75 d~~~l~s~~vRF~~PV~PGDtL~v~--~w~~g~---~v~f~~~v~~~G~~VLsg 123 (203)
.|.++.++ .|+.|+.-|++|... ..+.++ .+.|+|.+..+...|++-
T Consensus 30 ~Pd~l~~~--~~~~~~~~g~~l~a~gaAFRs~g~WY~l~F~C~vd~d~~~V~sF 81 (101)
T PF06059_consen 30 KPDRLPSY--AFSDPKISGNVLDAPGAAFRSRGKWYDLSFRCEVDPDATKVTSF 81 (101)
T ss_pred CCcccccc--ccCCccccCCEEecCCcEEecCCeEEEEEEEEEECCCceEEEEE
Confidence 45566665 789999999999887 345554 488999988888888876
No 83
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=30.94 E-value=68 Score=24.53 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=29.4
Q ss_pred CCcchHHHHHHHHhhhhcCccccceeceEEEEEEeeCCeee
Q psy11115 157 DDLISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGKKA 197 (203)
Q Consensus 157 ~~l~s~~vF~~i~~~i~~~~~lvkkvn~vf~~~Itk~gk~~ 197 (203)
..+..+.+|+-|.-|| +++.+...+.++.|+++..++..
T Consensus 9 ~~m~~~~~fd~lavrl--d~~kA~~~~~~in~~~~D~~e~~ 47 (125)
T PF14864_consen 9 AAMPPEMLFDYLAVRL--DGEKAADKDFTINFIFTDTGEQY 47 (125)
T ss_dssp HCS-HHHHHHHHHHHB---HHHHTT--EEEEEEETTTTEEE
T ss_pred HhCCHHHHHHHHHhhc--CHHHhCCCcEEEEEEEcCCCCeE
Confidence 4677899999999999 67888888999999998766543
No 84
>PF01828 Peptidase_A4: Peptidase A4 family; InterPro: IPR000250 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases in family G1 form a subset of what were formerly termed 'pepstatin-insensitive carboxyl proteinases'. After its discovery in about 1970, the pentapeptide pepstatin soon came to be thought of as a very general inhibitor of the endopeptidases that are active at acidic pH. But more recently several acid-acting endopeptidases from bacteria and fungi had been found to be resistant to pepstatin. The unusual active sites of the 'pepstatin-insensitive carboxyl peptidases' proved difficult to characterise, but it has now been established that the enzymes from bacteria are acid-acting serine peptidases in family S53 (clan SB), IPR000209 from INTERPRO, whereas the fungal enzymes are in family G1 (formerly A4). The importance of glutamate ('E') and glutamine ('Q') residues in the active sites of the family G1 enzymes led to the family name, Eqolisin []. This group of glutamate/glutamine peptidases belong to MEROPS peptidase family G1 (eqolisin family, clan GA). An example of this group is scytalidoglutamic peptidase. The proteins are thermostable, pepstatin insensitive and are active at low pH ranges []. The enzyme has a unique heterodimeric structure, with a 39-residue light chain and a 173-residue heavy chain bound to each other non-covalently []. The tertiary structure of the active site of scytalidoglutamic peptidase (MEROPS G01.001) with a bound tripeptide product has been interpreted as showing that Glu136 is the primary catalytic residue. The most likely mechanism is suggested to be nucleophilic attack by a water molecule activated by the Glu136 side chain on the si-face of the scissile peptide bond carbon atom to form the tetrahedral intermediate. Electrophilic assistance, and oxyanion stabilisation, are provided by the side-chain amide of Gln53. Both scytalidoglutamic peptidase (MEROPS G01.001) and aspergilloglutamic peptidase (MEROPS G01.002) cleave the Tyr26 Thr27 bond in the B chain of oxidized insulin; a bond not cleaved by other acid-acting endopeptidases. Scytalidoglutamic peptidase is most active on casein at pH 2 and is inhibited by 1,2-epoxy-3-(p-nitrophenoxy)propane (EPNP), a compound that also inhibits pepsin. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1Y43_B 1S2B_A 2IFR_A 1S2K_A 2IFW_A.
