Query psy11128
Match_columns 212
No_of_seqs 122 out of 342
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 18:42:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00151 translationally contr 100.0 6.4E-58 1.4E-62 385.1 13.3 140 5-154 27-172 (172)
2 PF00838 TCTP: Translationally 100.0 1.3E-56 2.9E-61 373.9 10.0 140 5-151 21-165 (165)
3 KOG1727|consensus 100.0 1.7E-50 3.6E-55 338.2 7.1 140 5-154 21-169 (169)
4 PRK09347 folE GTP cyclohydrola 70.9 12 0.00025 32.6 5.7 53 126-184 64-119 (188)
5 PF09230 DFF40: DNA fragmentat 66.7 7.3 0.00016 35.2 3.7 68 63-134 51-124 (230)
6 PF01227 GTP_cyclohydroI: GTP 63.6 11 0.00023 32.6 4.0 50 126-181 56-107 (179)
7 PRK00239 rpsT 30S ribosomal pr 62.4 29 0.00064 26.6 5.9 41 67-107 21-61 (88)
8 cd01145 TroA_c Periplasmic bin 60.5 17 0.00038 30.5 4.8 35 73-107 116-150 (203)
9 PF06888 Put_Phosphatase: Puta 57.1 40 0.00086 30.0 6.6 38 115-167 118-155 (234)
10 TIGR00029 S20 ribosomal protei 57.0 41 0.00089 25.9 5.8 40 67-106 21-60 (87)
11 cd01018 ZntC Metal binding pro 52.5 27 0.00058 30.6 4.8 35 73-107 120-154 (266)
12 cd01019 ZnuA Zinc binding prot 49.5 30 0.00064 30.8 4.6 35 74-108 130-164 (286)
13 PF01649 Ribosomal_S20p: Ribos 49.1 62 0.0014 24.6 5.7 39 68-106 21-59 (84)
14 PTZ00484 GTP cyclohydrolase I; 48.0 49 0.0011 30.3 5.8 51 125-181 134-186 (259)
15 COG0803 LraI ABC-type metal io 48.0 34 0.00073 30.9 4.8 38 72-109 140-177 (303)
16 PLN00078 photosystem I reactio 47.5 15 0.00032 30.1 2.1 41 69-119 56-97 (122)
17 PLN03044 GTP cyclohydrolase I; 47.0 34 0.00074 29.8 4.4 51 125-181 60-113 (188)
18 cd00642 GTP_cyclohydro1 GTP cy 46.2 94 0.002 26.9 7.0 51 125-181 60-112 (185)
19 PF01297 TroA: Periplasmic sol 45.6 52 0.0011 28.2 5.4 37 72-108 99-135 (256)
20 CHL00102 rps20 ribosomal prote 43.8 88 0.0019 24.4 5.9 39 68-106 22-67 (93)
21 KOG1727|consensus 43.7 14 0.00031 31.9 1.6 37 74-113 65-103 (169)
22 PLN02531 GTP cyclohydrolase I 42.0 92 0.002 30.9 7.0 53 126-184 101-157 (469)
23 PF01208 URO-D: Uroporphyrinog 42.0 27 0.00058 31.1 3.2 43 46-90 192-234 (343)
24 PHA02937 hypothetical protein; 41.8 41 0.00089 31.3 4.3 48 66-120 55-110 (310)
25 PF08654 DASH_Dad2: DASH compl 41.4 30 0.00065 27.4 3.0 37 68-113 20-56 (103)
26 PF11848 DUF3368: Domain of un 41.0 5.6 0.00012 26.9 -1.0 16 197-212 2-17 (48)
27 PF14967 FAM70: FAM70 protein 39.8 52 0.0011 31.2 4.7 61 149-210 157-225 (327)
28 PRK09545 znuA high-affinity zi 38.9 61 0.0013 29.4 5.0 35 73-107 153-187 (311)
29 cd01020 TroA_b Metal binding p 37.6 56 0.0012 28.6 4.4 34 74-107 104-137 (264)
30 cd00717 URO-D Uroporphyrinogen 35.8 55 0.0012 29.4 4.2 42 46-89 187-228 (335)
31 KOG3415|consensus 35.3 42 0.00091 27.8 3.0 31 175-205 43-73 (129)
32 cd01017 AdcA Metal binding pro 35.2 72 0.0016 28.1 4.8 35 73-107 121-155 (282)
33 KOG3120|consensus 35.0 64 0.0014 29.7 4.4 33 123-168 137-169 (256)
34 TIGR00063 folE GTP cyclohydrol 34.3 1.2E+02 0.0025 26.3 5.7 50 126-181 56-107 (180)
35 PF12095 DUF3571: Protein of u 31.6 84 0.0018 24.3 4.0 57 52-116 13-69 (83)
36 TIGR03772 anch_rpt_subst ancho 31.4 80 0.0017 31.1 4.8 35 73-107 319-353 (479)
37 cd01137 PsaA Metal binding pro 31.1 91 0.002 27.8 4.7 35 73-107 125-159 (287)
38 PRK00115 hemE uroporphyrinogen 31.0 67 0.0015 29.2 4.0 43 46-90 196-238 (346)
39 PF07442 Ponericin: Ponericin; 30.8 86 0.0019 19.9 3.2 27 74-100 2-28 (29)
40 cd03307 Mta_CmuA_like MtaA_Cmu 30.5 80 0.0017 28.3 4.3 42 46-87 181-222 (326)
41 KOG1551|consensus 29.8 88 0.0019 29.8 4.5 61 98-165 281-344 (371)
42 cd01016 TroA Metal binding pro 29.5 1E+02 0.0022 27.3 4.7 35 73-107 109-143 (276)
43 TIGR01464 hemE uroporphyrinoge 28.7 85 0.0018 28.3 4.2 41 46-88 190-230 (338)
44 PF07431 DUF1512: Protein of u 28.5 43 0.00093 32.1 2.3 68 105-179 62-138 (355)
45 PF03489 SapB_2: Saposin-like 27.2 1.4E+02 0.003 18.2 3.8 26 68-93 2-28 (35)
46 KOG0188|consensus 26.1 3.5E+02 0.0075 29.0 8.4 89 71-170 755-849 (895)
47 COG0268 RpsT Ribosomal protein 25.9 2.5E+02 0.0055 21.9 5.8 40 67-106 21-60 (88)
48 cd06908 M14_AGBL4_like Peptida 25.9 48 0.001 29.9 2.1 17 112-130 82-98 (261)
49 PLN02433 uroporphyrinogen deca 25.7 96 0.0021 28.3 4.0 42 46-89 189-230 (345)
50 PF13232 Complex1_LYR_1: Compl 25.0 1.2E+02 0.0026 20.7 3.5 39 68-106 20-59 (61)
51 KOG2582|consensus 25.0 2.6E+02 0.0055 27.6 6.8 49 89-146 319-369 (422)
52 cd03308 CmuA_CmuC_like CmuA_Cm 24.2 1E+02 0.0022 28.7 3.9 42 46-88 224-267 (378)
53 TIGR00430 Q_tRNA_tgt tRNA-guan 23.8 1.4E+02 0.003 28.2 4.8 52 150-207 298-352 (368)
54 PF14679 FANCI_HD1: FANCI heli 23.8 18 0.0004 27.8 -0.8 29 91-119 33-62 (87)
55 PRK06252 methylcobalamin:coenz 22.4 1.3E+02 0.0028 26.9 4.2 42 46-87 190-231 (339)
56 cd03309 CmuC_like CmuC_like. P 22.2 1.5E+02 0.0032 27.3 4.5 39 49-88 169-210 (321)
57 PF11738 DUF3298: Protein of u 21.9 54 0.0012 22.5 1.3 25 113-148 43-68 (78)
58 PF06518 DUF1104: Protein of u 21.9 2.2E+02 0.0047 22.2 4.8 6 56-61 32-37 (93)
59 PF08331 DUF1730: Domain of un 21.7 88 0.0019 22.8 2.4 25 67-91 45-69 (78)
60 PF09164 VitD-bind_III: Vitami 21.2 3E+02 0.0064 20.7 5.1 40 66-105 7-46 (68)
61 cd01389 MATA_HMG-box MATA_HMG- 20.7 3.2E+02 0.0069 19.3 5.7 49 68-116 7-71 (77)
62 PLN00108 unknown protein; Prov 20.6 68 0.0015 29.4 2.0 34 104-143 212-245 (257)
63 cd06235 M14_Nna1_like_2 Subgro 20.4 98 0.0021 27.5 2.9 22 104-130 79-100 (258)
No 1
>PTZ00151 translationally controlled tumor-like protein; Provisional
Probab=100.00 E-value=6.4e-58 Score=385.10 Aligned_cols=140 Identities=32% Similarity=0.485 Sum_probs=133.7
