RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11115
(203 letters)
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 122 bits (309), Expect = 7e-33
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQV 119
LGFSVR VL Q+A N+PALFK++KVRF+ PV+PGQTLR D+W++ RI+F+T V ET +
Sbjct: 530 LGFSVRAVLAQFADNNPALFKAVKVRFSGPVIPGQTLRVDLWKQGTRINFRTVVVETGKE 589
Query: 120 VISGAYVDLKSS 131
VISGAYVDLKSS
Sbjct: 590 VISGAYVDLKSS 601
>1s9c_A Peroxisomal multifunctional enzyme type 2; hot-DOG fold, hydratase
2 motif, lyase; 3.00A {Homo sapiens} SCOP: d.38.1.4
d.38.1.4 PDB: 2cdh_S
Length = 298
Score = 91.8 bits (227), Expect = 1e-22
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQV 119
GFS R VL+Q+A ND + FK++K RFAKPV PGQTL+T+MW+E NRIHFQT V ET +
Sbjct: 220 FGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDI 279
Query: 120 VISGAYVDLKSS 131
VIS AYVDL +
Sbjct: 280 VISNAYVDLAPT 291
>3kh8_A MAOC-like dehydratase; hot DOG domain, lyase; 2.00A {Phytophthora
capsici}
Length = 332
Score = 88.0 bits (217), Expect = 5e-21
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESN-RIHFQTSVAETNQ 118
+G + R + +Q+ G D A FKS++VRF+ P PG+T++T MWQE + ++ FQ V E
Sbjct: 255 MGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETIQTRMWQEGSGKVLFQAVVKERGA 314
Query: 119 VVISGAYVDLKSSVQMR 135
V++ G R
Sbjct: 315 VIVDGGEFVYTQDASAR 331
>3khp_A MAOC family protein; dehydrogenase, oxidoreductase, structural
genomics; HET: TLA; 2.30A {Mycobacterium tuberculosis
H37RV}
Length = 311
Score = 79.5 bits (195), Expect = 5e-18
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 21 LSGLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFK 80
LSG D + + F+ + P G G + R ++ + G A
Sbjct: 204 LSG-DRNPLHSDPWFATQ------LAGFPKPILHGL-CTYGVAGRALVAELGGGVAANIT 255
Query: 81 SLKVRFAKPVLPGQTLRTDMWQ-ESNRIHFQTSVAETNQ----VVISGAYVDLKS 130
S+ RF KPV PG+TL T +W+ E R F+T VA ++ VV+ V+ +
Sbjct: 256 SIAARFTKPVFPGETLSTVIWRTEPGRAVFRTEVAGSDGAEARVVLDDGAVEYVA 310
>1pn2_A Peroxisomal hydratase-dehydrogenase-epimerase; hot-DOG fold,
hydratase 2 motif, lyase; 1.95A {Candida tropicalis}
SCOP: d.38.1.4 d.38.1.4 PDB: 1pn4_A*
Length = 280
Score = 74.0 bits (181), Expect = 3e-16
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 39 HVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRT 98
H+ +A K P + G + + + +F +K RF V PG+TLR
Sbjct: 187 HIDPNFA----KGAKFPKPILHGMCTYGLSAKALIDKFGMFNEIKARFTGIVFPGETLRV 242
Query: 99 DMWQE-SNRIHFQTSVAETNQVVISGAYVDLKSS 131
W+E + I FQT V + + I+ A + L
Sbjct: 243 LAWKESDDTIVFQTHVVDRGTIAINNAAIKLVGD 276
>3bkr_A Sterol carrier protein-2 like-3; mosquito, fatty acid, palmitic
acid, cholesterol, lipid binding protein; HET: PLM;
1.40A {Aedes aegypti} PDB: 3bks_A*
Length = 126
Score = 46.6 bits (110), Expect = 3e-07
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 159 LISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGKKADTW 200
L + + D + E++ + + + + GK +
Sbjct: 9 LKTDQILDKLNEKLAQVDRSKRSFTVILFVHLRQEGKVVRSV 50
>1pz4_A Sterol carrier protein 2; alpha and beta, lipid binding protein;
HET: PLM; 1.35A {Aedes aegypti} SCOP: d.106.1.1 PDB:
2ksh_A 2ksi_A*
Length = 116
Score = 44.5 bits (105), Expect = 2e-06
