Query psy11118
Match_columns 137
No_of_seqs 106 out of 781
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:28:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 1.6E-25 5.5E-30 146.0 7.8 58 38-95 2-59 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 2.7E-24 9.3E-29 143.4 7.1 58 36-94 10-67 (68)
3 4aya_A DNA-binding protein inh 99.9 3.2E-22 1.1E-26 141.4 7.2 73 28-100 14-87 (97)
4 2lfh_A DNA-binding protein inh 99.9 5.1E-23 1.7E-27 137.1 2.5 50 42-91 18-67 (68)
5 3u5v_A Protein MAX, transcript 99.8 2.7E-19 9.2E-24 121.4 4.8 61 37-97 4-65 (76)
6 1hlo_A Protein (transcription 99.7 2.1E-17 7E-22 112.3 8.1 63 35-98 9-71 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 99.7 8.2E-17 2.8E-21 111.6 8.3 60 36-95 4-63 (88)
8 1nkp_B MAX protein, MYC proto- 99.7 1.1E-16 3.9E-21 109.1 7.5 59 38-97 2-60 (83)
9 1nlw_A MAD protein, MAX dimeri 99.6 6E-16 2.1E-20 105.7 8.4 59 39-97 2-60 (80)
10 1am9_A Srebp-1A, protein (ster 99.5 1.8E-14 6.2E-19 98.4 8.4 61 36-98 4-64 (82)
11 1an4_A Protein (upstream stimu 99.5 3.8E-15 1.3E-19 97.3 1.8 54 38-91 5-61 (65)
12 4h10_B Circadian locomoter out 99.4 4.2E-13 1.4E-17 89.9 8.7 60 36-97 6-65 (71)
13 1a0a_A BHLH, protein (phosphat 99.4 3.9E-14 1.3E-18 92.7 2.5 56 38-93 2-61 (63)
14 4ati_A MITF, microphthalmia-as 99.4 7.1E-13 2.4E-17 96.2 7.5 61 37-97 26-87 (118)
15 4h10_A ARYL hydrocarbon recept 99.4 6.1E-13 2.1E-17 89.4 5.2 57 35-91 6-63 (73)
16 4f3l_A Mclock, circadian locom 98.9 3.2E-09 1.1E-13 87.4 6.7 57 35-93 9-65 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 3E-08 1E-12 82.6 5.2 56 36-91 11-67 (387)
18 4ath_A MITF, microphthalmia-as 98.2 4.2E-06 1.4E-10 57.3 6.6 47 50-96 4-51 (83)
19 3muj_A Transcription factor CO 95.0 0.05 1.7E-06 40.2 5.7 39 52-90 95-134 (138)
20 3mlp_A Transcription factor CO 79.4 0.33 1.1E-05 41.0 -0.4 38 52-89 321-359 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 46.3 16 0.00054 19.4 2.3 20 72-91 1-20 (26)
22 1iur_A KIAA0730 protein; DNAJ 40.7 29 0.00098 22.8 3.5 21 48-68 58-78 (88)
23 1faf_A Large T antigen; J doma 33.2 24 0.00083 22.4 2.1 17 48-64 50-66 (79)
24 1p3q_Q VPS9P, vacuolar protein 32.5 48 0.0017 20.3 3.3 24 46-69 5-28 (54)
25 1vcs_A Vesicle transport throu 31.2 48 0.0017 22.3 3.5 26 74-99 35-60 (102)
26 1gk7_A Vimentin; intermediate 27.8 50 0.0017 18.8 2.6 19 44-62 2-20 (39)
27 2guz_A Mitochondrial import in 25.6 43 0.0015 20.7 2.3 15 49-63 53-67 (71)
28 2dn9_A DNAJ homolog subfamily 21.2 55 0.0019 20.2 2.1 15 48-62 48-62 (79)
29 1wh7_A ZF-HD homeobox family p 21.1 79 0.0027 20.1 3.0 8 51-59 30-37 (80)
30 2dmx_A DNAJ homolog subfamily 20.6 56 0.0019 20.9 2.1 16 48-63 51-66 (92)
31 2ctr_A DNAJ homolog subfamily 20.6 56 0.0019 20.8 2.1 16 47-62 46-61 (88)
32 2i9o_A MHB8A peptide; beta-hai 20.2 1.2E+02 0.0041 16.8 3.1 9 10-18 12-20 (37)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.92 E-value=1.6e-25 Score=145.99 Aligned_cols=58 Identities=55% Similarity=0.849 Sum_probs=55.9
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICD 95 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~ 95 (137)
+|.+||+|||+||++||+||+.||.+||+++.++|||||+||+.||+||.+|+++|++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~ 59 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS 59 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999864
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.90 E-value=2.7e-24 Score=143.38 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=54.4
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy11118 36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC 94 (137)
Q Consensus 36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~ 94 (137)
..+|.+||+|||+||+.||+||+.||.+||..| ++|||||+||+.||+||.+|+++|+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~-~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNP-NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT-TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 458999999999999999999999999999866 7899999999999999999999885
No 3
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.2e-22 Score=141.45 Aligned_cols=73 Identities=19% Similarity=0.373 Sum_probs=52.6
Q ss_pred CCCchHHHHHHHhHh-hHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy11118 28 PVLNAREKNMRRLES-NERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGED 100 (137)
Q Consensus 28 ~~~s~~~~~~rR~~~-n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~e~ 100 (137)
...++......|..+ ..+||.||++||+||+.||++||++|.++||||||||++||+||.+|+++|++.....
