RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11118
         (137 letters)



>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 59.1 bits (143), Expect = 2e-13
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 35 KNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVIC 94
           N++R   N  ER R + L  +F +LR+ IP ++   +  K+  L  A  YI+++     
Sbjct: 3  MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ 62

Query: 95 DMRGE 99
           +  E
Sbjct: 63 KLISE 67


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 56.1 bits (135), Expect = 3e-12
 Identities = 15/61 (24%), Positives = 26/61 (42%)

Query: 39 RLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRG 98
          R   NE E+ R   L  + + L+ ++P      R + +  LT AK +I  L +       
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVH 61

Query: 99 E 99
          +
Sbjct: 62 Q 62


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 68

 Score = 55.6 bits (134), Expect = 3e-12
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICD 95
          RR  +  RER R+  +N+AF++L+         +RL K+E L  A  YI  L  ++ D
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSN-PNQRLPKVEILRNAIRYIEGLQALLRD 68


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 83

 Score = 53.3 bits (128), Expect = 4e-11
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMR 97
          +R   N  ER R   + D+F SLR+ +P + +  + S+ + L  A  YI  +       +
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSVPSL-QGEKASRAQILDKATEYIQYMRRKNHTHQ 60

Query: 98 GE 99
           +
Sbjct: 61 QD 62


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 52.5 bits (126), Expect = 6e-11
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 38 RRLESNERERMRMHSLNDAFQSLREVIPHVKKE---RRLSKIETLTLAKNYIMAL 89
          RR + NE ER R   +N+    L ++IP    E      SK   L+ A +YI  L
Sbjct: 5  RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQEL 59


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 50.3 bits (120), Expect = 3e-10
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 37 MRRLESNERERMRMHSLNDAFQSLREVIPHVKKE----RRLSKIETLTLAKNYIMAL 89
          M+R      E+ R + L  A   L  +IP   K+       SK  T+  A  YI  L
Sbjct: 1  MKRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHL 57


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 80

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 33 REKNMRRLESNERERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNV 92
          + +  +R   N  E+    S+ND    L++++   +   +L+K   L  A +YI  L + 
Sbjct: 1  QSRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA--KLNKSAVLRKAIDYIRFLQHS 58

Query: 93 ICDMRGE 99
             ++ E
Sbjct: 59 NQKLKQE 65


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 30.1 bits (68), Expect = 0.014
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 45 RERMRMHSLNDAFQSLREVIPHVKKERRLSKIETLTLAKNYIMALTNVICDMRGE 99
          R  +     ND    L++++       ++ K   L  A +YI  L  V   +R E
Sbjct: 1  RSSI-----NDKIIELKDLVMGTDA--KMHKSGVLRKAIDYIKYLQQVNHKLRQE 48


>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific
           methyltransferase SET7/9 N-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 78

 Score = 25.1 bits (55), Expect = 1.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 95  DMRGEDSPYVAPDSSTGLITSGTQGD 120
           +M GE   YV PD  T L      G+
Sbjct: 23  EMTGEKIAYVYPDERTALYGKFIDGE 48


>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase
           (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}
          Length = 431

 Score = 25.4 bits (54), Expect = 2.7
 Identities = 4/13 (30%), Positives = 6/13 (46%)

Query: 93  ICDMRGEDSPYVA 105
             +  G+DS Y  
Sbjct: 7   TFNSHGQDSSYFL 19


>d1w7ca2 d.17.2.1 (A:43-169) Lysyl oxidase PplO, domains 1 and 2
          {Yeast (Pichia pastoris) [TaxId: 4922]}
          Length = 127

 Score = 24.0 bits (52), Expect = 6.2
 Identities = 4/30 (13%), Positives = 15/30 (50%)

Query: 58 QSLREVIPHVKKERRLSKIETLTLAKNYIM 87
          + ++EV+  +     ++++       NY++
Sbjct: 25 EEVQEVLDLLHSTYNITEVTKADFFSNYVL 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 478,395
Number of extensions: 19364
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 13
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.4 bits)