Probab=30.72 E-value=81 Score=26.85 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=12.1
Q ss_pred Ee-ccccCCCCeEEEEEEEeC
Q psy11115 85 RF-AKPVLPGQTLRTDMWQES 104 (203)
Q Consensus 85 RF-~~PV~PGDtL~v~~w~~g 104 (203)
.| .=||.|||+|++.+...+
T Consensus 85 ~~~~~~v~~GD~i~~~V~a~s 105 (208)
T PF01828_consen 85 DFSNFPVSPGDTIRVTVTATS 105 (208)
T ss_dssp EETT----TT-EEEEEEEEEE
T ss_pred ccccceECCCCEEEEEEEecC
Confidence 46 468999999999998754
No 85
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=30.68 E-value=2.4e+02 Score=24.27 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCceEEEEEEEeccccCCCCeEEEEEEEeC-CE----EEEEEEEeeCCcEEEeceEEEEe
Q psy11115 74 NDPALFKSLKVRFAKPVLPGQTLRTDMWQES-NR----IHFQTSVAETNQVVISGAYVDLK 129 (203)
Q Consensus 74 gd~~~l~s~~vRF~~PV~PGDtL~v~~w~~g-~~----v~f~~~v~~~G~~VLsgg~a~l~ 129 (203)
|-.-.+.++.+++..+-.-||+|+++-|..+ ++ -.|.....++|+++..+ ...+.
T Consensus 58 ~~~Wvl~r~~i~i~r~P~~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a-~s~Wv 117 (261)
T PF01643_consen 58 GLAWVLSRYQIEIHRYPRWGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARA-TSIWV 117 (261)
T ss_dssp TEEEEEEEEEEEESS--BTT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEE-EEEEE
T ss_pred CcEEEEEEEEEEEEecCCCCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEE-EEEEE
Confidence 3356789999999999999999999999876 22 22443322578887766 44333
No 86
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=30.51 E-value=61 Score=27.72 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=12.9
Q ss_pred cCCCCeEEEEEEEeC
Q psy11115 90 VLPGQTLRTDMWQES 104 (203)
Q Consensus 90 V~PGDtL~v~~w~~g 104 (203)
+-|||+|.+++|...
T Consensus 4 l~pGD~l~I~v~~~~ 18 (239)
T TIGR03028 4 LGPGDVLRITVFQQP 18 (239)
T ss_pred eCCCCEEEEEEecCc
Confidence 569999999999764
No 87
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=29.56 E-value=51 Score=26.48 Aligned_cols=15 Identities=27% Similarity=0.884 Sum_probs=12.9
Q ss_pred cCCCCeEEEEEEEeC
Q psy11115 90 VLPGQTLRTDMWQES 104 (203)
Q Consensus 90 V~PGDtL~v~~w~~g 104 (203)
+-|||.|.+.+|...
T Consensus 3 l~pGD~l~i~v~~~~ 17 (165)
T TIGR03027 3 IGPGDSLNINVWRNP 17 (165)
T ss_pred cCCCCEEEEEEcCCc
Confidence 679999999999754
No 88
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=28.84 E-value=72 Score=22.64 Aligned_cols=28 Identities=11% Similarity=0.375 Sum_probs=18.1
Q ss_pred CCceEEEEEEEecc---ccCCCCeEEEEEEE
Q psy11115 75 DPALFKSLKVRFAK---PVLPGQTLRTDMWQ 102 (203)
Q Consensus 75 d~~~l~s~~vRF~~---PV~PGDtL~v~~w~ 102 (203)
...++-.+..+..+ -+.|||.+.+++|-
T Consensus 27 g~~vla~i~GKmr~~rI~I~~GD~V~Ve~sp 57 (68)
T TIGR00008 27 GHEVLAHISGKIRMHYIRILPGDKVKVELSP 57 (68)
T ss_pred CCEEEEEecCcchhccEEECCCCEEEEEECc
Confidence 34445555554443 36789999999886
No 89
>PRK10183 hypothetical protein; Provisional
Probab=27.30 E-value=75 Score=21.86 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=25.1
Q ss_pred cCCcchHHHHHHHHhhhhcCccccceeceEEEEEEeeCCeee
Q psy11115 156 ADDLISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGKKA 197 (203)
Q Consensus 156 ~~~l~s~~vF~~i~~~i~~~~~lvkkvn~vf~~~Itk~gk~~ 197 (203)
...+.|..+|..-++- .+.-=...|+..||+.||-.
