Query psy11118
Match_columns 137
No_of_seqs 106 out of 781
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:28:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.8 2.2E-18 4.7E-23 137.7 7.4 64 35-98 106-170 (228)
2 KOG3960|consensus 99.7 1E-17 2.2E-22 136.4 10.9 63 38-101 118-180 (284)
3 KOG3898|consensus 99.7 2.3E-17 5E-22 134.6 4.7 65 34-98 68-132 (254)
4 PF00010 HLH: Helix-loop-helix 99.6 9.5E-16 2.1E-20 97.4 7.2 53 38-90 1-55 (55)
5 cd00083 HLH Helix-loop-helix d 99.6 1.9E-14 4.1E-19 91.7 7.9 56 38-93 4-59 (60)
6 smart00353 HLH helix loop heli 99.5 1.4E-13 3E-18 86.2 7.3 52 43-94 1-52 (53)
7 KOG4447|consensus 99.5 4.5E-14 9.7E-19 108.0 4.7 65 31-96 71-135 (173)
8 KOG4395|consensus 99.4 1.7E-13 3.7E-18 111.9 6.3 64 34-97 170-233 (285)
9 KOG0561|consensus 99.4 6.6E-13 1.4E-17 111.0 8.2 83 9-92 31-113 (373)
10 KOG3910|consensus 99.0 2.5E-10 5.5E-15 100.6 5.4 63 33-95 521-584 (632)
11 KOG1318|consensus 98.9 1.2E-08 2.6E-13 88.5 9.3 65 31-95 226-291 (411)
12 KOG1319|consensus 98.8 1E-08 2.3E-13 81.2 7.4 61 34-94 58-122 (229)
13 KOG2483|consensus 98.2 4.1E-06 8.8E-11 68.1 6.8 57 38-94 59-115 (232)
14 KOG3561|consensus 97.9 3.1E-05 6.8E-10 72.2 6.8 55 38-92 20-75 (803)
15 KOG4304|consensus 97.8 3.6E-05 7.9E-10 63.1 4.9 59 34-92 28-91 (250)
16 KOG2588|consensus 97.5 4.8E-05 1E-09 71.6 2.5 59 37-97 275-333 (953)
17 KOG4447|consensus 97.0 0.00037 7.9E-09 53.9 1.7 55 38-93 21-76 (173)
18 PLN03217 transcription factor 96.6 0.0063 1.4E-07 42.9 5.2 49 50-98 19-70 (93)
19 KOG3558|consensus 92.7 0.2 4.3E-06 46.7 5.1 50 43-94 51-102 (768)
20 KOG3560|consensus 90.9 0.15 3.3E-06 46.6 2.2 52 50-101 37-92 (712)
21 PLN02705 beta-amylase 89.0 2.7 5.7E-05 39.1 8.5 28 39-66 85-112 (681)
22 PLN02905 beta-amylase 68.2 51 0.0011 31.1 9.4 28 39-66 87-114 (702)
23 KOG3559|consensus 67.5 6.5 0.00014 35.3 3.5 46 47-92 10-56 (598)
24 PF05687 DUF822: Plant protein 57.0 16 0.00035 28.1 3.6 28 39-66 12-39 (150)
25 PLN02705 beta-amylase 55.8 14 0.0003 34.6 3.5 11 51-61 118-128 (681)
26 PRK13702 replication protein; 51.6 41 0.0009 23.6 4.6 62 20-84 14-76 (85)
27 PF13815 Dzip-like_N: Iguana/D 45.5 29 0.00062 24.9 3.2 20 76-95 61-80 (118)
28 KOG3582|consensus 43.2 5.4 0.00012 37.7 -1.0 78 37-114 650-729 (856)
29 PF15290 Syntaphilin: Golgi-lo 42.2 1.2E+02 0.0027 25.8 6.9 65 34-98 67-138 (305)
30 PF04839 PSRP-3_Ycf65: Plastid 37.4 22 0.00049 22.5 1.4 38 54-91 10-47 (49)
31 PF15459 RRP14: 60S ribosome b 31.6 50 0.0011 21.7 2.4 18 49-66 3-20 (64)
32 PRK02724 hypothetical protein; 30.4 66 0.0014 23.4 3.0 38 54-91 44-81 (104)
33 PF10392 COG5: Golgi transport 29.9 39 0.00085 24.6 1.9 18 48-65 79-96 (132)
34 COG3075 GlpB Anaerobic glycero 28.8 93 0.002 27.5 4.2 41 50-91 57-97 (421)
35 KOG0999|consensus 27.6 1.3E+02 0.0028 28.3 5.1 47 55-101 672-735 (772)
36 cd06257 DnaJ DnaJ domain or J- 27.4 51 0.0011 19.4 1.8 17 46-62 39-55 (55)
37 CHL00163 ycf65 putative riboso 26.6 84 0.0018 22.6 3.0 38 54-91 39-76 (99)
38 smart00271 DnaJ DnaJ molecular 26.1 54 0.0012 19.7 1.8 15 48-62 43-57 (60)
39 KOG3429|consensus 26.1 47 0.001 26.1 1.8 20 45-64 104-123 (172)
40 KOG1164|consensus 25.1 1.4E+02 0.003 24.3 4.5 31 58-92 108-138 (322)
41 PF12179 IKKbetaNEMObind: I-ka 24.5 94 0.002 18.6 2.5 25 77-101 3-27 (38)
42 KOG1748|consensus 24.5 34 0.00074 25.8 0.7 23 69-91 106-128 (131)
43 KOG1189|consensus 24.0 71 0.0015 31.0 2.8 27 41-67 710-736 (960)
44 PF11279 DUF3080: Protein of u 23.3 2.1E+02 0.0046 24.0 5.4 48 49-97 204-253 (316)
45 PF10465 Inhibitor_I24: PinA p 23.1 77 0.0017 23.9 2.4 17 77-93 123-139 (140)
46 PF08651 DASH_Duo1: DASH compl 22.9 2.5E+02 0.0054 19.0 6.0 36 44-84 4-39 (78)
47 PF05008 V-SNARE: Vesicle tran 21.9 1.2E+02 0.0026 19.7 2.9 29 73-101 21-49 (79)
48 KOG2264|consensus 21.4 5.8E+02 0.013 24.4 8.0 70 50-127 109-189 (907)
49 PF11621 Sbi-IV: C3 binding do 21.1 77 0.0017 21.0 1.8 53 42-96 6-58 (69)
50 COG3755 Uncharacterized protei 20.9 82 0.0018 23.6 2.2 20 51-70 51-70 (127)
51 PF02204 VPS9: Vacuolar sortin 20.6 65 0.0014 21.6 1.5 14 76-89 89-102 (104)
No 1
>KOG4029|consensus