Q ss_pred eEeCCEEEEEEEEEEEeecCccccccCCCCCCcc-ccccccccccccceeeccccccccCCCChHHHHHHHHHHHHHHHH
Q psy11128 5 IHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEEA-DEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVA 83 (212)
Q Consensus 5 ~~vdgv~yEVegK~Vtk~~gnidLiGaNaSAEe~-dEg~d~tv~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~ 83 (212)
.+++|++|||+||+|+++++++ |+|||||++ +|++|+++++|||||+||||||| +| |||+|++|||+|||+|++
T Consensus 27 ~~~~~~~yEV~~k~v~~~~~di---g~n~saee~~~e~~d~~~~~vvDIV~~frLqet-~f-~Kk~Y~~yiK~YmK~vk~ 101 (172)
T PTZ00151 27 AEFSEIAFEVKSKKVIKGNEDY---GIADNSEEGDVEGVDADVETVIDIVDAFKLQST-PF-TKKEYSTYIKKYMQRIKA 101 (172)
T ss_pred cccCCEEEEEeeEEEEECCccc---cCCCCcccccccccccccEEEEEeeecCcceec-CC-CHHHHHHHHHHHHHHHHH
Confidence 4678999999999999987763 999999984 89999999999999999999999 58 999999999999999999
Q ss_pred HHhhcChhhhHHHHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccC-----CCCceeee
Q psy11128 84 KLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM-----NGNLPIYC 154 (212)
Q Consensus 84 kLeE~~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~-----dgl~~e~~ 154 (212)
||+|++||||+.|+++||++||+||+||||||||||| ||||||||||| +|||||+||| |||++|||
T Consensus 102 ~L~e~~pe~v~~Fk~~a~~~vK~il~~Fkd~qFf~Ge--Smd~dgmv~l~---~Yredg~tP~~~f~KdGL~eeK~ 172 (172)
T PTZ00151 102 YLEEKNPDRVEKFKTNAQPFVKHILENFDDFEFYLGE--SLDCEAGLIYG---YYKGEELAPRFVYIKDGLKEERY 172 (172)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHhcCCceEeecC--CCCCCccEEEE---eecCCCcceEEEEEcccceeecC
Confidence 9999999999999999999999999999999999999 89999999999 6799999999 99999998
No 2
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=100.00 E-value=1.3e-56 Score=373.94 Aligned_cols=140 Identities=45% Similarity=0.683 Sum_probs=126.7
Q ss_pred eEeCCEEEEEEEEEEEeecCccccccCCCCCCccccccccccccccceeeccccccccCCCChHHHHHHHHHHHHHHHHH
Q psy11128 5 IHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAK 84 (212)
Q Consensus 5 ~~vdgv~yEVegK~Vtk~~gnidLiGaNaSAEe~dEg~d~tv~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~k 84 (212)
..++|++|||+||+|++++.+..+||||||||+++|++++++++|||||+||||||| +| |||+|++|||+|||+|++|
T Consensus 21 ~~~~~~~yeV~gk~vt~~~~d~~liG~N~SaE~~~e~~~~~~~~viDiV~~~~L~et-~f-~Kk~y~~yiK~Y~K~i~~k 98 (165)
T PF00838_consen 21 ELVDDVFYEVEGKMVTRTGIDDSLIGANPSAEEGEEGTDDSVETVIDIVDNHRLQET-SF-DKKSYKAYIKDYMKKIKEK 98 (165)
T ss_dssp EEGCTTEEEEE--EEEEETTB-TTTSSS--SSSSSSSSCCCECEEEHHHHHTTEEEE-CC-HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEEEEEeeccccccccccCcccccCccCCCCccEEccceeecccceee-cc-cHHHHHHHHHHHHHHHHHH
Confidence 446999999999999998555557899999999999999999999999999999999 68 9999999999999999999
Q ss_pred HhhcChhhhHHHHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccC-----CCCce
Q psy11128 85 LEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM-----NGNLP 151 (212)
Q Consensus 85 LeE~~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~-----dgl~~ 151 (212)
|++++|+||++|+++||+++|+||+||||||||+|| ||||||||||| +|||||+||| |||++
T Consensus 99 L~e~~~erv~~F~~~a~~~vK~il~nfkd~qFf~Ge--sm~~dgmv~l~---~yredg~tP~~~f~KdGL~E 165 (165)
T PF00838_consen 99 LEENGPERVKAFKKGAQEFVKKILANFKDYQFFTGE--SMDPDGMVALL---NYREDGVTPYFIFFKDGLKE 165 (165)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHHHHTGGGCEEEEET--TCCTTS-EEEE---EEETTSSSEEEEEEGGGEEE
T ss_pred HhhhccchhhHHHHHhHHHHHHHHhhcccccccccc--ccCCCCcEEEE---EecCCCccEEEEEEcccccC
Confidence 999999999999999999999999999999999999 89999999999 6799999999 99874
No 3
>KOG1727|consensus
Probab=100.00 E-value=1.7e-50 Score=338.25 Aligned_cols=140 Identities=42% Similarity=0.573 Sum_probs=125.5
Q ss_pred eEeCCEEEEEEEEEEEeecCccccccCCCCCCc--cccccccccccccceeeccccccccCCCChHHHHHHHHHHHHHHH
Q psy11128 5 IHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEE--ADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLV 82 (212)
Q Consensus 5 ~~vdgv~yEVegK~Vtk~~gnidLiGaNaSAEe--~dEg~d~tv~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk 82 (212)
+++++++|||+||+|||+++|+.++|+|||||+ +||++++++++++|||+||||||+++ .|++|++|||+|||+|+
T Consensus 21 k~i~~l~~EvegK~vsr~~~D~~lig~NpSaE~~~edegte~~~~~~vdiV~~~rLqEq~~--~ke~~k~yik~ymK~v~ 98 (169)
T KOG1727|consen 21 KEVDDLCYEVEGKMVTRTNGDDSLIGANPSAEEGAEDEGTEETVETVVDIVLNFRLQEQSP--FKERFKAYIKGYMKAVK 98 (169)
T ss_pred HHHHhhhheeeceeccccCccchhcccCccccccccCCcchhheeeeeeeeeeecccccch--HHHHHHHHHHHHHHHhh
Confidence 345679999999999999777778999999997 58999999999999999999999864 49999999999999999
Q ss_pred HHHhhcChhhhHHHHHhHHHHHHHHhc-CCCCcceeeecCCCCCccceEEecccccccccc-cccC-----CCCceeee
Q psy11128 83 AKLEEKAPDQIETFKTNMNKVMKELLG-RFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHS-VIPM-----NGNLPIYC 154 (212)
Q Consensus 83 ~kLeE~~perVk~Fkk~A~~~VK~IL~-NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDg-vtP~-----dgl~~e~~ 154 (212)
+||+| ++++.|++++++++|.++. ||||||||+|| ||||||||||+ +||||| ++|+ +||++|||
T Consensus 99 ~klee---~~~~~f~k~~~~a~q~~h~anFKnyqFFIGE--nMnpdgmVal~---~YRedg~~~P~~~ffk~gl~~ekc 169 (169)
T KOG1727|consen 99 AKLEE---EDVDVFKKNIQGAEKIKHIANFKNYQFFIGE--NMNPDGMVALL---DYREDGGVTPYMIFFKDGLEEEKC 169 (169)
T ss_pred hhhhh---hhhhhhhhccchHHHHHHhhccccceeeecc--cCCCCceEEEe---eeecCCCcCceEEEeccCcccccC
Confidence 99998 6667777777777775555 99999999999 89999999999 789976 9999 99999998
No 4
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=70.86 E-value=12 Score=32.58 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=36.0
