Query psy11128
Match_columns 212
No_of_seqs 122 out of 342
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:43:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6q_A TCTP, P23FYP, translati 100.0 7E-61 2.4E-65 400.6 12.2 142 5-154 21-168 (168)
2 1yz1_A Translationally control 100.0 5.6E-60 1.9E-64 396.8 6.9 140 8-154 27-174 (174)
3 1txj_A Translationally control 100.0 2.3E-59 7.7E-64 392.4 7.4 139 6-154 28-171 (171)
4 2kwb_A TCTP, translationally-c 100.0 8.7E-58 3E-62 387.8 4.8 145 5-155 21-182 (189)
5 1pq4_A Periplasmic binding pro 55.4 18 0.0006 31.0 5.4 35 73-107 140-174 (291)
6 2prs_A High-affinity zinc upta 54.0 19 0.00066 30.4 5.4 35 73-107 124-158 (284)
7 2vqe_T 30S ribosomal protein S 53.4 33 0.0011 26.4 6.1 41 67-107 26-66 (106)
8 3cx3_A Lipoprotein; zinc-bindi 52.9 20 0.00069 30.4 5.3 35 73-107 127-161 (284)
9 3r8n_T 30S ribosomal protein S 51.6 38 0.0013 24.9 6.0 40 67-106 19-58 (85)
10 2o1e_A YCDH; alpha-beta protei 51.5 22 0.00074 30.9 5.4 35 73-107 140-174 (312)
11 3gi1_A LBP, laminin-binding pr 51.5 22 0.00076 30.3 5.4 35 73-107 129-163 (286)
12 3mfq_A TROA, high-affinity zin 50.8 23 0.00078 30.2 5.3 37 73-109 111-147 (282)
13 3hh8_A Metal ABC transporter s 49.2 25 0.00086 30.2 5.4 36 73-108 131-166 (294)
14 1toa_A Tromp-1, protein (perip 48.5 26 0.00088 30.5 5.4 36 73-108 145-180 (313)
15 3ujp_A Mn transporter subunit; 47.2 28 0.00094 30.3 5.4 37 73-109 138-174 (307)
16 1v0d_A DNA fragmentation facto 46.6 26 0.00089 31.9 5.2 51 60-112 149-204 (329)
17 1xvl_A Mn transporter, MNTC pr 46.1 29 0.001 30.3 5.4 36 73-108 152-187 (321)
18 3evy_A Putative type I restric 40.4 56 0.0019 27.6 6.1 48 68-116 11-71 (239)
19 1is8_A GTP cyclohydrolase I; e 39.8 19 0.00063 31.3 3.0 49 126-180 106-156 (230)
20 1g1e_B SIN3A; four-helix bundl 39.5 33 0.0011 25.0 4.0 33 72-105 11-43 (89)
21 1e91_A Paired amphipathic heli 33.2 39 0.0013 24.4 3.5 31 73-104 9-39 (85)
22 2czy_A Paired amphipathic heli 32.1 44 0.0015 23.7 3.5 29 74-103 7-35 (77)
23 2cr7_A Paired amphipathic heli 31.4 41 0.0014 24.0 3.3 27 76-103 15-41 (80)
24 4ay7_A Methylcobalamin\: coenz 29.6 42 0.0014 28.9 3.7 42 46-87 200-241 (348)
25 2l5b_A Activator of apoptosis 28.9 36 0.0012 21.0 2.2 24 177-208 7-30 (32)
26 2f05_A Paired amphipathic heli 27.0 69 0.0023 24.2 4.0 30 73-103 9-38 (105)
27 1wqb_A Aptotoxin VII; spider'S 26.8 17 0.00058 22.4 0.4 11 155-165 17-27 (32)
28 2xrh_A Protein HP0721; unknown 26.4 1E+02 0.0036 23.5 4.9 35 76-110 33-67 (100)
29 2eja_A URO-D, UPD, uroporphyri 25.5 58 0.002 27.8 3.8 40 47-88 190-229 (338)
30 3bbn_T Ribosomal protein S20; 24.5 72 0.0025 27.2 4.0 39 67-105 104-151 (202)
31 1r3s_A URO-D, uroporphyrinogen 23.3 53 0.0018 28.6 3.2 40 47-88 208-248 (367)
32 4exq_A UPD, URO-D, uroporphyri 20.8 37 0.0013 30.0 1.7 43 46-90 207-249 (368)
33 1j93_A UROD, uroporphyrinogen 20.6 94 0.0032 26.6 4.1 40 47-88 204-243 (353)
No 1
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Probab=100.00 E-value=7e-61 Score=400.57 Aligned_cols=142 Identities=35% Similarity=0.586 Sum_probs=137.3
