BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11131
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 7/137 (5%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
V+ R + + L I+ EDSG Y C +N G + E L V+ P ++PP +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354
Query: 66 VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
V A F C+ Y P ++W KDG+ I G + S L I V +ED+G+YQC
Sbjct: 355 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 408
Query: 125 RSDGDVAQGSAELQLGG 141
R+D + A+ SAEL+LGG
Sbjct: 409 RNDRESAEASAELKLGG 425
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 15/130 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQCE 77
L I V A D G Y+C + + G A +L V PY + ++ + C
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKK--AIVAGETLIVTCP 549
Query: 78 IT--PYDSGPYLIAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGD 129
+ P DS I W +D R +P +L+I V R D+ Y C+A+ +G
Sbjct: 550 VAGYPIDS----IVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 130 VAQGSAELQL 139
A+GS E+Q+
Sbjct: 606 SARGSLEVQV 615
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
V+ R + + L I+ EDSG Y C +N G + E L V+ P ++PP +
Sbjct: 262 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 321
Query: 66 VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
V A F C+ Y P ++W KDG+ I G + S L I V +ED+G+YQC
Sbjct: 322 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 375
Query: 125 RSDGDVAQGSAELQLG 140
R+D + A+ SAEL+LG
Sbjct: 376 RNDRESAEASAELKLG 391
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
V+ R + + L I+ EDSG Y C +N G + E L V+ P ++PP +
Sbjct: 265 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 324
Query: 66 VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
V A F C+ Y P ++W KDG+ I G + S L I V +ED+G+YQC
Sbjct: 325 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 378
Query: 125 RSDGDVAQGSAELQLG 140
R+D + A+ SAEL+LG
Sbjct: 379 RNDRESAEASAELKLG 394
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 71/136 (52%), Gaps = 7/136 (5%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
V+ R + + L I+ EDSG Y C +N G + E L V+ P ++PP +
Sbjct: 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 318
Query: 66 VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
V A F C+ Y P ++W KDG+ I G + S L I V +ED+G+YQC
Sbjct: 319 VDFGRPAVFTCQ---YTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV- 372
Query: 125 RSDGDVAQGSAELQLG 140
R+D + A+ SAEL+LG
Sbjct: 373 RNDRESAEASAELKLG 388
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 53.1 bits (126), Expect = 5e-08, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 30 GTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY 86
G Y CS+SN G A++ +L +S P D+ P + + L S F+C +T + P
Sbjct: 170 GQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT--GTAPI 227
Query: 87 LIAWFKDGRQI-PGRTSSTSLVIN-------PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
I W KD R+I PG +LV N V + D G Y C A G + S Q
Sbjct: 228 KITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG---KDSCSAQ 284
Query: 139 LG 140
LG
Sbjct: 285 LG 286
Score = 43.5 bits (101), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
+L + ++ EDSG Y C + N G A++ L+V P P + + +CE
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 407
Query: 78 I--TPYDSGPYLIAWFKDGRQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
+ TP P+ ++W KD R+ I TS+ I V D G YQC A
Sbjct: 408 LQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 463
Query: 128 G-DVAQGSAELQ 138
G D GS L+
Sbjct: 464 GSDTCVGSITLK 475
Score = 39.7 bits (91), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCE 77
L + VT D+G Y C +SN+ G+ + +L V P R + P V D ++C+
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIA 123
I S + W+KD +I + S L + + ED G Y C A
Sbjct: 315 IG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 366
Score = 33.5 bits (75), Expect = 0.051, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 74 FQCEITPYDSGPYL-IAWFKDG---RQIPG-----RTSSTSLVINPVGREDRGIYQCIAR 124
QC++ D P + IAW+K+ R P + + SLVIN V D G Y C A
Sbjct: 25 LQCKV---DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAE 81
Query: 125 RSDGDVAQGS 134
S G VA +
Sbjct: 82 NSVGAVASSA 91
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNPPLLSVH--LDGSANFQ 75
L I V D G Y C + N +G A++ V + L VH L F+
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG--------REDRGIYQCIARRSD 127
C I S P ++W+KDG + + + I+ V + G Y C A
Sbjct: 123 CRIN--GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPL 180
Query: 128 GDVAQGSAELQL 139
G A SA+L L
Sbjct: 181 G-TASSSAKLTL 191
Score = 30.4 bits (67), Expect = 0.42, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITP 80
I V + D G Y+C +SN G T + + P R +S + Q I
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE- 502
Query: 81 YDSGPYLIAWFKDGRQI 97
+ P +AWFKD +I
Sbjct: 503 -GAEPISVAWFKDKGEI 518
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQ 75
P+L I+ V ED GTY C + NI G T + R+ + + P +DV + D ++ +
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDV---ITDTEADIGSDLR 313
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVA 131
+ W +DG+ + + S L + + ED G+YQC+A G V
Sbjct: 314 WSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV- 372
Query: 132 QGSAELQL 139
SAEL +
Sbjct: 373 YASAELTV 380
Score = 32.3 bits (72), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 140
++ NPV +D G YQC+A + G V A L+ G
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFG 98
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 8 PGPRTRVLGPILAIEG-VTAEDSGTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPL 63
P R R++ L I V A+D+G+Y+C ++N G A +R + + P
Sbjct: 52 PDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDP- 110
Query: 64 LSVHLDGSANFQCEITPYD---SGPYLIAWF-----KDGRQIPGRTSSTSLVINPVGRED 115
+ + F C P+ S +L+ F DGR+ +T+ +L I D
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-NLYIAKTEASD 169
Query: 116 RGIYQCIA 123
G Y C A
Sbjct: 170 LGNYSCFA 177
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
R V G L + EDSG Y+C + N G A L V
Sbjct: 340 RIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 55/136 (40%), Gaps = 20/136 (14%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSVH 67
R L + + VT ED+GTY C S GG + EV++++ P + VN P S
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIP-SSAT 120
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST---------------SLVINPVG 112
+ A C S P WFKDG +P ST LV +P+
Sbjct: 121 IGNRAVLTCSEQD-GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 113 REDRGIYQCIARRSDG 128
D G Y C AR G
Sbjct: 180 ASDTGEYSCEARNGYG 195
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
G L I VT +DSGTY C + +A L V P +P L + F+
Sbjct: 274 GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFE 333
Query: 76 CEIT--PYDSGPYLIAWFKDGR--------QIPGRTSSTSLVINPVGREDRGIYQCIARR 125
C ++ P + + W K+G QI G ++L I V + D G YQC+A
Sbjct: 334 CAVSGKPVPT----VNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSDEGFYQCVAEN 386
Query: 126 SDGDVAQGSAEL 137
G+ AQ SA+L
Sbjct: 387 EAGN-AQSSAQL 397
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 20/147 (13%)
Query: 7 LPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEAT---AEVRLQVSTP----YRV 57
+PG V+ P L I + DSG YRCS+ N T AEVR+ +S P
Sbjct: 165 IPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRI-LSDPGLHRQLY 223
Query: 58 DVNPPLLSVHLDGS-ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS------LVINP 110
+ P + ++G A +C ++ Y P W + I R+ S L+I+
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCVSGYP--PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISN 281
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAEL 137
V +D G Y C+ + +++ SAEL
Sbjct: 282 VTDDDSGTYTCVVTYKNENIS-ASAEL 307
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 28 DSGTYRCSSS--NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP 85
D G Y+C +S + G + ++ V+ P R ++ + + +CE+ D P
Sbjct: 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIG-DPMP 151
Query: 86 YLIAWFKDGRQ---IPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
I W K+ + IPG + S +L I+ + D G+Y+C AR AE+
Sbjct: 152 -TIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210
Query: 138 QL 139
++
Sbjct: 211 RI 212
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+V+P +++G L I GV D G Y+C + N G A + +L V P
Sbjct: 352 VVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
P+ P L I V+ ED GTY C + N G T + R+ V P L V D
Sbjct: 249 PQWTTAEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRI------IVQAQPEWLKVISD 302
Query: 70 GSA----NFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQC 121
A N + + W ++G + + + L + + ED G+YQC
Sbjct: 303 TEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQC 362
Query: 122 IARRSDGDVAQGSAEL 137
+A G + SAEL
Sbjct: 363 VAENKHGTI-YASAEL 377
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 140
+++NP +D G+YQC+A G V A L+ G
Sbjct: 63 VIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFG 97
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
R VL L ++ EDSG Y+C + N G A L V
Sbjct: 339 RVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAV 379
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 14/128 (10%)
Query: 8 PGPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPL 63
PG R +++G L I T A+D+G Y+C +SN G A +R + + P
Sbjct: 51 PGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDP- 109
Query: 64 LSVHLDGSANFQCEITPYDSG---PYLIAWF-----KDGRQIPGRTSSTSLVINPVGRED 115
+ H C + G +L+ F DGR +T+ +L I D
Sbjct: 110 VKAHEGWGVMLPCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTG-NLYIARTNASD 168
Query: 116 RGIYQCIA 123
G Y C+A
Sbjct: 169 LGNYSCLA 176
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY-----RVDVNPPLLSVHLDGSAN 73
L I +GTY CS +A + + V + V PLL +L
Sbjct: 133 LTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNL---VT 189
Query: 74 FQCEITPYDSGPYL---IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
CE P L +++ + + GR +S+ I RED G+Y C A DG+V
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249
Query: 131 AQGSAELQL 139
+ S EL+L
Sbjct: 250 LKRSPELEL 258
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 18/123 (14%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVR-------LQVSTPYRVD 58
L G T+ P I + DSG YRC G ++ LQVS+ +
Sbjct: 37 FLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTE 96
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 118
P L H D Y + ++++G+ +++L I G
Sbjct: 97 GEPLALRCH-----------AWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGT 145
Query: 119 YQC 121
Y C
Sbjct: 146 YHC 148
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
+L + ++ EDSG Y C + N G A++ L+V P P + + +CE
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 78 I--TPYDSGPYLIAWFKDGRQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
+ TP P+ ++W KD R+ I TS+ I V D G YQC A
Sbjct: 216 LQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 128 G 128
G
Sbjct: 272 G 272
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCE 77
L + VT D+G Y C +SN+ G+ + +L V P R + P V D ++C+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIAR 124
I S + W+KD +I + S L + + ED G Y C A
Sbjct: 123 IG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
+L + ++ EDSG Y C + N G A++ L+V P P + + +CE
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE 215
