RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11115
(203 letters)
>gnl|CDD|239532 cd03448, HDE_HSD, HDE_HSD The R-hydratase-like hot dog fold of the
17-beta-hydroxysteriod dehydrogenase (HSD), and
Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other
enzymes with this fold include MaoC dehydratase, and the
fatty acid synthase beta subunit.
Length = 122
Score = 111 bits (280), Expect = 7e-32
Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 8/90 (8%)
Query: 48 DPALFKS-GYPA-IL------GFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTD 99
DPA K+ G+P IL GF+ R VL +A DPA FK++KVRF+ PV PG+TLRT+
Sbjct: 33 DPAFAKAAGFPRPILHGLCTYGFAARAVLEAFADGDPARFKAIKVRFSSPVFPGETLRTE 92
Query: 100 MWQESNRIHFQTSVAETNQVVISGAYVDLK 129
MW+E NR+ FQT V E + VV+S L
Sbjct: 93 MWKEGNRVIFQTKVVERDVVVLSNGAALLA 122
>gnl|CDD|178455 PLN02864, PLN02864, enoyl-CoA hydratase.
Length = 310
Score = 78.3 bits (193), Expect = 2e-17
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQV 119
LGF+VR V++ + DP K++ RF V PG+TL T+MW E R+ +QT V E N+
Sbjct: 236 LGFAVRAVIKCFCNGDPTAVKTISGRFLLHVYPGETLVTEMWLEGLRVIYQTKVKERNKA 295
Query: 120 VISGAYVDLKS 130
V+SG YVDL+
Sbjct: 296 VLSG-YVDLRH 305
>gnl|CDD|216580 pfam01575, MaoC_dehydratas, MaoC like domain. The maoC gene is
part of a operon with maoA which is involved in the
synthesis of monoamine oxidase. The MaoC protein is
found to share similarity with a wide variety of
enzymes; estradiol 17 beta-dehydrogenase 4, peroxisomal
hydratase-dehydrogenase-epimerase, fatty acid synthase
beta subunit. Several bacterial proteins that are
composed solely of this domain have (R)-specific
enoyl-CoA hydratase activity. This domain is also
present in the NodN nodulation protein N.
Length = 123
Score = 60.4 bits (147), Expect = 3e-12
Identities = 23/65 (35%), Positives = 28/65 (43%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQV 119
L + V Q N A + VRF PV PG TLRT++ R + V ET
Sbjct: 59 LAIARGLVEEQGGDNVVARYGGWSVRFTGPVFPGDTLRTEVEVVGKRDGREIKVVETTVG 118
Query: 120 VISGA 124
V GA
Sbjct: 119 VTVGA 123
>gnl|CDD|239525 cd03441, R_hydratase_like, (R)-hydratase [(R)-specific enoyl-CoA
hydratase]. Catalyzes the hydration of trans-2-enoyl
CoA to (R)-3-hydroxyacyl-CoA as part of the PHA
(polyhydroxyalkanoate) biosynthetic pathway. The
structure of the monomer includes a five-strand
antiparallel beta-sheet wrapped around a central alpha
helix, referred to as a hot dog fold. The active site
lies within a substrate-binding tunnel formed by the
homodimer. Other enzymes with this fold include MaoC
dehydratase, Hydratase-Dehydrogenase-Epimerase protein
(HDE), and the fatty acid synthase beta subunit.
Length = 127
Score = 47.6 bits (114), Expect = 2e-07
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVA----- 114
L + +++ G D A S VRF PV PG TLR ++ R V
Sbjct: 51 LSLASGLLVQWLPGTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTE 110
Query: 115 ETNQ---VVISGA 124
NQ VV+SG
Sbjct: 111 ARNQGGEVVLSGE 123
>gnl|CDD|239531 cd03447, FAS_MaoC, FAS_MaoC, the MaoC-like hot dog fold of the
fatty acid synthase, beta subunit. Other enzymes with
this fold include MaoC dehydratase,
Hydratase-Dehydrogenase-Epimerase protein (HDE), and
17-beta-hydroxysteriod dehydrogenase (HSD).