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 158 DLISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGKKADTWSK 202
L S VF + +R+++ ++V V+ + I + GK W
Sbjct: 8 SLKSDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNWVM 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-06
Identities = 43/219 (19%), Positives = 71/219 (32%), Gaps = 53/219 (24%)
Query: 3 TQHRHYQV-----DLTRGNDQVYLSGLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYP 57
Q HY V T G + YL G H G+ V V + + F S
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFVSVRK 298
Query: 58 AI-----LGFSVRHVLRQYAGNDPALFKSLKVRFAKP-----V--LPGQTLRTDMWQESN 105
AI +G + L SL+ P + L + ++ + ++N
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTN 357
Query: 106 RI---HFQTSVAETN---QVVISGAYVDLKS-SVQMRKTGATS-----------RPP--- 144
Q ++ N +V+SG L ++ +RK A S R
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 145 ------GATLHTHRVNAADDLISQAVFDGMLERVQADPS 177
+ H+H + A DLI++ D + V +
Sbjct: 418 NRFLPVASPFHSHLLVPASDLINK---DLVKNNVSFNAK 453
Score = 36.2 bits (83), Expect = 0.006
Identities = 30/222 (13%), Positives = 68/222 (30%), Gaps = 62/222 (27%)
Query: 17 DQVYLSGLDHHQIGIHLGFS-------VRHVLRQYAGNDPALFKSGYPAILGFSVRHVLR 69
+ YL G D H + L + +++ Y + R + +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-----------------ITARIMAK 134
Query: 70 Q--YAGNDPALFKSLKVRFAK--PVLPGQTLRTDMWQESNRIH--FQTSVAETNQVVISG 123
+ ++ ALF+++ A+ + GQ D ++E ++ + V + +I
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD----LIKF 190
Query: 124 AYVDLKSSVQMRKTGATSRPPGATLH---THRVNAADD--LISQAV------------FD 166
+ L ++ G + + N D L+S + +
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 167 GMLERVQADP--------SLTKKVNGVFVYVILKNGKKADTW 200
+ + P T G+ V + + D+W
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI---AETDSW 289
Score = 36.2 bits (83), Expect = 0.007
Identities = 26/129 (20%), Positives = 47/129 (36%), Gaps = 31/129 (24%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQV 119
GFS+ ++ N+P +L + F G+ +R + + + F+T V +
Sbjct: 1657 YGFSILDIVI----NNP---VNLTIHFGGE--KGKRIRENY----SAMIFETIVDGKLKT 1703
Query: 120 VISGAYVDLKSSVQMRKTGATSRPPGATLH-THRVNA--ADDLISQAVFDGMLER--VQA 174
++ S T T R L T A L+ +A F+ + + + A
Sbjct: 1704 EKIFKEINEHS------TSYTFRSEKGLLSATQ--FTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 175 DP-----SL 178
D SL
Sbjct: 1756 DATFAGHSL 1764
Score = 31.2 bits (70), Expect = 0.22
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 24/115 (20%)
Query: 25 DHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPAL-FKSLK 83
D+H GFS+ ++ N+P + G +R N A+ F+++
Sbjct: 1650 DNH-FKDTYGFSILDIVI----NNPVNLTIHFGGEKGKRIRE-------NYSAMIFETIV 1697
Query: 84 --VRFAKPVLPGQTLRTD--MWQESNRIHFQTSVAETNQ---VVISGA-YVDLKS 130
+ + + ++ + T Q ++ A + DLKS
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT---QPALTLMEKAAFEDLKS 1749
Score = 30.8 bits (69), Expect = 0.30
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIH-FQTSVAETNQ 118
LG+ V G + F L G N IH + + N
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-----------NDIHALAAKLLQEND 113
Query: 119 VVISGAYVDLKSSVQMRKTG--ATSRPPGATLHTHRVNAADD----LISQAVFDG 167
+ +K+ + R + + L A + L+ A+F G
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEGNAQLV--AIFGG 162
Score = 28.9 bits (64), Expect = 1.4
Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 65/173 (37%)
Query: 19 VYLSGLDHHQIGIHLGFSVRHVLRQYAGNDPA--LFKSGY--PAILGFSV--RHVLRQYA 72
++ + +D + + Y L + + PA+ L+
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS-K 1750
Query: 73 GNDP--------------AL--------FKS----LKVR-----FAKP------------ 89
G P AL +S + R A P
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 90 -VLPGQTLRTDMWQES-----NRIHFQT----SVA----ETNQVVISGAYVDL 128
+ PG+ + QE+ R+ +T + E Q V +G L
Sbjct: 1811 AINPGR-VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
>1ikt_A Estradiol 17 beta-dehydrogenase 4; ALFA-beta fold, protein-triton
X-100 complex, hydrophobic tunnel; HET: OXN; 1.75A {Homo
sapiens} SCOP: d.106.1.1
Length = 120
Score = 42.7 bits (100), Expect = 8e-06
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 155 AADDLISQAVFDGMLERVQ-ADPSLTKKVNGVFVYVILKNGKKADTW 200
L S VF+ + R++ P + KKVN VF + I K G W
Sbjct: 2 EGGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIGAKW 48
>1c44_A Protein (sterol carrier protein 2); non specific lipid transfer
protein, fatty acid binding, fatty acyl COA binding,
lipid binding protein; 1.80A {Oryctolagus cuniculus}
SCOP: d.106.1.1 PDB: 1qnd_A 2c0l_B
Length = 123
Score = 39.2 bits (91), Expect = 1e-04
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 155 AADDLISQAVFDGMLERVQADPS-LTKKVNGVFVYVILKN-GKKADTW 200
A D + VF + ++++ + KK+ G+F + + G K TW
Sbjct: 3 AGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATW 50
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO
structural genomics consortium, SGC, lyase; 1.99A {Homo
sapiens}
Length = 148
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 77 ALFKSLKVRFAKPVLPGQTLR-----TDMWQESNRIHFQTSVAETNQVVISG 123
+F S ++ F P+ G+ + + + I SV E+ + V+ G
Sbjct: 85 CVFLSQEISFPAPLYIGEVVLASAEVKKLKRFIAIIAVSCSVIESKKTVMEG 136
>2qzt_A Sterol carrier protein 2-like 2; mosquito, fatty acid, palmitic
acid, cholesterol, lipid transport; HET: PLM; 1.70A
{Aedes aegypti} PDB: 3bdq_A*
Length = 111
Score = 36.8 bits (85), Expect = 0.001
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 161 SQAVFDGMLERVQA-DPSLTKKVNGVFVYVILKNGKKADTW 200
+ + + + RV A DP+ +KV GVF I K + W
Sbjct: 9 VETIIERIKARVGAVDPNGPRKVLGVFQLNI-KTASGVEQW 48
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase;
polyhydroxyalkanoate, aeromonas caviae, the hydratase 2
motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Length = 134
Score = 34.9 bits (81), Expect = 0.005
Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 10/55 (18%)
Query: 77 ALFKSLKVRFAKPVLPGQTLR-----TDMWQESNRIHFQTSVAETNQ---VVISG 123
+++ + F PV G + T + ++ T + Q + ++G
Sbjct: 75 SIYLGQSLSFKLPVFVGDEVTAEVEVTALREDKPIATLTTRI--FTQGGALAVTG 127
>2b3n_A Hypothetical protein AF1124; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.25A {Archaeoglobus fulgidus} SCOP:
d.38.1.4 PDB: 2b3m_A 3k67_A
Length = 159
Score = 34.7 bits (80), Expect = 0.008
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 76 PALFKSLKVRFAKPVLPGQTLRTDMW---QESNRIHFQTSVAETNQVVISG 123
+ R+ PV G +R + E NR ++VV G
Sbjct: 102 TVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKCYTGDKVVAEG 152
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp.