Probab=99.75 E-value=2.2e-18 Score=137.68 Aligned_cols=64 Identities=39% Similarity=0.619 Sum_probs=59.5
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKK-ERRLSKIETLTLAKNYIMALTNVICDMRG 98 (137)
Q Consensus 35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~-~kklSKi~tLr~Ai~YI~~L~~~L~~~~~ 98 (137)
...+|.++|+|||+||+.||.+|..||.+||+.+. ++|||||+||+.||.||.+|+++|.....
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 44578899999999999999999999999999998 99999999999999999999999987653
No 2
>KOG3960|consensus
Probab=99.75 E-value=1e-17 Score=136.42 Aligned_cols=63 Identities=30% Similarity=0.480 Sum_probs=56.8
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDS 101 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~~ 101 (137)
||++|.+|||+|+++||+||+.|++..-.. ++++|.||||||.||+||..||.||.+.....+
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~N-PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSN-PNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 899999999999999999999999988644 467999999999999999999999998765544
No 3
>KOG3898|consensus
Probab=99.68 E-value=2.3e-17 Score=134.61 Aligned_cols=65 Identities=55% Similarity=0.770 Sum_probs=60.2
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG 98 (137)
Q Consensus 34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~ 98 (137)
.++.||..+|.|||+|||+||+||+.||.+||+++.+.||+||+||++|-+||+.|++++.....
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ls~~~ 132 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVLLSGIA 132 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccccccCCC
Confidence 67789999999999999999999999999999989999999999999999999999998865443
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.63 E-value=9.5e-16 Score=97.43 Aligned_cols=53 Identities=45% Similarity=0.681 Sum_probs=49.4
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCC--CCCCCCCHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHV--KKERRLSKIETLTLAKNYIMALT 90 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~--~~~kklSKi~tLr~Ai~YI~~L~ 90 (137)
+|..||.+||.|+..||.+|+.|+.+||.. ....+++|++||..||+||.+||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 588999999999999999999999999985 36679999999999999999997
No 5
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.56 E-value=1.9e-14 Score=91.72 Aligned_cols=56 Identities=41% Similarity=0.643 Sum_probs=52.6
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L 93 (137)
+|..||..||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..+
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999998766789999999999999999999865
No 6
>smart00353 HLH helix loop helix domain.
Probab=99.49 E-value=1.4e-13 Score=86.20 Aligned_cols=52 Identities=40% Similarity=0.662 Sum_probs=48.1
Q ss_pred hHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118 43 NERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC 94 (137)
Q Consensus 43 n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~ 94 (137)
|++||.|+..||.+|+.|+.+||......+++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999987667899999999999999999998764
No 7
>KOG4447|consensus
Probab=99.47 E-value=4.5e-14 Score=108.01 Aligned_cols=65 Identities=43% Similarity=0.611 Sum_probs=60.1
Q ss_pred chHHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11118 31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDM 96 (137)
Q Consensus 31 s~~~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~ 96 (137)
.-.+.+.+|.-||.|||+|-+.||+||..||..+|++|.+ |||||.||++|..||.+|..+|..+
T Consensus 71 ~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsd-klSkiqtLklA~ryidfl~~vl~s~ 135 (173)
T KOG4447|consen 71 SLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD 135 (173)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcc-ccccccchhhcccCCchhhhccccc
Confidence 3466777899999999999999999999999999999876 9999999999999999999999765
No 8
>KOG4395|consensus
Probab=99.44 E-value=1.7e-13 Score=111.90 Aligned_cols=64 Identities=44% Similarity=0.626 Sum_probs=59.3
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
....||.++|+|||+||..||.||+.||.+||....+++|||.+||++|-.||..|..+|....
