RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11115
(203 letters)
>d1s9ca1 d.38.1.4 (A:164-289) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 64.8 bits (157), Expect = 2e-14
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 59 ILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQESNRIHFQTSVAETNQ 118
GFS R VL+Q+A ND + FK++K RFAKPV PGQTL+T+MW+E NRIHFQT V ET
Sbjct: 56 TFGFSARRVLQQFADNDVSRFKAVKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGD 115
Query: 119 VVISGAYVDL 128
+VIS AYVDL
Sbjct: 116 IVISNAYVDL 125
>d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of
multifunctional peroxisomal
hydratase-dehydrogenase-epimerase {Yeast (Candida
tropicalis) [TaxId: 5482]}
Length = 124
Score = 52.8 bits (126), Expect = 6e-10
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 53 KSGYPAILGFSVRH--VLRQYAGNDPALFKSLKVRFAKPVLPGQTLRTDMWQES-NRIHF 109
+ +P + + + + + +F +K RF V PG+TLR W+ES + I F
Sbjct: 44 GAKFPKPILHGMCTYGLSAKALIDKFGMFNEIKARFTGIVFPGETLRVLAWKESDDTIVF 103
Query: 110 QTSVAETNQVVISGAYVDL 128
QT V + + I+ A + L
Sbjct: 104 QTHVVDRGTIAINNAAIKL 122
>d1ikta_ d.106.1.1 (A:) SCP2-like domain of MFE-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 115
Score = 40.7 bits (95), Expect = 1e-05
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 159 LISQAVFDGMLERVQ-ADPSLTKKVNGVFVYVILKNGKKADTW 200
L S VF+ + R++ P + KKVN VF + I K G W
Sbjct: 1 LQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIGAKW 43
>d1c44a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 123
Score = 38.3 bits (89), Expect = 1e-04
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 155 AADDLISQAVFDGMLERVQADP-SLTKKVNGVFVYVIL-KNGKKADTW 200
A D + VF + ++++ + KK+ G+F + + G K TW
Sbjct: 3 AGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATW 50
>d1pz4a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Yellow
fever mosquito (Aedes aegypti) [TaxId: 7159]}
Length = 113
Score = 38.0 bits (88), Expect = 1e-04
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 159 LISQAVFDGMLERVQADPSLTKKVNGVFVYVILKNGKKADTW 200
L S VF + +R+++ ++V V+ + I + GK W
Sbjct: 6 LKSDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNW 47
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas
caviae [TaxId: 648]}
Length = 132
Score = 33.2 bits (75), Expect = 0.008
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 39 HVLRQYAGNDPALFKSGYPAILGFSVRHVLRQYAGNDPALFKSLKVRFAKPVLPGQTLR- 97
H+ +A + +L +L Q +++ + F PV G +
Sbjct: 35 HLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGSIYLGQSLSFKLPVFVGDEVTA 94
Query: 98 ----TDMWQESNRIHFQTSVA-ETNQVVISG 123
T + ++ T + + + ++G
Sbjct: 95 EVEVTALREDKPIATLTTRIFTQGGALAVTG 125
>d2b3na1 d.38.1.4 (A:6-159) Hypothetical protein AF1124 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 154
Score = 33.1 bits (75), Expect = 0.009
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 76 PALFKSLKVRFAKPVLPGQTLRTDMW---QESNRIHFQTSVAETNQVVISG 123
+ R+ PV G +R + E NR ++VV G
Sbjct: 97 TVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKCYTGDKVVAEG 147
>d2g7ja1 d.198.5.1 (A:1-112) Putative cytoplasmic protein YgaC
{Salmonella typhimurium [TaxId: 90371]}
Length = 112
Score = 26.4 bits (58), Expect = 1.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 19 VYLSGLDHHQIGIHLGFSVRHVLRQY 44
+YL G H GI GFS R L +Y
Sbjct: 80 LYLGGETHEHYGIPHGFSSRIALERY 105
>d1gyza_ a.144.2.1 (A:) Ribosomal protein L20 {Aquifex aeolicus
[TaxId: 63363]}
Length = 60
Score = 24.5 bits (54), Expect = 2.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 65 RHVLRQYAGNDPALFKSLKVRFAKPVLPGQ 94
R +L A DP F+ + V K L Q
Sbjct: 32 RKILADMAVRDPQAFEQV-VNKVKEALQVQ 60
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia
coli [TaxId: 562]}
Length = 308
Score = 25.9 bits (56), Expect = 3.9
Identities = 13/69 (18%), Positives = 17/69 (24%)
Query: 103 ESNRIHFQTSVAETNQVVISGAYVDLKSSVQMRKTGATSRPPGATLHTHRVNAADDLISQ 162
E H A V GA+ + G P H H + +I
Sbjct: 65 EVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWL 124
Query: 163 AVFDGMLER 171
D L
Sbjct: 125 DGLDLPLVN 133
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
{Pseudaminobacter salicylatoxidans [TaxId: 93369]}
Length = 351
Score = 24.7 bits (53), Expect = 8.4
Identities = 12/82 (14%), Positives = 19/82 (23%), Gaps = 13/82 (15%)
Query: 90 VLPGQTLRTDMWQESNRIHFQTSVAETNQVVISG--AYVDLKSSVQMRKTGATSRPPGAT 147
+ P +T N F V+ G + + G PG
Sbjct: 94 LGPRETAPE-HRHSQNAFRF----------VVEGEGVWTVVNGDPVRMSRGDLLLTPGWC 142
Query: 148 LHTHRVNAADDLISQAVFDGML 169
H H + + D
Sbjct: 143 FHGHMNDTDQPMAWIDGLDIPF 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 735,065
Number of extensions: 31702
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 14
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)