Length = 126
Score = 38.0 bits (89), Expect = 6e-04
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 63 SVRHVLRQYAG-NDPALFKSLKVRFAKPVLPGQTLRTD-----MWQESNRIHFQTSVAET 116
+VR ++ +A ND + +S F VLP L M I + ET
Sbjct: 53 AVRALVETWAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEET 112
Query: 117 NQVVISG 123
++V+ G
Sbjct: 113 GELVLRG 119
>gnl|CDD|239524 cd03440, hot_dog, The hotdog fold was initially identified in the
E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein
(ACP)-dehydratase) structure and subsequently in 4HBT
(4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A
number of other seemingly unrelated proteins also share
the hotdog fold. These proteins have related, but
distinct, catalytic activities that include metabolic
roles such as thioester hydrolysis in fatty acid
metabolism, and degradation of phenylacetic acid and the
environmental pollutant 4-chlorobenzoate. This
superfamily also includes the PaaI-like protein FapR, a
non-catalytic bacterial homolog involved in
transcriptional regulation of fatty acid biosynthesis.
Length = 100
Score = 30.5 bits (69), Expect = 0.18
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 64 VRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMW---QESNRIHFQTSV-AETNQV 119
R A+ SL VRF +PV PG TL + + + + V E ++
Sbjct: 32 GAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEVEVRNEDGKL 91
Query: 120 VISG 123
V +
Sbjct: 92 VATA 95
>gnl|CDD|224941 COG2030, MaoC, Acyl dehydratase [Lipid metabolism].
Length = 159
Score = 29.7 bits (67), Expect = 0.58
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 83 KVRFAKPVLPGQTLRT 98
+VRF KPV PG TLR
Sbjct: 100 EVRFVKPVFPGDTLRA 115
>gnl|CDD|239533 cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA
hydratase] catalyzes the hydration of trans-2-enoyl CoA
to (R)-3-hydroxyacyl-CoA as part of the PHA
(polyhydroxyalkanoate) biosynthetic pathway.
(R)-hydratase contains a hot-dog fold similar to those
of thioesterase II, and beta-hydroxydecanoyl-ACP
dehydratase, MaoC dehydratase,
Hydratase-Dehydrogenase-Epimerase protein (HDE), and the
fatty acid synthase beta subunit. The active site lies
within a substrate-binding tunnel formed by the
(R)-hydratase homodimer. A subset of the bacterial
(R)-hydratases contain a C-terminal
phosphotransacetylase (PTA) domain.
Length = 128
Score = 29.4 bits (67), Expect = 0.59
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 85 RFAKPVLPGQTLR-----TDMWQESNRIHFQTSVAETNQ---VVISG 123
RF +PV G T+ T+ ++ R+ +T TNQ VVI G
Sbjct: 78 RFLRPVFIGDTVTATVTVTEKREDKKRVTLETVC--TNQNGEVVIEG 122
>gnl|CDD|234568 PRK00006, fabZ, (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed.
Length = 147
Score = 28.9 bits (66), Expect = 0.91
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 83 KVRFAKPVLPGQTLRTDMWQESNR 106
K RF +PV+PG L ++ R
Sbjct: 95 KARFKRPVVPGDQLILEVELLKQR 118
>gnl|CDD|238615 cd01288, FabZ, FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein
(ACP) dehydratase that primarily catalyzes the
dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP,
the third step in the elongation phase of the bacterial/
plastid, type II, fatty-acid biosynthesis pathway.
Length = 131
Score = 28.7 bits (65), Expect = 1.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 83 KVRFAKPVLPGQTLRTDMWQESNR 106
K RF KPV+PG L ++ R
Sbjct: 81 KARFRKPVVPGDQLILEVELLKLR 104
>gnl|CDD|237296 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine
deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein]
dehydratase; Reviewed.