atroseptica (pectobacterium atrosepticum), structural
genomics; 2.50A {Pectobacterium atrosepticum}
Length = 129
Score = 32.8 bits (75), Expect = 0.028
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 70 QYAG---NDPALFKSL-KVRFAKPVLPGQTLRTDM-WQES-NRIHFQTSVA--ETNQVVI 121
YA F S+ ++F +P+LPG+TLR + W + F S+ +T +
Sbjct: 54 HYATTVLAQGWTFLSIENIKFQQPILPGKTLRLVLIWHAGKQSLTFSYSILEGDTERTAS 113
Query: 122 SG 123
SG
Sbjct: 114 SG 115
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 32.7 bits (74), Expect = 0.083
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 63 SVRHVLRQYAG-NDPALFKSLKVRFAKPVLPGQTL-----RTDMWQESNRIHFQTSVAET 116
+VR ++ +A N+ +S V VLP + M I +T
Sbjct: 1597 AVRSLVETWAAENNIGRVRSYHVNMVGMVLPNDAITVKLEHVGMIAGRKIIKVDARNKDT 1656
Query: 117 NQVVISGAYVDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQAVFDGMLERVQADP 176
++ V+ G + TG S+ G + + + ++ V+D +AD
Sbjct: 1657 DESVLQGEAEVEQPVTAYVFTGQGSQEQGMGMDLYATSPV----AKEVWD------RADK 1706
Query: 177 SLTKKVNGVFVYVILKNGKKADT 199
+ G + I+KN K T
Sbjct: 1707 HFRENY-GFSIIDIVKNNPKELT 1728
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.13
Identities = 37/214 (17%), Positives = 62/214 (28%), Gaps = 35/214 (16%)
Query: 4 QHRHYQVDLTRGNDQV-YLSGLDHHQIGIHLGFSVRHVLRQYAGND---PALFKSGYPAI 59
H H+ +D G Q Y L + F + V D L K I
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDHI 54
Query: 60 LGFSVRHVLRQYAGNDPALFKSLKVRFAKPV--LPGQTLRTDM-WQESNRIHFQTSVAET 116
+ V LF +L + + V + LR + + S I +
Sbjct: 55 IMSKDA-VSGTL-----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSM 107
Query: 117 NQVVISGAYVDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQA--VFDGM------ 168
+ L + Q+ SR + A +L + DG+
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 169 ---LERVQADPSLTKKVNGVFVYVILKNGKKADT 199
L+ + K +F ++ LKN +T
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPET 197
Score = 27.9 bits (61), Expect = 3.0
Identities = 30/198 (15%), Positives = 51/198 (25%), Gaps = 61/198 (30%)
Query: 9 QVDLTRGNDQVYLSGLDHHQIGIHLGFSVRHVLRQYAGNDPALFKSGYPA---ILGFSVR 65
L D + S DH S++ LR+ L Y +L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCLLVL----L 251
Query: 66 HVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQVVISGAY 125
+V + + + + + L T R V + +S A
Sbjct: 252 NV------QNAKAWNAFNLS-------CKILLT------TR---FKQVTD----FLSAAT 285
Query: 126 VDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQAVFDGMLERVQADPSLTKKVNGV 185
S T P L+ + + R Q P N
Sbjct: 286 TTHISLDHHSM-TLT---PDEVK---------SLLLKYL--DC--RPQDLPREVLTTNPR 328
Query: 186 FVYVI---LKNGKKADTW 200
+ +I +++G TW
Sbjct: 329 RLSIIAESIRDGL--ATW 344
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty
acid biosynthesis, hot DOG fold, lyase; 2.50A
{Pseudomonas aeruginosa} SCOP: d.38.1.6
Length = 168
Score = 29.1 bits (66), Expect = 0.67
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 83 KVRFAKPVLPGQTLRTDMWQESNR 106
K+RF +PVLPG L+ S +
Sbjct: 114 KLRFRQPVLPGDQLQLHAKFISVK 137
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase;
lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A*
2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A*
3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Length = 171
Score = 29.1 bits (66), Expect = 0.71
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 58 AILGF-SVRHVLRQYAGNDPALFKSL-KVRFAKPVLPGQTLRTDMWQESNR 106