Query: 78 I--TPYDSGPYLIAWFKDGRQ--------IPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
+ TP P+ ++W KD R+ I TS+ I V D G YQC A
Sbjct: 216 LQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDV 271
Query: 128 G 128
G
Sbjct: 272 G 272
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCE 77
L + VT D+G Y C +SN+ G+ + +L V P R + P V D ++C+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIAR 124
I S + W+KD +I + S L + + ED G Y C A
Sbjct: 123 IG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAH 175
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQC 76
IL I ED+G+Y C + N G+ A+ +L + P V + + V ++ S ++C
Sbjct: 258 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND-IHVAMEESVFWEC 316
Query: 77 EITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
+ Y W K+G + R +L I V D G+YQC+A G V
Sbjct: 317 KANGRPKPTY--RWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIF 373
Query: 133 GSAELQL 139
SAEL +
Sbjct: 374 SSAELSV 380
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146
L+ NP +D G YQCIA S G + A+LQ N K
Sbjct: 64 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK 104
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 14 VLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNP-PLLSVHLDGS 71
V G +L +D+GTY+C ++N G + E +LQ + +SV
Sbjct: 59 VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQG 118
Query: 72 ANFQCEITPYDSGPYLIAW-------FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
C P+ SG AW ++D R+ + + +L I V + D G Y C+
Sbjct: 119 MVLLCGPPPH-SGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVV 175
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQC 76
IL I ED+G+Y C + N G+ A+ +L + P V + + V ++ S ++C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND-IHVAMEESVFWEC 317
Query: 77 EITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
+ Y W K+G + R +L I V D G+YQC+A G V
Sbjct: 318 KANGRPKPTY--RWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIF 374
Query: 133 GSAELQL 139
SAEL +
Sbjct: 375 SSAELSV 381
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146
L+ NP +D G YQCIA S G + A+LQ N K
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK 105
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 14 VLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNP-PLLSVHLDGS 71
V G +L +D+GTY+C ++N G + E +LQ + +SV
Sbjct: 60 VDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQG 119
Query: 72 ANFQCEITPYDSGPYLIAW-------FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
C P+ SG AW ++D R+ + + +L I V + D G Y C+
Sbjct: 120 MVLLCGPPPH-SGELSYAWIFNEYPSYQDNRRFVSQETG-NLYIAKVEKSDVGNYTCVV 176
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 16 GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV-------DVNPPLLSVH 67
G +L I+ + T D Y C +SN GE + RL V ++ D+ P L V
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKD----------GRQIPGRTSST-SLVINPVGREDR 116
+A C + + P I WFKD GR R+ S +L I D+
Sbjct: 122 RTRTATMLCAAS-GNPDPE-ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 117 GIYQCIARRSDGDVAQGSAELQLGGTR 143
G Y+C+A S G A L + GT+
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRGTK 206
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQ 75
+ VT +D+G Y C S GG+ EV + ++ P + ++ P SV + A
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRAVLT 125
Query: 76 CEITPYD-SGPYLIAWFKDGRQI----PGRT------------SSTSLVINPVGREDRGI 118
C + +D S P +WFKDG + +T S L+ +PV D G
Sbjct: 126 C--SEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183
Query: 119 YQCIARRSDGDVAQGSA------ELQLGG 141
Y C A+ G + A EL +GG
Sbjct: 184 YYCQAQNGYGTAMRSEAAHMDAVELNVGG 212
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG-SAN 73
G +L I V D G Y C+++N +GG + LQV ++ PP+ ++G A
Sbjct: 61 GQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKI-TRPPINVKIIEGLKAV 119
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDG 128
C T + ++W K + + S SL I+ V +ED G Y+C+A+ S G
Sbjct: 120 LPC--TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLG 177
Query: 129 DVAQGSAELQL 139
+L++
Sbjct: 178 TAYSKLVKLEV 188
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 16 GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR-------VDVNPPLLSVH 67
G +L I+ + T D Y C + N GE T +L V + +D+ P L V
Sbjct: 62 GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVE 121
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 119
+A C + + P I WFKD + TS S L I D+G Y
Sbjct: 122 RTRTATMLCAAS-GNPDPE-ITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKY 179
Query: 120 QCIARRSDG 128
+C+A S G
Sbjct: 180 ECVASNSAG 188
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 16 GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQV-------STPYRVDVNPPLLSVH 67
G +L I+ + T D Y C + N GE T +L V S +D+ P L V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 119
+A C + + P I WFKD + S S +L I D+G Y
Sbjct: 122 RTRTATMLCAAS-GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 120 QCIARRSDG 128
+C+A S G
Sbjct: 180 ECVATNSAG 188
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGR---------TSSTSLVINPVGR-EDRGIY 119
G A+F C+ T D P + W K G+++ + ++ L I P+ D +Y
Sbjct: 22 GVASFVCQAT-GDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVY 79
Query: 120 QCIARRSDGDV 130
+C+A+ S G++
Sbjct: 80 ECVAQNSVGEI 90
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGI 118
++ +DG+A +C+ T D P +I+W K+G PGR +L I + D G
Sbjct: 19 TLAVDGTALLKCKAT-GDPLP-VISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGT 76
Query: 119 YQCIARRSDGDVA 131
Y C+A S G+ +
Sbjct: 77 YTCVATSSSGETS 89
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG-GEAT-AEVRLQVSTPYRVDVNPPLL--SVHLDGSANF 74
L I G+ D GTYRC + GE ++++ V+ P V ++ + +L S
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216
Query: 75 QCEITPYDSGPY-LIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIA 123
C+ D P ++W KDG I S+ L I V + D Y CIA
Sbjct: 217 VCD---ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 273
Query: 124 RRSDGD 129
G+
Sbjct: 274 ENKAGE 279
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIP----------GRTSST 104
+VD+ P + + S F C++ D+ I+WF +G ++ S+
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+L I +D GIY+C+ DG ++ + +++
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I V D Y C + N GE A + L+V
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 16 GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQV-------STPYRVDVNPPLLSVH 67
G +L I+ + T D Y C + N GE T +L V S +D+ P L V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 119
+A C + + P I WFKD + S S +L I D+G Y
Sbjct: 122 RTRTATMLCAAS-GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 120 QCIARRSDG 128
+C+A S G
Sbjct: 180 ECVATNSAG 188
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST---------SLVINPVGR-EDRGIY 119
G A+F C+ T D P + W K G+++ + T L I P+ D +Y
Sbjct: 22 GVASFVCQAT-GDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVY 79
Query: 120 QCIARRSDGDV 130
+C+A+ S G++
Sbjct: 80 ECVAQNSVGEI 90
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPG---------RTSS 103
P R+D LL+V + F+C P P I+W K+GR+ G R
Sbjct: 125 PERMDKK--LLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQ 132
SLV+ V DRG Y C+ G + Q
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 28/136 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPLLSVHLDGSAN 73
L +E V D G Y C N G L V +P+R + P + L
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 74 FQCEITPYDSGPYLIAWFK----DGRQI-PGRTSSTS----------------LVINPVG 112
F C++ D+ P+ I W K +G ++ P T + L ++ V
Sbjct: 242 FHCKVYS-DAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVT 299
Query: 113 REDRGIYQCIARRSDG 128
ED G Y C+A S G
Sbjct: 300 FEDAGEYTCLAGNSIG 315
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 18/129 (13%)
Query: 16 GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQV-------STPYRVDVNPPLLSVH 67
G +L I+ + T D Y C + N GE T +L V S +D+ P L V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 119
+A C + + P I WFKD + S S +L I D+G Y
Sbjct: 122 RTRTATMLCAAS-GNPDPE-ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 120 QCIARRSDG 128
+C+A S G
Sbjct: 180 ECVATNSAG 188
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST---------SLVINPVGR-EDRGIY 119
G A+F C+ T D P + W K G+++ + T L I P+ D +Y
Sbjct: 22 GVASFVCQAT-GDPKPR-VTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVY 79
Query: 120 QCIARRSDGDV 130
+C+A+ S G++
Sbjct: 80 ECVAQNSVGEI 90
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 16 GPILAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQVSTPYR-------VDVNPPLLSVH 67
G +L I+ + + D Y C+++N GE +L V + +D+ P L V
Sbjct: 62 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 119
+A C + P I+WFKD + TS S +L I D+G Y
Sbjct: 122 KARTATMLC-AAGGNPDPE-ISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKY 179
Query: 120 QCIARRSDG 128
+C+A S G
Sbjct: 180 ECVATNSAG 188
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPG---------RTSS 103
P R+D LL+V + F+C P P I+W K+GR+ G R
Sbjct: 17 PERMDKK--LLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQ 132
SLV+ V DRG Y C+ G + Q
Sbjct: 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQ 100
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY-----RVDVNPPLLSVHLDGSAN 73
L I V +D+G YRC S GG + ++V+ PY R+ V P+ S H
Sbjct: 82 LQITDVKLQDAGVYRCMIS-YGGADYKRITVKVNAPYNKINQRILVVDPVTSEH-----E 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI-PGRTSST-------------SLVINPVGREDRGIY 119
C+ Y + W Q+ G+T++T +L IN E I+
Sbjct: 136 LTCQAEGYPKAE--VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE---IF 190
Query: 120 QCIARRSDGDVAQGSAEL 137
C RR D + +AEL
Sbjct: 191 YCTFRRLDPE-ENHTAEL 207
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 27 EDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS----VHLDGSANFQC-EITPY 81
EDSGTY C++ N + L+V D P +S + L S C +++ +
Sbjct: 91 EDSGTYVCTTRNASYCDKMSIELRVFE--NTDAFLPFISYPQILTLSTSGVLVCPDLSEF 148
Query: 82 --DSGPYLIAWFKDG-------RQIPGRTSSTSLVINPVGREDRGIYQCI 122
D I W+KD + +T L+++ V ED G Y+C+
Sbjct: 149 TRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCV 198
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY-----RVDVNPPLLSVHLDGSAN 73
L I V +D+G YRC S GG + ++V+ PY R+ V P+ S H
Sbjct: 82 LQITDVKLQDAGVYRCMIS-YGGADYKRITVKVNAPYNKINQRILVVDPVTSEH-----E 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI-PGRTSST-------------SLVINPVGREDRGIY 119
C+ Y + W Q+ G+T++T +L IN E I+
Sbjct: 136 LTCQAEGYPKAE--VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE---IF 190
Query: 120 QCIARRSDGDVAQGSAEL 137
C RR D + +AEL
Sbjct: 191 YCTFRRLDPE-ENHTAEL 207
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY-----RVDVNPPLLSVHLDGSAN 73
L I V +D+G YRC S GG + ++V+ PY R+ V P+ S H
Sbjct: 82 LQITDVKLQDAGVYRCMIS-YGGADYKRITVKVNAPYNKINQRILVVDPVTSEH-----E 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI-PGRTSST-------------SLVINPVGREDRGIY 119
C+ Y + W Q+ G+T++T +L IN E I+
Sbjct: 136 LTCQAEGYPKAE--VIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE---IF 190
Query: 120 QCIARRSDGDVAQGSAEL 137
C RR D + +AEL
Sbjct: 191 YCTFRRLDPE-ENHTAEL 207
>pdb|1XFP|A Chain A, Crystal Structure Of The Cdr2 Germline Reversion Mutant Of
Cab-lys3 In Complex With Hen Egg White Lysozyme
Length = 142
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 112
SV GS C + Y GPY + WF RQ PG+ IN G
Sbjct: 11 SVQAGGSLRLSCAASGYTIGPYCMGWF---RQAPGKEREGVAAINSGG 55
