RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11128
(212 letters)
>gnl|CDD|189736 pfam00838, TCTP, Translationally controlled tumour protein.
Length = 165
Score = 119 bits (300), Expect = 3e-34
Identities = 52/100 (52%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Query: 19 VVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYM 78
V R GD + G NPSAE +EG DE VE VDIVLN RL ET +F DKK + Y+K YM
Sbjct: 35 VTRTGGDDVLIGANPSAEGGEEGVDETVERVVDIVLNFRLQET-SF-DKKSFKTYIKGYM 92
Query: 79 KKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
K + AKL+E+ P+++ FK N+ +K LL +FKD QFF
Sbjct: 93 KAVKAKLQEENPERVSLFKKNIQGWVKSLLAKFKDYQFFI 132
>gnl|CDD|173440 PTZ00151, PTZ00151, translationally controlled tumor-like protein;
Provisional.
Length = 172
Score = 79.4 bits (196), Expect = 8e-19
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 34 SAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQI 93
S E EG D VE+ +DIV +L T F KK Y+ Y+K YM+++ A LEEK PD++
Sbjct: 54 SEEGDVEGVDADVETVIDIVDAFKLQST-PF-TKKEYSTYIKKYMQRIKAYLEEKNPDRV 111
Query: 94 ETFKTNMNKVMKELLGRFKDLQFF 117
E FKTN +K +L F D +F+
Sbjct: 112 EKFKTNAQPFVKHILENFDDFEFY 135
>gnl|CDD|215196 PLN02346, PLN02346, histidine biosynthesis bifunctional protein
hisIE.
Length = 271
Score = 30.2 bits (68), Expect = 0.77
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 53 VLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFK 112
+ R E G K +T L + L +K+ E+A + +T + N K
Sbjct: 170 TIQQRKEEAVPQGGKPSWTKRLLQDPELLCSKIREEAGELCQTLEENEGK---------- 219
Query: 113 DLQFFTVNFKEYQAEHMVDLLIHSSVR 139
E A M D+L H+ V
Sbjct: 220 ----------ERTASEMADVLYHAMVL 236
>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain. This region is found in
the Formin-like and and diaphanous proteins.
Length = 197
Score = 29.2 bits (66), Expect = 1.2
Identities = 34/133 (25%), Positives = 50/133 (37%), Gaps = 37/133 (27%)
Query: 31 FNPSAEEADEGTDEAVESGVDIV------------LNHRL---CETFAFGDKKGYTAYLK 75
F D ++ VE V + LN RL E G L
Sbjct: 23 FRSLVGALDSSENDNVEYKVATMQFINALVNSPEDLNFRLHLRSEFTRLG--------LD 74
Query: 76 DYMKKLVAKLE-EKAPDQIETFKTNMNKVMKELLGRFKD-----------LQFFTVNFKE 123
+ KL +LE EK DQ++ F+ N + ++ELL RF D + K+
Sbjct: 75 RILDKL-RELENEKLDDQLQIFEENREEDVEELLERFDDVNVDLDDPVELFELLKNKVKD 133
Query: 124 YQAE-HMVDLLIH 135
+AE H + +L H
Sbjct: 134 TEAEPHFLSILQH 146
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. catalyzes the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 29.8 bits (68), Expect = 1.2
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 27/96 (28%)
Query: 28 IDGFNPSAEEADEGTDEAVESGVDIVLN---HRLCETFAFGDKKGYTAYLKDYMKKLVAK 84
DG S EE D +AVE+G I LN H C A D D VA+
Sbjct: 18 CDG---SEEEYDRLRKKAVEAGELIPLNEEKHPNC-YLARSDP-------SD-----VAR 61
Query: 85 LEEK----APDQIETFKTNM----NKVMKELLGRFK 112
+E + PD+ + TN ++ EL FK
Sbjct: 62 VESRTFICTPDKEDAGPTNNWMDPEEMKAELRELFK 97
>gnl|CDD|235953 PRK07188, PRK07188, nicotinate phosphoribosyltransferase;
Provisional.
