BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11118
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6VQA1|DIMM_DROME Protein dimmed OS=Drosophila melanogaster GN=dimm PE=1 SV=1
Length = 390
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/78 (79%), Positives = 70/78 (89%)
Query: 24 RRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAK 83
RRRK LNA+E+NMRRLESNERERMRMHSLNDAFQSLREVIPHV+ ERRLSKIETLTLAK
Sbjct: 143 RRRKGALNAKERNMRRLESNERERMRMHSLNDAFQSLREVIPHVEMERRLSKIETLTLAK 202
Query: 84 NYIMALTNVICDMRGEDS 101
NYI+ LT++I R E++
Sbjct: 203 NYIINLTHIILSKRNEEA 220
>sp|Q7RTS1|BHA15_HUMAN Class A basic helix-loop-helix protein 15 OS=Homo sapiens
GN=BHLHA15 PE=1 SV=1
Length = 189
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 5/79 (6%)
Query: 23 GRRRKPVLNA----REKNM-RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIE 77
GRRR+P + R+ ++ RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIE
Sbjct: 56 GRRRRPGPSGPGGRRDSSIQRRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIE 115
Query: 78 TLTLAKNYIMALTNVICDM 96
TLTLAKNYI +LT I M
Sbjct: 116 TLTLAKNYIKSLTATILTM 134
>sp|P70562|BHA15_RAT Class A basic helix-loop-helix protein 15 OS=Rattus norvegicus
GN=Bhlha15 PE=1 SV=1
Length = 197
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 5/74 (6%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT I M
Sbjct: 73 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMS 132
Query: 98 -----GEDSPYVAP 106
G ++P AP
Sbjct: 133 SSRLPGLEAPGPAP 146
>sp|Q9QYC3|BHA15_MOUSE Class A basic helix-loop-helix protein 15 OS=Mus musculus
GN=Bhlha15 PE=2 SV=1
Length = 197
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 5/74 (6%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
RRLESNERER RMH LN+AFQ+LREVIPHV+ +++LSKIETLTLAKNYI +LT I M
Sbjct: 73 RRLESNERERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATILTMS 132
Query: 98 -----GEDSPYVAP 106
G ++P AP
Sbjct: 133 SSRLPGLEAPGPAP 146
>sp|O42202|NDF1_DANRE Neurogenic differentiation factor 1 OS=Danio rerio GN=neurod1 PE=1
SV=1
Length = 350
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 46/57 (80%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
MRR+++N RER RMH LNDA +SLR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 96 MRRMKANARERNRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 152
>sp|Q6NYU3|NDF6A_DANRE Neurogenic differentiation factor 6-A OS=Danio rerio GN=neurod6a
PE=2 SV=1
Length = 327
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 23 GRRRKPVLNAR--EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLT 80
G R+K + AR +RR+E+N RER RMH LN+A SLR+V+P K ++LSKIETL
Sbjct: 72 GPRKKKMTKARVDRVKVRRMEANARERNRMHGLNNALDSLRKVVPCYSKTQKLSKIETLR 131
Query: 81 LAKNYIMALTNVI 93
LAKNYI AL+ ++
Sbjct: 132 LAKNYIWALSEIL 144
>sp|Q9W6C7|NDF6B_DANRE Neurogenic differentiation factor 6-B OS=Danio rerio GN=neurod6b
PE=1 SV=3
Length = 317
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
MRR E+N RER RMH LNDA +SLR+V+P K ++LSKIETL LAKNYI AL+ +
Sbjct: 78 MRRQEANARERSRMHGLNDALESLRKVVPCYSKTQKLSKIETLRLAKNYIWALSETL 134
>sp|Q91616|NDF1_XENLA Neurogenic differentiation factor 1 OS=Xenopus laevis GN=neurod1
PE=1 SV=1
Length = 352
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR+++N RER RMH LNDA SLR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 102 VRRMKANARERNRMHGLNDALDSLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 158
>sp|P48986|NDF6_MOUSE Neurogenic differentiation factor 6 OS=Mus musculus GN=Neurod6 PE=2
SV=1
Length = 337
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR E+N RER RMH LNDA +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 94 FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q08DI0|NDF6_BOVIN Neurogenic differentiation factor 6 OS=Bos taurus GN=NEUROD6 PE=2
SV=1
Length = 337
