RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11128
(212 letters)
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 168
Score = 122 bits (308), Expect = 4e-36
Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 10 LLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKG 69
+++ Q V K G G NPSAE+A+E +E E+ ++V + RL T +F DKK
Sbjct: 26 IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKS 83
Query: 70 YTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
Y +Y+K YMK + A+L+E P+++ F+ N +K++L FKD F+
Sbjct: 84 YMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYI 132
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
(histamine-releasing factor) {Plasmodium knowlesi
[TaxId: 5850]}
Length = 171
Score = 122 bits (307), Expect = 6e-36
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 1 MKLVIHVQLLLFIFFSQTVVRKVGDVNIDGFNPSAEEADEGTDEAVESGVDIVLNHRLCE 60
+ + I F +++ + G ++EEA +G VE +DIV + +L
Sbjct: 20 QEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDGMGADVEQVIDIVDSFQLTS 79
Query: 61 TFAFGDKKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
T KK Y+ Y+K+YM+K++ LEEK PD+++ FKT ++K +L F D +F+
Sbjct: 80 TSL--SKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYM 135
>d1yz1a1 b.88.1.2 (A:1-172) Translationally controlled tumor protein
TCTP (histamine-releasing factor) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 172
Score = 119 bits (301), Expect = 6e-35
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Query: 10 LLFIFFSQTVVRKVGDV--NIDGFNPSAEEA-DEGTDEAVESGVDIVLNHRLCETFAFGD 66
L + V R G++ ++ G N SAE EGT+ V +GVDIV+NH L ET +F
Sbjct: 27 LCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET-SF-T 84
Query: 67 KKGYTAYLKDYMKKLVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDLQFFT 118
K+ Y Y+KDYMK + KLEE+ P++++ F T + +K +L FK+ QFF
Sbjct: 85 KEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFI 136
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 28.8 bits (63), Expect = 0.51
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 71 TAYLKDYMKKLV-----AKLEEKAPDQIETFKTNMNKVMKELLGRFKDL 114
+L K V LE + D IE + + K ++++ K +
Sbjct: 508 FRFLVRRYAKFVSEDRTRDLESRM-DAIERGELDYLKALEDMYAEIKSI 555
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 77
Score = 25.5 bits (56), Expect = 1.9
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 60 ETFAFGDKKGYTAYLKDY------------MKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107
E G + Y A LK + +K+LV L ++ I K++
Sbjct: 13 EALLLGSESNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKL---TEKILTSP 69
Query: 108 L 108
L
Sbjct: 70 L 70
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 70
Score = 25.1 bits (55), Expect = 2.1
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 60 ETFAFGDKKGYTAYLKDY------------MKKLVAKLEEKAPDQIETFKTNMNKVMKEL 107
E G Y LK++ MKK++ L + + I K++K
Sbjct: 11 ENLLLGTPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKL---TEKIVKSP 67
Query: 108 L 108
L
Sbjct: 68 L 68
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 26.3 bits (58), Expect = 2.8
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 28 IDGFNPSAEEADEGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEE 87
DG S EE + E G+ L A D + A ++ + + +
Sbjct: 37 CDG---SEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRD-VARIESKTVIVTQEQRD 92
Query: 88 KAPDQIETFKTNMNKVM------KELLGRFK 112
P +T + + + M K RF
Sbjct: 93 TVPI-PKTGLSQLGRWMSEEDFEKAFNARFP 122
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 26.5 bits (57), Expect = 2.9
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 71 TAYLKDYMKK--LVAKLEEKAPDQIETFKTNMNKVMKELLGRFKDL 114
L + + + A E QI + M+ L+G L
Sbjct: 558 FHSLPEMATRPDMTAHWESVL-TQISEKQCRYQDFMQPLVGTLYQL 602
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia
coli [TaxId: 562]}
Length = 247
Score = 25.0 bits (54), Expect = 6.7
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 43 DEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAK 84
DEAV G D V+ H F G+ ++ +K L+A
Sbjct: 50 DEAVRLGADAVIVHHGY--FWKGESPVIRGMKRNRLKTLLAN 89
>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 591
Score = 25.3 bits (54), Expect = 7.2
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 71 TAYLKDYMKKLV-----AKLEEKAPDQIETFKTNMNKVMKELLGRFKDL 114
T L++ ++L+ A++E DQ+ + V+ F
Sbjct: 526 TDRLEENFRELMNYDFTAQMENNL-DQVANHEAEWKAVLDHFFSDFTQQ 573
>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 384
Score = 25.0 bits (54), Expect = 7.9
Identities = 7/70 (10%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 31 FNPSAEEADEGTDEAVESGVD---IVLNHRLCETFAFGDKKGYTAYLKDYMKKLVAKLEE 87
++ + + + A S +D + L D + + + + L +
Sbjct: 190 YSREFKSSFDMKVSADSSDLDYFNTLSRQHLALLLLEPDDQKRINLVNTFSHYITGALTQ 249
Query: 88 KAPDQIETFK 97
P + +
Sbjct: 250 VPPGGKDGLR 259
>d1xcoa_ c.77.1.5 (A:) Phosphotransacetylase Pta {Bacillus subtilis
[TaxId: 1423]}
Length = 324
Score = 25.1 bits (54), Expect = 8.4
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 10/134 (7%)
Query: 40 EGTDEAVESGVDIVLNHRLCETFAFGDKKGYTAYLKDY------MKKLVAKLEEKAPDQI 93
EG DE + V + +++ G++ A K+ +K E D +
Sbjct: 24 EGLDERILEAVSKLAGNKVLNPIVIGNENEIQAKAKELNLTLGGVKIYDPHTYEGMEDLV 83
Query: 94 ETFKTNMNKVMKELLGR--FKDLQFFTVNFKEYQAEH--MVDLLIHSSVRRHSVIPMNGN 149
+ F E R D +F + ++ + +
Sbjct: 84 QAFVERRKGKATEEQARKALLDENYFGTMLVYKGLADGLVSGAAHSTADTVRPALQIIKT 143
Query: 150 LPIYCRCCSGYECM 163
+ +
Sbjct: 144 KEGVKKTSGVFIMA 157
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.421
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 817,952
Number of extensions: 38367
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 20
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)