Q ss_pred ccceEEecc--cccccccccccCCCCceeeeeeccccccccchhhHHHHHHHHHHHH-HHHH
Q psy11128 126 AEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILGISTILKIIIYWT-RLVV 184 (212)
Q Consensus 126 pDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 184 (212)
.|+||.+-+ -.++-|+-.-|+.| .|-++|-=-|.|+|+|.|-+++=+.. ||-+
T Consensus 64 ~~~mV~v~~I~f~S~CEHHllPf~G------~~hIaYiP~~~ViGLSKl~Riv~~~arRlQi 119 (188)
T PRK09347 64 YDEMVLVKDITFYSMCEHHLLPFIG------KAHVAYIPKGKVIGLSKIARIVDFFARRPQV 119 (188)
T ss_pred CCceEEEeCceEEeecccccCceee------EEEEEEeCCCccccHHHHHHHHHHHHcCchh
Confidence 467887632 22455666666655 56677766799999999999986654 4443
No 5
>PF09230 DFF40: DNA fragmentation factor 40 kDa; InterPro: IPR015311 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. DNA fragmentation factor (DFF) is a complex of the DNase DFF40 (CAD) and its chaperone/inhibitor DFF45 (ICAD-L). In its inactive form, DFF is a heterodimer composed of a 45kDa chaperone inhibitor subunit (DFF45 or ICAD), and a 40kDa latent endonuclease subunit (DFF40 or CAD). Upon caspase-3 cleavage of DFF45, DFF40 forms active endonuclease homo-oligomers. It is activated during apoptosis to induce DNA fragmentation. DNA binding by DFF is mediated by the nuclease subunit, which can also form stable DNA complexes after release from DFF [, ]. The nuclease subunit is inhibited in DNA cleavage but not in DNA binding []. DFF45 can also be cleaved and inactivated by caspase-7 but not by caspase-6 and caspase-8. The cleaved DFF45 fragments dissociate from DFF40, allowing DFF40 to oligomerise, forming a large complex that cleaves DNA by introducing double strand breaks. Histone H1 confers DNA binding ability to DFF and stimulates the nuclease activity of DFF40 [].; GO: 0016787 hydrolase activity, 0006309 DNA fragmentation involved in apoptotic nuclear change, 0005634 nucleus, 0005737 cytoplasm; PDB: 1V0D_A.
Probab=66.75 E-value=7.3 Score=35.16 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=38.0
Q ss_pred CCCChHHHHHH-----HHHHHHHHHHHHhhc-ChhhhHHHHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecc
Q psy11128 63 AFGDKKGYTAY-----LKDYMKKLVAKLEEK-APDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLI 134 (212)
Q Consensus 63 ~F~dKK~Yk~Y-----IK~YmKkIk~kLeE~-~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~ 134 (212)
.|.||.+|+.| |++|++++++.++.. +|.--+.| ..+-+.++..|...+=+-.|--- --+.+.+.|+.
T Consensus 51 rfktK~~yM~~~~qsRIRgY~~k~~~~~~~~~~~~ar~~~-~~~l~~~~~~Lk~~~Yng~YFDR---~~a~~~~rLCt 124 (230)
T PF09230_consen 51 RFKTKSEYMRYRCQSRIRGYFYKVKEYLSKVQNAKAREEY-LRVLESFRQKLKSDKYNGSYFDR---SCAKEGVRLCT 124 (230)
T ss_dssp T--BHHHHHHHHHHHHHHHHHHHHHGGGGGS--TTTHHHH-HHHHHHHHHHHHHGGGGGGGG-S---S-S-TTT-SS-
T ss_pred hhccHHHHHhhhHHHhHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHhcCCccceeecc---ccccccccccC
Confidence 46689999877 899999999999987 44333444 34445556666555433333211 11345567774
No 6
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=63.61 E-value=11 Score=32.59 Aligned_cols=50 Identities=24% Similarity=0.449 Sum_probs=35.5
Q ss_pred ccceEEecc--cccccccccccCCCCceeeeeeccccccccchhhHHHHHHHHHHHHH
Q psy11128 126 AEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILGISTILKIIIYWTR 181 (212)
Q Consensus 126 pDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (212)
.++||++-+ -.++-|+-.-|+.| .|.++|-.-|.|+|+|.+-+++=+..|
T Consensus 56 ~~~~Vvv~~I~f~S~CEHHllPf~G------~~~VaYiP~~~viGLSKl~RiV~~~ar 107 (179)
T PF01227_consen 56 YDEMVVVRDIPFYSMCEHHLLPFFG------TAHVAYIPGGRVIGLSKLARIVDFFAR 107 (179)
T ss_dssp CSSEEEEEEEEEEEEETTTSEEEEE------EEEEEEE-SSEEE-HHHHHHHHHHHHS
T ss_pred CCCeEEECCcceeeeccccccceee------eEEEEEEeCCcccChhHHHHHHHHHhc
Confidence 678998743 12445666666655 889999999999999999999876653
No 7
>PRK00239 rpsT 30S ribosomal protein S20; Reviewed
Probab=62.39 E-value=29 Score=26.64 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
-++|++-+|.++|++..-+++.+.|........++..+.+.
T Consensus 21 N~~~kS~~kT~iKk~~~ai~~~~~~~a~~~~~~a~s~iDka 61 (88)
T PRK00239 21 NKSRKSRVRTAIKKVEAAIAAGDKEAAEEALKAAQSKIDKA 61 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999888888777777777666543
No 8
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=60.54 E-value=17 Score=30.51 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+.-+.|+++++++.+++
T Consensus 116 ~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l 150 (203)
T cd01145 116 NAPALAKALADALIELDPSEQEEYKENLRVFLAKL 150 (203)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 45788999999999999998888988888887764
No 9
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=57.06 E-value=40 Score=30.00 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=25.3
Q ss_pred ceeeecCCCCCccceEEecccccccccccccCCCCceeeeeeccccccccchh
Q psy11128 115 QFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPMNGNLPIYCRCCSGYECMGSIL 167 (212)
Q Consensus 115 qFYtGE~~smnpDGMVaLL~~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~ 167 (212)
+.||-+. ..|++|.+-+ .||.. .. |..|+..-|-|.+|
T Consensus 118 ~I~TNpa-~~~~~G~l~v-----------~pyh~--h~-C~~C~~NmCK~~il 155 (234)
T PF06888_consen 118 EIFTNPA-CFDADGRLRV-----------RPYHS--HG-CSLCPPNMCKGKIL 155 (234)
T ss_pred eEEeCCc-eecCCceEEE-----------eCccC--CC-CCcCCCccchHHHH
Confidence 4566652 5566676533 37744 33 99999999999876
No 10
>TIGR00029 S20 ribosomal protein S20. This family consists of bacterial (and chloroplast) examples of the bacteria ribosomal small subunit protein S20.
