Query psy11122
Match_columns 212
No_of_seqs 131 out of 381
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:35:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 4.1E-38 1.4E-42 264.2 14.1 108 82-192 2-113 (175)
2 3qrl_A Transcription initiatio 100.0 1.7E-30 5.7E-35 211.5 9.7 104 83-192 7-114 (140)
3 2wfu_B Probable insulin-like p 43.1 15 0.0005 21.6 2.0 14 1-14 4-17 (26)
4 4gpr_A Ubiquitin-conjugating e 15.2 3E+02 0.01 21.0 5.6 46 106-153 31-77 (151)
5 2h2y_A Ubiquitin-conjugating e 13.9 3.6E+02 0.012 20.3 5.7 44 106-151 47-91 (136)
6 3dah_A Ribose-phosphate pyroph 13.2 2.1E+02 0.0072 25.1 4.6 33 5-37 69-107 (319)
7 2e2c_A Ubiquitin conjugating e 12.9 3.9E+02 0.013 20.4 5.7 46 106-153 36-82 (156)
8 3teq_A Stromal interaction mol 12.7 1.1E+02 0.0037 23.3 2.2 24 2-25 25-51 (101)
9 3lrt_A Ribose-phosphate pyroph 12.6 1.5E+02 0.005 25.6 3.4 32 5-36 60-97 (286)
10 3rcz_B SUMO-conjugating enzyme 12.6 5E+02 0.017 20.2 6.8 44 107-152 43-87 (163)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=4.1e-38 Score=264.23 Aligned_cols=108 Identities=31% Similarity=0.604 Sum_probs=97.0
Q ss_pred CCceEEeEEEEccceEEcCCC----CCCCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCCCCCeEEEecCCeEEEe
Q psy11122 82 PLTQRNFRFYVGTMCKSLGSP----ACGQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITR 157 (212)
Q Consensus 82 p~~~~~k~IviGn~a~~l~~~----~~~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~pnp~rvV~~PPFeVtE 157 (212)
.+.+++|+|||||+|++|+++ .++++||+|+||||+.+++ | |++||+||+|+||||| +||+|++++|||+|+|
T Consensus 2 k~v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~e-d-is~~v~KV~F~LHpSF-~np~Rvv~~PPFevtE 78 (175)
T 3rls_A 2 KTLSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNE-D-ISYFIKKVVFKLHDTY-PNPVRSIEAPPFELTE 78 (175)
T ss_dssp CCCCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGC-C-CTTTEEEEEEECCTTS-SSCEEEECSSSEEEEE
T ss_pred CceEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCC-C-hhheEEEEEEEcCCCC-CCCcEEEeCCCCEEEE
Confidence 356789999999999999974 4578999999999998753 4 9999999999999999 5999999999999999
Q ss_pred eeEeeEeEEEEEEEecCCCCceeEEEEEEEeCCCC
Q psy11122 158 EGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVK 192 (212)
Q Consensus 158 ~GWGEF~I~I~I~Fk~~~~~p~v~i~H~L~l~~~~ 192 (212)
+|||||+|.|+|||++.+++++++|.|+|+|++..
