RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11123
(285 letters)
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription;
1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Length = 175
Score = 85.2 bits (210), Expect = 2e-20
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 131 RFYVGTMCKALGSP----ACGQSTHKWTVYVRNCESNPESIVRHIAHVKFMLHESYAPNN 186
G K +GS A + TH WT++VR ++ S I V F LH++Y PN
Sbjct: 9 PIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYF--IKKVVFKLHDTY-PNP 65
Query: 187 VVIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNFLHVKSIIPIISLETPI 246
V + PF++T GWGEF + I + FV+ N + + H + + +P
Sbjct: 66 VRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQ 125
Query: 247 D 247
+
Sbjct: 126 N 126
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG
fold, nucleus, nuclear protein; HET: PGE; 1.70A
{Saccharomyces cerevisiae} PDB: 2l7e_A
Length = 140
Score = 81.9 bits (202), Expect = 1e-19
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 7/126 (5%)
Query: 131 RFYVGTMCKALG--SPACGQSTHKWTVYVRNCESNPESIVRH-IAHVKFMLHESYAPNNV 187
+ T L P +W++ + + + I V + LH ++ N
Sbjct: 11 TIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTF-ANPN 69
Query: 188 VIVRKAPFKITREGWGEFPMKITIGFVDRENNRNVELVHPVNF-LHVKSIIPIISLETPI 246
PF+I +GWG FP+ I++ ++ ++ H +NF + +I +
Sbjct: 70 RTFTDPPFRIEEQGWGGFPLDISVFLLE--KAGERKIPHDLNFLQESYEVEHVIQIPLNK 127
Query: 247 DVVLSL 252
++
Sbjct: 128 PLLTEE 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 3e-04
Identities = 64/358 (17%), Positives = 101/358 (28%), Gaps = 149/358 (41%)
Query: 13 HPSPTLDESKVRDY------LLREISTETAFLESQ-----AVRLSDELNETLRLFRALKR 61
+ S ++ SKV + L E E +LE A +L E + TL +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEF--ENCYLEGNDIHALAAKLLQENDTTL----VKTK 120
Query: 62 SVVTQYYA----TNRSNRRVHPTI----VKAE------------------EEMRE----- 90
++ Y R + + V EE+R+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 91 DGGVEVKVEPG----LELPSRKSKRKKV-------------PRLVPDTGR--------P- 124
V ++ EL +KV P PD P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 125 --LTQRNFRFYVGTMCKALG-SPA------CGQSTHK--------------WTVYVRNCE 161
+ Q YV K LG +P G + H W + +
Sbjct: 241 IGVIQ--LAHYV-VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS-- 295
Query: 162 SNPESIVRHIAHVKFML----HESYAPNNVVIVRKAPFKITREGW--GEF---PM----- 207
VR V F + +E+Y PN + P I + E PM
Sbjct: 296 ------VRKAITVLFFIGVRCYEAY-PNTSL-----PPSILEDSLENNEGVPSPMLSISN 343
Query: 208 ---KITIGFVDREN-----NRNVE--LVH-PVNFLHVKSII--PIISLETPIDVVLSL 252
+ +V++ N + VE LV+ N ++ P SL + L+L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-----VVSGPPQSLYG---LNLTL 393
Score = 28.9 bits (64), Expect = 2.3
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 39/89 (43%)
Query: 206 PMKITIGF--------VDRENNRNVELVHPVNF-------------------------LH 232
P ++ F V+R R LV VN+ +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 233 VKSIIPIISLETPIDVVLSLSETVLEYLM 261
++ I II L+ LSL E V +L
Sbjct: 1874 LQK-IDIIELQ----KSLSL-EEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.020
Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 90/320 (28%)
Query: 18 LDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKR---SVVTQY------- 67
D V+D +S E + D ++ TLRLF L +V ++
Sbjct: 33 FDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 68 -YA------TNRSNRRVHPTIVKAEEEMREDGGVEV-------KVEPGLELPSRKSKRKK 113
Y + T + E+ R +V +++P L+L R+
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL------RQA 143
Query: 114 VPRLVPDTGRPLTQRNFRFYV---GTMCKALGSPACGQST--------HK---------- 152
+ L P V G + LG G++ +K
Sbjct: 144 LLELRPAK-----------NVLIDG-V---LG---SGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 153 WTVYVRNCESNPESIVRHIAHVKFMLHESYAPNNVVIVRKAPFKITREGWGEFPMKITIG 212
W + ++NC S PE+++ + + + + ++ + + K+ ++
Sbjct: 186 W-LNLKNCNS-PETVLEMLQKLLYQIDPNWTSRS---DHSSNIKLRIHSIQAELRRL--- 237
Query: 213 FVDRENNR------NVELVHPVNFLHVKSIIPIISLETPI-DVVLSLSETVLEYLMDADM 265
+ NV+ N ++ I + + + D + + + T + +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 266 MTDLEERLEL--KALEQDID 283
+T +E L K L+
Sbjct: 298 LTP-DEVKSLLLKYLDCRPQ 316
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Length = 970
Score = 28.3 bits (63), Expect = 3.9
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 16 PTLDESKVRDYLLREISTETAFLESQAVRLSDELNETLRLFRALKR 61
E K +++LL E+ + L + +DE+ + + F L
Sbjct: 479 REWPEDKRQEWLLSELRGK-RPLLPPDLPQTDEIADVIGAFHVLAE 523
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 28.0 bits (62), Expect = 4.7
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 66 QYYATNRSNRRVHPTIVKAEEEMREDGGV 94
Q AT R ++ + E GG
Sbjct: 276 QIAATERILWKIKSSFTAKNWSKPESGGY 304
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 6.6
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 14/39 (35%)
Query: 165 ESIVRHIAHVKFMLHESYAPNNVVIVRKAP---FKITRE 200
+++ + A +K YA ++ AP K T E
Sbjct: 20 QALKKLQASLKL-----YADDS------APALAIKATME 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.385
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,359,474
Number of extensions: 258920
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 493
Number of HSP's successfully gapped: 10
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)