T Consensus 170 v~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~ 233 (285)
T KOG4395|consen 170 VNSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDLPM 233 (285)
T ss_pred HHHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcCcc
Confidence 4556889999999999999999999999999999999999999999999999999999996544
No 9
>KOG0561|consensus
Probab=99.41 E-value=6.6e-13 Score=110.98 Aligned_cols=83 Identities=33% Similarity=0.379 Sum_probs=68.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCchHHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHH
Q psy11118 9 SGGGAGGGRGGSSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMA 88 (137)
Q Consensus 9 ~~g~g~~g~~~~~~~k~~k~~~s~~~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~ 88 (137)
+.+||+.+.+...-..-..+.....+++.||..||--||+||+.||.+|..||.+||... +.||||..||+...+||..
T Consensus 31 s~iGg~~~lan~s~~plspkt~~D~erRmRReIANsNERRRMQSINAGFqsLr~LlPr~e-GEKLSKAAILQQTa~yI~~ 109 (373)
T KOG0561|consen 31 STIGGAPMLANRSLAPLSPKTSLDPERRMRREIANSNERRRMQSINAGFQSLRALLPRKE-GEKLSKAAILQQTADYIHQ 109 (373)
T ss_pred cccCCcccccccccCCCCCCcccCHHHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCccc-chhhHHHHHHHHHHHHHHH
Confidence 555666666655555555666667788889999999999999999999999999999764 4599999999999999999
Q ss_pred HHHH
Q psy11118 89 LTNV 92 (137)
Q Consensus 89 L~~~ 92 (137)
|...
T Consensus 110 Le~~ 113 (373)
T KOG0561|consen 110 LEGH 113 (373)
T ss_pred HHhc
Confidence 8753
No 10
>KOG3910|consensus
Probab=99.04 E-value=2.5e-10 Score=100.63 Aligned_cols=63 Identities=30% Similarity=0.536 Sum_probs=55.9
Q ss_pred HHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118 33 REKNMRRLESNERERMRMHSLNDAFQSLREVI-PHVKKERRLSKIETLTLAKNYIMALTNVICD 95 (137)
Q Consensus 33 ~~~~~rR~~~n~rER~R~~~in~af~~Lr~~l-P~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~ 95 (137)
..++.||++.|+|||.|+++||+||.+|-++. -++..+|..+|+-||..|+.-|..|++.+++
T Consensus 521 eREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 521 EREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred hHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 44566899999999999999999999996655 4466889999999999999999999999986
No 11
>KOG1318|consensus
Probab=98.87 E-value=1.2e-08 Score=88.50 Aligned_cols=65 Identities=25% Similarity=0.369 Sum_probs=56.0
Q ss_pred chHHHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118 31 NAREKNMRRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNVICD 95 (137)
Q Consensus 31 s~~~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~L~~ 95 (137)
.....+.||..||+-||+|+.+||+.+.+|..+||.+. .+-++.|-.||..+++||..|++.++.
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 33445556778999999999999999999999999863 566888999999999999999998873
No 12
>KOG1319|consensus
Probab=98.84 E-value=1e-08 Score=81.17 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=52.6
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKK----ERRLSKIETLTLAKNYIMALTNVIC 94 (137)
Q Consensus 34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~----~kklSKi~tLr~Ai~YI~~L~~~L~ 94 (137)
.+..||.+|..-||+|+.-||.+|+.|+.+||.+.. +.||||..||..+|+||.+|..-..
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~ 122 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKK 122 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467789999999999999999999999998753 3599999999999999999976443
No 13
>KOG2483|consensus
Probab=98.21 E-value=4.1e-06 Score=68.12 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=50.4
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC 94 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~ 94 (137)
.|..||+-||+|+..|.++|+.|+..||..+.+++-.-+.||+.|..||..|+....
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence 688999999999999999999999999987766555589999999999999876544
No 14
>KOG3561|consensus
Probab=97.88 E-value=3.1e-05 Score=72.17 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=50.1
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNV 92 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~ 92 (137)
.|..+|.-||+|+.++|.-+++|-.+||... -.+|+-|..|||+||..|+.+..+
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 4888999999999999999999999999854 457999999999999999988874
No 15
>KOG4304|consensus
Probab=97.77 E-value=3.6e-05 Score=63.11 Aligned_cols=59 Identities=24% Similarity=0.414 Sum_probs=50.2
Q ss_pred HHHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHH
Q psy11118 34 EKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKE-----RRLSKIETLTLAKNYIMALTNV 92 (137)
Q Consensus 34 ~~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~-----kklSKi~tLr~Ai~YI~~L~~~ 92 (137)
....|+..+=.-||+|+.-||..++.||.+||..... .||-|.+||.++++|...|+..