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRT----------SSTSLVINPVGREDRGIYQCI 122
N CE+ Y S I+WF+DG+ +P S++ L + P D G Y C
Sbjct: 37 NITCEVFAYPSA--TISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT 94
Query: 123 A 123
A
Sbjct: 95 A 95
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
R G L + ED G Y C N +G ++L V + + + P + V
Sbjct: 264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ 323
Query: 70 GS-ANFQCEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIARR 125
G C++T + + W + + + G + + LVI V D+G Y C A
Sbjct: 324 GQDVTIPCKVTGLPAPN--VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATN 381
Query: 126 SDGD 129
GD
Sbjct: 382 EHGD 385
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
L G R V L I+GV D G Y C ++N G+ E +QV+
Sbjct: 350 LSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
>pdb|1JTT|A Chain A, Degenerate Interfaces In Antigen-Antibody Complexes
Length = 133
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 112
SV GS C + Y GPY + WF RQ PG+ IN G
Sbjct: 11 SVQAGGSLRLSCAASGYTIGPYCMGWF---RQAPGKEREGVAAINMGG 55
>pdb|1JTP|A Chain A, Degenerate Interfaces In Antigen-Antibody Complexes
pdb|1JTP|B Chain B, Degenerate Interfaces In Antigen-Antibody Complexes
Length = 148
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 112
SV GS C + Y GPY + WF RQ PG+ IN G
Sbjct: 11 SVQAGGSLRLSCAASGYTIGPYCMGWF---RQAPGKEREGVAAINMGG 55
>pdb|1MEL|A Chain A, Crystal Structure Of A Camel Single-Domain Vh Antibody
Fragment In Complex With Lysozyme
pdb|1MEL|B Chain B, Crystal Structure Of A Camel Single-Domain Vh Antibody
Fragment In Complex With Lysozyme
pdb|1JTO|A Chain A, Degenerate Interfaces In Antigen-Antibody Complexes
pdb|1JTO|B Chain B, Degenerate Interfaces In Antigen-Antibody Complexes
Length = 148
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 112
SV GS C + Y GPY + WF RQ PG+ IN G
Sbjct: 11 SVQAGGSLRLSCAASGYTIGPYCMGWF---RQAPGKEREGVAAINMGG 55
>pdb|2Y7Q|A Chain A, The High-Affinity Complex Between Ige And Its Receptor Fc
Epsilon Ri
Length = 188
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-------TAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I EDSG Y+C + + + LQ S ++ P L H G
Sbjct: 56 LNIVNAKFEDSGEYKCQHQQVAESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH--GW 113
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
N+ Y + ++KDG + + ++ I ED G Y C +
Sbjct: 114 RNWDV---------YKVIYYKDGEALKYWYENHAISITNAAAEDSGTYYCTGK 157
>pdb|1F6A|A Chain A, Structure Of The Human Ige-Fc Bound To Its High Affinity
Receptor Fc(Epsilon)ri(Alpha)
Length = 176
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 18/113 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVR-------LQVSTPYRVDVNPPLLSVHLDGS 71
L I EDSG Y+C + + LQ S ++ P L H G
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVAESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH--GW 110
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
N+ Y + ++KDG + + ++ I ED G Y C +
Sbjct: 111 RNWDV---------YKVIYYKDGEALKYWYENHAISITNAAAEDSGTYYCTGK 154
>pdb|7FAB|L Chain L, Crystal Structure Of Human Immunoglobulin Fragment Fab New
Refined At 2.0 Angstroms Resolution
Length = 208
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
LAI G+ AED Y C S + GG V Q V + PP A
Sbjct: 68 LAITGLQAEDEADYYCQSYDRSLRVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANKAT 127
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW DG + +T+
Sbjct: 128 LVCLISDFYPGAVTVAWKADGSPVKAGVETTT 159
>pdb|3O2V|L Chain L, Crystal Structure Of 1e9 Phel89serLEUH47TRPMETH100BPHE, AN
Engineered Diels-Alderase Fab With Modified Specificity
And Catalytic Activity
pdb|3O2W|L Chain L, Crystal Structure Of The 1e9 Phel89serLEUH47TRPMETH100BPHE
FAB IN Complex With A 39a11 Transition State Analog
Length = 219
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 18 ILAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
IL I V AED G Y CS S GG E++ V+ P V + PP G+A
Sbjct: 77 ILKISRVEAEDLGVYFCSQSTHFFPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTA 135
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRG 117
+ C + + + W D G + S++L ++ E
Sbjct: 136 SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK 195
Query: 118 IYQC 121
+Y C
Sbjct: 196 VYAC 199
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 16 GPILAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQV-------STPYRVDVNPPLLSVH 67
G +L I+ + + D Y C+++N GE +L V S +D+ P L V
Sbjct: 63 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 119
+A C + P I+WFKD + S S +L I D+G Y
Sbjct: 123 KGRTATMLC-AAGGNPDPE-ISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKY 180
Query: 120 QCIARRSDG 128
+C+A S G
Sbjct: 181 ECVATNSAG 189
>pdb|3GO1|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 268-D In Complex With
V3 Peptide Mn
Length = 209
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I GV AED Y C S++ GG V Q V + PP A
Sbjct: 72 LTISGVQAEDEADYYCQSADSSGDYVFGGGTKVTVLGQPKANPTVTLFPPSSEELQANKA 131
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 132 TLVCLISDFYPGAVTVAWKADGSPV 156
>pdb|1ZMY|A Chain A, Cabbcii-10 Vhh Framework With Cdr Loops Of Cablys3 Grafted
On It And In Complex With Hen Egg White Lysozyme
Length = 142
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 112
SV GS C + Y GPY + WF RQ PG IN G
Sbjct: 11 SVQAGGSLRLSCTASGYTIGPYCMGWF---RQAPGGEREAVAAINMGG 55
>pdb|1MIM|L Chain L, Igg Fab Fragment (Cd25-Binding)
pdb|3IU3|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|D Chain D, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
Length = 210
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 19 LAIEGVTAEDSGTYRC---SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
L I + AED+ TY C SS GG E++ V+ P V + PP G+A+
Sbjct: 72 LTISSMEAEDAATYYCHQRSSYTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTASVV 130
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQ 120
C + + + W D G + S++L ++ E +Y
Sbjct: 131 CLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYA 190
Query: 121 C 121
C
Sbjct: 191 C 191
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L E V A D+G Y C + N GEAT V+L V
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|4G6A|D Chain D, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
pdb|4G6A|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Ap33
Length = 218
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V A+D+ TY C +N+ GG E++ V+ P V + PP G+A+
Sbjct: 77 LTIDPVEADDAATYYCQQNNVDPWTFGGGTKLEIKRAVAAP-SVFIFPPSDEQLKSGTAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 136 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 195
Query: 119 YQC 121
Y C
Sbjct: 196 YAC 198
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.7 bits (73), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG---SANF 74
I+ ++ + +D G Y C + + + V Q++ RV P ++ +L+ S
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV---APTITGNLENQTTSIGE 682
Query: 75 QCEITPYDSG--PYLIAWFKDGRQ------IPGRTSSTSLVINPVGREDRGIYQCIA 123
E++ SG P I WFKD I + + +L I V +ED G+Y C A
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 739
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL----- 63
G + L I+GVT D G Y C++S+ G T + ST RV P +
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASS--GLMTK----KNSTFVRVHEKPFVAFGSG 335
Query: 64 LSVHLDGSANFQCEITPYDSG--PYLIAWFKDGRQIPGRTSST-----SLVINPVGREDR 116
+ ++ + + I G P I W+K+G IP ++ T L I V D
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNG--IPLESNHTIKAGHVLTIMEVSERDT 393
Query: 117 GIYQCI 122
G Y I
Sbjct: 394 GNYTVI 399
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 32.3 bits (72), Expect = 0.096, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLV 107
R V P V SANF C + S P ++ W KD R++ + L
Sbjct: 378 RFIVKPYGTEVGEGQSANFYCRVIA--SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 435
Query: 108 INPVGREDRGIYQCIARRSDG 128
IN V +D+G Y A+ S G
Sbjct: 436 INRVKGDDKGEYTVRAKNSYG 456
>pdb|1F2Q|A Chain A, Crystal Structure Of The Human High-Affinity Ige Receptor
pdb|1J86|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1J86|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Monoclinic Crystal Form 2
pdb|1RPQ|A Chain A, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|B Chain B, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|C Chain C, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
pdb|1RPQ|D Chain D, High Affinity Ige Receptor (Alpha Chain) Complexed With
Tight-Binding E131 'zeta' Peptide From Phage Display
Length = 176
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-------TAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I EDSG Y+C + + + LQ S ++ P L H G
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH--GW 110
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
N+ Y + ++KDG + + ++ I ED G Y C +
Sbjct: 111 RNWDV---------YKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK 154
>pdb|1J89|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|B Chain B, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|C Chain C, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|D Chain D, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J89|E Chain E, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Tetragonal Crystal Form 2
pdb|1J88|A Chain A, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|B Chain B, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|C Chain C, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|D Chain D, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
pdb|1J88|E Chain E, Human High Affinity Fc Receptor Fc(epsilon)ri(alpha),
Tetragonal Crystal Form 1
Length = 172
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-------TAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I EDSG Y+C + + + LQ S ++ P L H G
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH--GW 110
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
N+ Y + ++KDG + + ++ I ED G Y C +
Sbjct: 111 RNWDV---------YKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK 154
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 29/139 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
+ I + D+G Y C + + LQV P P L+ L GS F C +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP-----EPELVYEDLRGSVTFHCAL 241
Query: 79 TP--YDSGPYL----------IAWFKDGRQIPG-----------RTSSTSLVINPVGRED 115
P + +L + G++ P + S S+VI + +ED
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 116 RGIYQCIARRSDGDVAQGS 134
G Y C A SDG + +GS
Sbjct: 302 AGRYLCGA-HSDGQLQEGS 319
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 24 VTAEDSGTYRC-SSSNIGGEATAEVRLQVSTP-YRVDVN-PPLLSVHLDGSANFQCEITP 80
+T+ D+G Y C ++ + T E+++ P +V N +L L +F C+ +
Sbjct: 413 LTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSS 472
Query: 81 YDSGPYLIAWFKDGRQ-IPGRTSS--------------TSLVINPVGREDRGIYQC 121
Y+ Y W G Q +P + SL +N V R D G Y C
Sbjct: 473 YEK--YWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWC 526
>pdb|1QKZ|L Chain L, Fab Fragment (Mn14c11.6) In Complex With A Peptide Antigen
Derived From Neisseria Meningitidis P1.7 Serosubtype
Antigen And Domain Ii From Streptococcal Protein G
Length = 217
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHFPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG++