Q ss_pred eEeCCEEEEEEEEEEEe-ecCccccccCCCCCCccccccccccccccceeeccccccccCCCChHHHHHHHHHHHHHHHH
Q psy11128 5 IHVQLLLFIFFSQTVVR-KVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVA 83 (212)
Q Consensus 5 ~~vdgv~yEVegK~Vtk-~~gnidLiGaNaSAEe~dEg~d~tv~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~ 83 (212)
++++|++|||+||+|+| +++|+|| |||||||+++|++|+++++|+|||+||||||| +| |||+|++|||+|||+|++
T Consensus 21 k~vd~~~yEV~gk~v~~~~~~didi-GaN~SaE~~~eg~d~~~~~vvdiV~~~rLqet-~f-dKk~y~~yiK~YmK~v~~ 97 (168)
T 1h6q_A 21 KEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKA 97 (168)
T ss_dssp EECSSSEEEEECCEEEEECCCCSTT-SCCCCCCSCSCSSCCCEEEEEHHHHHTTCEEC-CC-CHHHHHHHHHHHHHHHHH
T ss_pred EeeCCEEEEEeeEEEEEccCCcccc-ccCccccccccccCCceEEeeeeeEecccccC-Cc-CHHHHHHHHHHHHHHHHH
Confidence 45689999999999999 9999995 99999999999999999999999999999999 68 999999999999999999
Q ss_pred HHhhcChhhhHHHHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccC-----CCCceeee
Q psy11128 84 KLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM-----NGNLPIYC 154 (212)
Q Consensus 84 kLeE~~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~-----dgl~~e~~ 154 (212)
||+|++||||++|+++||++||+||+||||||||+|| ||||||||||| +|||||+||| +||++|||
T Consensus 98 kLee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GE--smd~dgmvvl~---~Yredg~tP~~~f~K~GL~eeK~ 168 (168)
T 1h6q_A 98 RLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGE--SMDPDAMVVLM---NYREDGITPYMIFFKDGLVSEKF 168 (168)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHHHHHTTTTTTCCEECT--TCCTTSCCEEE---EECSSSSCEEEEEESTTCEEECC
T ss_pred HHhhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccC--CCCCCceEEEE---EecCCCCCeEEEEEcccceeecC
Confidence 9999999999999999999999999999999999999 89999999999 6799999999 99999998
No 2
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Probab=100.00 E-value=5.6e-60 Score=396.83 Aligned_cols=140 Identities=39% Similarity=0.630 Sum_probs=112.6
Q ss_pred CCEEEEEEEEEEEeecCccc--cccCCCCCCc-cccccccccccccceeeccccccccCCCChHHHHHHHHHHHHHHHHH
Q psy11128 8 QLLLFIFFSQTVVRKVGDVN--IDGFNPSAEE-ADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAK 84 (212)
Q Consensus 8 dgv~yEVegK~Vtk~~gnid--LiGaNaSAEe-~dEg~d~tv~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~k 84 (212)
+|++|||+||+|+|+++|+| |||||||||+ ++|++++++++|||||+||||||| +| |||+|++|||+|||+|++|
T Consensus 27 dg~~yEV~gk~v~~~~g~idd~liGaN~SaE~~~~eg~d~~~~~~vdiV~~~rLqet-~f-dKk~y~~yiK~YmK~v~~k 104 (174)
T 1yz1_A 27 DGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET-SF-TKEAYKKYIKDYMKSIKGK 104 (174)
T ss_dssp GGTEEEEECCBCCC----------------------------CCCBHHHHHTTCEEE-CC-CHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeeEEEEecCCCccccccccCcccccccccccCcceEEcceeEeecccccc-Cc-CHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999997 7899999997 468999999999999999999999 68 9999999999999999999
Q ss_pred HhhcChhhhHHHHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccC-----CCCceeee