T Consensus 14 ~~lseqs~~i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~ 87 (97)
T 4aya_A 14 NSLSDHSLGISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS 87 (97)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 355565555555544 4666899999999999999999999999999999999999999999999998865443
No 4
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-23 Score=137.08 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=48.4
Q ss_pred hhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 42 SNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 42 ~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
+|+|||+||++||+||+.||++||++|.++||||||||+.||+||.+||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999999985
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.77 E-value=2.7e-19 Score=121.42 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=51.6
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 37 MRRLESNERERMRMHSLNDAFQSLREVIPH-VKKERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~-~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
.+|.+||++||+|+..||++|+.|+.+||. .+.++.+||++||+.||+||..|++.|.+..
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999994 5667777999999999999999999998753
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.72 E-value=2.1e-17 Score=112.31 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=56.6
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG 98 (137)
Q Consensus 35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~ 98 (137)
...+|..||++||+|+..||.+|+.|+.+||.++. .|+||++||+.||+||.+|+..+..+..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~-~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQG-EKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTT-SCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999999999998764 4899999999999999999998887653
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.69 E-value=8.2e-17 Score=111.65 Aligned_cols=60 Identities=28% Similarity=0.448 Sum_probs=55.5
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q psy11118 36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICD 95 (137)
Q Consensus 36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~ 95 (137)
..+|..||+.||+|+..||++|+.|+.+||.++.+.|+||+.||+.||+||..|+.....
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999999988788999999999999999999987554
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.67 E-value=1.1e-16 Score=109.09 Aligned_cols=59 Identities=27% Similarity=0.451 Sum_probs=53.3
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
+|..||.+||+|+..||++|+.|+.+||.++ +.|+||++||+.||+||.+|+..+..+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~-~~k~sK~~iL~~Ai~YI~~L~~~~~~l~ 60 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ-GEKASRAQILDKATEYIQYMRRKNHTHQ 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT-TSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999866 4589999999999999999997766543
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.64 E-value=6e-16 Score=105.67 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=54.7
Q ss_pred HhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 39 RLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 39 R~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
|..||+.||+|+..||.+|+.|+..||.++.+.|+||+.||+.|++||..|+.....+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999888999999999999999999998765443
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.55 E-value=1.8e-14 Score=98.40 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=55.1
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q psy11118 36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG 98 (137)
Q Consensus 36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~~ 98 (137)
..+|..||..||+|+..||++|..|+.+||.. +.|++|+.||..||+||.+|+..+..+..
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~--~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT--EAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999963 56999999999999999999998876654
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=3.8e-15 Score=97.27 Aligned_cols=54 Identities=35% Similarity=0.443 Sum_probs=49.5
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKE---RRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~---kklSKi~tLr~Ai~YI~~L~~ 91 (137)
+|..||..||+|+..||++|+.|+.+||.+... .+++|+.||..||+||.+|+.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~ 61 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999987643 489999999999999999986
No 12
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=4.2e-13 Score=89.92 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=54.1
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
..+|..+|..||+|+..||..|..|+.+||. ...|+.|..||+.||+||..|+..+..+.