L F S+ + A F ++ KV+F PV PG L + ++
Sbjct: 91 GFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHK 141
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; FABZ, hot DOG
fold, dehydratase, lipid biosynthesis, lipid synthesis,
lyase; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Length = 146
Score = 28.6 bits (65), Expect = 0.79
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 83 KVRFAKPVLPGQTLRTDMWQESNR 106
+F PV PG L +M NR
Sbjct: 94 GAKFRNPVRPGDRLDYEMSVVKNR 117
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 29.6 bits (66), Expect = 0.89
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 63 SVRHVLRQY-AGNDPALFKSLKVRFAKPVLPGQTL-----RTDMWQESNRIHFQTSVAET 116
SVR ++ + A + + + +F VLP L M I F+T +
Sbjct: 1588 SVRALIENWAADSVSSRVRGYTCQFVDMVLPNTALKTSIQHVGMINGRKLIKFETRNEDD 1647
Query: 117 NQVVISGAYVD 127
V+ A ++
Sbjct: 1648 VVVLTGEAEIE 1658
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP
dehydra fatty acid biosynthesis, SAD phasing, lyase;
2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB:
3az8_A* 3az9_A* 3aza_A* 3azb_A* 1zhg_A 2oki_A 2okh_A
Length = 154
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 83 KVRFAKPVLPGQTLR 97
VR+ KPVLPG TL
Sbjct: 100 GVRWKKPVLPGDTLT 114
>3fnc_A Protein LIN0611, putative acetyltransferase; GNAT, RIMI, structural
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.75A {Listeria innocua}
Length = 163
Score = 27.3 bits (61), Expect = 2.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 157 DDLISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGK 195
DLI V D L+R +L +++ V+ + K
Sbjct: 32 QDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADK 70
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur
genomics, PSI-2, protein structure initiative; 2.30A
{Rhodospirillum rubrum}
Length = 154
Score = 27.2 bits (61), Expect = 2.6
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 59 ILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRT 98
+ V L G + ++ + P PG L
Sbjct: 64 TMRLLVTSGLPLAQGI---IGAGTELSWPNPTRPGDELHV 100
>1q6w_A Monoamine oxidase regulatory protein, putative; structural
genomics, nysgxrc T805, hot DOG fold; 2.81A
{Archaeoglobus fulgidus} SCOP: d.38.1.4
Length = 161
Score = 26.9 bits (60), Expect = 3.6
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 83 KVRFAKPVLPGQTLRT 98
VRF +PV G T+
Sbjct: 100 DVRFLRPVFIGDTIAA 115
>4e3e_A MAOC domain protein dehydratase; structural genomics, protein
structure initiative, nysgrc, PSI-biology; 1.90A
{Chloroflexus aurantiacus}
Length = 352
Score = 26.4 bits (58), Expect = 6.7
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 83 KVRFAKPVLPGQTLRT 98
RF V PG TL T
Sbjct: 92 GGRFGAVVYPGDTLST 107
>4ffu_A Oxidase; structural genomics, protein structure initiative, NEW
YORK structural genomix research consortium, nysgrc, PS
biology; HET: MSE; 1.80A {Sinorhizobium meliloti}
Length = 176
Score = 25.8 bits (57), Expect = 8.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 83 KVRFAKPVLPGQTLRT 98
++RF +PV G T+RT
Sbjct: 110 RLRFVRPVHIGDTIRT 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,142,397
Number of extensions: 179736
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 39
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)