Q psy11128 85 LEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM-----NGNLPIYC 154 (212)
Q Consensus 85 LeE~~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~-----dgl~~e~~ 154 (212)
|||++||||++|+++||++||+||+||||||||||| ||||||||||| +|||||+||| +||++|||
T Consensus 105 Lee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GE--Smd~dgmvvl~---~Yredg~tP~~~f~K~GL~eeK~ 174 (174)
T 1yz1_A 105 LEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGE--NMNPDGMVALL---DYREDGVTPYMIFFKDGLEMEKC 174 (174)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECT--TCCTTSCEEEE---EECTTSSCEEEEEEGGGEEEEEC
T ss_pred HhhhCHHHHHHHHHHHHHHHHHHHhhCcCccEeccC--CCCCCccEEEE---EccCCCcCeEEEEEcccceeecC
Confidence 999999999999999999999999999999999999 89999999999 6799999999 99999998
No 3
>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB: 3p3k_A
Probab=100.00 E-value=2.3e-59 Score=392.38 Aligned_cols=139 Identities=28% Similarity=0.458 Sum_probs=120.8
Q ss_pred EeCCEEEEEEEEEEEeecCccccccCCCCCCccccccccccccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHH
Q psy11128 6 HVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKL 85 (212)
Q Consensus 6 ~vdgv~yEVegK~Vtk~~gnidLiGaNaSAEe~dEg~d~tv~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kL 85 (212)
+++|++|||+||+|+|+++|+|| |||||||+++|++| +++|+|||+||||||| +| |||+|++|||+|||+|++||
T Consensus 28 e~~~~~yEV~gk~v~~~~~~idi-GaN~saE~~~e~~d--~~~vvdIV~~~rL~et-~f-~Kk~y~~yiK~YmK~i~~kL 102 (171)
T 1txj_A 28 DFREIAFEVKSNKRIKGNDDYGI-ADNSEEAVDGMGAD--VEQVIDIVDSFQLTST-SL-SKKEYSVYIKNYMQKILKYL 102 (171)
T ss_dssp GGTTTEEEEECCEEESCC---------------CCCCS--SCEEEHHHHHHTCEEE-CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEeEEEEECCCcccc-cCCccccccccCcc--eeecceEEEecceeec-CC-CHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999995 99999999889888 8999999999999999 68 99999999999999999999
Q ss_pred hhcChhhhHHHHHhHHHHHHHHhcCCCCcceeeecCCCCCccceEEecccccccccccccC-----CCCceeee
Q psy11128 86 EEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIPM-----NGNLPIYC 154 (212)
Q Consensus 86 eE~~perVk~Fkk~A~~~VK~IL~NFKDyqFYtGE~~smnpDGMVaLL~~~~yreDgvtP~-----dgl~~e~~ 154 (212)
+|++||||++|+++||++||+||+||||||||+|| ||||||||||+ +|||||+||| +||++|||
T Consensus 103 ee~~pe~v~~Fk~~a~~~vK~il~~fkd~qFf~GE--Smd~dgmvvl~---~Yredg~tP~~~f~K~GL~eeK~ 171 (171)
T 1txj_A 103 EEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGE--SLDMDAGLTYS---YYKGEEVTPRFVYISDGLYEEKF 171 (171)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHHHHTGGGCEEEECT--TCCTTSCCEEE---ECCTTCSSCEEEEEGGGEEEEEC
T ss_pred hhhChHHHHHHHHHHHHHHHHHHhhCcCccEeccC--CCCCCceEEEE---EecCCCCCeEEEEEcccceeecC
Confidence 99999999999999999999999999999999999 89999999999 6799999999 99999998
No 4
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural genomics, northeast structural genomics consortiu PSI-2; NMR {Caenorhabditis elegans} PDB: 2loy_A
Probab=100.00 E-value=8.7e-58 Score=387.81 Aligned_cols=145 Identities=36% Similarity=0.609 Sum_probs=138.4
