RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11122
         (212 letters)



>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription;
           1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
          Length = 175

 Score = 83.3 bits (205), Expect = 2e-20
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 89  RFYVGTMCKSLGSP----ACGQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESYAPNN 144
               G   K +GS     A  + TH WT++VR      E+I   I  V F LH++Y PN 
Sbjct: 9   PIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRG--PQNEDISYFIKKVVFKLHDTY-PNP 65

Query: 145 VVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPI 204
           V  +   PF++T  GWGEF + I + FV+  N + +   H +      + +P        
Sbjct: 66  VRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQ 125

Query: 205 DVMLSLSE 212
           +     S+
Sbjct: 126 NTTDHNSK 133


>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG
           fold, nucleus, nuclear protein; HET: PGE; 1.70A
           {Saccharomyces cerevisiae} PDB: 2l7e_A
          Length = 140

 Score = 79.2 bits (195), Expect = 4e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 7/126 (5%)

Query: 89  RFYVGTMCKSLG--SPACGQSTHKWTVYVRNCESNPENIVRH-IAHVKFMLHESYAPNNV 145
              + T    L    P       +W++ +   +   + I       V + LH ++  N  
Sbjct: 11  TIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTF-ANPN 69

Query: 146 VIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNF-LHVKSIIPIISLETPI 204
                 PF+I  +GWG FP+ I++  ++       ++ H +NF      +  +I +    
Sbjct: 70  RTFTDPPFRIEEQGWGGFPLDISVFLLE--KAGERKIPHDLNFLQESYEVEHVIQIPLNK 127

Query: 205 DVMLSL 210
            ++   
Sbjct: 128 PLLTEE 133


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.6 bits (84), Expect = 0.005
 Identities = 51/258 (19%), Positives = 76/258 (29%), Gaps = 96/258 (37%)

Query: 2   VCFDELNETLRLFRALKRSVVTQYYATNRSNRRVHPAIVKAEEEMREDGGVEVKVEP--- 58
             F+EL       R L        Y T      V   I  + E + E     +  E    
Sbjct: 168 DYFEEL-------RDL--------YQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFT 210

Query: 59  -GLELPS--RKSKRKKVPRLVPDTGR--------P---LTQRNFRFYVGTMCKSLG-SPA 103
            GL +            P   PD           P   + Q     YV    K LG +P 
Sbjct: 211 QGLNILEWLEN------PSNTPDKDYLLSIPISCPLIGVIQ--LAHYV-VTAKLLGFTPG 261

Query: 104 ------CGQSTHKWTVYVRNC-------ESNPENIVRHIAHVKFML----HESYAPNNVV 146
                  G + H   +            ES   ++ + I  V F +    +E+Y PN  +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYEAY-PNTSL 319

Query: 147 IVRKAPFKITREGW--GEF---PM--------KITIGFVDREN-----NRNVE--LVH-P 185
                P  I  +     E    PM        +    +V++ N      + VE  LV+  
Sbjct: 320 -----PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374

Query: 186 VNFLHVKSII--PIISLE 201
            N      ++  P  SL 
Sbjct: 375 KNL-----VVSGPPQSLY 387



 Score = 27.7 bits (61), Expect = 3.8
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 38/82 (46%)

Query: 164  PMKITIGF--------VDRENNRNVELVHPVNF-------------------------LH 190
            P ++   F        V+R   R   LV  VN+                         + 
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873

Query: 191  VKSIIPIISLETPIDVMLSLSE 212
            ++  I II L+      LSL E
Sbjct: 1874 LQK-IDIIELQ----KSLSLEE 1890


>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
           helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
           2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
          Length = 1038

 Score = 28.7 bits (64), Expect = 1.5
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 24  QYYATNRSNRRVHPAIVKAEEEMREDGGV 52
           Q  AT R   ++  +         E GG 
Sbjct: 276 QIAATERILWKIKSSFTAKNWSKPESGGY 304


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.8 bits (58), Expect = 4.1
 Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 13/28 (46%)

Query: 138 ES----YAPNNVVIVRKAP---FKITRE 158
           ++    YA ++      AP    K T E
Sbjct: 26  QASLKLYADDS------APALAIKATME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,216,371
Number of extensions: 186154
Number of successful extensions: 355
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 11
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.5 bits)