T Consensus 79 ~GWGeF~i~I~i~F~~~~~ek~i~i~H~L~L~~~~ 113 (175)
T 3rls_A 79 TGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYA 113 (175)
T ss_dssp EESSCCEEEEEEEECGGGCCCCEEEEEECCCCC--
T ss_pred eEEeeEEEEEEEEEeCCCCCccEEEEEEEEecCCC
Confidence 99999999999999998766669999999999864
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=99.96 E-value=1.7e-30 Score=211.48 Aligned_cols=104 Identities=23% Similarity=0.474 Sum_probs=86.6
Q ss_pred CceEEeEEEEccceEEcCCC--CCCCCceeEE--EEEECCCCCCccccCeeeeEEEEeCCCCCCCCeEEEecCCeEEEee
Q psy11122 83 LTQRNFRFYVGTMCKSLGSP--ACGQSTHKWT--VYVRNCESNPENIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITRE 158 (212)
Q Consensus 83 ~~~~~k~IviGn~a~~l~~~--~~~~~tH~Wt--VyVR~~~~~~d~ls~~I~KV~F~LHpTF~pnp~rvV~~PPFeVtE~ 158 (212)
...|..+|+.+.. .++.+ .++.++|+|+ ||||+.+++ +..++||+||+|+|||||+ ||+|++++|||+|+|+
T Consensus 7 ~vkrtvr~~T~Q~--~~~~~~~~eg~~~h~WtieV~vr~~~g~-ei~~~~i~kV~f~LH~sF~-np~r~v~~pPF~v~e~ 82 (140)
T 3qrl_A 7 TVKRTIRIKTQQH--ILPEVPPVENFPVRQWSIEIVLLDDEGK-EIPATIFDKVIYHLHPTFA-NPNRTFTDPPFRIEEQ 82 (140)
T ss_dssp EEEEEEEEEEEEE--ECTTSCCBTTBCCEEEEEEEEEECTTSC-EECCTTEEEEEEECCTTSS-SCEEEECSTTCCEEEE
T ss_pred ceEEEEEEEEeee--eCCCCCCCCCCcccEeeEEEEEeCCCCC-cCchheEEEEEEEeCCCCC-CCeEEEcCCCcEEEEE
Confidence 3345556666655 67664 4567889999 999999875 3134899999999999995 9999999999999999
Q ss_pred eEeeEeEEEEEEEecCCCCceeEEEEEEEeCCCC
Q psy11122 159 GWGEFPMKITIGFVDRENNRNVELVHPVNFLHVK 192 (212)
Q Consensus 159 GWGEF~I~I~I~Fk~~~~~p~v~i~H~L~l~~~~ 192 (212)
|||||+|.|+|||++.++ + ++|.|+|+|++..
T Consensus 83 GWGeF~i~I~i~f~~~~~-~-~~i~H~L~f~~~~ 114 (140)
T 3qrl_A 83 GWGGFPLDISVFLLEKAG-E-RKIPHDLNFLQES 114 (140)
T ss_dssp ESSCCCEEEEEEEGGGTE-E-EEEEECCCSSSSE
T ss_pred EeeeEEEEEEEEEecCCC-c-EEEEEEEEeCCCC
Confidence 999999999999999864 3 8999999999864
No 3
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=43.09 E-value=15 Score=21.61 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=11.9
Q ss_pred CcchHHHHHHHHHH
Q psy11122 1 MVCFDELNETLRLF 14 (212)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (212)
+.|..+|.||+.++
T Consensus 4 ~lCG~~L~eaL~~v 17 (26)
T 2wfu_B 4 RACGPALMDMLRVA 17 (26)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHH
Confidence 47999999999875
No 4
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=15.21 E-value=3e+02 Score=20.95 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCe
Q psy11122 106 QSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPF 153 (212)
Q Consensus 106 ~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPF 153 (212)
++...|.+-+.|+.+.+- ..=+=++.+.+-++|- ..|.+.+..+-|
T Consensus 31 ~nl~~w~~~i~Gp~~tpy--egg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (151)
T 4gpr_A 31 DDIFHWTATITGPDDSPY--QGGLFFLDVHFPVDYPFKAPRVTFMTKVY 77 (151)
T ss_dssp SCTTEEEEEEECCSSSTT--TTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CCceEEEEEEeCCCCCCc--CCCEEEEEEECCCCCCCCcceeEEecCcc
Confidence 478899999998865331 2234457777778873 234544555444
No 5
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=13.90 E-value=3.6e+02 Score=20.25 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecC
Q psy11122 106 QSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKA 151 (212)
Q Consensus 106 ~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~P 151 (212)
++...|.+-+.|+.+.+= ..=+=++.+.+.++|- ..|.+.+..+
T Consensus 47 ~nl~~W~~~I~GP~~tpY--egg~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIY--ANEVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp TCTTEEEEEEECCTTSTT--TTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred ccccccEEEEECCCCCce--eCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 578899999998764321 1224456777778884 2355555554
