RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11123
(285 letters)
>gnl|CDD|190614 pfam03366, YEATS, YEATS family. We have named this family the
YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF
small subunit'. This family also contains the GAS41
protein. All these proteins are thought to have a
transcription stimulatory activity.
Length = 84
Score = 87.2 bits (217), Expect = 5e-22
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 150 THKWTVYVR--NCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPM 207
THKWTV+VR + E + ++ V F LHES+ PN V V K PF++T GWGEF +
Sbjct: 1 THKWTVFVRGLDNEGDLSYFIKK---VTFKLHESF-PNPVRTVTKPPFEVTETGWGEFEI 56
Query: 208 KITIGFVDRENNRNVELVHPVNF 230
I I FVD N + V + H +
Sbjct: 57 PIKIYFVD-SNEKPVTIQHDLKL 78
>gnl|CDD|227366 COG5033, TFG3, Transcription initiation factor IIF, auxiliary
subunit [Transcription].
Length = 225
Score = 56.4 bits (136), Expect = 2e-09
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 150 THKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKI 209
TH W V+VR E I + V F LH ++ N + PF+I GWGEF ++I
Sbjct: 35 THIWLVFVRA--PGKEDIATIVKKVIFKLHPTF-SNPTRTIESPPFEIKETGWGEFDIQI 91
Query: 210 TIGFVDRENNRNVELVH 226
I F ++ + +
Sbjct: 92 KIFFAEKAGEKTIHFYL 108
>gnl|CDD|221022 pfam11195, DUF2829, Protein of unknown function (DUF2829). This is
a uncharacterized family of proteins found in bacteria
and bacteriphages.
Length = 75
Score = 30.1 bits (68), Expect = 0.27
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 192 KAPFKITREGWGEFPMKITIGFVDRENNRNVE 223
KA KI+R+GW M + + D+ N++
Sbjct: 11 KAGKKISRKGWNGKEMFVKLVDDDKFEGTNLD 42
>gnl|CDD|226494 COG4006, COG4006, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 278
Score = 30.2 bits (68), Expect = 0.95
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 22 KVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVV----TQYYATNRSNRRV 77
R L ++ + + R S ELN RSV Y+T+ +N R+
Sbjct: 41 LSRGSELWKVLEK--LVSYAPFRASAELNTLFISAERKDRSVSEIDEAILYSTDTANGRL 98
Query: 78 HPTIVKAEEEMREDGGVEVKVEP 100
+VK + +G + +
Sbjct: 99 SAEVVK--GYLEREGHARTESKQ 119
>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain
is found to the N-terminus of pfam03473. The function of
this domain is unknown, however it is predicted to adopt
a beta barrel fold.
Length = 118
Score = 28.1 bits (63), Expect = 2.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 74 NRRVHPTIVKAEEEMREDGGVEVKVE--PGLELPSRKSKRKKVPRLV 118
R HP +V + EDGG+ + P L +P +K + V LV
Sbjct: 47 TARRHPRLVLIRTTLDEDGGLTLTAPGMPPLSVPLAANKFQLVGVLV 93
>gnl|CDD|218362 pfam04984, Phage_sheath_1, Phage tail sheath protein. This family
includes a variety of phage tail sheath proteins.
Length = 437
Score = 29.3 bits (66), Expect = 2.6
Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 27/133 (20%)
Query: 9 DVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYY 68
D+TT S T D+ +FL+ + +R D L + RS Y
Sbjct: 324 DITTLTSFTGDKDP-------------SFLKIRVIRTLDYLANDI-------RSTFKWKY 363
Query: 69 ATNRSNRRVHPTIVKAE-----EEMREDGGVE-VKVEPGLELPSRKSKRKKV-PRLVPDT 121
+ N ++VK+E E++ G +E V+ L + + + + +V +
Sbjct: 364 PGKKLNNDDGRSLVKSELNAYLRELQRLGAIENFDVKCDLTVNRQGNDKDRVVVNIDVTP 423
Query: 122 GRPLTQRNFRFYV 134
+ + F V
Sbjct: 424 VNSMEKIYFTVEV 436
>gnl|CDD|204344 pfam09929, DUF2161, Uncharacterized conserved protein (DUF2161).
This domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 118
Score = 28.0 bits (63), Expect = 2.6
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 90 EDGGVEVKVEPGLELPSRKSKRKKVPRLV 118
+DG VEV +PG P RK+K+K+ RL+
Sbjct: 7 QDGLVEVHCDPGPYAP-RKNKKKRS-RLL 33
>gnl|CDD|219273 pfam07028, DUF1319, Protein of unknown function (DUF1319). This
family contains a number of viral proteins of unknown
function approximately 200 residues long. Family members
seem to be restricted to badnaviruses.
Length = 119
Score = 27.7 bits (62), Expect = 3.1
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 18 LDESKVRDYLLREISTETAFLESQAVRLSDELNETL 53
L + V + L+ IS + +E Q L++EL + +
Sbjct: 82 LSKEDVEE-LVLRISEQPKLIEKQTEALTEELKKKV 116
>gnl|CDD|237972 PRK15483, PRK15483, type III restriction-modification system StyLTI
enzyme res; Provisional.
Length = 986
Score = 28.8 bits (65), Expect = 4.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 34 ET-AFLESQAVRLSDE--LNETLRLFRALKRSVVTQYYATNRSNRRVHPTIVKAEEE 87
ET A E++ +R+ +E ++ + F L + + T S + V I E
Sbjct: 929 ETKAVDEAENLRVGEERKIDAAKKFFDMLSEDGINVVFKTQTSAKAVASLINGLIEG 985
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 28.3 bits (63), Expect = 5.1
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 24 RDYLLREISTETAFLESQAVRLSDELNETLRL---FRALKRSVVTQYYAT----NRSNRR 76
RD LLR+I ++ FLE+Q + ++ +L L FRA Q+ + +RS
Sbjct: 565 RDALLRQIEIDSKFLEAQRI-----MDYSLLLGVHFRA------PQHLRSLLPYSRSITA 613
Query: 77 VHPTIVKAEEEMRED 91
+V AEE+ ED
Sbjct: 614 DGLEVV-AEEDTIED 627
>gnl|CDD|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.
Length = 911
Score = 28.6 bits (65), Expect = 5.1
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 18 LDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKR 61
L E++ + +LLRE+++ L S+ ++ L F A +R
Sbjct: 435 LSEAEKQAFLLRELNSRRP-LIPPNWEYSELTSKELAEFLAARR 477
>gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 28.3 bits (63), Expect = 5.7
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 79 PTIVKAEEEMREDGGVEVKVEP-----GLELPSRKSKRKKVPRL 117
TI EE + + GV++ + + PS K+ RK++P++
Sbjct: 637 LTIESVEEAIEKKLGVKIDRKGTVLYLKPKTPSYKALRKRIPKI 680
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 28.1 bits (63), Expect = 6.4
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 12/116 (10%)
Query: 9 DVTTHPSPTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKRSVVTQYY 68
D E ++ + + E + E V L E E R+F ALK+ ++
Sbjct: 92 DGEPELEEEPAEGELPNVM-----EEAFYFEQAGVGLGRE--EAYRIFLALKQLAESKPL 144
Query: 69 ATNRSNRRVHPT-----IVKAEEEMREDGGVEVKVEPGLELPSRKSKRKKVPRLVP 119
+T R ++ T + + E E+ E +V E + + ++ P VP
Sbjct: 145 STVRFWGKILGTQKDYYVAEVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVP 200
>gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type
III, beta isoform, catalytic domain; The PI4K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI4Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 4-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
to generate PtdIns(4)P, the major precursor in the
synthesis of other phosphoinositides including
PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two
isoforms of type III PI4K, alpha and beta, exist in most
eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is
a 110 kDa protein that is localized to the Golgi and the
nucleus. It is required for maintaining the structural
integrity of the Golgi complex (GC), and is a key
regulator of protein transport from the GC to the plasma
membrane. PI4KIIIbeta also functions in the genesis,
transport, and exocytosis of synaptic vesicles. The
Drosophila PI4KIIIbeta is essential for cytokinesis
during spermatogenesis.
Length = 293
Score = 27.5 bits (62), Expect = 8.5
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 170 HIAHVK--FMLHESYAPNNVVIVRKAPFKITRE 200
HI H+ FML S +P NV APFK+T+E
Sbjct: 160 HIIHIDFGFML--SNSPGNVG-FETAPFKLTQE 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,574,561
Number of extensions: 1385400
Number of successful extensions: 1274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1272
Number of HSP's successfully gapped: 24
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)