Length = 464
Score = 29.1 bits (66), Expect = 1.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 83 KVRFAKPVLPGQTL 96
KV+F + V+PG TL
Sbjct: 409 KVKFRQKVVPGDTL 422
>gnl|CDD|239537 cd03453, SAV4209_like, SAV4209_like. Similar in sequence to the
Streptomyces avermitilis SAV4209 protein, with a hot
dog fold that is similar to those of (R)-specific
enoyl-CoA hydratase, the peroxisomal
Hydratase-Dehydrogenase-Epimerase (HDE) protein, and
the fatty acid synthase beta subunit.
Length = 127
Score = 28.1 bits (63), Expect = 2.0
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 38 RHVLRQYAG----------NDPALFKSGYPAIL-------GFSVRHVLRQYAGNDPALFK 80
R L +YAG ++ K G P ++ G R ++ + G DP
Sbjct: 14 RADLVRYAGASGDFNPIHYDEDFAKKVGLPGVIAHGMLTMGLLGR-LVTDWVG-DPGRVV 71
Query: 81 SLKVRFAKPVLPGQTL 96
S VRF KPV TL
Sbjct: 72 SFGVRFTKPVPVPDTL 87
>gnl|CDD|238275 cd00493, FabA_FabZ, FabA/Z, beta-hydroxyacyl-acyl carrier protein
(ACP)-dehydratases: One of several distinct enzyme types
of the dissociative, type II, fatty acid synthase system
(found in bacteria and plants) required to complete
successive cycles of fatty acid elongation. The third
step of the elongation cycle, the dehydration of
beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed
by FabA or FabZ. FabA is bifunctional and catalyzes an
additional isomerization reaction of trans-2-acyl-ACP to
cis-3-acyl-ACP, an essential reaction to unsaturated
fatty acid synthesis. FabZ is the primary dehydratase
that participates in the elongation cycles of saturated
as well as unsaturated fatty acid biosynthesis, whereas
FabA is more active in the dehydration of
beta-hydroxydecanoyl-ACP. The FabA structure is
homodimeric with two independent active sites located at
the dimer interface.
Length = 131
Score = 27.6 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 83 KVRFAKPVLPGQTLRTDMWQESNR 106
KV+F PVLPG TL ++ R
Sbjct: 82 KVKFRGPVLPGDTLTLEVELLKVR 105
>gnl|CDD|150163 pfam09400, DUF2002, Protein of unknown function (DUF2002). This is
a family of putative cytoplasmic proteins. The structure
of these proteins form an antiparallel beta and sheet
and contain some alpha helical regions.
Length = 110
Score = 27.1 bits (60), Expect = 3.0
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 7 HYQVDLTRGNDQVYLSGLDHHQIGIHLGFSVRHVLRQYAG 46
HYQ +YL G H GI GFS R L +Y
Sbjct: 74 HYQ------EFPLYLGGETHEHYGIPHGFSSREALERYLN 107
>gnl|CDD|239539 cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein
with a hot dog fold that is similar to those of
(R)-specific enoyl-CoA hydratase, the peroxisomal
Hydratase-Dehydrogenase-Epimerase (HDE) protein, and
the fatty acid synthase beta subunit. The alpha- and
gamma-proteobacterial members of this CD have, in
addition to a hot dog fold, an N-terminal extension.
Length = 123
Score = 27.3 bits (61), Expect = 3.2
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 64 VRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRT 98
V + +AG D A KS R P+ G TLR
Sbjct: 55 VIRYVTDWAGPD-ARVKSFAFRLGAPLYAGDTLRF 88
>gnl|CDD|237473 PRK13692, PRK13692, (3R)-hydroxyacyl-ACP dehydratase subunit HadA;
Provisional.
