RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11128
(212 letters)
>2kwb_A TCTP, translationally-controlled tumor protein homolog; structural
genomics, northeast structural genomics consortiu PSI-2;
NMR {Caenorhabditis elegans} PDB: 2loy_A
Length = 189
Score = 111 bits (278), Expect = 5e-31
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 7/125 (5%)
Query: 16 SQTVVRKVGDVNIDGFNPSAEE--ADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAY 73
+ VVRK G++ + G NPSAEE D+G+DE VE G+DIVLNH+L E + D + AY
Sbjct: 32 GKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAY 91
Query: 74 LKDYMKKLVAKLEEKAPD--QIETFKTNMNKVMKELLG--RFKDLQFFT-VNFKEYQAEH 128
+K +MK ++ +E+ D ++ FK + + LL RFK+L FF E
Sbjct: 92 IKKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENG 151
Query: 129 MVDLL 133
V ++
Sbjct: 152 QVAII 156
>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A
{Homo sapiens} SCOP: b.88.1.2 PDB: 2hr9_A 3ebm_A
Length = 174
Score = 110 bits (277), Expect = 6e-31
Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 5/112 (4%)
Query: 10 LLFIFFSQTVVRKVG--DVNIDGFNPSAEE-ADEGTDEAVESGVDIVLNHRLCETFAFGD 66
L + V R G D ++ G N SAE EGT+ V +GVDIV+NH L ET +F
Sbjct: 29 LCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET-SF-T 86
Query: 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
K+ Y Y+KDYMK + KLEE+ P++++ F T + +K +L FK+ QFF
Sbjct: 87 KEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFI 138
>1h6q_A TCTP, P23FYP, translationally controlled tumor protein;
tumor-associated protein, function unknown; NMR
{Schizosaccharomyces pombe} SCOP: b.88.1.2 PDB: 1h7y_A
Length = 168
Score = 108 bits (272), Expect = 2e-30
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 10 LLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKG 69
+++ Q V K G G NPSAE+A+E +E E+ ++V + RL T DKK
Sbjct: 26 IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTETVNNLVYSFRLSPTSF--DKKS 83
Query: 70 YTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
Y +Y+K YMK + A+L+E P+++ F+ N +K++L FKD F+
Sbjct: 84 YMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYI 132
>1txj_A Translationally controlled tumour-associated protein (TCTP) from
plasmodium knowlesi,...; structural genomics consortium,
SGC; 2.00A {Plasmodium knowlesi} SCOP: b.88.1.2 PDB:
3p3k_A
Length = 171
Score = 106 bits (266), Expect = 2e-29
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 10 LLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKG 69
+ F S ++ D I ++EEA +G VE +DIV + +L T KK
Sbjct: 32 IAFEVKSNKRIKGNDDYGI---ADNSEEAVDGMGADVEQVIDIVDSFQLTSTSL--SKKE 86
Query: 70 YTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
Y+ Y+K+YM+K++ LEEK PD+++ FKT ++K +L F D +F+
Sbjct: 87 YSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYM 135
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.001
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 9/29 (31%)
Query: 75 KDYMKKLVAKLEEKAPD---------QIE 94
K +KKL A L+ A D +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.10
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 26/82 (31%)
Query: 74 LKD-YMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDL 132
L++ + K L E A D + T EL+G+F L + + + + +
Sbjct: 33 LQEQFNKILPEPTEGFAAD--DEPTTPA-----ELVGKF--LGYVSSLVEPSKVGQFDQV 83
Query: 133 L----------------IHSSV 138
L IH+
Sbjct: 84 LNLCLTEFENCYLEGNDIHALA 105
Score = 30.4 bits (68), Expect = 0.45
Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 52/159 (32%)
Query: 44 EAVESGVDIVLNHRLCETFA-FGDKKG--------------YTAY---LKDYMKKLVAKL 85
AV G N +L A FG G Y Y + D +K L
Sbjct: 147 RAVGEG-----NAQL---VAIFG---GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 86 EEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVRRHSVIP 145
E ++ K + + ++ + + D L+ + S P
Sbjct: 196 SELIRTTLDAEK---------VFTQGLNILEW---LENPSNTPDKDYLLSIPI---SC-P 239
