Query psy11122
Match_columns 212
No_of_seqs 131 out of 381
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 18:35:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11122.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11122hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e43a1 b.71.1.1 (A:394-483) B 41.3 3.3 0.00024 29.2 0.5 14 152-165 66-79 (90)
2 d2uyza1 d.20.1.1 (A:3-158) Ubi 40.4 40 0.0029 24.5 6.8 60 93-154 21-81 (156)
3 d2d3na1 b.71.1.1 (A:399-485) B 38.9 3.8 0.00027 28.8 0.5 14 152-165 63-76 (87)
4 d1ud2a1 b.71.1.1 (A:391-480) B 36.4 4.3 0.00032 28.6 0.5 14 152-165 66-79 (90)
5 d1aiea_ a.53.1.1 (A:) p53 tetr 32.4 13 0.00095 21.1 2.1 15 3-17 15-29 (31)
6 d2f4za1 d.20.1.1 (A:32-192) Hy 29.6 62 0.0045 23.6 6.4 47 105-153 40-87 (161)
7 d2e2ca_ d.20.1.1 (A:) Ubiquiti 28.4 72 0.0052 23.0 6.5 56 105-162 35-91 (156)
8 d2bepa1 d.20.1.1 (A:1-154) Ubi 27.8 83 0.006 22.4 6.7 48 105-154 33-81 (154)
9 d1jatb_ d.20.1.1 (B:) Ubiquiti 27.5 98 0.0071 21.9 7.1 46 104-151 33-79 (136)
10 d1yrva1 d.20.1.1 (A:1-148) Ubi 26.0 77 0.0056 22.6 6.2 35 105-141 30-64 (148)
11 d1fzya_ d.20.1.1 (A:) Ubiquiti 25.2 1E+02 0.0073 21.7 6.7 47 105-153 28-75 (149)
12 d1ayza_ d.20.1.1 (A:) Ubiquiti 24.0 91 0.0066 21.9 6.3 47 106-154 30-77 (153)
13 d1j7db_ d.20.1.1 (B:) Ubiquiti 21.4 1.3E+02 0.0091 21.2 6.6 48 105-154 28-76 (149)
No 1
>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus licheniformis [TaxId: 1402]}
Probab=41.25 E-value=3.3 Score=29.23 Aligned_cols=14 Identities=57% Similarity=1.246 Sum_probs=11.7
Q ss_pred CeEEEeeeEeeEeE
Q psy11122 152 PFKITREGWGEFPM 165 (212)
Q Consensus 152 PFeVtE~GWGEF~I 165 (212)
+=.|.+.|||+|.+
T Consensus 66 ~V~id~~G~g~F~v 79 (90)
T d1e43a1 66 PVVINSEGWGEFHV 79 (90)
T ss_dssp CEECCTTSEEEEEE
T ss_pred EEEECCCceEEEEE
Confidence 45678999999987
No 2
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}
Probab=40.44 E-value=40 Score=24.47 Aligned_cols=60 Identities=10% Similarity=0.218 Sum_probs=37.1
Q ss_pred ccceEEcCCCCCCCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCeE
Q psy11122 93 GTMCKSLGSPACGQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPFK 154 (212)
Q Consensus 93 Gn~a~~l~~~~~~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPFe 154 (212)
|-.+.....+.++.+..+|.+-+.|..+.+= -+..+ ++.+.+.++|- ..|.+.+..+.|.