T Consensus 28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 28 TRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred hHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 3444667788999999999999999999999985322 6999999999999999999883
No 16
>KOG2588|consensus
Probab=97.52 E-value=4.8e-05 Score=71.63 Aligned_cols=59 Identities=25% Similarity=0.363 Sum_probs=52.5
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
.+|.+||..|++=+-.||+-+.+||+.||..+. ||.|-++|+.||+||.+|+......+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~a--Kl~kSavLr~ai~~i~dl~~~nq~lk 333 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEA--KLNKSAVLRKAIDYIEDLQGYNQKLK 333 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHh--hhhhhhhHHHHHHHHHHhhccccccc
Confidence 479999999999999999999999999997544 99999999999999999987665444
No 17
>KOG4447|consensus
Probab=96.98 E-value=0.00037 Score=53.87 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=47.4
Q ss_pred HHhHhhHH-HHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNER-ERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93 (137)
Q Consensus 38 rR~~~n~r-ER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L 93 (137)
.+.-+|.+ ||.|.+.+|++|.-|+..+|-.|.+ +.+++.+|+.+..||..|.++-
T Consensus 21 ~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgspa~-gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 21 EEECDRQRKERGRKRRLSDASTLLGKLEPGSPAD-GKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhhhhhHHHHhHHhhhhhhhhhccccCCCCCCc-ccccccccccCCCchhhHHHHH
Confidence 34455666 9999999999999999999998866 8899999999999999988753
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.55 E-value=0.0063 Score=42.87 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118 50 MHSLNDAFQSLREVIPHVK---KERRLSKIETLTLAKNYIMALTNVICDMRG 98 (137)
Q Consensus 50 ~~~in~af~~Lr~~lP~~~---~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~ 98 (137)
-.+||+-+.+|+..||... ...+.|--.+|+.+|+||..|...++++-.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSe 70 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSE 70 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999853 245888889999999999999998876643
No 19
>KOG3558|consensus
Probab=92.74 E-value=0.2 Score=46.71 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=39.6
Q ss_pred hHHHHHhHHHHHHHHHHHHhhCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118 43 NERERMRMHSLNDAFQSLREVIPHVKK--ERRLSKIETLTLAKNYIMALTNVIC 94 (137)
Q Consensus 43 n~rER~R~~~in~af~~Lr~~lP~~~~--~kklSKi~tLr~Ai~YI~~L~~~L~ 94 (137)
...-|.|+.+=|+-|.+|..+|| +|. .-.|-|+.|+|++|.|.+ |.+++.
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLR-lrk~a~ 102 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLR-LRKFAG 102 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHH-HHHHhh
Confidence 33346788999999999999999 664 468999999999999865 444444
No 20
>KOG3560|consensus
Probab=90.92 E-value=0.15 Score=46.56 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHH---HHHHHHHhhcCCCC
Q psy11118 50 MHSLNDAFQSLREVIPHVKK-ERRLSKIETLTLAKNYIM---ALTNVICDMRGEDS 101 (137)
Q Consensus 50 ~~~in~af~~Lr~~lP~~~~-~kklSKi~tLr~Ai~YI~---~L~~~L~~~~~e~~ 101 (137)
+.-||..++.|..+||+.+. --||-|+.+||+++.|+. +.|-+|.+...+..
T Consensus 37 RdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~~~~ 92 (712)
T KOG3560|consen 37 RDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSRQPA 92 (712)
T ss_pred HHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCccccC
Confidence 34589999999999997432 259999999999999986 56667766554443
No 21
>PLN02705 beta-amylase
Probab=88.99 E-value=2.7 Score=39.11 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=22.5
Q ss_pred HhHhhHHHHHhHHHHHHHHHHHHhhCCC
Q psy11118 39 RLESNERERMRMHSLNDAFQSLREVIPH 66 (137)
Q Consensus 39 R~~~n~rER~R~~~in~af~~Lr~~lP~ 66 (137)
|..-..|||+|+.---.-|..||++=-+
T Consensus 85 ~e~~~~rer~rrai~~ki~aglr~~g~~ 112 (681)
T PLN02705 85 KERTKLRERHRRAITSRMLAGLRQYGNF 112 (681)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3344678999999999999999998654
No 22
>PLN02905 beta-amylase
Probab=68.24 E-value=51 Score=31.10 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.6
Q ss_pred HhHhhHHHHHhHHHHHHHHHHHHhhCCC
Q psy11118 39 RLESNERERMRMHSLNDAFQSLREVIPH 66 (137)
Q Consensus 39 R~~~n~rER~R~~~in~af~~Lr~~lP~ 66 (137)
|.....|||+|+.---.-|..||++=-+
T Consensus 87 re~~~~rer~rrai~~~i~~glr~~g~~ 114 (702)
T PLN02905 87 KERTKLRERHRRAITARILAGLRRHGNY 114 (702)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3345678999999999999999998654
No 23
>KOG3559|consensus
Probab=67.45 E-value=6.5 Score=35.26 Aligned_cols=46 Identities=22% Similarity=0.327 Sum_probs=36.7
Q ss_pred HHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHH
Q psy11118 47 RMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNV 92 (137)
Q Consensus 47 R~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~ 92 (137)
|.|++.=|-.|.+|.+.||-.. -.-.|-|..|+|++..||.+=.-.