Q ss_pred eEeCCEEEEEEEEEEEeecCccccccCCCCCCc--cccccccccccccceeeccccccccCCC-ChHHHHHHHHHHHHHH
Q psy11128 5 IHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEE--ADEGTDEAVESGVDIVLNHRLCETFAFG-DKKGYTAYLKDYMKKL 81 (212)
Q Consensus 5 ~~vdgv~yEVegK~Vtk~~gnidLiGaNaSAEe--~dEg~d~tv~svVDIV~nhrLqEt~~F~-dKK~Yk~YIK~YmKkI 81 (212)
++++|++|||+||+|+|+++|+|++|||||||+ ++|++|+++++|||||+|||||||+ |+ |||+|++|||+|||+|
T Consensus 21 k~vd~~~yEV~gK~v~~~~gdidl~GaN~SaE~~~~~eg~d~~~~~vvDIV~n~rLqet~-f~~dKk~y~~yiK~YmK~v 99 (189)
T 2kwb_A 21 KLVDDLVYEFKGKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMN-CYEDASMFKAYIKKFMKNV 99 (189)
T ss_dssp EEETTTEEEEECCEECCBTTBCCCCCCSCCCSSCCSSCCCGGGCSSEEHHHHTTTEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred EeeCCEEEEEeeEEEEECCccccccccCccccccccccccCCccEEcceeEEecceeecc-cccCHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999998 8999999999999999999999995 43 8999999999999999
Q ss_pred HHHHhhcChhh--hHHHHHhHHHHHHHHhc--CCCCcceeeecCCCCCc---cceEEecccccccc-cc-cccC-----C
Q psy11128 82 VAKLEEKAPDQ--IETFKTNMNKVMKELLG--RFKDLQFFTVNFKEYQA---EHMVDLLIHSSVRR-HS-VIPM-----N 147 (212)
Q Consensus 82 k~kLeE~~per--Vk~Fkk~A~~~VK~IL~--NFKDyqFYtGE~~smnp---DGMVaLL~~~~yre-Dg-vtP~-----d 147 (212)
++||+|++|+| |++|+++||++||+||+ ||||||||||| |||| ||||||| +||| || +||| +
T Consensus 100 ~~kLee~~pe~e~v~~Fk~~a~~~vK~iL~k~~Fkd~qFf~GE--Smd~~~~dGmv~l~---~Yre~dg~~tP~~~ffK~ 174 (189)
T 2kwb_A 100 IDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGE--RAAEGAENGQVAII---EYRDVDGTEVPTLMLVKE 174 (189)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHHHHTCHHHHTTCEEEEEH--HHHHHTSCCCEEEE---EEEEETTEEEEEEEEETT
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHhccccccCccEeccC--CCCCCCCCceEEEE---EEEcCCCCcCeEEEEEcc
Confidence 99999999999 99999999999999999 99999999999 8999 9999999 6799 99 9999 9
Q ss_pred CCceeeee
Q psy11128 148 GNLPIYCR 155 (212)
Q Consensus 148 gl~~e~~~ 155 (212)
||++|||-
T Consensus 175 GL~eeK~~ 182 (189)
T 2kwb_A 175 AIIEEKCL 182 (189)
T ss_dssp TEEEECCC
T ss_pred CceEEEee
Confidence 99999984
No 5
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=55.36 E-value=18 Score=31.00 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++
T Consensus 140 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L 174 (291)
T 1pq4_A 140 LVKRQATTIAKELAELDPDNRDQYEANLAAFLAEL 174 (291)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999998887754
No 6
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=54.05 E-value=19 Score=30.44 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++
T Consensus 124 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L 158 (284)
T 2prs_A 124 IARATAVAIHGKLVELMPQSRAKLDANLKDFEAQL 158 (284)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 36678999999999999999999999998887754
No 7
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=53.41 E-value=33 Score=26.36 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
-++|++-+|.++|++.+-+++.+.|.+......|+..+.+.