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR E+N RER RMH LNDA +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 94 FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q4R5G6|NDF6_MACFA Neurogenic differentiation factor 6 OS=Macaca fascicularis
GN=NEUROD6 PE=2 SV=1
Length = 337
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR E+N RER RMH LNDA +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 94 FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q96NK8|NDF6_HUMAN Neurogenic differentiation factor 6 OS=Homo sapiens GN=NEUROD6 PE=2
SV=1
Length = 337
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR E+N RER RMH LNDA +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 94 FRRQEANARERNRMHGLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 150
>sp|Q8NDY6|BHE23_HUMAN Class E basic helix-loop-helix protein 23 OS=Homo sapiens
GN=BHLHE23 PE=2 SV=1
Length = 225
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 16 GRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRL 73
G G ++ GRRR RE+ RL N RER RMH LNDA LR VIP H R+L
Sbjct: 84 GPGSAADGRRRP-----REQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKL 138
Query: 74 SKIETLTLAKNYIMALTNVICDMR 97
SKI TL LAKNYI+ + +MR
Sbjct: 139 SKIATLLLAKNYILMQAQALDEMR 162
>sp|O16867|TAP_DROME Basic helix-loop-helix neural transcription factor TAP
OS=Drosophila melanogaster GN=tap PE=2 SV=2
Length = 398
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%)
Query: 24 RRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAK 83
R R P + K RR+++N+RER RMH+LNDA + LR +P + +E +L+KIE L A
Sbjct: 141 RSRSPTQVVKIKRFRRMKANDRERNRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAH 200
Query: 84 NYIMALTNVI 93
NYI AL V+
Sbjct: 201 NYIFALEQVL 210
>sp|P79765|NDF1_CHICK Neurogenic differentiation factor 1 OS=Gallus gallus GN=NEUROD1
PE=2 SV=1
Length = 357
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR+++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 104 LRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 160
>sp|Q60430|NDF1_MESAU Neurogenic differentiation factor 1 OS=Mesocricetus auratus
GN=NEUROD1 PE=1 SV=2
Length = 355
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR+++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 100 LRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 156
>sp|P79766|NDF4_CHICK Neurogenic differentiation factor 4 OS=Gallus gallus GN=NEUROD4
PE=2 SV=1
Length = 330
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR+++N RER RMH LNDA +LR V+P K ++LSKIETL LA+NYI AL+ V+
Sbjct: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVL 143
>sp|Q64289|NDF1_RAT Neurogenic differentiation factor 1 OS=Rattus norvegicus GN=Neurod1
PE=1 SV=1
Length = 357
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR+++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 101 LRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 157
>sp|Q60867|NDF1_MOUSE Neurogenic differentiation factor 1 OS=Mus musculus GN=Neurod1 PE=1
SV=2
Length = 357
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR+++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 101 LRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 157
>sp|Q13562|NDF1_HUMAN Neurogenic differentiation factor 1 OS=Homo sapiens GN=NEUROD1 PE=1
SV=3
Length = 356
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR+++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 101 LRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 157
>sp|Q9HD90|NDF4_HUMAN Neurogenic differentiation factor 4 OS=Homo sapiens GN=NEUROD4 PE=2
SV=2
Length = 331
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR+++N RER RMH LNDA +LR V+P K ++LSKIETL LA+NYI AL+ V+
Sbjct: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVL 143
>sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 OS=Mus musculus GN=Neurod4 PE=1
SV=1
Length = 330
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RR+++N RER RMH LNDA +LR V+P K ++LSKIETL LA+NYI AL+ V+
Sbjct: 88 RRVKANARERTRMHGLNDALDNLRRVMPCYSKTQKLSKIETLRLARNYIWALSEVL 143
