RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11122
         (212 letters)



>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 401

 Score = 26.2 bits (56), Expect = 3.3
 Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 16/116 (13%)

Query: 34  RVHPAIVKAEEEMREDGGVEVKVEPG--LELPSRKSKRKKVPRLVPDTGRPLTQR----- 86
           RV PAI  A   +  +G     + PG   ++    S               L  R     
Sbjct: 26  RVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCG------NRALFSLVDRVAAAR 79

Query: 87  --NFRFYVGTMCKSLGSPACGQSTHKWTVYVRNCESNPENIVRHIAHVKFMLHESY 140
                  +G +C    +    +    W + + +  +         +    +   + 
Sbjct: 80  GAKPDLILGPVC-EYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAP 134


>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus
           licheniformis [TaxId: 1402]}
          Length = 90

 Score = 23.8 bits (52), Expect = 7.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 149 RKAPFKITREGWGEFP 164
           R  P  I  EGWGEF 
Sbjct: 63  RSEPVVINSEGWGEFH 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,598
Number of extensions: 36642
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)