T Consensus 21 g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY-~gg~f-~~~i~fp~~YP~~pP~v~f~t~i~H 81 (156)
T d2uyza1 21 GFVAVPTKNPDGTMNLMNWECAIPGKKGTPW-EGGLF-KLRMLFKDDYPSSPPKCKFEPPLFH 81 (156)
T ss_dssp TCEEEEEECTTSCEEEEEEEEEEECCTTSTT-TTCEE-EEEEECCTTTTSSCCEEEESSCCCS
T ss_pred CeEEEecCCCCCCCcccEEEEEEEcCCCCCc-cCCEE-EEEEeCCccccCCCceeeecccccc
Confidence 4455544333445689999999998875431 22233 78888888884 2355555555443
No 3
>d2d3na1 b.71.1.1 (A:399-485) Bacterial alpha-Amylase {Bacillus sp. 707 [TaxId: 1416]}
Probab=38.91 E-value=3.8 Score=28.76 Aligned_cols=14 Identities=36% Similarity=1.051 Sum_probs=11.3
Q ss_pred CeEEEeeeEeeEeE
Q psy11122 152 PFKITREGWGEFPM 165 (212)
Q Consensus 152 PFeVtE~GWGEF~I 165 (212)
+=.|.+.|||+|.+
T Consensus 63 ~V~id~~G~g~F~v 76 (87)
T d2d3na1 63 TVTINADGWGNFSV 76 (87)
T ss_dssp EEECCTTSEEEEEE
T ss_pred EEEECCCceEEEEE
Confidence 33577999999987
No 4
>d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=36.43 E-value=4.3 Score=28.58 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=11.2
Q ss_pred CeEEEeeeEeeEeE
Q psy11122 152 PFKITREGWGEFPM 165 (212)
Q Consensus 152 PFeVtE~GWGEF~I 165 (212)
+=.|.+.|||+|.+
T Consensus 66 ~V~id~~G~g~F~V 79 (90)
T d1ud2a1 66 SVTINGDGWGEFFT 79 (90)
T ss_dssp EEECCTTSEEEEEE
T ss_pred EEEECCCceEEEEE
Confidence 33567999999987
No 5
>d1aiea_ a.53.1.1 (A:) p53 tetramerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.42 E-value=13 Score=21.14 Aligned_cols=15 Identities=53% Similarity=0.600 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHHHh
Q psy11122 3 CFDELNETLRLFRAL 17 (212)
Q Consensus 3 ~~~~~~~~~~~~~~l 17 (212)
-|.+||||+.+-|+.
T Consensus 15 mfrelnealelkdaq 29 (31)
T d1aiea_ 15 MFRELNEALELKDAQ 29 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcc
Confidence 378999999988763
No 6
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}
Probab=29.63 E-value=62 Score=23.56 Aligned_cols=47 Identities=13% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCe
Q psy11122 105 GQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPF 153 (212)
Q Consensus 105 ~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPF 153 (212)
+++..+|.+.+.|+.+.+= -+..+ ++.+.+.+.|- ..|.+.+..+-|
T Consensus 40 ~~nl~~W~~~I~Gp~~TpY-~gg~f-~~~i~fp~~YP~~pP~V~F~t~i~ 87 (161)
T d2f4za1 40 GGDIHRWRGFIAGPLGTPY-EGGHF-TLDIVIPPDYPYNPPKMKFVTKIW 87 (161)
T ss_dssp TTEEEEEEEEEECCTTSTT-TTCEE-EEEEECCTTTTTSCCEEEESSCCC
T ss_pred CCccceeEEEEeCCCCCcc-CCCEE-EEEEeccCCCCCCCcEEEecCCCC
Confidence 4579999999999875432 22333 88888899994 234544544444
No 7
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}
Probab=28.38 E-value=72 Score=22.98 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=36.1
Q ss_pred CCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCeEEEeeeEee
Q psy11122 105 GQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPFKITREGWGE 162 (212)
Q Consensus 105 ~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPFeVtE~GWGE 162 (212)
+++.+.|.+-+.|+.+.+= ..-+=++.+.+-+.|- ..|.+.+..+.|.-.-...|.
T Consensus 35 ~~dl~~W~~~i~Gp~~t~y--egg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~ 91 (156)
T d2e2ca_ 35 GDNLFKWVATLDGPKDTVY--ESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91 (156)
T ss_dssp SSCTTEEEEEEECCTTSTT--TTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred CCcccEEEEEEEcCCcccc--CCCEEEEEEEecCCCCCCCceeeccccCcCCCCCCCCC
Confidence 3578999999998765332 2234478888888885 346666667766633333343
No 8
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.77 E-value=83 Score=22.38 Aligned_cols=48 Identities=8% Similarity=0.038 Sum_probs=31.0
Q ss_pred CCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCeE
Q psy11122 105 GQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPFK 154 (212)
Q Consensus 105 ~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPFe 154 (212)
+++..+|.+-+.|+.+.+= ..-+=++.+.+.+.|. ..|.+.+..+.|.