Length = 159
Score = 27.5 bits (61), Expect = 3.7
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 30/123 (24%)
Query: 25 DHHQIGIHLGFSVRHVLRQYA----GNDPALFKSGYPAILGF----------SVRHVLRQ 70
DH+++ R +R+YA +D A F+ A LG+ V Q
Sbjct: 16 DHYEVE-------REKIREYAVAVQNDDAAYFEEDAAAELGYKGLLAPLTFICVFGYKAQ 68
Query: 71 YA---GNDPALFKSLKV------RFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVI 121
A + A+ + V +F KP++ G L D++ +S R T + T +V
Sbjct: 69 SAFFKHANIAVADAQIVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVT 128
Query: 122 SGA 124
+
Sbjct: 129 NEE 131
>gnl|CDD|182545 PRK10556, PRK10556, hypothetical protein; Provisional.
Length = 111
Score = 26.9 bits (60), Expect = 4.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 20 YLSGLDHHQIGIHLGFSVRHVLRQY 44
YL+G H GI GFS R L +Y
Sbjct: 81 YLAGERHEHYGIPHGFSSREALERY 105
>gnl|CDD|236180 PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate
acetyltransferase; Validated.
Length = 466
Score = 27.9 bits (63), Expect = 4.0
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 25/104 (24%)
Query: 84 VRFAKPVLPGQTLR-----TDMWQESNRIHFQTSVAETNQ---VVISGAYVDLKSSVQMR 135
+RF +PV G TL + E + TNQ VVI+G
Sbjct: 90 LRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRC--TNQDGEVVITGT----------- 136
Query: 136 KTGATSRPPGATLHTHRVNAAD-DLISQAVFDGMLERVQADPSL 178
A P + RV + L ++ +L + P L
Sbjct: 137 ---AEVIAPTEKVRRPRVVLPEVRLHRHDRYERLLAAARGLPPL 177
>gnl|CDD|132332 TIGR03289, frhB, coenzyme F420 hydrogenase, subunit beta. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. The N- and
C-terminal domains of this protein are modelled by
pfam04422 and pfam04423 respectively.
Length = 275
Score = 27.5 bits (61), Expect = 4.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 137 TGATSRPPGATLHTHRVNAADDLISQAVFDGMLE 170
TG+ P G + R + + +I++AV G+LE
Sbjct: 206 TGSVGSPDGWSTVIIRTDKGESIINKAVEAGILE 239
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 27.6 bits (61), Expect = 5.3
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 13/96 (13%)
Query: 20 YLSGLDHHQIGIHL-GFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPAL 78
+LS +DH + GIHL G++ ++ ++Y LF+ +I ++R +
Sbjct: 778 HLSTMDHLRHGIHLRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIR------------V 825
Query: 79 FKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVA 114
++VR P LR + + ++R+ FQ + A
Sbjct: 826 LSHVQVRREDPAEEEARLRREAEELASRMQFQHAEA 861
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 27.7 bits (62), Expect = 5.3
Identities = 14/63 (22%), Positives = 21/63 (33%)
Query: 72 AGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAYVDLKSS 131
+P+L ++ + L D W+ S T V E + V VDL S
Sbjct: 75 QWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQS 134
Query: 132 VQM 134
Sbjct: 135 CFF 137
>gnl|CDD|198270 cd10407, SH2_Vav3, Src homology 2 (SH2) domain found in the Vav3
proteins. Proto-oncogene vav is a member of the Dbl
family of guanine nucleotide exchange factors (GEF) for
the Rho family of GTP binding proteins. All vavs are
activated by tyrosine phosphorylation leading to their
activation. There are three Vav mammalian family
members: Vav1 which is expressed in the hematopoietic
system, and Vav2 and Vav3 are more ubiquitously
expressed. Vav3 preferentially activates RhoA, RhoG and,
to a lesser extent, Rac1. Alternatively spliced
transcript variants encoding different isoforms have
been described for this gene. VAV3 has been shown to
interact with Grb2. Vav proteins are involved in several
processes that require cytoskeletal reorganization, such
as the formation of the immunological synapse (IS),
phagocytosis, platelet aggregation, spreading, and
transformation. Vavs function as guanine nucleotide
exchange factors (GEFs) for the Rho/Rac family of
GTPases. Vav family members have several conserved
motifs/domains including: a leucine-rich region, a
leucine-zipper, a calponin homology (CH) domain, an
acidic domain, a Dbl-homology (DH) domain, a pleckstrin
homology (PH) domain, a cysteine-rich domain, 2 SH3
domains, a proline-rich region, and a SH2 domain. Vavs
are the only known Rho GEFs that have both the DH/PH
motifs and SH2/SH3 domains in the same protein. The
leucine-rich helix-loop-helix (HLH) domain is thought to
be involved in protein heterodimerization with other HLH
proteins and it may function as a negative regulator by
forming inactive heterodimers. The CH domain is usually
involved in the association with filamentous actin, but
in Vav it controls NFAT stimulation, Ca2+ mobilization,
and its transforming activity. Acidic domains are
involved in protein-protein interactions and contain
regulatory tyrosines. The DH domain is a GDP-GTP
exchange factor on Rho/Rac GTPases. The PH domain in
involved in interactions with GTP-binding proteins,
lipids and/or phosphorylated serine/threonine residues.
