BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11128
(212 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KWB|A Chain A, Minimal Constraint Solution Nmr Structure Of
Translationally Controlled Tumor Protein (Tctp) From
C.Elegans, Northeast S Genomics Consortium Target Wr73
pdb|2LOY|A Chain A, Refined Miminal Constraint Solution Nmr Structure Of
Translationally- Controlled Tumor Protein (Tctp) From
Caenorhabditis Elegans, Northeast Structural Genomics
Consortium Target Wr73
Length = 189
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 9/123 (7%)
Query: 1 MKLVIHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEEA--DEGTDEAVESGVDIVLNHRL 58
MKLV L++ F + VVRK G++ + G NPSAEE D+G+DE VE G+DIVLNH+L
Sbjct: 20 MKLV---DDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKL 76
Query: 59 CETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQ--IETFKTNMNKVMKELLG--RFKDL 114
E + D + AY+K +MK ++ +E+ D+ ++ FK + + LL RFK+L
Sbjct: 77 VEMNCYEDASMFKAYIKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNL 136
Query: 115 QFF 117
FF
Sbjct: 137 AFF 139
>pdb|3EBM|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
pdb|3EBM|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein (Htctp) Mutant E12v
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 16 SQTVVRKVGDVN--IDGFNPSAEEAD-EGTDEAVESGVDIVLNHRLCETFAFGDKKGYTA 72
+ V R G+++ + G N SAE + EGT+ V +GVDIV+NH L ET +F K+ Y
Sbjct: 33 GKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET-SF-TKEAYKK 90
Query: 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFF 117
Y+KDYMK + KLEE+ P++++ F T + +K +L FK+ QFF
Sbjct: 91 YIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFF 135
>pdb|2HR9|A Chain A, Solution Structure Of Human Translationally Controlled
Tumor Protein
Length = 180
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 16 SQTVVRKVGDVN--IDGFNPSAEEAD-EGTDEAVESGVDIVLNHRLCETFAFGDKKGYTA 72
+ V R G+++ + G N SAE + EGT+ V +GVDIV+NH L ET +F K+ Y
Sbjct: 33 GKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET-SF-TKEAYKK 90
Query: 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFF 117
Y+KDYMK + KLEE+ P++++ F T + +K +L FK+ QFF
Sbjct: 91 YIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFF 135
>pdb|1YZ1|A Chain A, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|B Chain B, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|C Chain C, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
pdb|1YZ1|D Chain D, Crystal Structure Of Human Translationally Controlled
Tumour Associated Protein
Length = 174
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 16 SQTVVRKVGDVN--IDGFNPSAEEAD-EGTDEAVESGVDIVLNHRLCETFAFGDKKGYTA 72
+ V R G+++ + G N SAE + EGT+ V +GVDIV+NH L ET +F K+ Y
Sbjct: 35 GKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET-SF-TKEAYKK 92
Query: 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFF 117
Y+KDYMK + KLEE+ P++++ F T + +K +L FK+ QFF
Sbjct: 93 YIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFF 137
>pdb|3P3K|A Chain A, The Crystal Structure Of Translationally Controlled Tumor
Protein (Tctp) Of Plasmodium Falciparum
Length = 183
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 30 GFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKA 89
G ++E+A EG VE +DIV + +L T AF KK Y+AY+K+YM+K+ LEEK
Sbjct: 53 GIADNSEDAVEGMGADVEHVIDIVDSFQLTST-AFS-KKEYSAYIKNYMQKVAKYLEEKK 110
Query: 90 PDQIETFKTNMNKVMKELLGRFKDLQFF 117
PD++E FKT +K +L F D +F+
Sbjct: 111 PDRVEIFKTKAQPFIKHILTNFDDFEFY 138
>pdb|1TXJ|A Chain A, Crystal Structure Of Translationally Controlled Tumour-
Associated Protein (Tctp) From Plasmodium Knowlesi
Length = 171
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 30 GFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKA 89
G ++EEA +G VE +DIV + +L T KK Y+ Y+K+YM+K++ LEEK
Sbjct: 49 GIADNSEEAVDGMGADVEQVIDIVDSFQLTSTSL--SKKEYSVYIKNYMQKILKYLEEKK 106