T Consensus 26 Nka~kS~~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~iDka 66 (106)
T 2vqe_T 26 NKAKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKA 66 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999888888777767776666543
No 8
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=52.93 E-value=20 Score=30.39 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++
T Consensus 127 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L 161 (284)
T 3cx3_A 127 KAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKA 161 (284)
T ss_dssp HHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999998887754
No 9
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=51.59 E-value=38 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHH
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKE 106 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~ 106 (212)
-+++++-+|.++|++.+-++..+.|........|+..+.+
T Consensus 19 N~~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 19 NASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999988877776666666665544
No 10
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=51.51 E-value=22 Score=30.86 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++
T Consensus 140 n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L 174 (312)
T 2o1e_A 140 LAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKL 174 (312)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHH
Confidence 36688999999999999999999999998887754
No 11
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=51.49 E-value=22 Score=30.35 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~I 107 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++
T Consensus 129 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L 163 (286)
T 3gi1_A 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEA 163 (286)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999887764
No 12
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=50.78 E-value=23 Score=30.20 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhc
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLG 109 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~ 109 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++-+
T Consensus 111 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ 147 (282)
T 3mfq_A 111 LYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDD 147 (282)
T ss_dssp HHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999887643
No 13
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=49.24 E-value=25 Score=30.20 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHh
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELL 108 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL 108 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++-
T Consensus 131 ~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~ 166 (294)
T 3hh8_A 131 NGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLE 166 (294)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999888753
No 14
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=48.46 E-value=26 Score=30.45 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHh
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELL 108 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL 108 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++-
T Consensus 145 n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~ 180 (313)
T 1toa_A 145 LWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLD 180 (313)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999998877643
No 15
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=47.21 E-value=28 Score=30.34 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhc
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLG 109 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~ 109 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++-+
T Consensus 138 n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~ 174 (307)
T 3ujp_A 138 NALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKA 174 (307)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999998887543
No 16
>1v0d_A DNA fragmentation factor 40 kDa subunit; hydrolase, nuclease, caspase-activated DNAse; HET: DNA; 2.6A {Mus musculus} SCOP: d.4.1.7 PDB: 1f2r_C 1c9f_A 1ibx_A*
Probab=46.62 E-value=26 Score=31.90 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=34.4
Q ss_pred cccCCCChHHHHHH-----HHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhcCCC
Q psy11128 60 ETFAFGDKKGYTAY-----LKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFK 112 (212)
Q Consensus 60 Et~~F~dKK~Yk~Y-----IK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~NFK 112 (212)
|+ .|.||.+|+.| |.+|++++++.++..+|.--..+.+-+ +.++..|..++
T Consensus 149 e~-~f~tKe~yM~~~~q~RIRgY~~k~~~~~~~~~~~ar~~~~~~~-e~f~~~L~~~~ 204 (329)
T 1v0d_A 149 ES-RFRNKSGYLRYSCESRIRGYLREVSAYTSMVDEAAQEEYLRVL-GSMCQKLKSVQ 204 (329)
T ss_dssp CT-TCCBHHHHHHHHHHHHHHHHHHHHHTTGGGSCTTTHHHHHHHH-HHHHHHHHHTG