T Consensus 33 ~~n~~~w~~~i~gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 81 (154)
T d2bepa1 33 DENFTELRGEIAGPPDTPY--EGGRYQLEIKIPETYPFNPPKVRFITKIWH 81 (154)
T ss_dssp SSSSSEEEEEEECCTTSTT--TTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred CCChhheEeeEecCccccc--cCCeeEEEEeccccccCCCCcceecccCCC
Confidence 4578899999998765332 2223378999999984 2345555555444
No 9
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Probab=27.52 E-value=98 Score=21.94 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=29.8
Q ss_pred CCCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecC
Q psy11122 104 CGQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKA 151 (212)
Q Consensus 104 ~~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~P 151 (212)
++...++|.+.+.|..+.+= ..-+=++.+.+-++|- ..|.+.+..+
T Consensus 33 dd~~l~~W~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~PP~v~f~t~ 79 (136)
T d1jatb_ 33 DDITMTKWNGTILGPPHSNH--ENRIYSLSIDCGPNYPDSPPKVTFISK 79 (136)
T ss_dssp TCTTCCEEEEEEECCSSSTT--TTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred CCCceeEEEEEEECCCCChh--hcCEEEEEEEecCCCCCCCCEEEEecc
Confidence 45689999999998765332 2233478889999994 2244444443
No 10
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}
Probab=25.97 E-value=77 Score=22.64 Aligned_cols=35 Identities=9% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC
Q psy11122 105 GQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA 141 (212)
Q Consensus 105 ~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~ 141 (212)
+++.+.|.+-+.|+.+.+= ..-+=++.+.+.++|-
T Consensus 30 ~~n~~~W~~~i~Gp~~t~y--egg~f~~~i~fp~~YP 64 (148)
T d1yrva1 30 SEDMMEWEVEIEGLQNSVW--QGLVFQLTIHFTSEYN 64 (148)
T ss_dssp STTSCEEEEEEECCTTSTT--TTCEEEEEEECCTTBT
T ss_pred CCcccEEEEEEEeCCCCcc--CCCceEEEEEeccccc
Confidence 3578999999998765332 2223388888899984
No 11
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Probab=25.18 E-value=1e+02 Score=21.67 Aligned_cols=47 Identities=9% Similarity=0.004 Sum_probs=30.5
Q ss_pred CCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCe
Q psy11122 105 GQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPF 153 (212)
Q Consensus 105 ~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPF 153 (212)
+++.++|.+-+.|+.+.+ -..-+=++.+.+.+.|- ..|.+.+..+.|
T Consensus 28 ~~~~~~w~~~I~gp~~t~--y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 75 (149)
T d1fzya_ 28 ESDIHHLKGTFLGPPGTP--YEGGKFVVDIEVPMEYPFKPPKMQFDTKVY 75 (149)
T ss_dssp SSCSSEEEEEEECCTTST--TTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CCchhEEEEEEEcCCCCC--CCCCceeEEEEecCCcccCCcEEEecCCCc
Confidence 457899999999876533 22345579999999994 224444444433
No 12
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}
Probab=24.00 E-value=91 Score=21.87 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=33.1
Q ss_pred CCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCeE
Q psy11122 106 QSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPFK 154 (212)
Q Consensus 106 ~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPFe 154 (212)
++...|.+.+.|+.+.+- -+ -+=++.+.+.++|. ..|.+.+..+.|.
T Consensus 30 ~n~~~w~~~i~gp~~tpy-~g-g~f~~~i~~p~~YP~~pP~v~f~t~i~H 77 (153)
T d1ayza_ 30 DNVMVWNAMIIGPADTPY-ED-GTFRLLLEFDEEYPNKPPHVKFLSEMFH 77 (153)
T ss_dssp TEEEEEEEEEECCTTSTT-TT-CEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CcHHhHhheeeCCCCCcc-CC-CEEEEEEecCccccCCCCeeeeccCCCc
Confidence 578999999998775432 22 23378888999974 3467677777776
No 13
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}
Probab=21.37 E-value=1.3e+02 Score=21.19 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=31.4
Q ss_pred CCCceeEEEEEECCCCCCccccCeeeeEEEEeCCCCC-CCCeEEEecCCeE
Q psy11122 105 GQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYA-PNNVVIVRKAPFK 154 (212)
Q Consensus 105 ~~~tH~WtVyVR~~~~~~d~ls~~I~KV~F~LHpTF~-pnp~rvV~~PPFe 154 (212)
+++...|.+-+.|+.+.+= -.. +=++.+.+.+.|- ..|.+.+..+.|.
T Consensus 28 ~~n~~~w~~~i~gp~~tpy-~gg-~f~~~i~fp~~YP~~pP~v~f~t~i~H 76 (149)
T d1j7db_ 28 ESNARYFHVVIAGPQDSPF-EGG-TFKLELFLPEEYPMAAPKVRFMTKIYH 76 (149)
T ss_dssp SSCTTEEEEEEECCTTSTT-TTC-EEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred CCcccEeeeEEECCccccc-CCC-EEEEEEecCCcccCCCceeeecCCCCC
Confidence 3578889999998765332 222 3388888888884 2456566666554
Done!