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vF 56 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVF 56 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhc
Confidence 4677888999999999999532 123599999999999999875543
No 24
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=57.01 E-value=16 Score=28.11 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=22.5
Q ss_pred HhHhhHHHHHhHHHHHHHHHHHHhhCCC
Q psy11118 39 RLESNERERMRMHSLNDAFQSLREVIPH 66 (137)
Q Consensus 39 R~~~n~rER~R~~~in~af~~Lr~~lP~ 66 (137)
|.....|||+|+.---.-|..||.+==|
T Consensus 12 rEnnk~RERrRRAIaakIfaGLR~~Gny 39 (150)
T PF05687_consen 12 RENNKRRERRRRAIAAKIFAGLRAHGNY 39 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445669999999989999999997643
No 25
>PLN02705 beta-amylase
Probab=55.80 E-value=14 Score=34.58 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q psy11118 51 HSLNDAFQSLR 61 (137)
Q Consensus 51 ~~in~af~~Lr 61 (137)
-++|+-+..|-
T Consensus 118 ~d~n~vl~al~ 128 (681)
T PLN02705 118 ADMNDVLAALA 128 (681)
T ss_pred cchHHHHHHHH
Confidence 45666666553
No 26
>PRK13702 replication protein; Provisional
Probab=51.63 E-value=41 Score=23.57 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCchHHHHHHHhHhhHHHHHhHHHHHHHH-HHHHhhCCCCCCCCCCCHHHHHHHHHH
Q psy11118 20 SSSGRRRKPVLNAREKNMRRLESNERERMRMHSLNDAF-QSLREVIPHVKKERRLSKIETLTLAKN 84 (137)
Q Consensus 20 ~~~~k~~k~~~s~~~~~~rR~~~n~rER~R~~~in~af-~~Lr~~lP~~~~~kklSKi~tLr~Ai~ 84 (137)
.+...|+..+.+.+++| +.+-+|-|.=.+.||.-+ ..|++.|-.+-....|+..+.|...|+
T Consensus 14 ~kR~yRKG~Pls~aErQ---r~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 14 AKRAYRKGNPLSAAEKQ---RASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCCcCCCCCCHHHHH---HHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34556666777777753 345566666666777665 577777766666678888888777665
No 27
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=45.46 E-value=29 Score=24.94 Aligned_cols=20 Identities=10% Similarity=0.286 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy11118 76 IETLTLAKNYIMALTNVICD 95 (137)
Q Consensus 76 i~tLr~Ai~YI~~L~~~L~~ 95 (137)
+.+++++|+|+.+.|+.|..
T Consensus 61 frLaQl~ieYLl~~q~~L~~ 80 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSS 80 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998874
No 28
>KOG3582|consensus
Probab=43.22 E-value=5.4 Score=37.70 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccc
Q psy11118 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVK--KERRLSKIETLTLAKNYIMALTNVICDMRGEDSPYVAPDSSTGLIT 114 (137)
Q Consensus 37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~--~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~~~~~~~~s~~~~~~ 114 (137)
.++..+---|.+|..++...|+.|-..+-..+ ..-|+++-..|+...+||..++..+..+..|+-.+....++-.++.
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~s~~~A~~ 729 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEISELNAVI 729 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhhHHHHHHH
Confidence 35677778899999999999998877664432 2348888888999999999999988877776654444444444444
No 29
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.23 E-value=1.2e+02 Score=25.78 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=43.9
Q ss_pred HHHHHHhHhhHHHH-HhHHHHHHHHHHHHhhCCCCCC---CCCCCHHH---HHHHHHHHHHHHHHHHHhhcC
Q psy11118 34 EKNMRRLESNERER-MRMHSLNDAFQSLREVIPHVKK---ERRLSKIE---TLTLAKNYIMALTNVICDMRG 98 (137)
Q Consensus 34 ~~~~rR~~~n~rER-~R~~~in~af~~Lr~~lP~~~~---~kklSKi~---tLr~Ai~YI~~L~~~L~~~~~ 98 (137)
+.-.|.+.+..+|= .|+++=-..+++||..|--+.. +..-..|| -|+.|-.=|.+|+++++.++.