Probab=57.00 E-value=41 Score=25.87 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHH
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKE 106 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~ 106 (212)
-+++++-+|.++|++..-+++.+.|........|+..+.+
T Consensus 21 N~~~kS~~kT~iKk~~~ai~~~d~~~a~~~l~~a~s~iDk 60 (87)
T TIGR00029 21 NASQKSKMKTIIKKVYAAIAAGDKDKAQEAFKEAAKKLDR 60 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999988888777776777666554
No 11
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=52.45 E-value=27 Score=30.55 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|.++++++.+.+
T Consensus 120 ~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L 154 (266)
T cd01018 120 NAKIMAENIYEALAELDPQNATYYQANLDALLAEL 154 (266)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 35788999999999999999888998888887754
No 12
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=49.49 E-value=30 Score=30.80 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHh
Q psy11128 74 LKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELL 108 (212)
Q Consensus 74 IK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL 108 (212)
.+.+.+.|.++|.+..|+.-+.|.++++++.+++-
T Consensus 130 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~ 164 (286)
T cd01019 130 AAEVAQAVAEKLSALDPDNAATYAANLEAFNARLA 164 (286)
T ss_pred HHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999887743
No 13
>PF01649 Ribosomal_S20p: Ribosomal protein S20; InterPro: IPR002583 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family consists of bacterial (and chloroplast) examples of the ribosomal small subunit protein S20. Bacterial ribosomal protein S20 forms part of the 30S ribosomal subunit, and interacts with 16S rRNA.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1I94_T 1FJG_T 4DH9_T 3KNJ_T 3TVG_W 3UYF_W 3V28_T 3KIS_t 3HUY_T 1HNX_T ....
Probab=49.13 E-value=62 Score=24.56 Aligned_cols=39 Identities=8% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHH
Q psy11128 68 KGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKE 106 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~ 106 (212)
+.+++-+|.++|++.+-+++.+.|.+..+...++..+.+
T Consensus 21 r~~kS~~rT~iKk~~~ai~~~~~~~a~~~l~~a~s~iDk 59 (84)
T PF01649_consen 21 RSRKSRVRTAIKKFREAIEAGDKEEAKELLRKAYSAIDK 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 578888999999999999988888877777777766554
No 14
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=47.99 E-value=49 Score=30.30 Aligned_cols=51 Identities=29% Similarity=0.540 Sum_probs=35.3
Q ss_pred CccceEEecc--cccccccccccCCCCceeeeeeccccccccchhhHHHHHHHHHHHHH
Q psy11128 125 QAEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILGISTILKIIIYWTR 181 (212)
Q Consensus 125 npDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (212)
+.++||.+-+ -.++-|+-.-|+.| .|=++|-=-|-++|+|.|-+++=++.|
T Consensus 134 ~~~~mVvv~dI~f~S~CEHHLLPf~G------~~hIaYiP~~~ViGLSKl~RiV~~~ar 186 (259)
T PTZ00484 134 NNDEMVKVRDIDIFSLCEHHLLPFEG------ECTIGYIPNKKVLGLSKFARIIEIFSR 186 (259)
T ss_pred CCCcEEEEeccceEEecccccCceEE------EEEEEEecCCeEecHHHHHHHHHHHhc
Confidence 3568998632 22556777777766 344566556789999999999876654
No 15
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=47.96 E-value=34 Score=30.90 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhc
Q psy11128 72 AYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLG 109 (212)
Q Consensus 72 ~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~ 109 (212)
...+.|.+.|++.|.+..|+--+.|+++|+++.+++-+
T Consensus 140 ~na~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~ 177 (303)
T COG0803 140 KNAKIYAENIADALVELDPENKETYEKNAEAYLKKLNK 177 (303)
T ss_pred HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999887653
No 16
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=47.45 E-value=15 Score=30.06 Aligned_cols=41 Identities=20% Similarity=0.413 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhcCCCCc-ceeee
Q psy11128 69 GYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDL-QFFTV 119 (212)
Q Consensus 69 ~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~NFKDy-qFYtG 119 (212)
+=+..|+.|+|+-.+.-+++..||.+.|-+. ||+|| +|=-|
T Consensus 56 Sr~~liq~llkkSeeNKakndkERLDdYYKR----------NykDYF~fveG 97 (122)
T PLN00078 56 SRKALLQEYLKKSEENKEKNDKERLDDYYKR----------NYKDYFGLIEG 97 (122)
T ss_pred hHHHHHHHHHHHhHHhHHHhHHHHHHHHHHH----------hHHHHHHHhcc
Confidence 3346788999888888877788888887665 88885 44333
No 17
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=47.02 E-value=34 Score=29.78 Aligned_cols=51 Identities=31% Similarity=0.457 Sum_probs=35.3
Q ss_pred CccceEEecc--cccccccccccCCCCceeeeeeccccccc-cchhhHHHHHHHHHHHHH
Q psy11128 125 QAEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECM-GSILGISTILKIIIYWTR 181 (212)
Q Consensus 125 npDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 181 (212)
+.++||.+=+ -.++-|+-.-|+.| .+.++|-=- |.|+|+|.|.+++=+..|
T Consensus 60 ~~~~mViv~~I~f~S~CEHHllPf~G------~~hIaYiP~~~~ViGLSKl~RiV~~~ar 113 (188)
T PLN03044 60 GHEEMVVVRDIDIHSTCEETMVPFTG------RIHVGYIPNAGVILGLSKLARIAEVYAR 113 (188)
T ss_pred CCCcEEEEeCceEEEeccccccceee------eEEEEEECCCCccccHHHHHHHHHHHhc
Confidence 3567987632 22566777777766 455666556 889999999999866553
No 18
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=46.23 E-value=94 Score=26.92 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=36.3
Q ss_pred CccceEEecc--cccccccccccCCCCceeeeeeccccccccchhhHHHHHHHHHHHHH
Q psy11128 125 QAEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILGISTILKIIIYWTR 181 (212)
Q Consensus 125 npDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (212)
+.++||++=+ -.++-|+-.-|+.| .|.++|-=-|.|+|+|.|.+|+=+..|
T Consensus 60 ~~~~mV~v~~I~f~S~CEHHllPf~G------~~~VaYiP~~~ViGLSKl~RiV~~~ar 112 (185)
T cd00642 60 DHDEMVIVKDITLFSMCEHHLVPFYG------KVHIAYIPKDKVIGLSKLARIVEFFSR 112 (185)
T ss_pred CCCcEEEEeCeeEEEeccccccceEE------EEEEEEecCCeeeeHHHHHHHHHHHhc
Confidence 4578987642 22555666666655 566777667999999999999876654
No 19
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=45.60 E-value=52 Score=28.23 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHh
Q psy11128 72 AYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELL 108 (212)
Q Consensus 72 ~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL 108 (212)
...+.+.+.|.+.|.+..|+.-+.|+++++++.+.+-
T Consensus 99 ~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~ 135 (256)
T PF01297_consen 99 ENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELD 135 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999998877644
No 20
>CHL00102 rps20 ribosomal protein S20
Probab=43.75 E-value=88 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.383 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------cChhhhHHHHHhHHHHHHH
Q psy11128 68 KGYTAYLKDYMKKLVAKLEE-------KAPDQIETFKTNMNKVMKE 106 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~kLeE-------~~perVk~Fkk~A~~~VK~ 106 (212)
+++++-+|.+||++..-++. .+.+.+..+...|+..+.+
T Consensus 22 ~~~kS~~rT~iKk~~~ai~~~~~~~~~~d~~~a~~~l~~a~s~iDk 67 (93)
T CHL00102 22 KAYKSSVKTLIKKYLKNLEDYKTSPNSNNKKKVQETLSSVYSKIDK 67 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHH
Confidence 57788888888888888876 5566777766766665554
No 21
>KOG1727|consensus
Probab=43.69 E-value=14 Score=31.92 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhcCh--hhhHHHHHhHHHHHHHHhcCCCC
Q psy11128 74 LKDYMKKLVAKLEEKAP--DQIETFKTNMNKVMKELLGRFKD 113 (212)
Q Consensus 74 IK~YmKkIk~kLeE~~p--erVk~Fkk~A~~~VK~IL~NFKD 113 (212)
++.+..-+.-||+|++| +++++|+|+ ++|.|.++...