Query: 90 PDQIETFKTNMNKVMKELLGRFKDLQFF 117
PD+++ FKT ++K +L F D +F+
Sbjct: 107 PDRVDVFKTKAQPLIKHILTNFDDFEFY 134
>pdb|1H6Q|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
pdb|1H7Y|A Chain A, Translationally Controlled Tumor-Associated Protein P23fyp
From Schizosaccharomyces Pombe
Length = 168
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 65/98 (66%), Gaps = 3/98 (3%)
Query: 20 VRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMK 79
V++ GDV+I G NPSAE+A+E +E E+ ++V + RL T +F DKK Y +Y+K YMK
Sbjct: 37 VKQGGDVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMK 93
Query: 80 KLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFF 117
+ A+L+E P+++ F+ N +K++L FKD F+
Sbjct: 94 AIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFY 131
>pdb|3TDU|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|A Chain A, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|B Chain B, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 200
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 91 DQIETFKTNMNKVMKEL--LGRFKDLQFFTVNFKEYQAEHMVDL 132
D IE K + K+ +EL GRFKD FT NF + + +DL
Sbjct: 73 DSIEKLKAQIPKMEQELKEPGRFKDFYQFTFNFAKNPGQKGLDL 116
>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana
Length = 320
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%)
Query: 75 KDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLI 134
++ +KK +L E IE KT +K++ + L FT E +D+ +
Sbjct: 31 REKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGHIDIAV 90
Query: 135 HSSVRRHSVIPMNGNLP 151
HS + +P LP
Sbjct: 91 HSMKDVPTYLPEKTILP 107
>pdb|2X5C|A Chain A, Crystal Structure Of Hypothetical Protein Orf131 From
Pyrobaculum Spherical Virus
pdb|2X5C|B Chain B, Crystal Structure Of Hypothetical Protein Orf131 From
Pyrobaculum Spherical Virus
Length = 131
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 97 KTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMV 130
KT+++ ++KEL KDL++ +KEY+ E V
Sbjct: 90 KTDISAILKELCEVKKDLEYVLKRYKEYEEEGGV 123
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 26 VNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAK 84
+ID +NP E E + G+D ++ +++ D+ Y + DY+ L AK
Sbjct: 224 THIDIYNPPVERIIESIKKFAGLGLDNIITELDMSIYSWNDRSDYGDSIPDYILTLQAK 282
>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase
At 2.8a Resolution
pdb|3EQ1|B Chain B, The Crystal Structure Of Human Porphobilinogen Deaminase
At 2.8a Resolution
Length = 361
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 65 GDKKGYTAYLKDYMKKLVAKLEEKAPD---QIETFKTNMNKVMKELLGRFKDLQFFTVNF 121
G +K A ++ +VA L+ P +I T +K++ L + + FT
Sbjct: 24 GTRKSQLARIQ--TDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKEL 81
Query: 122 KEYQAEHMVDLLIHSSVRRHSVIPMNGNLPIYCR 155
+ ++ VDL++HS +V+P + C+
Sbjct: 82 EHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICK 115
>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase
pdb|3ECR|B Chain B, Structure Of Human Porphobilinogen Deaminase
Length = 364
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 65 GDKKGYTAYLKDYMKKLVAKLEEKAPD---QIETFKTNMNKVMKELLGRFKDLQFFTVNF 121
G +K A ++ +VA L+ P +I T +K++ L + + FT
Sbjct: 27 GTRKSQLARIQ--TDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKEL 84
Query: 122 KEYQAEHMVDLLIHSSVRRHSVIPMNGNLPIYCR 155
+ ++ VDL++HS +V+P + C+
Sbjct: 85 EHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICK 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,876,597
Number of Sequences: 62578
Number of extensions: 223720
Number of successful extensions: 802
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 18
length of query: 212
length of database: 14,973,337
effective HSP length: 95
effective length of query: 117
effective length of database: 9,028,427
effective search space: 1056325959
effective search space used: 1056325959
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)