T ss_pred cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHhcCC
Confidence 55 57799999987 999999999999876554334443333 34455554433
No 17
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=46.06 E-value=29 Score=30.26 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHh
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELL 108 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL 108 (212)
..+.+.+.|.+.|.+..|+..+.|+++++++.+++-
T Consensus 152 n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~ 187 (321)
T 1xvl_A 152 NALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLK 187 (321)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999887654
No 18
>3evy_A Putative type I restriction enzyme R protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.95A {Bacteroides fragilis nctc 9343}
Probab=40.36 E-value=56 Score=27.65 Aligned_cols=48 Identities=6% Similarity=0.183 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--Chh---------hhHHHHHhHHHHHH--HHhcCCCCcce
Q psy11128 68 KGYTAYLKDYMKKLVAKLEEK--APD---------QIETFKTNMNKVMK--ELLGRFKDLQF 116 (212)
Q Consensus 68 K~Yk~YIK~YmKkIk~kLeE~--~pe---------rVk~Fkk~A~~~VK--~IL~NFKDyqF 116 (212)
++|..|+++|-+++.+ |.+. .|+ .-+.|.+..+++.+ .+|..|++|.+
T Consensus 11 ~~y~e~~~~f~~av~~-L~~~~p~p~~i~~l~~e~~k~~Fvk~F~e~~r~~~~L~~Ydef~~ 71 (239)
T 3evy_A 11 KPYEKLVERFNEMAAE-FLSYFPTVKSVGNLESELDKRRFVILFRAMLRLRNEVKGYNEFDA 71 (239)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHCCSHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHTTSTTCCG
T ss_pred CCHHHHHHHHHHHHHH-HHHhCCChhhcccCCCHHHHHHHHHHHHHHHHHHHHHhcccccCh
Confidence 4788999998877654 4332 333 24578888888877 58999999755
No 19
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=39.82 E-value=19 Score=31.26 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=34.7
Q ss_pred ccceEEecc--cccccccccccCCCCceeeeeeccccccccchhhHHHHHHHHHHHH
Q psy11128 126 AEHMVDLLI--HSSVRRHSVIPMNGNLPIYCRCCSGYECMGSILGISTILKIIIYWT 180 (212)
Q Consensus 126 pDGMVaLL~--~~~yreDgvtP~dgl~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (212)
-|+||.+-+ -.+.-|+-..|+.| .|-++|---|.++|+|-|-+|+=+..
T Consensus 106 ~~emVivkdI~f~S~CEHHllPf~G------kahVaYiP~gkViGLSKlaRiVd~fa 156 (230)
T 1is8_A 106 HDEMVIVKDIDMFSMCEHHLVPFVG------RVHIGYLPNKQVLGLSKLARIVEIYS 156 (230)
T ss_dssp ECSCEEEEEEEEEEEETTTCCEEEE------EEEEEEECSEECCCHHHHHHHHHHHH
T ss_pred CCceEEEeCCcEEEecCcCcCceee------EEEEEEcCCCeeccHHHHHHHHHHHh
Confidence 467887632 12444556656655 67788888999999999999886654
No 20
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=39.48 E-value=33 Score=25.04 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHhHHHHHH
Q psy11128 72 AYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMK 105 (212)
Q Consensus 72 ~YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~VK 105 (212)
..-..|+++||++.+. +|+.-+.|..-...+-+
T Consensus 11 ~~A~~YvnkVK~rF~~-~p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 11 NHAINYVNKIKNRFQG-QPDIYKAFLEILHTYQK 43 (89)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc-ChHHHHHHHHHHHHHHh
Confidence 3456899999999987 79988888776666544
No 21
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=33.22 E-value=39 Score=24.42 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVM 104 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~V 104 (212)
.-..|+++||.+.+. +|+.-+.|..-...+-
T Consensus 9 ~A~~yv~kVK~rF~~-~p~~Y~~FL~il~~yk 39 (85)
T 1e91_A 9 NAISYVNKIKTRFLD-HPEIYRSFLEILHTYQ 39 (85)
T ss_dssp HHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHH
Confidence 445899999999987 7988888876655543
No 22
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=32.11 E-value=44 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhcChhhhHHHHHhHHHH
Q psy11128 74 LKDYMKKLVAKLEEKAPDQIETFKTNMNKV 103 (212)
Q Consensus 74 IK~YmKkIk~kLeE~~perVk~Fkk~A~~~ 103 (212)
-..|+++||++.+. +|+.-+.|..-...+
T Consensus 7 A~~yl~~VK~~F~~-~p~~Y~~FL~im~~~ 35 (77)
T 2czy_A 7 ALTYLDQVKIRFGS-DPATYNGFLEIMKEF 35 (77)
T ss_dssp HHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc-ChHHHHHHHHHHHHH
Confidence 35899999999985 688877776655433
No 23
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=31.42 E-value=41 Score=24.03 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcChhhhHHHHHhHHHH
Q psy11128 76 DYMKKLVAKLEEKAPDQIETFKTNMNKV 103 (212)
Q Consensus 76 ~YmKkIk~kLeE~~perVk~Fkk~A~~~ 103 (212)
.|+++||++.+. +|+.-+.|..-...+
T Consensus 15 ~yl~~VK~rF~~-~p~~Y~~FL~im~~f 41 (80)
T 2cr7_A 15 TYLDQVKIRFGS-DPATYNGFLEIMKEF 41 (80)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-ChHHHHHHHHHHHHH
Confidence 788999999985 688877776655443
No 24
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=29.55 E-value=42 Score=28.93 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=29.7
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhh
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEE 87 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE 87 (212)
.+.|.|+|.=|.-.-++.+.+.+.|..|++.|+|+|.+.++.