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~--~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG--NARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--CCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC--CCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4578899999999999999999999999994 44699999999999999999999887653
No 13
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.43 E-value=3.9e-14 Score=92.66 Aligned_cols=56 Identities=29% Similarity=0.273 Sum_probs=50.1
Q ss_pred HHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKK----ERRLSKIETLTLAKNYIMALTNVI 93 (137)
Q Consensus 38 rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~----~kklSKi~tLr~Ai~YI~~L~~~L 93 (137)
+|..|+.-||.|+..||.+|+.|+.+||.... ..++||.+||.+||+||.+|++.+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999997532 479999999999999999998743
No 14
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.39 E-value=7.1e-13 Score=96.17 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=49.9
Q ss_pred HHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q psy11118 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTNVICDMR 97 (137)
Q Consensus 37 ~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~~L~~~~ 97 (137)
.+|..||..||+|+..||+.|..|+.+||.+. .+.|++|..||..||+||.+|+..+..+.
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~ 87 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 87 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999864 35799999999999999999998777665
No 15
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.36 E-value=6.1e-13 Score=89.44 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=51.0
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHV-KKERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~-~~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
...+|..|+..||+|+..||.+|+.|+.+||.+ ....||.|..||++||+||..|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 445788999999999999999999999999964 345799999999999999999975
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.86 E-value=3.2e-09 Score=87.38 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=43.7
Q ss_pred HHHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy11118 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVI 93 (137)
Q Consensus 35 ~~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~~~kklSKi~tLr~Ai~YI~~L~~~L 93 (137)
...+|..||..||+|+..||..|..|+.+|| ....||.|..||++||.||..|+.+-
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p--~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLP--GNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCC--SSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCC--CCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3457888999999999999999999999999 34569999999999999999999854
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.62 E-value=3e-08 Score=82.60 Aligned_cols=56 Identities=21% Similarity=0.357 Sum_probs=49.6
Q ss_pred HHHHhHhhHHHHHhHHHHHHHHHHHHhhCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q psy11118 36 NMRRLESNERERMRMHSLNDAFQSLREVIPHVK-KERRLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 36 ~~rR~~~n~rER~R~~~in~af~~Lr~~lP~~~-~~kklSKi~tLr~Ai~YI~~L~~ 91 (137)
..+|..||..||+|+..||..|.+|+.+||... ...||.|..||++||.||..|+.
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 346888999999999999999999999999643 45699999999999999999873
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.19 E-value=4.2e-06 Score=57.34 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q psy11118 50 MHSLNDAFQSLREVIPHV-KKERRLSKIETLTLAKNYIMALTNVICDM 96 (137)
Q Consensus 50 ~~~in~af~~Lr~~lP~~-~~~kklSKi~tLr~Ai~YI~~L~~~L~~~ 96 (137)
+-+||+.|.+|...||.. ..+-+.+|-.||+.|++||.+|++....+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999974 35679999999999999999998855543
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=94.95 E-value=0.05 Score=40.20 Aligned_cols=39 Identities=33% Similarity=0.431 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCCCCC-CCCCCHHHHHHHHHHHHHHHH
Q psy11118 52 SLNDAFQSLREVIPHVKK-ERRLSKIETLTLAKNYIMALT 90 (137)
Q Consensus 52 ~in~af~~Lr~~lP~~~~-~kklSKi~tLr~Ai~YI~~L~ 90 (137)
.|+-+|+.|.+.||-+|. ..+|.|--||+.|.++...|-
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 578899999999999874 379999999999999888764
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=79.35 E-value=0.33 Score=41.03 Aligned_cols=38 Identities=34% Similarity=0.493 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhCCCCCCC-CCCCHHHHHHHHHHHHHHH
Q psy11118 52 SLNDAFQSLREVIPHVKKE-RRLSKIETLTLAKNYIMAL 89 (137)
Q Consensus 52 ~in~af~~Lr~~lP~~~~~-kklSKi~tLr~Ai~YI~~L 89 (137)
.|+-+|+.|.+.||-.|.+ .+|.|-.||+.|.+++..|
T Consensus 321 tIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 321 TIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp TTTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 4667899999999998743 7999999999999988877
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=46.32 E-value=16 Score=19.41 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy11118 72 RLSKIETLTLAKNYIMALTN 91 (137)
Q Consensus 72 klSKi~tLr~Ai~YI~~L~~ 91 (137)
+|..|++|-.|.+|+.....