Sbjct: 137 VCFLNNFYPKDINVKWKIDGKE 158
>pdb|1J87|A Chain A, Human High Affinity Fc Receptor Fc(Epsilon)ri(Alpha),
Hexagonal Crystal Form 1
Length = 172
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-------TAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I EDSG Y+C + + + LQ S ++ P L H G
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH--GW 110
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
N+ Y + ++KDG + + ++ I ED G Y C +
Sbjct: 111 RNWDV---------YKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK 154
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 32.3 bits (72), Expect = 0.11, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLV 107
R V P V SANF C + S P ++ W KD R++ + L
Sbjct: 484 RFIVKPYGTEVGEGQSANFYCRVIA--SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 108 INPVGREDRGIYQCIARRSDG 128
IN V +D+G Y A+ S G
Sbjct: 542 INRVKGDDKGEYTVRAKNSYG 562
>pdb|4HWN|A Chain A, Crystal Structure Of The Second Ig-C2 Domain Of Human
Fc-Receptor Like A (Fcrla), Isoform 9 [nysgrc-005836]
Length = 108
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 87 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
L +++KDGR + R S+ I + G Y C A D V + S +L++
Sbjct: 43 LFSFYKDGRIVQSRGLSSEFQIPTASEDHSGSYWCEAATEDNQVWKQSPQLEI 95
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
G +L I + ED G Y C + NI G+ + R+ V
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 19 LAIEGVTAEDSGTYRC--SSSNIGGEATAE------VRLQVSTPYRVDVNPPLLSVHLDG 70
L I V A D G Y C SS +I ++ + + + PY D+ V+
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRS 126
N E + I W K +P TS L I + ED GIY+C A
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 127 DG 128
G
Sbjct: 188 RG 189
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 32.0 bits (71), Expect = 0.13, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ AED Y C+S N G V Q V + PP
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST 104
A C I+ + G +AW DG + +T
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETT 164
>pdb|1RI8|A Chain A, Crystal Structure Of The Camelid Single Domain Antibody
1d2l19 In Complex With Hen Egg White Lysozyme
Length = 134
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR 113
SV GS C ++ Y Y + WF R+ PG+ VI+ GR
Sbjct: 11 SVQAGGSLRLSCAVSGYKDRNYCMGWF---RRAPGKEREGVAVIDSSGR 56
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV----------INPV--GR 113
V + G A+F C P I W K+G+++ G S +++ I PV GR
Sbjct: 20 VRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGR 77
Query: 114 EDRGIYQCIARRSDGDVAQGSAELQL 139
+D Y+C+A GD A L +
Sbjct: 78 DD-APYECVAENGVGDAVSADATLTI 102
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV----------IN 109
P V + G A+F C P I W K+G+++ G S +++ I
Sbjct: 12 KPQNQGVRVGGVASFYC--AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIE 69
Query: 110 PV--GREDRGIYQCIARRSDGDVAQGSAELQL 139
PV GR+D Y+C+A GD A L +
Sbjct: 70 PVRAGRDD-APYECVAENGVGDAVSADATLTI 100
>pdb|1A4J|L Chain L, Diels Alder Catalytic Antibody Germline Precursor
pdb|1A4J|A Chain A, Diels Alder Catalytic Antibody Germline Precursor
Length = 217
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1MRC|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRD|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRE|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
pdb|1MRF|L Chain L, Preparation, Characterization And Crystallization Of An
Antibody Fab Fragment That Recognizes Rna. Crystal
Structures Of Native Fab And Three Fab-Mononucleotide
Complexes
Length = 219
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG++
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGKE 159
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVSTPYRVDVNPPLLSV------HLDGS 71
L + +T +D G Y ++ T A VR V P V P L V LD S
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP----VTQPFLQVTNTTVKELD-S 127
Query: 72 ANFQCEITPYDSGPYLIAWFKDGR--QIPGRTS----STSLVINPVGREDRGIYQC 121
C D G I W + + Q+ R + ++ L I+P+ RED G YQC
Sbjct: 128 VTLTC--LSNDIGAN-IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
>pdb|3IF1|A Chain A, Crystal Structure Of 237mab In Complex With A Galnac
pdb|3IF1|C Chain C, Crystal Structure Of 237mab In Complex With A Galnac
Length = 215
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 77 LKISSVEAEDLGVYFCSQSTHVPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 135
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VCFLNNFYPKDINVKWKIDGSE 157
>pdb|1FPT|L Chain L, Three-Dimensional Structure Of The Complex Between The Fab
Fragment Of An Neutralizing Antibody For Type 1
Poliovirus And Its Viral Epitope
Length = 219
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C + + + W DG ++
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSEV 160
>pdb|3IET|A Chain A, Crystal Structure Of 237mab With Antigen
pdb|3IET|C Chain C, Crystal Structure Of 237mab With Antigen
Length = 217
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISSVEAEDLGVYFCSQSTHVPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVSTPYRVDVNPPLLSV------HLDGS 71
L + +T +D G Y ++ T A VR V P V P L V LD S
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP----VTQPFLQVTNTTVKELD-S 127
Query: 72 ANFQCEITPYDSGPYLIAWFKDGR--QIPGRTS----STSLVINPVGREDRGIYQC 121
C D G I W + + Q+ R + ++ L I+P+ RED G YQC
Sbjct: 128 VTLTC--LSNDIGAN-IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQC 180
>pdb|3TNN|L Chain L, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|B Chain B, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|D Chain D, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|F Chain F, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody
Length = 217
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G+ AED Y CSS GG VR Q V + PP
Sbjct: 75 LTISGLQAEDEADYYCSSYAGSTTFRVFGGGTKLTVRGQPKAAPSVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|2O5X|L Chain L, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
Affinity
pdb|2O5Y|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
PROGESTERONE Complex
pdb|2O5Z|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
5-Beta- Androstane-3,17-Dione Complex
Length = 219
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 21/124 (16%)
Query: 18 ILAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
IL I V AED G Y C S GG E++ V+ P V + PP G+A
Sbjct: 77 ILKISRVEAEDLGVYFCFQSTHFFPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTA 135
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRG 117
+ C + + + W D G + S++L ++ E
Sbjct: 136 SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK 195
Query: 118 IYQC 121
+Y C
Sbjct: 196 VYAC 199
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
R L + + VT ED+GTY C S GG + EV++++
Sbjct: 61 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 101
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 22/138 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP-------LLSVHLDGS 71
L I VT +SG Y ++N G+AT+ L V + + PP ++V
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLV----KAETAPPNFVQRLQSMTVRQGSQ 120
Query: 72 ANFQCEITPYDSGPYLIAWFKDGR--------QIPGRTSSTSLVINPVGREDRGIYQCIA 123
Q +T + ++ +++DG QI SL+I ED G Y A
Sbjct: 121 VRLQVRVTGIPTP--VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNA 178
Query: 124 RRSDGDVAQGSAELQLGG 141
S G A +AEL + G
Sbjct: 179 TNSVGR-ATSTAELLVQG 195
>pdb|4GAG|L Chain L, Structure Of The Broadly Neutralizing Antibody Ap33 In
Complex With Its Hcv Epitope (E2 Residues 412-423)
pdb|4GAJ|L Chain L, Structure Of The Broadly Neutralizing Antibody Ap33 In
Complex With Its Hcv Epitope (E2 Residues 411-424)
pdb|4GAY|L Chain L, Structure Of The Broadly Neutralizing Antibody Ap33
pdb|4GAY|B Chain B, Structure Of The Broadly Neutralizing Antibody Ap33
Length = 218
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V A+D+ TY C +N+ GG E++ + P V + PP G A+
Sbjct: 77 LTIDPVEADDAATYYCQQNNVDPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATA---------EVRLQVSTPYRVDVNPPLLSVHLD 69
++I +T D+GTY C G T VR + S P V+ P
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPV---VSGPAARATPQ 132
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 112
+ +F CE + + WFK+G ++ S ++PVG
Sbjct: 133 HTVSFTCESHGFSPRDITLKWFKNGNEL----SDFQTNVDPVG 171
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.2 bits (69), Expect = 0.21, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 10 PRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
PR VL L V D+G Y C +N+ G + A L VST
Sbjct: 399 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
>pdb|1UWG|L Chain L, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWG|X Chain X, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
Length = 213
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V +ED+ Y C N+ GG E++ V+ P V + PP G+A+
Sbjct: 73 LTIRDVQSEDAAEYFCQQYNLFPVTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + +AW D G + S++L ++ E +
Sbjct: 132 VVCLLNNFYPREAAVAWKVDNALQSGNSQESVTEQDSADSTYSLSSTLTLSKADYEKHKV 191
Query: 119 YQC 121
Y C
Sbjct: 192 YAC 194
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 21/132 (15%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-PYRVDVNPPLL 64
+L G T L + + D G Y C ++N GE + LQV P+ + +
Sbjct: 52 ILKGSNTE-----LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNE-- 104
Query: 65 SVHLDGSANFQC----EITPYDSGPYLIAWFK--------DGR-QIPGRTSSTSLVINPV 111
+ + +G C E P + + F DGR ++ G+ S+SL I V
Sbjct: 105 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 164
Query: 112 GREDRGIYQCIA 123
D G Y C A
Sbjct: 165 KLSDSGRYDCEA 176
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIP----------GRTSST 104
+VD+ P + + S F C++ D+ I+WF +G ++ S+
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+L I +D GIY+C+ DG ++ + +++
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>pdb|1ZVO|A Chain A, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
pdb|1ZVO|B Chain B, Semi-Extended Solution Structure Of Human Myeloma
Immunoglobulin D Determined By Constrained X-Ray
Scattering
Length = 214
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
LAI G+ +ED Y C++ + GG T V Q V + PP A
Sbjct: 74 LAISGLRSEDEADYYCAAWDDSLWVFGGGTTLTVLSQPKAAPSVTLFPPSSEELQANKAT 133
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 134 LVCLISDFYPGAVTVAWKADSSPVKAGVETTT 165
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 88 IAWFKDGRQI----------PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
I W++ G+++ GRT + +++ +ED G+Y CIA G+V + S++L
Sbjct: 39 IKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEE--QEDEGVYTCIATNEVGEV-ETSSKL 95
Query: 138 QLGGT 142
L T
Sbjct: 96 LLQAT 100
>pdb|2H1P|L Chain L, The Three-Dimensional Structures Of A Polysaccharide
Binding Antibody To Cryptococcus Neoformans And Its
Complex With A Peptide From A Phage Display Library:
Implications For The Identification Of Peptide Mimotopes
Length = 219
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDQGVYFCSQSTHVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 7 LPGPR-TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+P P + P+++++ ++E SGTY C+ N G +RL V P
Sbjct: 165 MPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 7 LPGPR-TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+P P + P+++++ ++E SGTY C+ N G +RL V P