>sp|Q5IS79|ATOH1_PANTR Protein atonal homolog 1 OS=Pan troglodytes GN=ATOH1 PE=2 SV=1
Length = 356
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 1 VSDDTCSISGGGAGGGRGGSSSGRRRKPV---LNAREKNMRRLESNERERMRMHSLNDAF 57
V + C + GG G S R+R P +N +K RRL +N RER RMH LN AF
Sbjct: 126 VREQLCKLKGGVVVDELGCS---RQRAPSSKQVNGVQKQ-RRLAANARERRRMHGLNHAF 181
Query: 58 QSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDS 108
LR VIP +++LSK ETL +A+ YI AL+ ++ G + P P S
Sbjct: 182 DQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSGGEQPPPPPAS 232
>sp|Q92858|ATOH1_HUMAN Protein atonal homolog 1 OS=Homo sapiens GN=ATOH1 PE=2 SV=1
Length = 354
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 1 VSDDTCSISGGGAGGGRGGSSSGRRRKPV---LNAREKNMRRLESNERERMRMHSLNDAF 57
V + C + GG G S R+R P +N +K RRL +N RER RMH LN AF
Sbjct: 124 VREQLCKLKGGVVVDELGCS---RQRAPSSKQVNGVQKQ-RRLAANARERRRMHGLNHAF 179
Query: 58 QSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDS 108
LR VIP +++LSK ETL +A+ YI AL+ ++ G + P P S
Sbjct: 180 DQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQTPSGGEQPPPPPAS 230
>sp|P70447|NGN2_MOUSE Neurogenin-2 OS=Mus musculus GN=Neurog2 PE=1 SV=1
Length = 263
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%)
Query: 33 REKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
R K RRL++N RER RMH+LN A +LREV+P ++ +L+KIETL A NYI ALT
Sbjct: 108 RIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTET 167
Query: 93 I 93
+
Sbjct: 168 L 168
>sp|Q9H2A3|NGN2_HUMAN Neurogenin-2 OS=Homo sapiens GN=NEUROG2 PE=1 SV=2
Length = 272
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 43/61 (70%)
Query: 33 REKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
R K RRL++N RER RMH+LN A +LREV+P ++ +L+KIETL A NYI ALT
Sbjct: 108 RIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIETLRFAHNYIWALTET 167
Query: 93 I 93
+
Sbjct: 168 L 168
>sp|O42606|NGN1_DANRE Neurogenin-1 OS=Danio rerio GN=neurog1 PE=2 SV=1
Length = 208
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
K RRL++N+RER RMH+LNDA +LR V+P + +L+KIETL A NYI AL+ I
Sbjct: 68 KKNRRLKANDRERNRMHNLNDALDALRSVLPAFPDDTKLTKIETLRFAHNYIWALSETI 126
>sp|Q8BGW3|BHE23_MOUSE Class E basic helix-loop-helix protein 23 OS=Mus musculus
GN=Bhlhe23 PE=2 SV=1
Length = 223
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 25 RRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLA 82
RR+P RE+ RL N RER RMH LNDA LR VIP H R+LSKI TL LA
Sbjct: 90 RRRP----REQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLA 145
Query: 83 KNYIMALTNVICDMR 97
KNYI+ + +MR
Sbjct: 146 KNYILMQAQALEEMR 160
>sp|Q62414|NDF2_MOUSE Neurogenic differentiation factor 2 OS=Mus musculus GN=Neurod2 PE=1
SV=3
Length = 383
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR ++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 122 LRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 178
>sp|Q63689|NDF2_RAT Neurogenic differentiation factor 2 OS=Rattus norvegicus GN=Neurod2
PE=1 SV=2
Length = 382
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR ++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 121 LRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 177
>sp|Q15784|NDF2_HUMAN Neurogenic differentiation factor 2 OS=Homo sapiens GN=NEUROD2 PE=2
SV=2
Length = 382
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR ++N RER RMH LN A +LR+V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 121 LRRQKANARERNRMHDLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 177
>sp|Q4ZHW1|PTF1A_XENLA Pancreas transcription factor 1 subunit alpha OS=Xenopus laevis
GN=ptf1a PE=2 SV=1
Length = 270
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 13 AGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERR 72
+ G +GGS +RR+ + + E R +N RER RM S+NDAF+ LR IP + E+R
Sbjct: 95 SPGMKGGSLVMKRRRRLRSDAEMQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKR 154