Query: 146 MNG--NLPIYCRCC--SGY---ECMGSILGISTILKIII 177
+ G L Y G+ E + G + + ++
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.16
Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 62/226 (27%)
Query: 11 LFIFFSQTVVRKVGDVNIDGFNPSAEEA---DEGTDEAVESGVDIVLNHRLCETFAFGDK 67
L +F +I P+ + + V V+ + + L E
Sbjct: 378 LSVF------PP--SAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQP 421
Query: 68 KGYTAYLKDYMKKLVAKLEEKAP---DQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEY 124
K T + +L KLE + ++ + +L+ + D F+ +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY-----SH 476
Query: 125 QAEHMVDLLIHSSVRRHSVIPMNGNLPIY----------CRCCSGYECMGSILGISTILK 174
H+ ++ R ++ M ++ + + GSIL +T+ +
Sbjct: 477 IGHHLKNIEHP---ERMTLFRM-----VFLDFRFLEQKIRHDSTAWNASGSIL--NTLQQ 526
Query: 175 IIIY----------WTRLVVTLHLKYLVELIELIGTAWVLGRAKDL 210
+ Y + RLV + L +L + I + + DL
Sbjct: 527 LKFYKPYICDNDPKYERLVNAI-LDFLPK----IEENLICSKYTDL 567
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 30.4 bits (69), Expect = 0.50
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 71 TAYLKDYMKKLV-----AKLEEKAPDQIETFKTNMNKVMKELLGRFKDL 114
+L K V LE + D IE + + K ++++ K +
Sbjct: 1006 FRFLVRRYAKFVSEDRTRDLESRM-DAIERGELDYLKALEDMYAEIKSI 1053
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A
{Pyrobaculum spherical virus}
Length = 131
Score = 28.9 bits (64), Expect = 0.57
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 97 KTNMNKVMKELLGRFKDLQFFTVNFKEYQAE 127
KT+++ ++KEL KDL++ +KEY+ E
Sbjct: 90 KTDISAILKELCEVKKDLEYVLKRYKEYEEE 120
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 28.0 bits (61), Expect = 2.4
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 1/86 (1%)
Query: 80 KLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFTVNFKEYQAEHMVDLLIHSSVR 139
K + E K+M + + R + V ++ + I S
Sbjct: 508 KCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQTWDE-AVFREKILHIQTHEKFIRDSQE 566
Query: 140 RHSVIPMNGNLPIYCRCCSGYECMGS 165
+ +P N + CR C C +
Sbjct: 567 KPKPVPDKENKKLLCRKCKALACYTA 592
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase,
guanine exchange factor; 2.10A {Homo sapiens}
Length = 391
Score = 27.3 bits (59), Expect = 4.5
Identities = 15/60 (25%), Positives = 22/60 (36%)
Query: 59 CETFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
+ A + A Y L K E E+F + + VMK+ L +LQ F
Sbjct: 304 GDGVARAFLRAQAALFGSYRDALRYKPGEPITFCEESFVKHRSSVMKQFLETAINLQLFK 363
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
barrel, glycos hydrolase, membrane, palmitate; HET: P4G;
1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Length = 642
Score = 26.4 bits (58), Expect = 8.3
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 39 DEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAK 84
+E AV++GVDI L + + ++ A + +K+ V
Sbjct: 332 EEAVVMAVKAGVDIAL---MPASVTSLKEEQKFARVIQALKEAVKN 374
>2c5z_A SET domain protein 2; SRI domain, RNA polymerase II,
transcription, CTD, SET2 histone methyltransferase; NMR
{Saccharomyces cerevisiae}
Length = 104
Score = 25.4 bits (55), Expect = 8.3
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 72 AYLKDYMKKLVAKLEEK 88
++ YM K++ K ++K
Sbjct: 81 EFINSYMDKIILKKKQK 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 26.4 bits (57), Expect = 8.3
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 72 AYLKDYMKKLVAKLEEK-APDQIETFKTNMNKVMKELLGRFKD-LQFFTVNFKEYQAEHM 129
YL Y+ +++ +QI +F + + K K+ L FK L+ F V KE +
Sbjct: 954 VYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKD-LVVFKGTLRDFLVQIKEVGGDPT 1012
Query: 130 VDL 132
L
Sbjct: 1013 DYL 1015
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.421
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,362,843
Number of extensions: 200318
Number of successful extensions: 731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 23
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)