Sbjct: 167 MPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 215
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSS 37
P RT ++G L I+G T DSG Y C+++
Sbjct: 42 PNNRTVLIGEYLQIKGATPRDSGLYACTAA 71
>pdb|1OPG|L Chain L, Opg2 Fab Fragment
pdb|1BM3|L Chain L, Immunoglobulin Opg2 Fab-Peptide Complex
Length = 214
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN GG + E++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGMYFCQQSNSWPLTFGGGSKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIP----------GRTSST 104
+VD+ P + + S F C++ D+ I+WF +G ++ S+
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+L I +D GIY+C+ DG ++ + +++
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>pdb|3D9A|L Chain L, High Resolution Crystal Structure Structure Of Hyhel10 Fab
Complexed To Hen Egg Lysozyme
Length = 213
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN GG E++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|3HFM|L Chain L, Structure Of An Antibody-Antigen Complex. Crystal
Structure Of The HyHEL-10 Fab-Lysozyme Complex
Length = 214
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN GG E++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|2ZCH|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 215
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V ED+ TY C SN GG E++ + P V + PP G A+
Sbjct: 77 LNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|2ZCK|L Chain L, Crystal Structure Of A Ternary Complex Between Psa, A
Substrat-Acyl Intermediate And An Activating Antibody
pdb|2ZCL|L Chain L, Crystal Structure Of Human Prostate Specific Antigen
Complexed With An Activating Antibody
Length = 218
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V ED+ TY C SN GG E++ + P V + PP G A+
Sbjct: 77 LNIQPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3UO1|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3UYR|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V4U|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
pdb|3V52|L Chain L, Structure Of A Monoclonal Antibody Complexed With Its
Mhc-I Antigen
Length = 218
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1UWE|L Chain L, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWE|U Chain U, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWE|X Chain X, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
Length = 213
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V +ED Y C NI GG E++ V+ P V + PP G+A+
Sbjct: 74 LTISNVNSEDLAEYFCQQYNIYPVTFGGGTKLEIKRTVAAP-SVFIFPPSAEQLASGTAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 133 VVCLLNNFYPREAAVQWKVDNALQSGNSQESVTEQDSADSTYSLSSTLTLSKADYEAHAV 192
Query: 119 YQC 121
Y C
Sbjct: 193 YAC 195
>pdb|1XGP|A Chain A, Structure For Antibody Hyhel-63 Y33a Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGQ|A Chain A, Structure For Antibody Hyhel-63 Y33v Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGR|A Chain A, Structure For Antibody Hyhel-63 Y33i Mutant Complexed With
Hen Egg Lysozyme
pdb|1XGT|A Chain A, Structure For Antibody Hyhel-63 Y33l Mutant Complexed With
Hen Egg Lysozyme
Length = 215
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN GG E++ + P V + PP G A+
Sbjct: 74 LSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|1DQJ|A Chain A, Crystal Structure Of The Anti-Lysozyme Antibody Hyhel-63
Complexed With Hen Egg White Lysozyme
pdb|1DQM|L Chain L, Crystal Structure Of Anti-Lysozyme Antibody
pdb|1DQQ|A Chain A, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1DQQ|C Chain C, Crystal Structure Of Anti-Lysozyme Antibody Hyhel-63
pdb|1NBY|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K96a
pdb|1NBZ|A Chain A, Crystal Structure Of Hyhel-63 Complexed With Hel Mutant
K97a
pdb|1NDG|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-8
Complexed With Its Antigen Lysozyme
pdb|1NDM|A Chain A, Crystal Structure Of Fab Fragment Of Antibody Hyhel-26
Complexed With Lysozyme
pdb|1XGU|A Chain A, Structure For Antibody Hyhel-63 Y33f Mutant Complexed With
Hen Egg Lysozyme
Length = 214
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN GG E++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP-------LLSVHLDGS 71
L I VT +SG Y ++N G+AT+ L V + + PP ++V
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLV----KAETAPPNFVQRLQSMTVRQGSQ 120
Query: 72 ANFQCEITPYDSGPYLIAWFKDGR--------QIPGRTSSTSLVINPVGREDRGIYQCIA 123
Q +T + ++ +++DG QI SL+I ED G Y A
Sbjct: 121 VRLQVRVTGIPTP--VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNA 178
Query: 124 RRSDGDVAQGSAEL 137
S G A +AEL
Sbjct: 179 TNSVGR-ATSTAEL 191
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 71 SANFQCE-ITPYDSGPYLIAWFKD--------GRQIPGRTSSTSLVINPVGREDRGIYQC 121
S NF+C+ +TP +W KD ++ + + T + +G +D GIY C
Sbjct: 20 SLNFECDKMTPKSE----FSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSC 75
Query: 122 IARRSDG 128
+DG
Sbjct: 76 DVTDTDG 82
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 64 LSVHLDGSAN--FQCEITPYDSGPYLIAWFKDGRQIP------GRTSSTSLVINPVGRED 115
LS + G N +C++ + I W+KD R+I + +L+I ++D
Sbjct: 229 LSWEVTGECNVLLKCKVANIKKETH-IVWYKDEREISVDEKHDFKDGICTLLITEFSKKD 287
Query: 116 RGIYQCIARRSDG 128
GIY+ I + G
Sbjct: 288 AGIYEVILKDDRG 300
>pdb|1MLB|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme
pdb|1MLC|A Chain A, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
pdb|1MLC|C Chain C, Monoclonal Antibody Fab D44.1 Raised Against Chicken Egg-
White Lysozyme Complexed With Lysozyme
Length = 214
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN GG E++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGMYFCQQSNSWPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|1FSK|B Chain B, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|E Chain E, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|H Chain H, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|K Chain K, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
Length = 214
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 3 PLLVLPGPRTRVLGP-------------ILAIEGVTAEDSGTYRCSSS-----NIGGEAT 44
P L+L GP R G L I V AED Y C S GG
Sbjct: 44 PKLLLYGPSNRYTGVPDRFTGSGSTTDFTLTISSVQAEDLADYHCGQSYSYPYTFGGGTK 103
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQ 96
E++ + P V + PP G A+ C + + + W DG +
Sbjct: 104 LEIKRADAAP-TVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSE 154
>pdb|3IJY|A Chain A, Structure Of S67-27 In Complex With Kdo(2.8)kdo
pdb|3IJY|C Chain C, Structure Of S67-27 In Complex With Kdo(2.8)kdo
Length = 218
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C SN GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|2J6E|L Chain L, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|M Chain M, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 234
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 93 LAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 152
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW DG +
Sbjct: 153 ATLVCLISDFFPGAVTVAWKADGAPV 178
>pdb|3IKC|A Chain A, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
pdb|3IKC|C Chain C, Structure Of S67-27 In Complex With
Kdo(2.8)-7-O-Methyl-Kdo
Length = 218
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C SN GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|1DBA|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBB|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBJ|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBK|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBM|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|2DBL|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
Length = 216
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S+ GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGIYFCSQSSHVPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1A6T|A Chain A, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
pdb|1A6T|C Chain C, Fab Fragment Of Mab1-Ia Monoclonal Antibody To Human
Rhinovirus 14 Nim-Ia Site
Length = 210
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I GV AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 72 LTISGVEAEDAATYYCQQYSSHPLTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|3IJH|A Chain A, Structure Of S67-27 In Complex With Ko
pdb|3IJH|C Chain C, Structure Of S67-27 In Complex With Ko
pdb|3IJS|A Chain A, Structure Of S67-27 In Complex With Tsbp
pdb|3IJS|C Chain C, Structure Of S67-27 In Complex With Tsbp
Length = 219
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C SN GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSNNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|4G6F|L Chain L, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|D Chain D, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 215
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 19 LAIEGVTAEDSGTYRCSS--------SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
L I G AED Y CSS S GG V Q V + PP
Sbjct: 72 LTISGAQAEDDAEYYCSSRDKSGSRLSVFGGGTKLTVLSQPKAAPSVTLFPPSSEELQAN 131
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 132 KATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 166
>pdb|3H42|L Chain L, Crystal Structure Of Pcsk9 In Complex With Fab From Ldlr
Competitive Antibody
Length = 217
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSS-------SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ AED Y C S S GG V Q V + PP
Sbjct: 75 LAITGLQAEDEADYYCQSYDSSLSGSVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|1RMF|L Chain L, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 219
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPLTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 62/155 (40%), Gaps = 35/155 (22%)
Query: 6 VLPGPRTRV-----LGPI-LAIEGVTAEDSGTYRCSSSNIGGEATAE----------VRL 49
+ GP+ ++ G I + +E + ED GTY + G+AT +L
Sbjct: 44 IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHSTVVLVGDVFKKL 101
Query: 50 QVSTPYR----VDVNPP----LLSVHLDGSAN--FQCEITPYDSGPYLIAWFKDGRQIP- 98
Q ++ + P LS + G N +C++ + I W+KD R+I
Sbjct: 102 QKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETH-IVWYKDEREISV 160
Query: 99 -----GRTSSTSLVINPVGREDRGIYQCIARRSDG 128
+ +L+I ++D GIY+ I + G
Sbjct: 161 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 195
>pdb|3PP3|L Chain L, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP3|K Chain K, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
pdb|3PP4|L Chain L, Epitope Characterization And Crystal Structure Of Ga101
Provide Insights Into The Molecular Basis For The Type I
TYPE II Distinction Of Anti- Cd20 Antibodies
Length = 219
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYYCAQNLELPYTFGGGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1FLR|L Chain L, 4-4-20 Fab Fragment
Length = 219
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 64 LSVHLDGSAN--FQCEITPYDSGPYLIAWFKDGRQIP------GRTSSTSLVINPVGRED 115
LS + G N +C++ +++ W+KD R+I + +L+I ++D
Sbjct: 14 LSWEVTGECNVLLKCKVANIKKETHIV-WYKDEREISVDEKHDFKDGICTLLITEFSKKD 72
Query: 116 RGIYQCIARRSDG 128
GIY+ I + G
Sbjct: 73 AGIYEVILKDDRG 85
>pdb|4FAB|L Chain L, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 219
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1T66|L Chain L, The Structure Of Fab With Intermediate Affinity For
Fluorescein.