T Consensus 18 ~~~i~S~~Ll~g~~~v------~I~H~G~~Y~LR~Tr~GKLI 53 (56)
T PRK10183 18 IRRISSQTLLGPDGKV------IIDHDGQEYLLRKTQAGKLL 53 (56)
T ss_pred cceECHHHHhCCCCEE------EEEECCcEEEeEEccCCceE
Confidence 3588899999743332 22233469999999999975
No 90
>KOG1708|consensus
Probab=27.28 E-value=86 Score=27.20 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=22.7
Q ss_pred cCCCCeEEEEEEEeCCEEEEEE-EEeeCCcEEEec
Q psy11115 90 VLPGQTLRTDMWQESNRIHFQT-SVAETNQVVISG 123 (203)
Q Consensus 90 V~PGDtL~v~~w~~g~~v~f~~-~v~~~G~~VLsg 123 (203)
+|+||++.+-+=++.++.-..+ ...+++.+|+.|
T Consensus 73 ff~GDtVeVlvGkDkGkqG~Vtqv~r~~s~VvV~g 107 (236)
T KOG1708|consen 73 FFFGDTVEVLVGKDKGKQGEVTQVIRHRSWVVVKG 107 (236)
T ss_pred EecCCEEEEEecccCCccceEEEEeecCceEEEcc
Confidence 5899999988766654422222 335778888876
No 91
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=26.71 E-value=90 Score=23.69 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=25.1
Q ss_pred cCCCCceEEEEEEEeccccC--CCCeEEEEEEEeC
Q psy11115 72 AGNDPALFKSLKVRFAKPVL--PGQTLRTDMWQES 104 (203)
Q Consensus 72 ~~gd~~~l~s~~vRF~~PV~--PGDtL~v~~w~~g 104 (203)
|++...++.++..+|.+-++ +||.+.+++|-.+
T Consensus 40 ~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~~~ 74 (100)
T PRK04012 40 CMDGVERMGRIPGKMKKRMWIREGDVVIVAPWDFQ 74 (100)
T ss_pred eCCCCEEEEEEchhhcccEEecCCCEEEEEecccC
Confidence 45556788888888888654 7999999888654
No 92
>PF07703 A2M_N_2: Alpha-2-macroglobulin family N-terminal region; InterPro: IPR011625 This is a domain of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; PDB: 2QKI_D 3L3O_D 3NMS_A 2ICF_A 2A73_A 2ICE_D 2HR0_A 2A74_A 2XWJ_G 3OHX_A ....
Probab=25.90 E-value=2.4e+02 Score=21.05 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=21.9
Q ss_pred cccCCCCeEEEEEEEeCC--EEEEEEEEeeCCcEEEec
Q psy11115 88 KPVLPGQTLRTDMWQESN--RIHFQTSVAETNQVVISG 123 (203)
Q Consensus 88 ~PV~PGDtL~v~~w~~g~--~v~f~~~v~~~G~~VLsg 123 (203)
....|||++++.+.-... .+.+. +..+|.++..+
T Consensus 8 ~~~~~Ge~~~v~v~~~~~~~~~~~~--v~s~g~I~~~~ 43 (136)
T PF07703_consen 8 DSYKPGETAKVTVQSPFPNGTFLYL--VESRGKIVSTG 43 (136)
T ss_dssp SSB-TTSEEEEEEEEESCESEEEEE--EEETTEEEEEE
T ss_pred CCcCCCCEEEEEEEcCCCccEEEEE--EEECCeEEEEE
Confidence 567899999999986653 34443 33466666655
No 93
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=25.26 E-value=1.7e+02 Score=22.49 Aligned_cols=34 Identities=9% Similarity=0.232 Sum_probs=24.0
Q ss_pred EEEEEEEeccc----cCCCCeEEEEEEEeCCEEEEEEE
Q psy11115 79 FKSLKVRFAKP----VLPGQTLRTDMWQESNRIHFQTS 112 (203)
Q Consensus 79 l~s~~vRF~~P----V~PGDtL~v~~w~~g~~v~f~~~ 112 (203)
.+.+.+|-... ..|||+|...-|.++..+..++.