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555553 3677777788899988865432 12444554 488888889999999997774
No 30
>PF04839 PSRP-3_Ycf65: Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65); InterPro: IPR006924 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This small acidic protein is found in 30S ribosomal subunit of cyanobacteria and plant plastids. In plants it has been named plastid-specific ribosomal protein 3 (PSRP-3), and in cyanobacteria it is named Ycf65. Plastid-specific ribosomal proteins may mediate the effects of nuclear factors on plastid translation. The acidic PSRPs are thought to contribute to protein-protein interactions in the 30S subunit, and are not thought to bind RNA [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome, 0009536 plastid; PDB: 2KT9_A.
Probab=37.38 E-value=22 Score=22.45 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=25.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 54 NDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 54 n~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
++|.+.|+..|-.-|==-.-.+|.+|-.|.+-|++=|+
T Consensus 10 ~DAWe~lk~eLe~K~WIs~~e~i~lLN~~TeiIN~Wqe 47 (49)
T PF04839_consen 10 EDAWEQLKNELESKPWISEKERIELLNQATEIINYWQE 47 (49)
T ss_dssp S-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46778888777322211255789999999999988765
No 31
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=31.64 E-value=50 Score=21.68 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHhhCCC
Q psy11118 49 RMHSLNDAFQSLREVIPH 66 (137)
Q Consensus 49 R~~~in~af~~Lr~~lP~ 66 (137)
|++.=|.+|+.|-.+||.
T Consensus 3 rl~~h~~~Fd~Ll~LIPA 20 (64)
T PF15459_consen 3 RLRAHSSFFDGLLSLIPA 20 (64)
T ss_pred HHHHHHHHHHHHHHhCCh
Confidence 678889999999999995
No 32
>PRK02724 hypothetical protein; Provisional
Probab=30.44 E-value=66 Score=23.36 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 54 NDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 54 n~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
++|.+.|+..|-.-+==-.-.+|.+|-.|.+-|++=|+
T Consensus 44 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~WQe 81 (104)
T PRK02724 44 NDAWEQLKTELESKHWITENERVEVLNKATEVINYWQE 81 (104)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57888899888432211255689999999999999998
No 33
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.95 E-value=39 Score=24.63 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHhhCC
Q psy11118 48 MRMHSLNDAFQSLREVIP 65 (137)
Q Consensus 48 ~R~~~in~af~~Lr~~lP 65 (137)
..+..||..|+.|+..|-
T Consensus 79 ~~v~~L~~s~~RL~~eV~ 96 (132)
T PF10392_consen 79 SSVESLQSSYERLRSEVI 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478999999999998883
No 34
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=28.83 E-value=93 Score=27.55 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 50 MHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 50 ~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
+.++-++|+.|++..|..|.. ++-+-..|..|.+.-..|..
T Consensus 57 v~~~~~~l~AL~~qap~HPYs-~vG~~~v~~~~~~a~~l~~~ 97 (421)
T COG3075 57 VTDIHDGLDALRQQAPAHPYS-LVGAQKVLDLAQQAEALLDE 97 (421)
T ss_pred cccccchHHHHHhcCccCchh-hhhhHHHHHHHHHHHHHHHh
Confidence 567789999999999999875 66666666666665555544
No 35
>KOG0999|consensus
Probab=27.58 E-value=1.3e+02 Score=28.26 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCC-C----------------CCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11118 55 DAFQSLREVIPH-V----------------KKERRLSKIETLTLAKNYIMALTNVICDMRGEDS 101 (137)
Q Consensus 55 ~af~~Lr~~lP~-~----------------~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~~ 101 (137)
.-|..||.++|. + ..+.|-+=-..|++||.--..|.+-|+++.-+..