pdb|1T66|C Chain C, The Structure Of Fab With Intermediate Affinity For
Fluorescein
Length = 219
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1AQK|L Chain L, Three-Dimensional Structure Of A Human Fab With High
Affinity For Tetanus Toxoid
Length = 216
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCS------SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
LAI G+ AED Y C S+ GG V Q V + PP A
Sbjct: 75 LAITGLQAEDEADYYCQSYDSSLSARFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPV 159
>pdb|3TT1|L Chain L, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|M Chain M, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 218
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V ED+ TY C SN GG E++ + P V + PP G A+
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
L VT +D+G Y C +N G TA L V T
Sbjct: 370 LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVGT 404
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 88 IAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDV 130
IAW+K G +P + + +L I V ED G Y C+A G +
Sbjct: 254 IAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI 301
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVD 58
L I V+ EDSG Y C +SN G + ++V + PY +D
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD 317
>pdb|1IQW|L Chain L, Crystal Structure Of The Fab Fragment Of The Mouse Anti-
Human Fas Antibody Hfe7a
Length = 218
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V ED+ TY C SN GG E++ + P V + PP G A+
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3ULS|L Chain L, Crystal Structure Of Fab12
pdb|3ULS|A Chain A, Crystal Structure Of Fab12
Length = 213
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I G AED Y CSS + GG V Q V + PP A
Sbjct: 72 LTISGTQAEDEADYYCSSYDDPNFQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 131
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 132 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 164
>pdb|1C1E|L Chain L, Crystal Structure Of A Diels-alderase Catalytic Antibody
1e9 In Complex With Its Hapten
Length = 216
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 18 ILAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
IL I V AED G Y C S GG E++ + P V + PP G A
Sbjct: 77 ILKISRVEAEDLGVYFCFQSTHFFPTFGGGTKLEIKSADAAP-TVSIFPPSSEQLTSGGA 135
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQ 96
+ C + + + W DG +
Sbjct: 136 SVVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 88 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRS 126
I W+KD + P T S L P ED G Y C+ R S
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 84
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 88 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRS 126
I W+KD + P T S L P ED G Y C+ R S
Sbjct: 40 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 86
>pdb|3ULU|C Chain C, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|C Chain C, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 213
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I G AED Y CSS + GG V Q V + PP A
Sbjct: 72 LTISGTQAEDEADYYCSSYDDPNFQVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 131
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 132 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 164
>pdb|3NPS|C Chain C, Crystal Structure Of Membrane-Type Serine Protease 1
(Mt-Sp1) In Complex With The Fab Inhibitor S4
Length = 211
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
+LAI G+ +ED Y C S +I GG V V+ P V + PP G+A
Sbjct: 71 VLAITGLQSEDEADYYCQSRDISQYVFGGGTKLTVLRTVAAP-SVFIFPPSDEQLKSGTA 129
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRG 117
+ C + + + W D G + S++L ++ E
Sbjct: 130 SVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK 189
Query: 118 IYQC 121
+Y C
Sbjct: 190 VYAC 193
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 88 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRS 126
I W+KD + P T S L P ED G Y C+ R S
Sbjct: 38 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 84
>pdb|8FAB|A Chain A, Crystal Structure Of The Fab Fragment From The Human
Myeloma Immunoglobulin Igg Hil At 1.8 Angstroms
Resolution
pdb|8FAB|C Chain C, Crystal Structure Of The Fab Fragment From The Human
Myeloma Immunoglobulin Igg Hil At 1.8 Angstroms
Resolution
Length = 212
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 21 IEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
I GV AED Y C S+S GG V Q V + PP A
Sbjct: 74 ISGVQAEDEADYYCQAWDNSASIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLV 133
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D I +T+
Sbjct: 134 CLISDFYPGAVTVAWKADSSPIKAGVETTT 163
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 88 IAWFKDGRQIPGRTSSTS--------LVINPVGREDRGIYQCIARRS 126
I W+KD + P T S L P ED G Y C+ R S
Sbjct: 35 ITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNS 81
>pdb|3BSZ|L Chain L, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
pdb|3BSZ|M Chain M, Crystal Structure Of The Transthyretin-Retinol Binding
Protein-Fab Complex
Length = 215
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C SN GG E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQSNEDPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|4I77|L Chain L, Lebrikizumab Fab Bound To Il-13
Length = 218
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED Y C +N GG E++ V+ P V + PP G+A+
Sbjct: 77 LTISSLQAEDVAVYYCQQNNEDPRTFGGGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 136 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 195
Query: 119 YQC 121
Y C
Sbjct: 196 YAC 198
>pdb|1M71|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|A Chain A, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
pdb|1PZ5|A Chain A, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 215
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y CS + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQTTHVPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|2OSL|L Chain L, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
pdb|2OSL|B Chain B, Crystal Structure Of Rituximab Fab In Complex With An
Epitope Peptide
Length = 213
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C +SN GG E++ V+ P V + PP G+A+
Sbjct: 72 LTISRVEAEDAATYYCQQWTSNPPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 131 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 190
Query: 119 YQC 121
Y C
Sbjct: 191 YAC 193
>pdb|2VL5|B Chain B, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2VL5|D Chain D, Structure Of Anti-Collagen Type Ii Fab Ciic1
pdb|2Y5T|B Chain B, Crystal Structure Of The Pathogenic Autoantibody Ciic1 In
Complex With The Triple-Helical C1 Peptide
Length = 218
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C SN GG E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQSNEDPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
SL+I PV D GIY CIA G Q S L+L
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAG---QNSFSLEL 98
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
L IE VT+ D+G Y C ++N G+ + + L V+
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
>pdb|3NH7|L Chain L, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|M Chain M, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|N Chain N, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
pdb|3NH7|O Chain O, Crystal Structure Of The Neutralizing Fab Fragment Abd1556
Bound To The Bmp Type I Receptor Ia
Length = 213
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATA-------EVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G AED Y CS+ + G T V Q V + PP
Sbjct: 72 LTISGTQAEDEADYYCSTFTMSGNGTVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 165
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
L VT +D+G Y C SN G TA L V+
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
>pdb|2R69|L Chain L, Crystal Structure Of Fab 1a1d-2 Complexed With E-Diii Of
Dengue Virus At 3.8 Angstrom Resolution
Length = 212
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C +N+ GG E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQTNVDPWAFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|2R29|L Chain L, Neutralization Of Dengue Virus By A Serotype
Cross-Reactive Antibody Elucidated By Cryoelectron
Microscopy And X-Ray Crystallography
Length = 217
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C +N+ GG E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQTNVDPWAFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|1JVK|A Chain A, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1JVK|B Chain B, Three-Dimensional Structure Of An Immunoglobulin Light
Chain Dimer Acting As A Lethal Amyloid Precursor
pdb|1LGV|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LGV|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 100k
pdb|1LHZ|A Chain A, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
pdb|1LHZ|B Chain B, Structure Of A Human Bence-Jones Dimer Crystallized In
U.S. Space Shuttle Mission Sts-95: 293k
Length = 216
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G+ AED Y CSS + GG V Q V + PP
Sbjct: 75 LTISGLQAEDEADYYCSSYDGSSTSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|1IAI|M Chain M, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|L Chain L, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 215
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C N GG E++ + P V + PP G A+
Sbjct: 74 LTISSMEAEDAATYYCQQWNSYPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|3GHE|L Chain L, Crystal Structure Of Anti-Hiv-1 Fab 537-10d In Complex
With V3 Peptide Mn
Length = 217
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G+ AED Y CSS GG V Q V + PP
Sbjct: 75 LTISGLQAEDEADYHCSSYTSSTPYVLFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|1A4K|L Chain L, Diels Alder Catalytic Antibody With Transition State
Analogue
pdb|1A4K|A Chain A, Diels Alder Catalytic Antibody With Transition State
Analogue
Length = 217
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDLGVYFCSQVTHVPPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1NFP|A Chain A, Structural Refinement Of The Non-Fluorescent Flavoprotein
From Photobacterium Leiognathi At 1.60 Angstroms
Resolution
Length = 228
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
+T ++ G + + ++ G+Q P T S +L + ED IY +A
Sbjct: 1 MTKWNYGVFFLNFYHVGQQEPSLTMSNALETLRIIDEDTSIYDVVA 46
>pdb|1SY6|A Chain A, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 204
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-STSLVINPVGREDRGIYQC 121
DGS C D+ I WFKDG+ I T + ++ RG+YQC
Sbjct: 18 DGSVLLTC-----DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQC 66
>pdb|3MCL|L Chain L, Anti-Beta-Amyloid Antibody C706 Fab In Space Group P21
Length = 212
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 19 LAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + AED+ TY C SS G E++ V+ P V + PP G+A+
Sbjct: 72 LTISNMEAEDAATYFCQNWRSSPTFGAGTKLELKRTVAAP-SVFIFPPSDEQLKSGTASV 130
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIY 119
C + + + W D G + S++L ++ E +Y
Sbjct: 131 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY 190
Query: 120 QC 121
C
Sbjct: 191 AC 192
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 118
V P +V G+ CE+ P P I W KDG +P S ++ +G +D+G
Sbjct: 15 VEPEGGAVAPGGTVTLTCEV-PAQPSPQ-IHWMKDGVPLPLPPSPVLILPE-IGPQDQGT 71
Query: 119 YQCIARRS 126
Y C+A S
Sbjct: 72 YSCVATHS 79
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 118
V P +V G+ CE+ P P I W KDG +P S ++ +G +D+G
Sbjct: 8 VEPEGGAVAPGGTVTLTCEV-PAQPSPQ-IHWMKDGVPLPLPPSPVLILPE-IGPQDQGT 64
Query: 119 YQCIARRS 126
Y C+A S
Sbjct: 65 YSCVATHS 72
>pdb|3O11|L Chain L, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
pdb|3O11|A Chain A, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
Length = 212
Score = 29.3 bits (64), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 19 LAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + AED+ TY C SS G E++ V+ P V + PP G+A+
Sbjct: 72 LTISNMEAEDAATYFCQNWRSSPTFGAGTKLELKRTVAAP-SVFIFPPSDEQLKSGTASV 130
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIY 119
C + + + W D G + S++L ++ E +Y
Sbjct: 131 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY 190
Query: 120 QC 121
C
Sbjct: 191 AC 192
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVD--VNPPLLSVHLDGSANFQCE 77
++G +D G Y C + N G+A + LQ++ R D V P V +A +C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-LRDDFRVEPKDTRVAKGETALLECG 131
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSST-------------SLVINPVGREDRGIYQCIAR 124
P LI W KDG + + + +L+I+ V D G Y+CIA+
Sbjct: 132 PPKGIPEPTLI-WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 125 RSDGDVAQGSAEL 137
G A+L
Sbjct: 191 NLVGTRESSYAKL 203
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVI 108
Q +P R+ +P L V + A C++ + P I WFKDG + + V
Sbjct: 6 QYQSP-RIIEHPTDLVVKKNEPATLNCKV---EGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 109 NPVG------------REDRGIYQCIARRSDGDVAQGSAELQLGGTRN 144
G +D G Y C+A+ G A LQ+ R+
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD 109
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVD--VNPPLLSVHLDGSANFQCE 77
++G +D G Y C + N G+A + LQ++ R D V P V +A +C
Sbjct: 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV-LRDDFRVEPKDTRVAKGETALLECG 131
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSST-------------SLVINPVGREDRGIYQCIAR 124
P LI W KDG + + + +L+I+ V D G Y+CIA+