No 6
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=13.15 E-value=2.1e+02 Score=25.12 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhh------heeehhhhhcCCCCcchh
Q psy11122 5 DELNETLRLFRALKR------SVVTQYYATNRSNRRVHP 37 (212)
Q Consensus 5 ~~~~~~~~~~~~l~~------~i~~~yya~~~~~~~~hp 37 (212)
+.|-|-+.|.|+||+ .+|+-||.-++.++..+|
T Consensus 69 d~lmeLl~~idA~k~asA~rIt~ViPY~~YaRQDr~~~~ 107 (319)
T 3dah_A 69 DNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRS 107 (319)
T ss_dssp HHHHHHHHHHHHHHHTTBSEEEEEESSCTTTTCCSCCTT
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEccCccccccccccCC
Confidence 578899999999976 578899999998875555
No 7
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=12.91 E-value=3.9e+02 Score=20.43 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=29.5
Q ss_pred CCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCe
Q psy11122 106 QSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPF 153 (212)
Q Consensus 106 ~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPF 153 (212)
++...|.+-+.|+.+.+= - .=+=++.+.+.++|- ..|.+.+..+-|
T Consensus 36 ~~l~~w~~~i~Gp~~tpy-e-gg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (156)
T 2e2c_A 36 DNLFKWVATLDGPKDTVY-E-SLKYKLTLEFPSDYPYKPPVVKFTTPCW 82 (156)
T ss_dssp SCTTEEEEEEECCTTSTT-T-TCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CCccEEEEEEECCCCCCc-C-CcEEEEEEECCCCCCCCCCEEEEeCCcc
Confidence 478899999998765332 1 223467777888884 235555655544
No 8
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=12.73 E-value=1.1e+02 Score=23.25 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHHhhh---heeehh
Q psy11122 2 VCFDELNETLRLFRALKR---SVVTQY 25 (212)
Q Consensus 2 ~~~~~~~~~~~~~~~l~~---~i~~~y 25 (212)
-|..+|.+|+...+|||+ +|+-++
T Consensus 25 ~aekql~~A~e~~eKl~KKrsS~~gs~ 51 (101)
T 3teq_A 25 NAEKQLMVAKEGAEKIKKKRNTLFGTF 51 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhchheee
Confidence 367899999999999974 444443
No 9
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=12.61 E-value=1.5e+02 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhh------eeehhhhhcCCCCcch
Q psy11122 5 DELNETLRLFRALKRS------VVTQYYATNRSNRRVH 36 (212)
Q Consensus 5 ~~~~~~~~~~~~l~~~------i~~~yya~~~~~~~~h 36 (212)
+.|-|-+.|.|.||+. +|+-||.-++.++..+
T Consensus 60 d~lmeLl~~ida~k~~~A~~it~ViPY~~YaRQDr~~~ 97 (286)
T 3lrt_A 60 AEVMEMILTLSAIQDYRTKSVNIIAPYYGYARQHQRYK 97 (286)
T ss_dssp HHHHHHHHHHHHGGGSCCSEEEEEESSCTTTTCCSCSS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecCcccccCcccCC
Confidence 6789999999999986 7899999999875433
No 10
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=12.56 E-value=5e+02 Score=20.17 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=28.0
Q ss_pred CceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCC
Q psy11122 107 STHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAP 152 (212)
Q Consensus 107 ~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PP 152 (212)
+...|.+-+.|+.+.+ -..-+=++.+.+-++|- ..|.+.+..+.
T Consensus 43 nl~~W~~~I~Gp~~Tp--yegg~f~l~i~fp~~YP~~pP~v~F~t~i 87 (163)
T 3rcz_B 43 DLMNWKVGIPGKPKTS--WEGGLYKLTMAFPEEYPTRPPKCRFTPPL 87 (163)
T ss_dssp EEEEEEEEEECCTTST--TTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred CccEEEEEEECCCCCC--cCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence 8999999999887533 22334557778888884 23444444433
Done!