T Consensus 65 ~~~vdiV~~~rLqEq~~~ke~~k~yik~---ymK~v~~klee 103 (169)
T KOG1727|consen 65 ETVVDIVLNFRLQEQSPFKERFKAYIKG---YMKAVKAKLEE 103 (169)
T ss_pred eeeeeeeeeecccccchHHHHHHHHHHH---HHHHhhhhhhh
Confidence 44667777889999999 899999887 55555554443
No 22
>PLN02531 GTP cyclohydrolase I
Probab=42.02 E-value=92 Score=30.88 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=36.7
Q ss_pred ccceEEecc--cccccccccccCCCCceeeeeecccccc-ccchhhHHHHHHHHHHHH-HHHH
Q psy11128 126 AEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYEC-MGSILGISTILKIIIYWT-RLVV 184 (212)
Q Consensus 126 pDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~ 184 (212)
-++||++-+ -.++-|+-.-|+.| .|-++|-. -|.|+|+|.|-+|+=+.. ||-+
T Consensus 101 ~~emVvv~dI~f~S~CEHHlLPf~G------~ahVaYiP~~~~ViGLSKl~RiV~~~ArRlQv 157 (469)
T PLN02531 101 CGGLVVVRDLDLFSYCESCLLPFQV------KCHIGYVPSGQRVVGLSKLSRVAEVFAKRLQD 157 (469)
T ss_pred CCceEEEeCeeEEEeccccccceee------EEEEEEEcCCCeEechHHHHHHHHHHhcCchh
Confidence 467987642 22455666666665 56788877 589999999999986654 4443
No 23
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=41.96 E-value=27 Score=31.09 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=30.8
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhcCh
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAP 90 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~~p 90 (212)
.+.|+|++.=+. +.. .+.+.+.|..|++.|+|++.+.+++..+
T Consensus 192 ~~~G~d~i~~~d-~~~-~~isp~~f~e~~~P~~k~i~~~i~~~g~ 234 (343)
T PF01208_consen 192 IEAGADGIFIFD-SSG-SLISPEMFEEFILPYLKKIIDAIKEAGK 234 (343)
T ss_dssp HHTT-SEEEEEE-TTG-GGS-HHHHHHHTHHHHHHHHHHHHHHET
T ss_pred HHhCCCcccccc-ccc-CCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356677665555 444 3459999999999999999999987543
No 24
>PHA02937 hypothetical protein; Provisional
Probab=41.82 E-value=41 Score=31.27 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHhHHHHHHHHhcCCCCcceeeec
Q psy11128 66 DKKGYTAYLKDYMKKLVAKLEEK--------APDQIETFKTNMNKVMKELLGRFKDLQFFTVN 120 (212)
Q Consensus 66 dKK~Yk~YIK~YmKkIk~kLeE~--------~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE 120 (212)
.-+.-+.+|+.||+.++++|+|. .|||--...+ +|=+-.|=|-|.||.
T Consensus 55 Nv~~vk~li~~Y~~~lrd~~ked~~nF~~WIepDrHL~Yla-------rI~AgLkiY~mLt~~ 110 (310)
T PHA02937 55 NVNYVKNLIRVYMKDLRDYLKEDFCNFCDWIEPDRHLVYLA-------RIHAGLKIYAMLTGK 110 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccccCccchhhhHH-------HHhhhhhhhhhhccc
Confidence 35566788999999999999997 7998444444 444445557777765
No 25
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=41.44 E-value=30 Score=27.38 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhcCCCC
Q psy11128 68 KGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKD 113 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~NFKD 113 (212)
+++...++.+|.+|.++|+ .++...+.|..|++||.+
T Consensus 20 ~~lS~~L~~qle~L~~kl~---------~m~dg~e~Va~Vl~NW~n 56 (103)
T PF08654_consen 20 RDLSADLASQLEALSEKLE---------TMADGAEAVASVLANWQN 56 (103)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhccHHHHHHHHhHHH
Confidence 3556677778888888876 567777888888888875
No 26
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.02 E-value=5.6 Score=26.90 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=13.9
Q ss_pred HHhhhhhhccccccCC
Q psy11128 197 LIGTAWVLGRAKDLGF 212 (212)
Q Consensus 197 ~~~~~~~~~~~~~~~~ 212 (212)
.+||.|+|-+||..|+
T Consensus 2 v~GTlGiL~~Ak~~Gl 17 (48)
T PF11848_consen 2 VTGTLGILLLAKRRGL 17 (48)
T ss_pred ceehHHHHHHHHHcCC
Confidence 4799999999998874
No 27
>PF14967 FAM70: FAM70 protein
Probab=39.84 E-value=52 Score=31.18 Aligned_cols=61 Identities=30% Similarity=0.453 Sum_probs=37.2
Q ss_pred Cceeeeeeccccccccc--------hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhcccccc
Q psy11128 149 NLPIYCRCCSGYECMGS--------ILGISTILKIIIYWTRLVVTLHLKYLVELIELIGTAWVLGRAKDL 210 (212)
Q Consensus 149 l~~e~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (212)
++.--||||--|.|-.. ..|.+.--.+ +-.-||.-..-.--++-|.--|-||-|||.-||.
T Consensus 157 VrsnTCYCCdLY~C~~~e~~~~YyEf~gV~SCqDV-vhLy~LLWastvLNilgLfLGIiTAAvLGaFKDm 225 (327)
T PF14967_consen 157 VRSNTCYCCDLYNCGSTEYSGSYYEFVGVSSCQDV-VHLYRLLWASTVLNILGLFLGIITAAVLGAFKDM 225 (327)
T ss_pred eecCeeEEecchhcCCCCCCCcceEEeccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 66778999999999654 2445444333 2222332222222344555557799999999986
No 28
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=38.87 E-value=61 Score=29.40 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.++|.+..|+..+.|.+++.++.+++
T Consensus 153 ~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L 187 (311)
T PRK09545 153 IARATAVAIHDKLVELMPQSKAKLDANLKDFEAQL 187 (311)
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999887764
No 29
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.62 E-value=56 Score=28.58 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 74 LKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 74 IK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
.+.+.+.|.+.|.+..|+--+.|.+++.++.+++
T Consensus 104 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l 137 (264)
T cd01020 104 MSKVANALADALVKADPDNKKYYQANAKKFVASL 137 (264)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4678899999999999988888888888886664
No 30
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=35.85 E-value=55 Score=29.35 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=31.4
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhcC
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKA 89 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~~ 89 (212)
.+.|.|++.-+.-.. ++.+.+.|..|++.|+|+|.+.+++..