Sbjct: 132 PPKGIPEPTLI-WIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 125 RSDGDVAQGSAEL 137
G A+L
Sbjct: 191 NLVGTRESSYAKL 203
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVI 108
Q +P R+ +P L V + A C++ + P I WFKDG + + V
Sbjct: 6 QYQSP-RIIEHPTDLVVKKNEPATLNCKV---EGKPEPTIEWFKDGEPVSTNEKKSHRVQ 61
Query: 109 NPVG------------REDRGIYQCIARRSDGDVAQGSAELQLGGTRN 144
G +D G Y C+A+ G A LQ+ R+
Sbjct: 62 FKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD 109
>pdb|3LRS|L Chain L, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|B Chain B, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|D Chain D, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
pdb|3LRS|F Chain F, Structure Of Pg16, An Antibody With Broad And Potent
Neutralization Of Hiv-1
Length = 211
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I G+ ED G Y CSS GG V Q V + PP A
Sbjct: 73 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 132
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 133 TLVCLISDFYPGAVTVAWKADSSPV 157
>pdb|2B0S|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Mn Peptide
pdb|2B1A|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug1033 Peptide
pdb|2B1H|L Chain L, Crystal Structure Analysis Of Anti-Hiv-1 V3 Fab 2219 In
Complex With Ug29 Peptide
Length = 215
Score = 29.3 bits (64), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSN---------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
LAI G+ ED G Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLRPEDEGDYYCAAWDDSRGGPDWVFGGGTKLTVLAQPKAAPSVTLFPPSSEELQA 133
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 NKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 169
>pdb|3TNM|L Chain L, Crystal Structure Of A32 Fab, An Adcc Mediating Anti-Hiv-1
Antibody
pdb|3TNM|B Chain B, Crystal Structure Of A32 Fab, An Adcc Mediating Anti-Hiv-1
Antibody
Length = 216
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ AED Y CSS GG V Q V + PP A
Sbjct: 75 LTVSGLQAEDEAEYYCSSYTDIHNFVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|3MUG|A Chain A, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|C Chain C, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|E Chain E, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|G Chain G, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|I Chain I, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
pdb|3MUG|K Chain K, Crystal Structure Of Human Fab Pg16, A Broadly Reactive
And Potent Hiv-1 Neutralizing Antibody
Length = 216
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I G+ ED G Y CSS GG V Q V + PP A
Sbjct: 75 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPV 159
>pdb|3DBX|A Chain A, Structure Of Chicken Cd1-2 With Bound Fatty Acid
Length = 289
Score = 29.3 bits (64), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 61 PPLLSVHLDGSANFQ----CEITPYDSGPYLIAWFKDGRQIP 98
PP+ V + Q C +T + P + W +DGR++P
Sbjct: 190 PPMAVVFARTAGQVQLLLVCRVTSFYPRPIAVTWLRDGREVP 231
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 10 PRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
PR VL L V D+G Y C +N+ G + A L VS+
Sbjct: 54 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
>pdb|1MNU|L Chain L, Unliganded Bactericidal Antibody Against Neisseria
Meningitidis
pdb|2MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
pdb|1MPA|L Chain L, Bactericidal Antibody Against Neisseria Meningitidis
Length = 219
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G + CS S GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVFFCSQSTHVPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQV 51
IL I V D+GTY C+ SN+ + TA + +QV
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>pdb|2XQB|L Chain L, Crystal Structure Of Anti-Il-15 Antibody In Complex With
Human Il-15
Length = 211
Score = 29.3 bits (64), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCS------SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
LAI G+ +ED Y C+ S + G T LQ V + PP A
Sbjct: 70 LAISGLRSEDEADYYCAWYDRELSEWVFGGGTKLTVLQPKAAPSVTLFPPSSEELQANKA 129
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 130 TLVCLISDFYPGAVTVAWKADSSPV 154
>pdb|3QCT|L Chain L, Crystal Structure Of The Humanized Apo Lt3015
Anti-Lysophosphatidic Acid Antibody Fab Fragment
pdb|3QCU|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCU|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (14:0)
pdb|3QCV|L Chain L, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
pdb|3QCV|M Chain M, Crystal Structure Of The Lt3015 Antibody Fab Fragment In
Complex With Lysophosphatidic Acid (18:2)
Length = 218
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S G E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYFCSQSTHFPFTFGQGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|3MME|L Chain L, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|B Chain B, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
pdb|3MME|D Chain D, Structure And Functional Dissection Of Pg16, An Antibody
With Broad And Potent Neutralization Of Hiv-1
Length = 216
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I G+ ED G Y CSS GG V Q V + PP A
Sbjct: 75 LTISGLHIEDEGDYFCSSLTDRSHRIFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPV 159
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1ACY|L Chain L, Crystal Structure Of The Principal Neutralizing Site Of
Hiv- 1
pdb|1AI1|L Chain L, Hiv-1 V3 Loop Mimic
Length = 215
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V A+D+ TY C +N G E+R + P V + PP G A+
Sbjct: 77 LTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3G04|A Chain A, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
Length = 216
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C+S + GG V Q V + PP
Sbjct: 74 LAIRGLQSEDEADYYCTSWDDSLDSQLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
IL ++ +T D GTYRC N GE ++ L V
Sbjct: 58 AILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>pdb|4FQJ|L Chain L, Influenza BFLORIDA42006 HEMAGGLUTININ FAB CR8071 COMPLEX
Length = 216
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEADYYCATWDDSLDGWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|4DTG|L Chain L, Hemostatic Effect Of A Monoclonal Antibody Mab 2021
Blocking The Interaction Between Fxa And Tfpi In A
Rabbit Hemophilia Model
Length = 219
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYYCLQATHFPQTFGGGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|2BRR|L Chain L, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
pdb|2BRR|X Chain X, Complex Of The Neisserial Pora P1.4 Epitope Peptide And
Two Fab-Fragments (Antibody Mn20b9.34)
Length = 215
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 74 LTISSVEAEDAATYYCQQYSGYPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|3TWC|L Chain L, Crystal Structure Of Broad And Potent Hiv-1 Neutralizing
Antibody Pgt127 In Complex With Man9
Length = 211
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS------SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ A+D G Y CSS GG V Q V + PP A
Sbjct: 70 LTVSGLQADDEGVYYCSSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 129
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 130 TLVCLISDFYPGAVTVAWKADSSPV 154
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
L I ED+G YRC +++ G EAT + + +R V+P D A
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED--AEVV 119
Query: 76 CEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVI-------NPVGREDRGIYQCIAR 124
C ++ S P ++W ++ + + ++ + + D GIY+C R
Sbjct: 120 CRVS---SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 173
>pdb|4FQK|F Chain F, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
pdb|4FQK|L Chain L, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059 COMPLEX
Length = 216
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEADYYCATWDDSLNGWVFGGGTKLTVLRQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 28 DSGTYRCSSSNIGGEATAE-VRLQVSTPYRVDVNPPLLS------VHLDG-SANFQCEIT 79
DS TY C + G E+T+ + L+V+ RV PP + V + G +A C T
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVN---RVHPEPPQIKLEPSKLVRIRGEAAQIVCSAT 211
Query: 80 PYDSGPYLIAWFKDGR-QIPGRTSST--------SLVINPVGREDRGIYQCIARRSDG 128
+ G +I D + +IP + +L +N V +D GIY C+A G
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L++ V +D+G Y C +SN G TA + QV
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 21/127 (16%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQVSTPYRVDVNPPLLS 65
G R+R L I ED+G YRC +++ G EAT + + +R V+P
Sbjct: 55 GVRSR-----LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFK 109
Query: 66 VHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSSTSLVI-------NPVGREDRG 117
D A C ++ S P ++W ++ + + ++ + + D G
Sbjct: 110 QGED--AEVVCRVS---SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEG 164
Query: 118 IYQCIAR 124
IY+C R
Sbjct: 165 IYRCEGR 171
>pdb|2EH8|L Chain L, Crystal Structure Of The Complex Of Humanized Kr127 Fab
And Pres1 Peptide Epitope
Length = 218
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 28 DSGTYRCSSSNIGGEATAE-VRLQVSTPYRVDVNPPLLS------VHLDG-SANFQCEIT 79
DS TY C + G E+T+ + L+V+ RV PP + V + G +A C T
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVN---RVHPEPPQIKLEPSKLVRIRGEAAQIVCSAT 211
Query: 80 PYDSGPYLIAWFKDGR-QIPGRTSST--------SLVINPVGREDRGIYQCIARRSDG 128
+ G +I D + +IP + +L +N V +D GIY C+A G
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L++ V +D+G Y C +SN G TA + QV
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|1ORQ|A Chain A, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 215
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 74 LTISSVEAEDTATYYCQQYSGNPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+LA+ VT D+G Y C SN G+A L V
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPL 63
G + R L +E V D G Y C N G L V +P+R + P
Sbjct: 68 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPAN 127
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFK 92
S + G F C++ D+ P+ I W K
Sbjct: 128 ASTVVGGDVEFVCKVYS-DAQPH-IQWIK 154
>pdb|3MA9|L Chain L, Crystal Structure Of Gp41 Derived Protein Complexed With
Fab 8066
pdb|3MAC|L Chain L, Crystal Structure Of Gp41-Derived Protein Complexed With
Fab 8062
Length = 213
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G AED Y C+S + GG V Q V + PP
Sbjct: 72 LTISGTQAEDEADYYCASWDSMTVDGVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 165
>pdb|2EH7|L Chain L, Crystal Structure Of Humanized Kr127 Fab
Length = 219
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYYCVQGTHFPQTFGGGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+LA+ VT D+G Y C SN G+A L V
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|25C8|L Chain L, Catalytic Antibody 5c8, Fab-Hapten Complex
pdb|35C8|L Chain L, Catalytic Antibody 5c8, Fab-Inhibitor Complex
Length = 212
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C S GG E++ + P V + PP G A+
Sbjct: 74 LTISSMEAEDAATYYCHQYHRSPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|15C8|L Chain L, Catalytic Antibody 5c8, Free Fab
Length = 213
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C S GG E++ + P V + PP G A+
Sbjct: 74 LTISSMEAEDAATYYCHQYHRSPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|4F9L|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9L|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 20.1 Single Chain Antibody
pdb|4F9P|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|B Chain B, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 220
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQ 75
L I VTA DSG Y C + A V L+V+ + VDV + DG + +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKG-----YKDGGIHLE 139
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
C T + P + G IP V PV + G+Y A
Sbjct: 140 CRSTGWYPQPQIQWSNNKGENIP-------TVEAPVVADGVGLYAVAA 180
>pdb|4F80|A Chain A, Crystal Structure Of The Human Btn3a1 Ectodomain
Length = 226
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQ 75
L I VTA DSG Y C + A V L+V+ + VDV + DG + +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKG-----YKDGGIHLE 139
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
C T + P + G IP V PV + G+Y A
Sbjct: 140 CRSTGWYPQPQIQWSNNKGENIP-------TVEAPVVADGVGLYAVAA 180
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 77 EITPYDSG--PYLIAWFKDGRQ------IPGRTSSTSLVINPVGREDRGIYQCIA 123
E++ SG P I WFKD I + + +L I V +ED G+Y C A
Sbjct: 29 EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA 83
>pdb|1AXT|L Chain L, Immune Versus Natural Selection: Antibody Aldolases With
The Rates Of Natural Enzymes
Length = 216
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQGTHVPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1QFU|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 217
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQNTHVPYTFGGGTKLEIKRADAAP-TVSIFPPSKIQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+LA+ VT D+G Y C SN G+A L V
Sbjct: 185 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
>pdb|3S62|L Chain L, Structure Of Fab Fragment Of Malaria Transmission Blocking
Antibody 2a8 Against P. Vivax P25 Protein
Length = 213
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C SSN GG E++ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYYCQQWSSNPPTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|3FO9|L Chain L, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
pdb|3FO9|A Chain A, Crystal Structure Of Aldolase Antibody 33f12 Fab' In