The SH3 domain is involved in localization of proteins
to specific sites within the cell interacting with
protein with proline-rich sequences. The SH2 domain
mediates a high affinity interaction with tyrosine
phosphorylated proteins. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 103
Score = 26.5 bits (58), Expect = 5.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 158 DLISQAVFDGMLERVQADPSLTKKVNGVFV 187
D Q + G +ER+QA+ L +VN ++
Sbjct: 1 DYSCQPWYAGAMERLQAETELINRVNSTYL 30
>gnl|CDD|220308 pfam09603, Fib_succ_major, Fibrobacter succinogenes major domain
(Fib_succ_major). This domain of about 175 to 200 amino
acids is found, in from one to five copies, in over 50
proteins in Fibrobacter succinogenes S85, an obligate
anaerobe of the rumen. Many members of this family have
an apparent lipoprotein signal sequence. Conserved
cysteine residues, suggestive of disulfide bond
formation, are also consistent with an extracytoplasmic
location for this domain. This domain can also be found
in small numbers of proteins in Chlorobium tepidum and
Bacteroides thetaiotaomicron.
Length = 181
Score = 26.6 bits (59), Expect = 7.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 42 RQYAGNDPALFKSGYPAILGFSVR 65
R +D A+ +S GFSVR
Sbjct: 155 RFLGYSDTAVRRSSANKGTGFSVR 178
>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
Length = 2710
Score = 27.4 bits (60), Expect = 7.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 157 DDLISQAVFDGMLERVQADPSLTKKVNGVFV 187
D + A GM ER+ ADP L K++N V V
Sbjct: 681 DTPVCAAAAGGMAERLAADPGLRKELNPVDV 711
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 27.0 bits (60), Expect = 8.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 68 LRQYAGNDPALFK-SLKVRFAKPVLPGQTLRTDM-WQE 103
R+ G DP L + S + RFA L + + D W++
Sbjct: 7 FREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQ 44
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole with
a conserved GGxR motif; it is found in almost all the
members of this family. The catalytic dyad is formed by
a serine and an aspartate. Patatin belongs to the
alpha-beta hydrolase family which is identified by a
characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family
includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
(iPLA2-beta) like phospholipases from human as well as
the Pat17 isozyme from Solanum cardiophyllum.
Length = 344
Score = 26.7 bits (59), Expect = 9.8
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 30 GIHLGFSVRHVLRQYAGNDPALF-KSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAK 88
I LG SV +L Y N +F K+ L + QY + L K L F +
Sbjct: 57 CIALGMSVTDLLSFYTLNGVNMFDKAWLAQRLFL--NKLYNQY--DPTNLGKKLNTVFPE 112
Query: 89 PVLPGQTLRT 98
L TLRT
Sbjct: 113 TTLGDDTLRT 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,232,445
Number of extensions: 936100
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 31
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)