T Consensus 187 ieaGad~i~i~d~~~--~~lsp~~f~ef~~P~~k~i~~~i~~~~ 228 (335)
T cd00717 187 IEAGAQAVQIFDSWA--GALSPEDFEEFVLPYLKRIIEEVKKRL 228 (335)
T ss_pred HHhCCCEEEEeCccc--ccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356788775443222 244999999999999999999998753
No 31
>KOG3415|consensus
Probab=35.34 E-value=42 Score=27.82 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhc
Q psy11128 175 IIIYWTRLVVTLHLKYLVELIELIGTAWVLG 205 (212)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (212)
=.|||.|-|+.|-|-.+--.+-|.|--|..+
T Consensus 43 DViyW~rQVi~l~lGviwGi~pL~G~l~iv~ 73 (129)
T KOG3415|consen 43 DVIYWIRQVIGLILGVIWGIIPLVGFLGIVL 73 (129)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhHHHHHH
Confidence 3689999999999999988888888777643
No 32
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=35.25 E-value=72 Score=28.07 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|.++++++.+.+
T Consensus 121 ~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L 155 (282)
T cd01017 121 LAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKL 155 (282)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 45788999999999999998888888888887664
No 33
>KOG3120|consensus
Probab=34.96 E-value=64 Score=29.65 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCCccceEEecccccccccccccCCCCceeeeeeccccccccchhh
Q psy11128 123 EYQAEHMVDLLIHSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILG 168 (212)
Q Consensus 123 smnpDGMVaLL~~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~ 168 (212)
..|..|-+.+. ||. ++--|-+|...-|-|.+|-
T Consensus 137 ~~da~G~L~v~-----------pyH--~~hsC~~CPsNmCKg~Vl~ 169 (256)
T KOG3120|consen 137 CVDASGRLLVR-----------PYH--TQHSCNLCPSNMCKGLVLD 169 (256)
T ss_pred ccCCCCcEEee-----------cCC--CCCccCcCchhhhhhHHHH
Confidence 34555777666 555 6788999999999998863
No 34
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=34.30 E-value=1.2e+02 Score=26.26 Aligned_cols=50 Identities=24% Similarity=0.507 Sum_probs=35.4
Q ss_pred ccceEEecc--cccccccccccCCCCceeeeeeccccccccchhhHHHHHHHHHHHHH
Q psy11128 126 AEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILGISTILKIIIYWTR 181 (212)
Q Consensus 126 pDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (212)
.|+||++=+ -.++-|+-.-|+.| .|-++|-=-|.|+|+|.|.+++=+..|
T Consensus 56 ~~~mViv~~I~f~S~CEHHlLPf~G------~~hVaYiP~~~ViGLSKl~RiV~~~ar 107 (180)
T TIGR00063 56 HDEMVLVRDITFTSTCEHHLVPFDG------KAHVAYIPKDKVIGLSKIARIVEFFAR 107 (180)
T ss_pred CCcEEEEeCceEEEeccccccceee------EEEEEEecCCceecHHHHHHHHHHHhc
Confidence 568987632 23566777777766 456666557899999999999866553
No 35
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=31.62 E-value=84 Score=24.32 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=35.2
Q ss_pred eeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhcCCCCcce
Q psy11128 52 IVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQF 116 (212)
Q Consensus 52 IV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~NFKDyqF 116 (212)
||+-..-.|. |-|+.+...++|+++.+ .++-|...+.|.+ ..+++++++.++=++++
T Consensus 13 VvLEp~~~Eq--flt~~Ell~~Lk~~L~~-----~~~LP~dL~~~~s-~~~qa~~Lldt~CeLei 69 (83)
T PF12095_consen 13 VVLEPGQPEQ--FLTPEELLEKLKEWLQN-----QDDLPPDLAKFSS-VEEQAQYLLDTACELEI 69 (83)
T ss_dssp EEEESSS-SE--EE-HHHHHHHHHHHHHH-----TTTS-HHHHH----HHHHHHHHHHH---EEE
T ss_pred EEecCCCCcc--cCCHHHHHHHHHHHHHc-----CCCCCHHHHhCCC-HHHHHHHHHHhceeeec
Confidence 3444444454 44899999998888877 3445888888854 46889999999999887
No 36
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=31.45 E-value=80 Score=31.08 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+.-+.|+++++++.+++
T Consensus 319 na~~~a~~Ia~~LselDP~na~~Y~~Na~ay~~eL 353 (479)
T TIGR03772 319 NAIAYVEVIRDKLIEVDPRGAQAYRSNASAYIHRL 353 (479)
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999887764
No 37
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.10 E-value=91 Score=27.81 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+.-+.|+++++.+.+++
T Consensus 125 ~~~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~L 159 (287)
T cd01137 125 NAIIYVKNIAKALSEADPANAETYQKNAAAYKAKL 159 (287)
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 35788899999999999998888988888887764
No 38
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=30.95 E-value=67 Score=29.18 Aligned_cols=43 Identities=26% Similarity=0.440 Sum_probs=31.8
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhcCh
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAP 90 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~~p 90 (212)
.+.|+|++.-+.-.. ++.+.+.|..|.+.|.|+|.+.+++..|
T Consensus 196 ~eaGad~i~i~d~~~--~~lsp~~f~ef~~P~~k~i~~~i~~~~~ 238 (346)
T PRK00115 196 IEAGAQAVQIFDSWA--GALSPADYREFVLPYMKRIVAELKREHP 238 (346)
T ss_pred HHcCCCEEEEecCcc--ccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456788775443322 2349999999999999999999987543
No 39
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=30.76 E-value=86 Score=19.92 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcChhhhHHHHHhH
Q psy11128 74 LKDYMKKLVAKLEEKAPDQIETFKTNM 100 (212)
Q Consensus 74 IK~YmKkIk~kLeE~~perVk~Fkk~A 100 (212)
.|+++|+-++-|+.+.|--+++-++.|
T Consensus 2 ~kdw~k~~~~wlkkkgpgi~kaal~aa 28 (29)
T PF07442_consen 2 WKDWLKKAGEWLKKKGPGILKAALKAA 28 (29)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHhc
Confidence 489999999999998998776655543
No 40
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=30.47 E-value=80 Score=28.25 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=29.7
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhh
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEE 87 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE 87 (212)
.+.|.|++.=+.-.-...+.+.+.|..|+..|+|+|.+.+++
T Consensus 181 ~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~ 222 (326)
T cd03307 181 LEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG 222 (326)
T ss_pred HHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 456777764444321112448999999999999999998875
No 41
>KOG1551|consensus
Probab=29.76 E-value=88 Score=29.82 Aligned_cols=61 Identities=16% Similarity=0.236 Sum_probs=44.6
Q ss_pred HhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccCCC---Cceeeeeeccccccccc
Q psy11128 98 TNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPMNG---NLPIYCRCCSGYECMGS 165 (212)
Q Consensus 98 k~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~dg---l~~e~~~~~~~~~~~~~ 165 (212)
+.+..+++-++..|-+..||--+ .||+-.++++-. +|+++|-.| |.+.-=+|-++|-=-|-
T Consensus 281 ~E~~~~Mr~vmd~~T~v~~fp~P---vdpsl~ivv~A~----~D~Yipr~gv~~lQ~~WPg~eVr~~egGH 344 (371)
T KOG1551|consen 281 KESLIFMRGVMDECTHVANFPVP---VDPSLIIVVQAK----EDAYIPRTGVRSLQEIWPGCEVRYLEGGH 344 (371)
T ss_pred HHHHHHHHHHHHhhchhhcCCCC---CCCCeEEEEEec----CCccccccCcHHHHHhCCCCEEEEeecCc
Confidence 44556667788889999999888 889988887754 899999966 33444566677655444
No 42
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.45 E-value=1e+02 Score=27.29 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|.++++++.+.+
T Consensus 109 ~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L 143 (276)
T cd01016 109 LWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEEL 143 (276)
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 45788999999999999988888888888876653
No 43
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=28.67 E-value=85 Score=28.26 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=30.6
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEK 88 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~ 88 (212)
.+.|.|++.-+.-... +.+.+.|..|++.|+|+|.+.+++.