Length = 352
Score = 28.0 bits (63), Expect = 3.4
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 61 TFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQIET---FKTNMNKV---MKELLGRFKDL 114
TF F ++ G Y Y K +E+ P+ I T F+ N V E++ L
Sbjct: 6 TFKFDERIGEGWYSAVYFLKTREIIEKFNPNNIVTMQFFQRRENAVLCGTDEVI---ALL 62
Query: 115 QFFTVNFKEY 124
+ F + +
Sbjct: 63 KTFAKDPSKL 72
>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and
modification].
Length = 2365
Score = 28.4 bits (63), Expect = 3.5
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 60 ETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFF-- 117
+ Y LK+Y++ ++ K + ++KEL K+ ++F
Sbjct: 467 QERPVKVPVSYQKLLKNYVRNMLHKTRPRPH--------TNTHLLKEL----KNTKYFQR 514
Query: 118 -TVNFKE------YQAEHMVDLLIHSSVRRHSVIPMNGNL-PIYCRCCSGYECMGSILGI 169
+++ E Q +M+ LLIH + + N NL P + + E S +G
Sbjct: 515 TEIDWVEAGLQLCRQGHNMLSLLIHRKGLTYLHLDYNFNLKPT--KTLTTKERKKSRVGN 572
Query: 170 S-TILKIIIYWTRLVVTLHLKY 190
S +++ ++ + +L+V +H+++
Sbjct: 573 SFHLMREMLKFIKLIVDIHVQF 594
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 27.6 bits (62), Expect = 5.3
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 17/44 (38%)
Query: 118 TVNFKEYQAEHMVDLLIHS---------------SVRRH--SVI 144
T+N E+Q H V L S +VRR SV+
Sbjct: 629 TINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVV 672
>gnl|CDD|129173 TIGR00063, folE, GTP cyclohydrolase I. alternate names: Punch
(Drosophila),GTP cyclohydrolase I (EC 3.5.4.16)
catalyzes the biosynthesis of formic acid and
dihydroneopterin triphosphate from GTP. This reaction is
the first step in the biosynthesis of tetrahydrofolate
in prokaryotes, of tetrahydrobiopterin in vertebrates,
and of pteridine-containing pigments in insects
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 180
Score = 27.0 bits (60), Expect = 5.6
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 102 KVMKELLGRFKDLQFFTVNFKEYQAEH--MV---DLLIHSSVRRHSVIPMNGNLPIYCRC 156
K+ E+ + F + +Q +H MV D+ S+ H V P +
Sbjct: 30 KMYVEIFSGYDYANFPKITLAIFQEKHDEMVLVRDITFTSTCEHHLV-------PFDGKA 82
Query: 157 CSGYECMGSILGISTILKII-IYWTRLVV 184
Y ++G+S I +I+ + R V
Sbjct: 83 HVAYIPKDKVIGLSKIARIVEFFARRPQV 111
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 27.7 bits (62), Expect = 5.6
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107
K+ L ++L+A+LE K + + + +EL
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEEL 235
>gnl|CDD|149349 pfam08236, SRI, SRI (Set2 Rpb1 interacting) domain. The SRI
(Set2 Rpb1 interacting) domain mediates RNA polymerase
II interaction and couples histone H3 K36 methylation
with transcript elongation. This domain is conserved
from yeast to humans. Members of this family form a
compact, closed three-helix bundle, with an up-down-up
topology. The first and second helices are antiparallel
to each other and are of similar length; the third
helix, which is packed across helices alpha1 and alpha2
is slightly shorter, consisting of only 15 amino acids.
Most conserved hydrophobic residues are largely buried
in the interior of the structure and form an extensive
and contiguous hydrophobic core that stabilises the
packing of the three-helix bundle. This domain mediates
RNA polymerase II interaction and couples histone H3
K36 methylation with transcript elongation.
