RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11122
         (212 letters)



>gnl|CDD|190614 pfam03366, YEATS, YEATS family.  We have named this family the
           YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF
           small subunit'. This family also contains the GAS41
           protein. All these proteins are thought to have a
           transcription stimulatory activity.
          Length = 84

 Score = 86.1 bits (214), Expect = 3e-22
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 108 THKWTVYVR--NCESNPENIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 165
           THKWTV+VR  + E +    ++    V F LHES+ PN V  V K PF++T  GWGEF +
Sbjct: 1   THKWTVFVRGLDNEGDLSYFIKK---VTFKLHESF-PNPVRTVTKPPFEVTETGWGEFEI 56

Query: 166 KITIGFVDRENNRNVELVHPVNF 188
            I I FVD  N + V + H +  
Sbjct: 57  PIKIYFVD-SNEKPVTIQHDLKL 78


>gnl|CDD|227366 COG5033, TFG3, Transcription initiation factor IIF, auxiliary
           subunit [Transcription].
          Length = 225

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 108 THKWTVYVRNCESNPENIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKI 167
           TH W V+VR      E+I   +  V F LH ++  N    +   PF+I   GWGEF ++I
Sbjct: 35  THIWLVFVRA--PGKEDIATIVKKVIFKLHPTF-SNPTRTIESPPFEIKETGWGEFDIQI 91

Query: 168 TIGFVDRENNRNVELVH 184
            I F ++   + +    
Sbjct: 92  KIFFAEKAGEKTIHFYL 108


>gnl|CDD|221022 pfam11195, DUF2829, Protein of unknown function (DUF2829).  This is
           a uncharacterized family of proteins found in bacteria
           and bacteriphages.
          Length = 75

 Score = 30.1 bits (68), Expect = 0.17
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 150 KAPFKITREGWGEFPMKITIGFVDRENNRNVE 181
           KA  KI+R+GW    M + +   D+    N++
Sbjct: 11  KAGKKISRKGWNGKEMFVKLVDDDKFEGTNLD 42


>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain.  This
          domain is found to the N-terminus of pfam03473. The
          function of this domain is unknown, however it is
          predicted to adopt a beta barrel fold.
          Length = 118

 Score = 29.2 bits (66), Expect = 0.70
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 32 NRRVHPAIVKAEEEMREDGGVEVKVE--PGLELPSRKSKRKKVPRLV 76
            R HP +V     + EDGG+ +     P L +P   +K + V  LV
Sbjct: 47 TARRHPRLVLIRTTLDEDGGLTLTAPGMPPLSVPLAANKFQLVGVLV 93


>gnl|CDD|204344 pfam09929, DUF2161, Uncharacterized conserved protein (DUF2161). 
          This domain, found in various hypothetical prokaryotic
          proteins, has no known function.
          Length = 118

 Score = 28.0 bits (63), Expect = 1.8
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 48 EDGGVEVKVEPGLELPSRKSKRKKVPRLV 76
          +DG VEV  +PG   P RK+K+K+  RL+
Sbjct: 7  QDGLVEVHCDPGPYAP-RKNKKKRS-RLL 33


>gnl|CDD|205728 pfam13550, Phage-tail_3, Putative phage tail protein.  This
           putative domain is found in the large gene transfer
           agent protein. These produce defective phage like
           particles. This domain is similar to other phage-tail
           protein families.
          Length = 164

 Score = 27.2 bits (61), Expect = 4.0
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 151 APFKITREGWGEFPMKITIGFVDRENN 177
            P ++TR    E P ++ + ++D  N+
Sbjct: 53  EPLELTRAAEAELPNEVRVRYIDPAND 79


>gnl|CDD|204194 pfam09304, Cortex-I_coil, Cortexillin I, coiled coil.  Members of
          this family are predominantly found in the
          actin-bundling protein Cortexillin I from Dictyostelium
          discoideum. They adopt a structure consisting of an
          18-heptad-repeat alpha-helical coiled-coil, and are a
          prerequisite for the assembly of Cortexillin I.
          Length = 107

 Score = 26.8 bits (59), Expect = 4.7
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 13/67 (19%)

Query: 5  DELNETLRLFRALKRSVVTQYYATNRSNRRVHPAIVKAEEEMREDGGVEVKVEPGLELPS 64
          D+L   L    A K              +R+     K +E ++    +E++    +EL S
Sbjct: 40 DQLRSLLASLEAQKAER----------EQRLRELQAKIDELLK---NLELEKLAKMELES 86

Query: 65 RKSKRKK 71
          R SK +K
Sbjct: 87 RLSKTEK 93


>gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type
           III, beta isoform, catalytic domain; The PI4K catalytic
           domain family is part of a larger superfamily that
           includes the catalytic domains of other kinases such as
           the typical serine/threonine/tyrosine protein kinases
           (PKs), aminoglycoside phosphotransferase, choline
           kinase, and RIO kinases. PI4Ks catalyze the transfer of
           the gamma-phosphoryl group from ATP to the 4-hydroxyl of
           the inositol ring of D-myo-phosphatidylinositol (PtdIns)
           to generate PtdIns(4)P, the major precursor in the
           synthesis of other phosphoinositides including
           PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two
           isoforms of type III PI4K, alpha and beta, exist in most
           eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is
           a 110 kDa protein that is localized to the Golgi and the
           nucleus. It is required for maintaining the structural
           integrity of the Golgi complex (GC), and is a key
           regulator of protein transport from the GC to the plasma
           membrane. PI4KIIIbeta also functions in the genesis,
           transport, and exocytosis of synaptic vesicles. The
           Drosophila PI4KIIIbeta is essential for cytokinesis
           during spermatogenesis.
          Length = 293

 Score = 27.5 bits (62), Expect = 5.3
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)

Query: 128 HIAHVK--FMLHESYAPNNVVIVRKAPFKITRE 158
           HI H+   FML  S +P NV     APFK+T+E
Sbjct: 160 HIIHIDFGFML--SNSPGNVG-FETAPFKLTQE 189


>gnl|CDD|143427 cd07109, ALDH_AAS00426, Uncharacterized Saccharopolyspora spinosa
           aldehyde dehydrogenase (AAS00426)-like.  Uncharacterized
           aldehyde dehydrogenase of Saccharopolyspora spinosa
           (AAS00426) and other similar sequences, are present in
           this CD.
          Length = 454

 Score = 26.8 bits (60), Expect = 8.4
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 16/62 (25%)

Query: 78  DTGRPLTQ---------RNFRFYVGTMCKSLG-SPACGQSTHKWTVYVRNCESNPENIVR 127
           DTG+PLTQ         R F +Y G   K  G +   G     +TV        P  +  
Sbjct: 69  DTGKPLTQARADVEAAARYFEYYGGAADKLHGETIPLGPGYFVYTVRE------PHGVTG 122

Query: 128 HI 129
           HI
Sbjct: 123 HI 124


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0748    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,717,356
Number of extensions: 982199
Number of successful extensions: 826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 824
Number of HSP's successfully gapped: 16
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)