T Consensus 190 ~eaGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~ 230 (338)
T TIGR01464 190 VKAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKKIIEEVKAR 230 (338)
T ss_pred HHcCCCEEEEECCccc--cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777654443322 3499999999999999999999864
No 44
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=28.50 E-value=43 Score=32.08 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHhcCCCCcceeeecCCCCCccceEEecccc-ccccc-------ccccC-CCCceeeeeeccccccccchhhHHHHHHH
Q psy11128 105 KELLGRFKDLQFFTVNFKEYQAEHMVDLLIHS-SVRRH-------SVIPM-NGNLPIYCRCCSGYECMGSILGISTILKI 175 (212)
Q Consensus 105 K~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~-~yreD-------gvtP~-dgl~~e~~~~~~~~~~~~~~~~~~~~~~~ 175 (212)
+..+.+|.| ||+=+-.++||.|.|-=+.|- +=+|| ...|- |+.+-... -.|+-...++.+|.|+
T Consensus 62 e~~i~r~~d--ffvI~Pv~ldP~gIv~k~~hll~t~e~~~~~~v~~~~p~~d~~~~s~~-----~~~lei~~~ln~IyKv 134 (355)
T PF07431_consen 62 ESLIDRLLD--FFVIEPVDLDPTGIVRKLKHLLRTYEDRFEKEVKRLAPNADEVEVSNI-----ETALEIARSLNMIYKV 134 (355)
T ss_pred HHHHHHHHh--heecCcCCCCchhhHHHHHHHHHhhHHHHHHHHHHhCCCCCHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 445555554 565555599999998633220 11333 22332 43332211 2345556677888888
Q ss_pred HHHH
Q psy11128 176 IIYW 179 (212)
Q Consensus 176 ~~~~ 179 (212)
+-..
T Consensus 135 vrHy 138 (355)
T PF07431_consen 135 VRHY 138 (355)
T ss_pred HHHH
Confidence 7543
No 45
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=27.22 E-value=1.4e+02 Score=18.22 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-Chhhh
Q psy11128 68 KGYTAYLKDYMKKLVAKLEEK-APDQI 93 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~kLeE~-~perV 93 (212)
+.-+.++..|...|...|.+. +|+.|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~i 28 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQI 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 456788999999999999875 57765
No 46
>KOG0188|consensus
Probab=26.12 E-value=3.5e+02 Score=28.99 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhcCCCCcceeeec---CC--CCC-ccceEEecccccccccccc
Q psy11128 71 TAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVN---FK--EYQ-AEHMVDLLIHSSVRRHSVI 144 (212)
Q Consensus 71 k~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE---~~--smn-pDGMVaLL~~~~yreDgvt 144 (212)
+.-|+.-+|++++++++.....-++|++.+.+-+|...+.-.|-+|-+=. +. -++ ||-.+-||-+
T Consensus 755 k~~~~~~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~~~~~~~~v~~~~~~~~~k~~~~~~~i~llsd--------- 825 (895)
T KOG0188|consen 755 KDEIRELLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKESNPNQPLLVHYIESSKLLKKQAPDKSIMLLSD--------- 825 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEEecchHHHHhcCCCCeeEEecc---------
Confidence 34455556666666665544556777777777777777765665553221 00 122 6656655511
Q ss_pred cCCCCceeeeeeccccccccchhhHH
Q psy11128 145 PMNGNLPIYCRCCSGYECMGSILGIS 170 (212)
Q Consensus 145 P~dgl~~e~~~~~~~~~~~~~~~~~~ 170 (212)
-+ -.-..|.||+...||---|--|
T Consensus 826 -~~-~gkv~~~c~V~~~a~~~gl~a~ 849 (895)
T KOG0188|consen 826 -DE-SGKVTCLCQVPQNAANKGLKAS 849 (895)
T ss_pred -CC-CCeEEEEEeecHHHhhccCCHH
Confidence 11 1246899999999987644433
No 47
>COG0268 RpsT Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]
Probab=25.91 E-value=2.5e+02 Score=21.87 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHH
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKE 106 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~ 106 (212)
-+++++-+|.|+|++..-++..+.|...+....|+..+.+
T Consensus 21 N~~~kS~~rT~iKk~~~ai~~gd~~~A~~~l~~a~~~idk 60 (88)
T COG0268 21 NKSRKSALRTAIKKVEAAIEAGDKEAAKAALKEAQKKIDK 60 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3578888899999998888876666666666666655544
No 48
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=25.90 E-value=48 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCcceeeecCCCCCccceE
Q psy11128 112 KDLQFFTVNFKEYQAEHMV 130 (212)
Q Consensus 112 KDyqFYtGE~~smnpDGMV 130 (212)
+++.||+=+ .|||||.+
T Consensus 82 ~~~~~~IvP--~~NPDGv~ 98 (261)
T cd06908 82 EHLVFKIVP--MLNPDGVF 98 (261)
T ss_pred HhCcEEEEe--eecCccee
Confidence 567899988 79999988
No 49
>PLN02433 uroporphyrinogen decarboxylase
Probab=25.74 E-value=96 Score=28.30 Aligned_cols=42 Identities=14% Similarity=0.358 Sum_probs=30.3
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhcC
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKA 89 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~~ 89 (212)
.+.|.|++.-+.-.. ++.+.+.|..|...|+|+|.+++++..
T Consensus 189 ieaGa~~i~i~d~~~--~~lsp~~f~ef~~P~~k~i~~~i~~~~ 230 (345)
T PLN02433 189 IDAGAQVVQIFDSWA--GHLSPVDFEEFSKPYLEKIVDEVKARH 230 (345)
T ss_pred HHcCCCEEEEecCcc--ccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677663333222 234999999999999999999998753
No 50
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=25.05 E-value=1.2e+02 Score=20.75 Aligned_cols=39 Identities=10% Similarity=0.278 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHH-hhcChhhhHHHHHhHHHHHHH
Q psy11128 68 KGYTAYLKDYMKKLVAKL-EEKAPDQIETFKTNMNKVMKE 106 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~kL-eE~~perVk~Fkk~A~~~VK~ 106 (212)
-.+..|++.+++.-=.+- ..++|++++.+.+.|...+.-
T Consensus 20 ~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~ 59 (61)
T PF13232_consen 20 YNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELEL 59 (61)
T ss_pred cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345566666644422222 235889999999998877653
No 51
>KOG2582|consensus
Probab=24.99 E-value=2.6e+02 Score=27.56 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=38.9
Q ss_pred ChhhhHH--HHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccC
Q psy11128 89 APDQIET--FKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM 146 (212)
Q Consensus 89 ~perVk~--Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~ 146 (212)
+=+.++. |.+.+|+.-|.|+-.|+|=+-|+-- | |||.+.+. -|+-.-|.
T Consensus 319 sL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~i--N----G~v~f~~n---~e~~~Spe 369 (422)
T KOG2582|consen 319 SLSDIASRVQLASAQEVEKYILQMIEDGEIFASI--N----GMVFFTDN---PEKYNSPE 369 (422)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHhccCceEEEe--c----ceEEEecC---cccCCCHH
Confidence 4456766 8999999999999999999999954 2 99998854 55555554
No 52
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=24.22 E-value=1e+02 Score=28.67 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=30.0
Q ss_pred cccccc--eeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy11128 46 VESGVD--IVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEK 88 (212)
Q Consensus 46 v~svVD--IV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~ 88 (212)
.+.|.| |+..--.... .+.+.+.|..|.+.|+|+|.+.+++.