Query: 73 LSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTG 111
LSK++TL LA YI N + +M D P P+S +G
Sbjct: 155 LSKVDTLRLAIGYI----NFLSEMVQSDLPLRNPNSDSG 189
>sp|Q71T09|BHE22_CHICK Class E basic helix-loop-helix protein 22 OS=Gallus gallus
GN=BHLHE22 PE=2 SV=1
Length = 311
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 18 GGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSK 75
GG S+G ++E+ RL N RER RMH LNDA LR VIP H R+LSK
Sbjct: 152 GGCSNGHGHGGSKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSK 211
Query: 76 IETLTLAKNYIMALTNVICDMR 97
I TL LAKNYI+ + +MR
Sbjct: 212 IATLLLAKNYILMQAQALEEMR 233
>sp|P48987|ATO_DROME Protein atonal OS=Drosophila melanogaster GN=ato PE=2 SV=2
Length = 312
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 12 GAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKER 71
A GG G G++ PV+ K RRL +N RER RM +LN AF LR+ +P + +R
Sbjct: 234 AAAGGSGKKRRGKQITPVV----KRKRRLAANARERRRMQNLNQAFDRLRQYLPCLGNDR 289
Query: 72 RLSKIETLTLAKNYIMALTNVI 93
+LSK ETL +A+ YI AL +++
Sbjct: 290 QLSKHETLQMAQTYISALGDLL 311
>sp|Q6PFG8|OLIG3_MOUSE Oligodendrocyte transcription factor 3 OS=Mus musculus GN=Olig3
PE=2 SV=1
Length = 273
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 13 AGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKE 70
AG G SS + K L+ ++ RL+ N RER RMH LN A LREV+P H
Sbjct: 60 AGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSV 119
Query: 71 RRLSKIETLTLAKNYIMALTNVICDMR 97
R+LSKI TL LA+NYI+ LT+ + +M+
Sbjct: 120 RKLSKIATLLLARNYILMLTSSLEEMK 146
>sp|Q7RTU3|OLIG3_HUMAN Oligodendrocyte transcription factor 3 OS=Homo sapiens GN=OLIG3
PE=1 SV=2
Length = 272
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
Query: 13 AGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKE 70
AG G SS + K L+ ++ RL+ N RER RMH LN A LREV+P H
Sbjct: 59 AGAKAAGESSKYKIKKQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSV 118
Query: 71 RRLSKIETLTLAKNYIMALTNVICDMR 97
R+LSKI TL LA+NYI+ LT+ + +M+
Sbjct: 119 RKLSKIATLLLARNYILMLTSSLEEMK 145
>sp|P48985|ATOH1_MOUSE Protein atonal homolog 1 OS=Mus musculus GN=Atoh1 PE=2 SV=1
Length = 351
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 7/96 (7%)
Query: 1 VSDDTCSISGGGAGGGRGGSSSGRRRKPV---LNAREKNMRRLESNERERMRMHSLNDAF 57
V + C + GG G S R+R P +N +K RRL +N RER RMH LN AF
Sbjct: 121 VREQLCKLKGGVVVDELGCS---RQRAPSSKQVNGVQKQ-RRLAANARERRRMHGLNHAF 176
Query: 58 QSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
LR VIP +++LSK ETL +A+ YI AL+ ++
Sbjct: 177 DQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELL 212
>sp|Q9W6C8|NDF2_DANRE Neurogenic differentiation factor 2 OS=Danio rerio GN=neurod2 PE=2
SV=1
Length = 363
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
+RR ++N RER RMH LN A +L +V+P K ++LSKIETL LAKNYI AL+ ++
Sbjct: 107 VRRQKANARERTRMHDLNSALDNLLKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 163
>sp|Q8NFJ8|BHE22_HUMAN Class E basic helix-loop-helix protein 22 OS=Homo sapiens
GN=BHLHE22 PE=2 SV=1
Length = 381
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLAKNYIMA 88
++E+ RL N RER RMH LNDA LR VIP H R+LSKI TL LAKNYI+
Sbjct: 236 KSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILM 295
Query: 89 LTNVICDMR 97
+ +MR
Sbjct: 296 QAQALEEMR 304
>sp|O09029|BHE22_MESAU Class E basic helix-loop-helix protein 22 OS=Mesocricetus auratus
GN=BHLHE22 PE=2 SV=2
Length = 365
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLAKNYIMALTN 91
E+ RL N RER RMH LNDA LR VIP H R+LSKI TL LAKNYI+
Sbjct: 223 EQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQ 282
Query: 92 VICDMR 97
+ +MR
Sbjct: 283 ALEEMR 288
>sp|P79920|NDF4_XENLA Neurogenic differentiation factor 4 OS=Xenopus laevis GN=neurod4
PE=1 SV=1
Length = 315
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 42/53 (79%)
Query: 41 ESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
++N RER RMH LNDA ++LR V+P K ++LSKIETL LA+NYI AL++++