T Consensus 17 ~KtiEiRlnD~kr~~ikvGD~I~f~~~~~~~~l~v~V~ 54 (109)
T cd06555 17 KKTIEIRLNDEKRQQIKVGDKILFNDLDTGQQLLVKVV 54 (109)
T ss_pred CCEEEEEecccchhcCCCCCEEEEEEcCCCcEEEEEEE
Confidence 45566666655 89999999998877655555443
No 94
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=25.04 E-value=1e+02 Score=22.48 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=25.1
Q ss_pred cCCCCceEEEEEEEeccccC--CCCeEEEEEEEeC
Q psy11115 72 AGNDPALFKSLKVRFAKPVL--PGQTLRTDMWQES 104 (203)
Q Consensus 72 ~~gd~~~l~s~~vRF~~PV~--PGDtL~v~~w~~g 104 (203)
|++...++.++..+|.+-++ +||-+.+++|..+
T Consensus 24 ~~dG~~~la~ipgK~Rk~iwI~~GD~VlVe~~~~~ 58 (83)
T smart00652 24 CADGKERLARIPGKMRKKVWIRRGDIVLVDPWDFQ 58 (83)
T ss_pred ECCCCEEEEEEchhhcccEEEcCCCEEEEEecCCC
Confidence 45556788899999998754 7998888888543
No 95
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=24.83 E-value=1e+02 Score=21.25 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=17.4
Q ss_pred cCCCCeEEEEEEEeCCEEEEEEE
Q psy11115 90 VLPGQTLRTDMWQESNRIHFQTS 112 (203)
Q Consensus 90 V~PGDtL~v~~w~~g~~v~f~~~ 112 (203)
-.||+++++++++.+....++++
T Consensus 59 ~~~g~~v~l~v~R~g~~~~~~v~ 81 (82)
T PF13180_consen 59 GKPGDTVTLTVLRDGEELTVEVT 81 (82)
T ss_dssp SSTTSEEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEEEECCEEEEEEEE
Confidence 36899999999998866665543
No 96
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=23.90 E-value=1.1e+02 Score=28.14 Aligned_cols=16 Identities=31% Similarity=0.655 Sum_probs=14.0
Q ss_pred ccCCCCeEEEEEEEeC
Q psy11115 89 PVLPGQTLRTDMWQES 104 (203)
Q Consensus 89 PV~PGDtL~v~~w~~g 104 (203)
-|.|||+|++++-++|
T Consensus 290 ~vlpGe~l~v~iiK~G 305 (356)
T COG4956 290 VVLPGEELTVQIIKDG 305 (356)
T ss_pred cccCCCeeEEEEeecC
Confidence 3679999999999987
No 97
>KOG2763|consensus
Probab=23.37 E-value=1.3e+02 Score=28.02 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.7
Q ss_pred HHHHcCCCCceEEEEE-EEeccccCCCCeEEEEEEE
Q psy11115 68 LRQYAGNDPALFKSLK-VRFAKPVLPGQTLRTDMWQ 102 (203)
Q Consensus 68 ~~~~~~gd~~~l~s~~-vRF~~PV~PGDtL~v~~w~ 102 (203)
...||.+.| .+++++ +.|.+||-.|+-|+.+..+
T Consensus 234 A~~f~~~~p-~~rsVD~i~F~~pVdvG~~L~f~s~V 268 (357)
T KOG2763|consen 234 AKLFCKGRP-ATRSVDDIEFQKPVDVGCVLTFSSFV 268 (357)
T ss_pred HHHHcCCCc-eEEEechhhccCcceeeeEEEEeeEE
Confidence 456776666 677775 6999999999999887654
No 98
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=23.35 E-value=1.3e+02 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.1
Q ss_pred cCCCCceEEEEEEEeccccC--CCCeEEEEEEEeC