T Consensus 672 atfsslramf~~R~ee~~tq~de~~~ql~aaedekKtln~llrmaiqqklaltqrle~~e~d~~ 735 (772)
T KOG0999|consen 672 ATFSSLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTLNQLLRMAIQQKLALTQRLEELELDHE 735 (772)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 357888888875 1 1122334456789999999999998987765443
No 36
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=27.37 E-value=51 Score=19.38 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=13.6
Q ss_pred HHHhHHHHHHHHHHHHh
Q psy11118 46 ERMRMHSLNDAFQSLRE 62 (137)
Q Consensus 46 ER~R~~~in~af~~Lr~ 62 (137)
...++..||+||+.|.+
T Consensus 39 ~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 39 AEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34579999999999863
No 37
>CHL00163 ycf65 putative ribosomal protein 3; Validated
Probab=26.59 E-value=84 Score=22.61 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 54 NDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 54 n~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
++|-+.|+..|-.-|==-.-.+|.+|-.|.+-|++=|+
T Consensus 39 ~DAWe~LK~~LesK~WIs~~~~i~lLN~~TeiIN~Wqe 76 (99)
T CHL00163 39 TDAWELLKLELESKPWISEDERIEILNKTTEIINYWQE 76 (99)
T ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47888898888432211255689999999999999998
No 38
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=26.10 E-value=54 Score=19.69 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHh
Q psy11118 48 MRMHSLNDAFQSLRE 62 (137)
Q Consensus 48 ~R~~~in~af~~Lr~ 62 (137)
.++..||+||+.|.+
T Consensus 43 ~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 43 EKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHHHcC
Confidence 479999999999975
No 39
>KOG3429|consensus
Probab=26.09 E-value=47 Score=26.11 Aligned_cols=20 Identities=25% Similarity=0.627 Sum_probs=15.8
Q ss_pred HHHHhHHHHHHHHHHHHhhC
Q psy11118 45 RERMRMHSLNDAFQSLREVI 64 (137)
Q Consensus 45 rER~R~~~in~af~~Lr~~l 64 (137)
+-|.|..+|-+||+.|+..|
T Consensus 104 ~TRsq~~NiaDcleKlr~~I 123 (172)
T KOG3429|consen 104 KTRSQHKNIADCLEKLRDII 123 (172)
T ss_pred hhHHhhccHHHHHHHHHHHH
Confidence 34556677889999999987
No 40
>KOG1164|consensus
Probab=25.11 E-value=1.4e+02 Score=24.33 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=24.4
Q ss_pred HHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy11118 58 QSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92 (137)
Q Consensus 58 ~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~ 92 (137)
..|+...| ++++|+-.+|+.|++-|..|+.+
T Consensus 108 ~dl~~~~~----~~~fs~~T~l~ia~q~l~~l~~l 138 (322)
T KOG1164|consen 108 EDLRKRNP----PGRFSRKTVLRIAIQNLNALEDL 138 (322)
T ss_pred HHHHHhCC----CCCcCHhHHHHHHHHHHHHHHHH
Confidence 34555444 46999999999999999999863
No 41
>PF12179 IKKbetaNEMObind: I-kappa-kinase-beta NEMO binding domain; InterPro: IPR022007 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with PF00069 from PFAM. These proteins are involved in inflammatory reactions. They cause release of NF-kappa-B into the nucleus of inflammatory cells and upregulation of transcription of proinflammatory cytokines. They perform this function by phosphorylating I-kappa-B proteins which are targeted for degradation to release NF-kappa-B. This kinase (I-kappa-kinase-beta) is found in association with IKK-alpha and NEMO (NF-kappa-B essential modulator). This domain is the binding site of IKK-beta for NEMO. ; GO: 0008384 IkappaB kinase activity; PDB: 3BRT_C 3BRV_C.
Probab=24.55 E-value=94 Score=18.62 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11118 77 ETLTLAKNYIMALTNVICDMRGEDS 101 (137)
Q Consensus 77 ~tLr~Ai~YI~~L~~~L~~~~~e~~ 101 (137)
+.|..+-+|...|+.++.+...+.+
T Consensus 3 ~lv~En~~~lsqL~s~mqdt~~Eq~ 27 (38)
T PF12179_consen 3 QLVEENQNYLSQLESLMQDTMKEQD 27 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788899999999999998776653
No 42
>KOG1748|consensus
Probab=24.46 E-value=34 Score=25.77 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 69 KERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 69 ~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
++++.-|+.+.+.|++||..+-.
T Consensus 106 pd~dAdki~t~~da~~yI~~~~d 128 (131)
T KOG1748|consen 106 PDEDADKIKTVRDAADYIADKPD 128 (131)
T ss_pred CcchhhhhCCHHHHHHHHHhccc
Confidence 36789999999999999987643
No 43
>KOG1189|consensus
Probab=24.01 E-value=71 Score=30.95 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=23.1
Q ss_pred HhhHHHHHhHHHHHHHHHHHHhhCCCC
Q psy11118 41 ESNERERMRMHSLNDAFQSLREVIPHV 67 (137)
Q Consensus 41 ~~n~rER~R~~~in~af~~Lr~~lP~~ 67 (137)
.+..+||.|.+.||.+|...-..||.+
T Consensus 710 ~~EQ~Er~rr~~ln~~FksF~~kv~~~ 736 (960)
T KOG1189|consen 710 EQEQEERDRRAKLNMAFKSFAEKVAEA 736 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467889999999999999988888643
No 44
>PF11279 DUF3080: Protein of unknown function (DUF3080); InterPro: IPR021431 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.
Probab=23.28 E-value=2.1e+02 Score=24.03 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHhhc
Q psy11118 49 RMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKN--YIMALTNVICDMR 97 (137)
Q Consensus 49 R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~--YI~~L~~~L~~~~ 97 (137)
+...+|..++.. ..-|.++.++.-.|.+||+.... ||..+|--|.++.