Sbjct: 82 KANARERSRMHGLNDALENLRRVMPCYSKTQKLSKIETLRLARNYIWALSDIL 134
>sp|Q13516|OLIG2_HUMAN Oligodendrocyte transcription factor 2 OS=Homo sapiens GN=OLIG2
PE=1 SV=2
Length = 323
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLAKNYIMALTN 91
E RL+ N RER RMH LN A LREV+P H R+LSKI TL LA+NYI+ LTN
Sbjct: 105 ELQQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTN 164
Query: 92 VICDMR 97
+ +M+
Sbjct: 165 SLEEMK 170
>sp|Q8C6A8|BHE22_MOUSE Class E basic helix-loop-helix protein 22 OS=Mus musculus
GN=Bhlhe22 PE=1 SV=1
Length = 355
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLAKNYIMALTN 91
E+ RL N RER RMH LNDA LR VIP H R+LSKI TL LAKNYI+
Sbjct: 213 EQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQ 272
Query: 92 VICDMR 97
+ +MR
Sbjct: 273 ALEEMR 278
>sp|Q9EQW6|OLIG2_MOUSE Oligodendrocyte transcription factor 2 OS=Mus musculus GN=Olig2
PE=1 SV=1
Length = 323
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 24 RRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTL 81
++ K + E RL+ N RER RMH LN A LREV+P H R+LSKI TL L
Sbjct: 95 KKDKKQMTEPELQQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLL 154
Query: 82 AKNYIMALTNVICDMR 97
A+NYI+ LTN + +M+
Sbjct: 155 ARNYILMLTNSLEEMK 170
>sp|Q90XB3|OLIG2_CHICK Oligodendrocyte transcription factor 2 OS=Gallus gallus GN=OLIG2
PE=2 SV=1
Length = 298
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLAKNYIMALTN 91
E RL+ N RER RMH LN A LREV+P H R+LSKI TL LA+NYI+ LTN
Sbjct: 103 ELQQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTN 162
Query: 92 VICDMR 97
+ +M+
Sbjct: 163 SLEEMK 168
>sp|Q9Y4Z2|NGN3_HUMAN Neurogenin-3 OS=Homo sapiens GN=NEUROG3 PE=1 SV=2
Length = 214
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 17 RGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKI 76
RGG S R + + ++++ RR ++N+RER RMH+LN A +LR V+P + +L+KI
Sbjct: 65 RGGRS--RPKSELALSKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKI 122
Query: 77 ETLTLAKNYIMALTNVI 93
ETL A NYI ALT +
Sbjct: 123 ETLRFAHNYIWALTQTL 139
>sp|Q0V9X5|BHE22_XENTR Class E basic helix-loop-helix protein 22 OS=Xenopus tropicalis
GN=bhlhe22 PE=2 SV=1
Length = 296
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 32 AREKNMRRLESNERERMRMHSLNDAFQSLREVIP--HVKKERRLSKIETLTLAKNYIMAL 89
++E+ RL N RER RMH LNDA LR VIP H R+LSKI TL LAKNYI+
Sbjct: 148 SKEQRTLRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQ 207
Query: 90 TNVICDMR 97
+ +MR
Sbjct: 208 AQALEEMR 215
>sp|Q10574|LIN32_CAEEL Protein lin-32 OS=Caenorhabditis elegans GN=lin-32 PE=1 SV=2
Length = 142
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 14 GGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRL 73
GGG+ RR K + + MRR +NERER RM++LN A+ LREV+P + ++L
Sbjct: 50 GGGKDDKKKCRRYK-TPSPQLLRMRRSAANERERRRMNTLNVAYDELREVLPEIDSGKKL 108
Query: 74 SKIETLTLAKNYIMALTNVI 93
SK ETL +A+ YI L+ ++
Sbjct: 109 SKFETLQMAQKYIECLSQIL 128
>sp|O13126|ATO7B_XENLA Protein atonal homolog 7-B OS=Xenopus laevis GN=atoh7-b PE=1 SV=1
Length = 138
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93
RRL +N RER RM LN AF SLR+V+P ++++LSK ETL +A +YIMAL+ ++
Sbjct: 34 RRLAANARERRRMQGLNTAFDSLRKVVPQWGEDKKLSKYETLQMALSYIMALSRIL 89
>sp|P70661|NGN3_MOUSE Neurogenin-3 OS=Mus musculus GN=Neurog3 PE=2 SV=1
Length = 214
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 32 AREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91
++++ RR ++N+RER RMH+LN A +LR V+P + +L+KIETL A NYI ALT
Sbjct: 78 SKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTFPDDAKLTKIETLRFAHNYIWALTQ 137
Query: 92 VICDMRGEDSPYVAPDSSTGLITSGTQG 119
+R D + P+ G+ G
Sbjct: 138 T---LRIADHSFYGPEPPVPCGELGSPG 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,921,309
Number of Sequences: 539616
Number of extensions: 1991232
Number of successful extensions: 18552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 17329
Number of HSP's gapped (non-prelim): 1093
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)