T Consensus 200 i~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~ 241 (348)
T 4ay7_A 200 VEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNS 241 (348)
T ss_dssp HHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccC
Confidence 346677765554322222348999999999999999988853
No 25
>2l5b_A Activator of apoptosis harakiri; BCL-2, BH3-only, transmembrane domain; NMR {Synthetic}
Probab=28.86 E-value=36 Score=21.02 Aligned_cols=24 Identities=38% Similarity=0.865 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhhcccc
Q psy11128 177 IYWTRLVVTLHLKYLVELIELIGTAWVLGRAK 208 (212)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (212)
-||.-|-..-|..-| .||.|||-.
T Consensus 7 ~yw~wlcaaa~vaal--------aawll~rrn 30 (32)
T 2l5b_A 7 TYWPWLCAAAQVAAL--------AAWLLGRRN 30 (32)
T ss_dssp CCHHHHHHHHHHHHH--------HHHHTTCCC
T ss_pred cchHHHHHHHHHHHH--------HHHHHhccc
Confidence 478888777776544 589999853
No 26
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=26.95 E-value=69 Score=24.23 Aligned_cols=30 Identities=13% Similarity=0.327 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHhHHHH
Q psy11128 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKV 103 (212)
Q Consensus 73 YIK~YmKkIk~kLeE~~perVk~Fkk~A~~~ 103 (212)
.-..|+++||.+.+. .|+.-+.|..-...+
T Consensus 9 dA~~YvnkVK~rF~d-~p~vY~~FL~IL~~y 38 (105)
T 2f05_A 9 NAISYVNKIKTRFLD-HPEIYRSFLEILHTY 38 (105)
T ss_dssp HHHHHHHHHHHHTTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-ChHHHHHHHHHHHHH
Confidence 345899999999987 788777776544433
No 27
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=26.83 E-value=17 Score=22.39 Aligned_cols=11 Identities=64% Similarity=1.494 Sum_probs=9.6
Q ss_pred eeccccccccc
Q psy11128 155 RCCSGYECMGS 165 (212)
Q Consensus 155 ~~~~~~~~~~~ 165 (212)
.|||+-.|-||
T Consensus 17 pccsglkcdgs 27 (32)
T 1wqb_A 17 PCCSGLKCDGS 27 (32)
T ss_dssp CBCTTCEESSS
T ss_pred ccccCccccCc
Confidence 59999999887
No 28
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=26.36 E-value=1e+02 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhcChhhhHHHHHhHHHHHHHHhcC
Q psy11128 76 DYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGR 110 (212)
Q Consensus 76 ~YmKkIk~kLeE~~perVk~Fkk~A~~~VK~IL~N 110 (212)
+|-+.|+.+++.-++++.+.|.++.++...+-+++
T Consensus 33 dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~k 67 (100)
T 2xrh_A 33 DYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDK 67 (100)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666666666666666666655554443
No 29
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=25.49 E-value=58 Score=27.81 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=30.0
Q ss_pred ccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy11128 47 ESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEK 88 (212)
Q Consensus 47 ~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~ 88 (212)
+.|.|+|.-+.-.-+ +.+.+.|..|++.|+|+|.+.+++.