T Consensus 204 ~L~~~t~~L~~~-~~~~lC~~~~~~~~~~~L~NVF~~~yi~~IQpylA~l~ 253 (316)
T PF11279_consen 204 WLNQATQQLEQR-DNSILCGPGRNTTKARILRNVFQKYYIEQIQPYLAQLD 253 (316)
T ss_pred HHHHHHHHHHcc-cCCCCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 455555555555 56777888999999999999887 5666655555433
No 45
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=23.05 E-value=77 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11118 77 ETLTLAKNYIMALTNVI 93 (137)
Q Consensus 77 ~tLr~Ai~YI~~L~~~L 93 (137)
...+.|.+||..|...|
T Consensus 123 nLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 123 NLMQAAAEYIEWLETQL 139 (140)
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 47899999999998765
No 46
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=22.92 E-value=2.5e+02 Score=18.97 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHH
Q psy11118 44 ERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKN 84 (137)
Q Consensus 44 ~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~ 84 (137)
.+|..-+.+||..|+.+-..|-.. + +.++.+..+++
T Consensus 4 ~kEL~~Lr~IN~~ie~~~~~L~~a----~-~~~~~v~~~~~ 39 (78)
T PF08651_consen 4 EKELEQLRKINPVIEGLIETLRSA----K-SNMNRVQETVE 39 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHHHHHHH
Confidence 568888999999999887766421 1 44555554443
No 47
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.90 E-value=1.2e+02 Score=19.65 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy11118 73 LSKIETLTLAKNYIMALTNVICDMRGEDS 101 (137)
Q Consensus 73 lSKi~tLr~Ai~YI~~L~~~L~~~~~e~~ 101 (137)
-.|-..|+.+-.+|....++|.+|.-|..
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888889888888888876543
No 48
>KOG2264|consensus
Probab=21.44 E-value=5.8e+02 Score=24.38 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----------CC-CCCCccccccCCC
Q psy11118 50 MHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGEDSPY----------VA-PDSSTGLITSGTQ 118 (137)
Q Consensus 50 ~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~~~~----------~~-~~s~~~~~~ss~q 118 (137)
..+||.-.++|++.||. + |.+.+++-+. |..-|..+++....+.+- .. .....+..+++.+
T Consensus 109 I~~~n~kiEelk~~i~~-----~--q~eL~~Lk~~-ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~pp~~~~~c~ 180 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIPQ-----K--QLELSALKGE-IEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEPPSQISPCQ 180 (907)
T ss_pred HHHHHHHHHHHHHHHHH-----h--HHHHHHHHhH-HHHHHHHHHHHHhhcCCceeeccccCcccCcccCCCccccCccc
Confidence 56778888888888884 1 2233333222 445555555544333211 11 2333455666777
Q ss_pred CCCccccCC
Q psy11118 119 GDTALTAHA 127 (137)
Q Consensus 119 ~~~~~~~~~ 127 (137)
..-|++.+.
T Consensus 181 lhncfdySR 189 (907)
T KOG2264|consen 181 LHNCFDYSR 189 (907)
T ss_pred chhcccccc
Confidence 766666543
No 49
>PF11621 Sbi-IV: C3 binding domain 4 of IgG-bind protein SBI; InterPro: IPR021657 This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation []. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold []. ; PDB: 2JVG_A 2JVH_A 2WY7_Q 2WY8_Q.
Probab=21.10 E-value=77 Score=21.02 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=33.8
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11118 42 SNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDM 96 (137)
Q Consensus 42 ~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~ 96 (137)
+-.|--.|+..-|+|+..|...=- -.++++..-++=++..+--.+||+.|+..
T Consensus 6 aivrhder~~~AN~Ai~~L~~~DS--I~NRR~AQR~VNK~~~D~~~~~QK~LD~i 58 (69)
T PF11621_consen 6 AIVRHDERVMSANDAISKLQQKDS--IQNRRAAQREVNKAPMDSKNHFQKQLDQI 58 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhhccc--HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 345666789999999999976432 12345555555555566677888877754
No 50
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.91 E-value=82 Score=23.57 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhCCCCCCC
Q psy11118 51 HSLNDAFQSLREVIPHVKKE 70 (137)
Q Consensus 51 ~~in~af~~Lr~~lP~~~~~ 70 (137)
..||.||..|...++..|..
T Consensus 51 a~LN~AY~~ll~~l~~~~~~ 70 (127)
T COG3755 51 AELNKAYKALLKRLQDSPRT 70 (127)
T ss_pred HHHHHHHHHHHHHhccChHH
Confidence 46999999999999865543
No 51
>PF02204 VPS9: Vacuolar sorting protein 9 (VPS9) domain; InterPro: IPR003123 This domain is present in yeast vacuolar sorting protein 9 and other proteins.; PDB: 1TXU_A 2OT3_A 2EFD_A 2EFE_C 2EFC_C 2EFH_A.
Probab=20.61 E-value=65 Score=21.63 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q psy11118 76 IETLTLAKNYIMAL 89 (137)
Q Consensus 76 i~tLr~Ai~YI~~L 89 (137)
+.+|+.|++||..|
T Consensus 89 ltt~~aA~~~i~~~ 102 (104)
T PF02204_consen 89 LTTFEAAVEYIQNL 102 (104)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHc
Confidence 56777777777655
Done!