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46689999999999987665
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=40.71 E-value=29 Score=22.75 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=15.7
Q ss_pred HhHHHHHHHHHHHHhhCCCCC
Q psy11118 48 MRMHSLNDAFQSLREVIPHVK 68 (137)
Q Consensus 48 ~R~~~in~af~~Lr~~lP~~~ 68 (137)
.+.+.||+||+.|.+..+-.+
T Consensus 58 ~~F~~I~~AYevL~~~~~r~~ 78 (88)
T 1iur_A 58 EVFKHLQNEINRLEKQAFLDQ 78 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 468888888888888776433
No 23
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=33.21 E-value=24 Score=22.43 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHhhC
Q psy11118 48 MRMHSLNDAFQSLREVI 64 (137)
Q Consensus 48 ~R~~~in~af~~Lr~~l 64 (137)
.+++.||+||+.|...+
T Consensus 50 ~~f~~i~~AYe~L~~~~ 66 (79)
T 1faf_A 50 ALMQELNSLWGTFKTEV 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHH
Confidence 36999999999998744
No 24
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=32.49 E-value=48 Score=20.30 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHHHHhhCCCCCC
Q psy11118 46 ERMRMHSLNDAFQSLREVIPHVKK 69 (137)
Q Consensus 46 ER~R~~~in~af~~Lr~~lP~~~~ 69 (137)
+|.+....+++++.|+.+.|.+..
T Consensus 5 ~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 5 KKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcccCCH
Confidence 456677888999999999998753
No 25
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.17 E-value=48 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhcCC
Q psy11118 74 SKIETLTLAKNYIMALTNVICDMRGE 99 (137)
Q Consensus 74 SKi~tLr~Ai~YI~~L~~~L~~~~~e 99 (137)
.|...|+.+-..|....++|.+|.-|
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777777766644
No 26
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=27.76 E-value=50 Score=18.77 Aligned_cols=19 Identities=26% Similarity=0.578 Sum_probs=14.0
Q ss_pred HHHHHhHHHHHHHHHHHHh
Q psy11118 44 ERERMRMHSLNDAFQSLRE 62 (137)
Q Consensus 44 ~rER~R~~~in~af~~Lr~ 62 (137)
..|+.-|+.||+.|..--.
T Consensus 2 ~~EKe~mq~LNdrlAsyid 20 (39)
T 1gk7_A 2 SNEKVELQELNDRFANYID 20 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4577789999998875433
No 27
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.56 E-value=43 Score=20.65 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHhh
Q psy11118 49 RMHSLNDAFQSLREV 63 (137)
Q Consensus 49 R~~~in~af~~Lr~~ 63 (137)
+++.||.|++.|.+.
T Consensus 53 ~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 53 LATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 789999999999874
No 28
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.21 E-value=55 Score=20.22 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHh
Q psy11118 48 MRMHSLNDAFQSLRE 62 (137)
Q Consensus 48 ~R~~~in~af~~Lr~ 62 (137)
.+++.||+||+.|..
T Consensus 48 ~~f~~i~~Ay~~L~d 62 (79)
T 2dn9_A 48 EKFSQLAEAYEVLSD 62 (79)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC
Confidence 478999999999975
No 29
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.15 E-value=79 Score=20.15 Aligned_cols=8 Identities=25% Similarity=0.405 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy11118 51 HSLNDAFQS 59 (137)
Q Consensus 51 ~~in~af~~ 59 (137)
..|. +|..
T Consensus 30 ~~Le-~F~~ 37 (80)
T 1wh7_A 30 EKML-AFAE 37 (80)
T ss_dssp HHHH-HHHH
T ss_pred HHHH-HHHH
Confidence 4455 5653
No 30
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.61 E-value=56 Score=20.91 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHHHHhh
Q psy11118 48 MRMHSLNDAFQSLREV 63 (137)
Q Consensus 48 ~R~~~in~af~~Lr~~ 63 (137)
.+++.||+||+.|.+-
T Consensus 51 ~~f~~i~~Ay~~L~d~ 66 (92)
T 2dmx_A 51 KKFKLVSEAYEVLSDS 66 (92)
T ss_dssp HHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHCCH
Confidence 4689999999999764
No 31
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.58 E-value=56 Score=20.80 Aligned_cols=16 Identities=13% Similarity=0.567 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHh
Q psy11118 47 RMRMHSLNDAFQSLRE 62 (137)
Q Consensus 47 R~R~~~in~af~~Lr~ 62 (137)
..+++.||+||+.|.+
T Consensus 46 ~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 46 EAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3578999999999976
No 32
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=20.17 E-value=1.2e+02 Score=16.82 Aligned_cols=9 Identities=67% Similarity=1.417 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q psy11118 10 GGGAGGGRG 18 (137)
Q Consensus 10 ~g~g~~g~~ 18 (137)
.||||+|+|
T Consensus 12 egggggggg 20 (37)
T 2i9o_A 12 EGGGGGGGG 20 (37)
T ss_dssp CCSCCCCSC
T ss_pred ecCCCCCcc
Confidence 344444443
Done!