T Consensus 190 ~aGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~ 229 (338)
T 2eja_A 190 KAGADVVQIFDSWVN--NLSLEDYGEYVYPYVNYLISELKDF 229 (338)
T ss_dssp HTTCSEEEEEETTGG--GSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEecCccc--cCCHHHHHHHhHHHHHHHHHHHhhc
Confidence 457777654433222 3489999999999999999999864
No 30
>3bbn_T Ribosomal protein S20; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.45 E-value=72 Score=27.21 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhh---------cChhhhHHHHHhHHHHHH
Q psy11128 67 KKGYTAYLKDYMKKLVAKLEE---------KAPDQIETFKTNMNKVMK 105 (212)
Q Consensus 67 KK~Yk~YIK~YmKkIk~kLeE---------~~perVk~Fkk~A~~~VK 105 (212)
-+.|++-+|.++|++.+-++. .+.|.+......|+..+.
T Consensus 104 Nka~KS~vRTaIKKv~~AIea~~~~~~~~~gDke~A~~al~~A~s~ID 151 (202)
T 3bbn_T 104 NKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAID 151 (202)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTCCCCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCcCCHHHHHHHHHHHHHHHH
Confidence 468889999999999999886 334556555555555543
No 31
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*
Probab=23.34 E-value=53 Score=28.56 Aligned_cols=40 Identities=5% Similarity=0.129 Sum_probs=29.2
Q ss_pred ccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHh-hc
Q psy11128 47 ESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLE-EK 88 (212)
Q Consensus 47 ~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLe-E~ 88 (212)
+.|.|+|.=|.-.-. +.+.+.|..|++.|+|+|.+.++ +.
T Consensus 208 ~aGad~i~i~D~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~ 248 (367)
T 1r3s_A 208 VAGAQALQLFESHAG--HLGPQLFNKFALPYIRDVAKQVKARL 248 (367)
T ss_dssp HTTCSEEEEEETTGG--GSCHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEecCccc--cCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 456776654433222 34999999999999999999887 54
No 32
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis}
Probab=20.79 E-value=37 Score=30.00 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=31.0
Q ss_pred cccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhcCh
Q psy11128 46 VESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAP 90 (212)
Q Consensus 46 v~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~~p 90 (212)
.+.|.|.|.=|.-.- ++.+.+.|..|++.|+|+|.+.+++..|
T Consensus 207 i~aGad~i~ifDs~~--~~Lsp~~f~ef~~Py~k~i~~~l~~~~~ 249 (368)
T 4exq_A 207 IEAGAQAVMIFDTWG--GALADGAYQRFSLDYIRRVVAQLKREHD 249 (368)
T ss_dssp HHHTCSEEEEEETTG--GGSCTTHHHHHTHHHHHHHHHTSCCEET
T ss_pred HHhCCCEEEEeCCcc--ccCCHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 346677765443222 2349999999999999999999987543
No 33
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1
Probab=20.57 E-value=94 Score=26.65 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.0
Q ss_pred ccccceeeccccccccCCCChHHHHHHHHHHHHHHHHHHhhc
Q psy11128 47 ESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEK 88 (212)
Q Consensus 47 ~svVDIV~nhrLqEt~~F~dKK~Yk~YIK~YmKkIk~kLeE~ 88 (212)
+.|.|+|.-+.-.-+ +.+.+.|..|.+.|+|+|.+.+++.
T Consensus 204 ~aGad~iqi~D~~~~--~lsp~~f~ef~~p~~~~i~~~i~~~ 243 (353)
T 1j93_A 204 DSGAQAVQIFDSWAT--ELSPVDFEEFSLPYLKQIVDSVKLT 243 (353)
T ss_dssp HTTCSEEEEECGGGG--GSCHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEeCcccc--cCCHHHHHHHhHHHHHHHHHHHHHh
Confidence 456776654432222 3489999999999999999988754
Done!