T Consensus 224 ieaGa~~~i~i~~~~s~~-~~lsp~~f~ef~~P~~k~i~~~i~~~ 267 (378)
T cd03308 224 APAPYPGPVFTPIPLHLP-PFLRPKQFEKFYWPSFKKVVEGLAAR 267 (378)
T ss_pred HHhCCCCceEEEeccccc-CccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666 4544333333 35599999999999999999999753
No 53
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=23.79 E-value=1.4e+02 Score=28.24 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=28.8
Q ss_pred ceeeeeeccccccccchhhHHHHHH--HHHHHHHHHHHHh-HHHHHHHHHHHhhhhhhccc
Q psy11128 150 LPIYCRCCSGYECMGSILGISTILK--IIIYWTRLVVTLH-LKYLVELIELIGTAWVLGRA 207 (212)
Q Consensus 150 ~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 207 (212)
.+..|++|.+|.- --|--+++ =+..|+ | .++| |.|+.++++.|-.|..-|+-
T Consensus 298 ~~C~C~tC~~~tr----aYLhHL~~~~E~l~~~-L-Lt~HNl~~~~~l~~~iR~aI~~g~~ 352 (368)
T TIGR00430 298 EECDCYTCKNYSR----AYLRHLIRCNELLGAR-L-ATLHNLHFYLRLMEKIRQAILEDRF 352 (368)
T ss_pred CCCCCccccccCH----HHHHhhhhcchHHHHH-H-HHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 4667888876532 11222221 112332 2 3444 77888888888777666553
No 54
>PF14679 FANCI_HD1: FANCI helical domain 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=23.75 E-value=18 Score=27.82 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.5
Q ss_pred hhhHHHHHhHHHHHHH-HhcCCCCcceeee
Q psy11128 91 DQIETFKTNMNKVMKE-LLGRFKDLQFFTV 119 (212)
Q Consensus 91 erVk~Fkk~A~~~VK~-IL~NFKDyqFYtG 119 (212)
-|+..|+..+.+++|. |+.+|+|+|+-.|
T Consensus 33 arI~Rfeeqvfd~Lk~~i~k~~kd~~~~~~ 62 (87)
T PF14679_consen 33 ARIQRFEEQVFDFLKAAIVKSFKDDQKQQG 62 (87)
T ss_dssp TTSGGGHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4778899999999996 7889999998665
No 55
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=22.42 E-value=1.3e+02 Score=26.89 Aligned_cols=42 Identities=14% Similarity=0.348 Sum_probs=29.4
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhh
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEE 87 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE 87 (212)
.+.|+|++.=+.-.-...+.+.+.|..|+..|+|+|.+.+++
T Consensus 190 ~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~ 231 (339)
T PRK06252 190 LEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKG 231 (339)
T ss_pred HHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 345777664443221112448999999999999999998875
No 56
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=22.23 E-value=1.5e+02 Score=27.34 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=30.5
Q ss_pred ccceeeccc---cccccCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy11128 49 GVDIVLNHR---LCETFAFGDKKGYTAYLKDYMKKLVAKLEEK 88 (212)
Q Consensus 49 vVDIV~nhr---LqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~ 88 (212)
|+|++.=|. -|.. .|.+.+.|..|++.|+|+|.+.+++.
T Consensus 169 Gad~I~i~Ddwa~~~~-~~LSpe~f~efv~P~~krIi~~ik~~ 210 (321)
T cd03309 169 EPDLLVYHDDLGSQKG-SFISPATFREFILPRMQRIFDFLRSN 210 (321)
T ss_pred CCCEEEEeCCCccccC-CccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 788777655 2322 35599999999999999999999864
No 57
>PF11738 DUF3298: Protein of unknown function (DUF3298); InterPro: IPR021729 This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed. ; PDB: 2HHI_A 3S5T_A 3CYG_B.
Probab=21.93 E-value=54 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.475 Sum_probs=13.9
Q ss_pred CcceeeecCCCCCccceEEecccccccccccccC-CC
Q psy11128 113 DLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM-NG 148 (212)
Q Consensus 113 DyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~-dg 148 (212)
+-.||..+ +|++ ++ |-...+.|| .|
T Consensus 43 ~~~f~l~~------~gl~-~~----f~~Yeiapya~G 68 (78)
T PF11738_consen 43 SQNFYLTD------DGLV-FY----FNPYEIAPYAAG 68 (78)
T ss_dssp CSSEEEES------SEEE-EE----E-TTSSS-GGG-
T ss_pred CCCEEEEC------CEEE-EE----ECCccccCCCCC
Confidence 66777754 5744 44 235778888 55
No 58
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=21.90 E-value=2.2e+02 Score=22.24 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=2.5
Q ss_pred cccccc
Q psy11128 56 HRLCET 61 (212)
Q Consensus 56 hrLqEt 61 (212)
-|++..
T Consensus 32 KR~~~m 37 (93)
T PF06518_consen 32 KRLKKM 37 (93)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 344443
No 59
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=21.67 E-value=88 Score=22.81 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcChh
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEEKAPD 91 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE~~pe 91 (212)
-.+|-..+|+.|+.|.+.|++..|+
T Consensus 45 G~DYH~vlk~~L~~l~~~i~~~~~~ 69 (78)
T PF08331_consen 45 GRDYHKVLKKKLEQLAEWIRELGPD 69 (78)
T ss_pred cCChHHHHHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999887654
No 60
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=21.18 E-value=3e+02 Score=20.74 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHH
Q psy11128 66 DKKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMK 105 (212)
Q Consensus 66 dKK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK 105 (212)
++-.|..|=|.--.++++|+-+.+|..++....+=..|..
T Consensus 7 se~tFtEyKKrL~e~l~~k~P~at~~~l~~lve~RsdFAS 46 (68)
T PF09164_consen 7 SENTFTEYKKRLAERLRAKLPDATPTELKELVEKRSDFAS 46 (68)
T ss_dssp TTS-HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhHHH
Confidence 5667777777777788888877788777776665555543
No 61
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=20.67 E-value=3.2e+02 Score=19.31 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHH----------------HHhhcChhhhHHHHHhHHHHHHHHhcCCCCcce
Q psy11128 68 KGYTAYLKDYMKKLVA----------------KLEEKAPDQIETFKTNMNKVMKELLGRFKDLQF 116 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~----------------kLeE~~perVk~Fkk~A~~~VK~IL~NFKDyqF 116 (212)
.+|.-|.+++.+.|++ ....-++++-+.|...|...-..-...+.+|.|
T Consensus 7 naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yky 71 (77)
T cd01389 7 NAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESPEVKAYYKELAEEEKERHAREYPDYKY 71 (77)
T ss_pred cHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence 3567777777666654 233446777788988888776666777888876
No 62
>PLN00108 unknown protein; Provisional
Probab=20.61 E-value=68 Score=29.35 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=20.3
Q ss_pred HHHHhcCCCCcceeeecCCCCCccceEEeccccccccccc
Q psy11128 104 MKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSV 143 (212)
Q Consensus 104 VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgv 143 (212)
...|+.+|+||+| |+ .--+.. -|.--.++.+||+
T Consensus 212 A~~Il~~f~d~~F--G~---~~i~~v-hls~r~s~~~dGy 245 (257)
T PLN00108 212 AREIHKEFENKDW--GT---YLIREA-HISQRYKYDPNGY 245 (257)
T ss_pred HHHHHHhccCccc--ce---EEecEE-EEEeecccCCCCC
Confidence 3579999999999 65 223322 3322224666665
No 63
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=20.37 E-value=98 Score=27.52 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=17.0
Q ss_pred HHHHhcCCCCcceeeecCCCCCccceE
Q psy11128 104 MKELLGRFKDLQFFTVNFKEYQAEHMV 130 (212)
Q Consensus 104 VK~IL~NFKDyqFYtGE~~smnpDGMV 130 (212)
++.++. ++.|++=+ .+||||++
T Consensus 79 ~~~Ll~---~~~~~iiP--m~NPDG~~ 100 (258)
T cd06235 79 AQYLRE---NFIFKIIP--MLNPDGVI 100 (258)
T ss_pred HHHHHh---ccEEEEEc--ccccccee
Confidence 455554 58899988 79999986
Done!