Length = 89
Score = 26.1 bits (58), Expect = 5.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 67 KKGYTAYLKDYMKKLVAKLEEKA 89
+K ++K+YM K VAK EK
Sbjct: 67 RKKIKEFVKEYMDKFVAKYREKE 89
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 27.7 bits (62), Expect = 5.8
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 24/92 (26%)
Query: 28 IDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEE 87
DG S EE D + VE+G +I LN + VA++EE
Sbjct: 39 CDG---SPEEYDYLCWKMVEAGEEIKLNPEK--------HPNSYLARSNPSD--VARVEE 85
Query: 88 K----APDQIETFKTN-------MNKVMKELL 108
+ +P + + TN M M EL
Sbjct: 86 RTFICSPKEEDAGPTNNWMDPQEMRSEMNELF 117
>gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.
Length = 346
Score = 27.4 bits (62), Expect = 6.0
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 20/55 (36%)
Query: 46 VESGVDIV---------LNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPD 91
+E+G V L+ Y ++ YMK++VA+L+ + PD
Sbjct: 196 IEAGAQAVQIFDSWAGALSPAD-----------YREFVLPYMKRIVAELKREHPD 239
>gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the
nitroalkane oxidizing enzyme families, catalyzes
oxidative denitrification of nitroalkanes to their
corresponding carbonyl compounds and nitrites. NDP is a
member of the NAD(P)H-dependent flavin oxidoreductase
family that reduce a range of alternative electron
acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as
electron donor. Some contain 4Fe-4S cluster to transfer
electron from FAD to FMN.
Length = 236
Score = 27.1 bits (61), Expect = 6.4
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 43 DEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVA---------KLEEKAPD 91
+ A+E GV +V +F+FG LK K++ K E D
Sbjct: 74 EVALEEGVPVV-------SFSFGPPAEVVERLKAAGIKVIPTVTSVEEARKAEAAGAD 124
>gnl|CDD|236993 PRK11820, PRK11820, hypothetical protein; Provisional.
Length = 288
Score = 27.0 bits (61), Expect = 8.0
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 78 MKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRF 111
++ LVAK+E AP+ +E ++ + + ++ELLG
Sbjct: 164 IEALVAKIEALAPEILEEYRERLRERLEELLGEL 197
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 26.8 bits (60), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 32 NPSAEEADEGTDEAVESGVDIVL 54
NP+ EE DE A E G D+++
Sbjct: 61 NPTLEEVDEAAAAAREEGADVII 83
>gnl|CDD|220645 pfam10239, DUF2465, Protein of unknown function (DUF2465). FAM98A
and B proteins are found from worms to humans but their
function is unknown. This entry is of a family of
proteins that is rich in glycines.
Length = 318
Score = 26.7 bits (59), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 80 KLVAKLEEK--APDQIETFKTNMNKVMKEL 107
KL+ KL+E PD E+F+ ++ +KEL
Sbjct: 45 KLLCKLDENVSCPDDAESFQLELSGFLKEL 74
>gnl|CDD|227613 COG5294, COG5294, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 113
Score = 25.8 bits (57), Expect = 9.1
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 1 MK--LVIHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRL 58
MK L+ + LLL I + + + N D FNP + D ++
Sbjct: 1 MKKILIGILALLLIIIGALFIFYNI---NYDRFNPYVKITDSYAKVEEDTQDGSPGYEYT 57
Query: 59 CETF-AFGDKKGYT----------AYLK-DYMKKLVAKLEE 87
+ G KK AYLK + K V EE
Sbjct: 58 ITAYNKNGKKKEVKFTATHNLRKEAYLKLTHKGKGVTSWEE 98
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 26.5 bits (59), Expect = 9.7
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 16/94 (17%)
Query: 14 FFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKK-GYTA 72
F + ++D FNP +E + + L L + + Y
Sbjct: 115 FGGPAPTKDTDLESLDLFNPKTKE--DFEE----------LRKALAKKLTKYESSPHYAG 162
Query: 73 YLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKE 106
+L+D ++ L A L + I+ + +N ++ E
Sbjct: 163 FLEDLIRDLAAPLS---SEDIKKVSSTLNVLINE 193
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.141 0.421
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,011,856
Number of extensions: 1044403
Number of successful extensions: 1553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1551
Number of HSP's successfully gapped: 44
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)