Q psy11115 72 AGNDPALFKSLKVRFAKPVL--PGQTLRTDMWQES 104 (203)
Q Consensus 72 ~~gd~~~l~s~~vRF~~PV~--PGDtL~v~~w~~g 104 (203)
|++...++.++..+|.+-++ +||.+.+++|..+
T Consensus 19 ~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~~~~~~ 53 (78)
T cd04456 19 CADGQRRLVSIPGKLRKNIWIKRGDFLIVDPIEEG 53 (78)
T ss_pred ECCCCEEEEEEchhhccCEEEcCCCEEEEEecccC
Confidence 45556788899999998854 7999999988764
No 99
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=22.08 E-value=2.2e+02 Score=21.48 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.6
Q ss_pred EEEEeccccCCCCeEEEEEEEe
Q psy11115 82 LKVRFAKPVLPGQTLRTDMWQE 103 (203)
Q Consensus 82 ~~vRF~~PV~PGDtL~v~~w~~ 103 (203)
+..++..++.||++|.++....
T Consensus 2 f~~~l~~~l~~G~~i~i~G~~~ 23 (133)
T PF00337_consen 2 FTARLPGGLSPGDSIIIRGTVP 23 (133)
T ss_dssp EEEEETTEEETTEEEEEEEEEB
T ss_pred ceEEcCCCCCCCcEEEEEEEEC
Confidence 4678899999999999998764
No 100
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=22.06 E-value=1.2e+02 Score=26.89 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.0
Q ss_pred EEEEEEeccccCCCCeEEEEEEEeC
Q psy11115 80 KSLKVRFAKPVLPGQTLRTDMWQES 104 (203)
Q Consensus 80 ~s~~vRF~~PV~PGDtL~v~~w~~g 104 (203)
.++...+.+||.||++|++.....+
T Consensus 194 ~r~~l~y~keva~G~~iti~~e~~~ 218 (250)
T COG3884 194 LRLTLEYVKEVAPGEKITIVYEVHP 218 (250)
T ss_pred ceeEEEEEcccCCCCeEEEEEEEcc
Confidence 4577899999999999999887653
No 101
>PRK11798 ClpXP protease specificity-enhancing factor; Provisional
Probab=21.63 E-value=2.8e+02 Score=22.44 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEEEeccccCC
Q psy11115 61 GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLP 92 (203)
Q Consensus 61 G~~ar~v~~~~~~gd~~~l~s~~vRF~~PV~P 92 (203)
-|+.|++.+|+.+++-+-+....+.+-+-..|
T Consensus 9 PYLlRA~yeW~~Dn~~TP~l~Vda~~~~v~VP 40 (138)
T PRK11798 9 PYLLRALYEWIVDNGLTPHLLVDATYPGVQVP 40 (138)
T ss_pred hHHHHHHHHHHhhCCCCcEEEEEcCCCCCcCC
Confidence 47789999999999999999999988877666
No 102
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.25 E-value=91 Score=28.97 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=27.2
Q ss_pred hhhhhhhcCCCCeeeehHHHHHHHHHHHHHHHHcC
Q psy11115 39 HVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAG 73 (203)
Q Consensus 39 ~~fa~~ag~~p~~IaHG~m~T~G~~ar~v~~~~~~ 73 (203)
..+..+-|.+|=++.|| +|.|-+++.+-+.+..
T Consensus 135 ~~~~SFvG~~~iP~rHG--mTiGELA~~~n~e~~~ 167 (365)
T PF07075_consen 135 PEFRSFVGMYPIPIRHG--MTIGELARMFNGEFWL 167 (365)
T ss_pred cccccccCCCccccccC--CCHHHHHHHHHhhcCC
Confidence 34566778889999999 6999999998888765
Done!