Complex With Hapten 1,3-Diketone
Length = 219
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQGTHVPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1H3P|L Chain L, Structural Characterisation Of A Monoclonal Antibody
Specific For The Pres1 Region Of The Hepatitis B Virus
Length = 240
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYSLYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|4AG4|L Chain L, Crystal Structure Of A Ddr1-Fab Complex
Length = 213
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C SSN GG E++ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYYCQQWSSNPYTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKSIAVKWKIDGSE 159
>pdb|3JVG|A Chain A, Crystal Structure Of Chicken Cd1-1
pdb|3JVG|B Chain B, Crystal Structure Of Chicken Cd1-1
Length = 281
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 76 CEITPYDSGPYLIAWFKDGRQIP 98
C +T + P + W +DGR++P
Sbjct: 201 CRVTSFYPRPIAVTWLRDGREVP 223
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 33/134 (24%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLD------GSA 72
L + G+ E++G YRC +A V+L+V V P + LD
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEV-------VASPASRLLLDQVGMKENED 136
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIP-------------------GRTSSTSLVINPVGR 113
+ CE + + I W K ++ P G + TS + +
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196
Query: 114 EDRG-IYQCIARRS 126
ED G +YQC+ R +
Sbjct: 197 EDPGTVYQCVVRHA 210
>pdb|2OLD|A Chain A, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P3(2)21 Crystal Form
pdb|2OLD|B Chain B, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P3(2)21 Crystal Form
pdb|2OMB|A Chain A, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P3(1)21 Crystal Form
pdb|2OMB|B Chain B, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P3(1)21 Crystal Form
pdb|2OMB|C Chain C, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P3(1)21 Crystal Form
pdb|2OMB|D Chain D, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P3(1)21 Crystal Form
pdb|2OMN|A Chain A, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P4(3)2(1)2 Crystal Form
pdb|2OMN|B Chain B, Bence Jones Kwr Protein- Immunoglobulin Light Chain Dimer,
P4(3)2(1)2 Crystal Form
Length = 217
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G+ AED Y CSS GG V Q V + PP
Sbjct: 75 LTISGLQAEDEADYYCSSYASGSTPRIFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|4GXU|N Chain N, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|P Chain P, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|R Chain R, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|T Chain T, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|V Chain V, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|X Chain X, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXV|L Chain L, Crystal Structure Of Anti-Influenza Virus Antibody 1f1
pdb|4GXV|M Chain M, Crystal Structure Of Anti-Influenza Virus Antibody 1f1
Length = 217
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSN--------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEAVYYCAAWDDSLSAHVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQAN 133
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 134 KATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|1CK0|L Chain L, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Unliganded Form
pdb|2CK0|L Chain L, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Complex With A Synthetic Cyclic Peptide
pdb|3CK0|L Chain L, Anti-Anti-Idiotypic Antibody Against Human Angiotensin Ii,
Complex With Human Angiotensin Ii
Length = 216
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|3QG7|L Chain L, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 216
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V +ED G Y CS + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVESEDLGIYYCSQTTHVPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3FO1|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)ala Mutant)
pdb|3FO1|A Chain A, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)ala Mutant)
Length = 219
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ V+ P V + PP G+A+
Sbjct: 78 LKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1NSN|H Chain H, The Crystal Structure Of Antibody N10-Staphylococcal
Nuclease Complex At 2.9 Angstroms Resolution
Length = 210
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 18 ILAIEGVTAEDSGTYRCSSSN--IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
+ + VT ED+GT+ C+ N G T V +TP V P + +
Sbjct: 80 FMQLNSVTTEDTGTFYCTRGNGDWGQGTTLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLG 139
Query: 76 CEITPYDSGPYLIAW 90
C + Y P + W
Sbjct: 140 CLVKGYFPEPVTVTW 154
>pdb|4FQH|L Chain L, Crystal Structure Of Fab Cr9114
pdb|4FQH|B Chain B, Crystal Structure Of Fab Cr9114
pdb|4FQI|L Chain L, Crystal Structure Of Fab Cr9114 In Complex With A H5n1
Influenza Virus Hemagglutinin
pdb|4FQV|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQV|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H7 Influenza Hemagglutinin
pdb|4FQY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
Length = 216
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEAEYYCAAWDDSLKGAVFGGGTQLTVLGQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|3QG6|A Chain A, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|L Chain L, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 218
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V +ED G Y CS + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVESEDLGIYYCSQTTHVPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2ZUQ|B Chain B, Crystal Structure Of Dsbb-Fab Complex
pdb|2ZUQ|E Chain E, Crystal Structure Of Dsbb-Fab Complex
pdb|2LTQ|B Chain B, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
pdb|2LTQ|E Chain E, High Resolution Structure Of Dsbb C41s By Joint
Calculation With Solid-state Nmr And X-ray Data
Length = 239
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 99 LTISSVQAEDLAVYYCKQSYNLYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 157
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 158 VCFLNNFYPKDINVKWKIDGSE 179
>pdb|1MCB|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCB|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCC|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCC|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCD|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCD|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCE|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCE|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCF|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCF|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCH|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCH|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCI|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCI|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCJ|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCJ|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCK|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCK|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCL|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCL|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCN|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCN|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCQ|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCQ|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCR|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCR|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCS|A Chain A, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
pdb|1MCS|B Chain B, Principles And Pitfalls In Designing Site Directed Peptide
Ligands
Length = 216
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ AED Y CSS G V Q V + PP A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADGSPV 159
>pdb|1OB1|A Chain A, Crystal Structure Of A Fab Complex Whith Plasmodium
Falciparum Msp1-19
pdb|1OB1|D Chain D, Crystal Structure Of A Fab Complex Whith Plasmodium
Falciparum Msp1-19
Length = 215
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C S GG E++ + P V + PP G A+
Sbjct: 74 LTISSMEAEDAATYYCHQFHHSPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|3FO0|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Wild-Type)
Length = 219
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ V+ P V + PP G+A+
Sbjct: 78 LKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1FL6|L Chain L, The Hapten Complexed Germline Precursor To Sulfide Oxidase
Catalytic Antibody 28b4
pdb|1FL6|A Chain A, The Hapten Complexed Germline Precursor To Sulfide Oxidase
Catalytic Antibody 28b4
pdb|1FL5|L Chain L, The Unliganded Germline Precursor To The Sulfide Oxidase
Catalytic Antibody 28b4.
pdb|1FL5|A Chain A, The Unliganded Germline Precursor To The Sulfide Oxidase
Catalytic Antibody 28b4
Length = 217
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1Z3G|L Chain L, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|M Chain M, Crystal Structure Of Complex Between Pvs25 And Fab
Fragment Of Malaria Transmission Blocking Antibody 2a8
Length = 213
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ AED+ TY C SSN G E+ + P V + PP G A+
Sbjct: 72 LTISGMEAEDAATYYCQQWSSNPPTFGSGTKLEINRADTAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|3FO2|L Chain L, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)gln Mutant)
pdb|3FO2|A Chain A, Crystal Structure Of Hapten Complex Of Catalytic
Elimination Antibody 13g5 (Glu(L39)gln Mutant)
Length = 219
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ V+ P V + PP G+A+
Sbjct: 78 LKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1DCL|A Chain A, Mcg, A Lambda V Type Light-Chain Dimer (Bence-Jones
Protein), Crystallized From Ammonium Sulfate
pdb|1DCL|B Chain B, Mcg, A Lambda V Type Light-Chain Dimer (Bence-Jones
Protein), Crystallized From Ammonium Sulfate
Length = 216
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ AED Y CSS G V Q V + PP A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADGSPV 159
>pdb|4DGI|L Chain L, Structure Of Pom1 Fab Fragment Complexed With Human Prpc
Fragment 120- 230
Length = 213
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V +ED Y C SN GG E++ + P V + PP G A+
Sbjct: 73 LSINSVESEDIADYYCQQSNTWPYTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|2YKL|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With
Nicotine-11-Yl-Methyl-(4-Ethylamino-4-Oxo)-Butanoate
Length = 216
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG ++ Q V + PP
Sbjct: 74 LAISGLRSEDEADYYCAAWDDSLSAWVFGGGTQLDILGQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|3HZY|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo(2.4)kdo
Length = 219
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDIAVKWKIDGSE 159
>pdb|1SY6|L Chain L, Crystal Structure Of Cd3gammaepsilon Heterodimer In
Complex With Okt3 Fab Fragment
Length = 213
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ AED+ TY C SSN G E+ + P V + PP G A+
Sbjct: 72 LTISGMEAEDAATYYCQQWSSNPFTFGSGTKLEINRADTAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|1MCW|M Chain M, Three-Dimensional Structure Of A Hybrid Light Chain Dimer.
Protein Engineering Of A Binding Cavity
pdb|2MCG|1 Chain 1, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|2MCG|2 Chain 2, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|3MCG|1 Chain 1, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|3MCG|2 Chain 2, Three-Dimensional Structure Of A Light Chain Dimer
Crystallized In Water. Conformational Flexibility Of A
Molecule In Two Crystal Forms
pdb|1A8J|L Chain L, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
Aspartame
pdb|1A8J|H Chain H, Immunoglobulin Lambda Light Chain Dimer (Mcg) Complex With
Aspartame
Length = 216
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ AED Y CSS G V Q V + PP A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADGSPV 159
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN G E++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|3OKK|A Chain A, Crystal Structure Of S25-39 In Complex With Kdo(2.4)kdo
Length = 220
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|3OKD|A Chain A, Crystal Structure Of S25-39 In Complex With Kdo
pdb|3OKE|A Chain A, Crystal Structure Of S25-39 In Complex With Ko
pdb|3OKL|A Chain A, Crystal Structure Of S25-39 In Complex With Kdo(2.8)kdo
pdb|3OKM|A Chain A, Crystal Structure Of Unliganded S25-39
pdb|3OKN|A Chain A, Crystal Structure Of S25-39 In Complex With
Kdo(2.4)kdo(2.4)kdo
pdb|3OKO|A Chain A, Crystal Structure Of S25-39 In Complex With
Kdo(2.8)kdo(2.4)kdo
Length = 219
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|2G5B|A Chain A, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|C Chain C, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|E Chain E, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide.
pdb|2G5B|G Chain G, Crystal Structure Of The Anti-Bax Monoclonal Antibody 6a7
And A Bax Peptide
Length = 217
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 257
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 89 AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
A F+DG ++ T VINP GRE + + +A DG++++
Sbjct: 153 AGFQDGEEVSLETLKAKRVINPSGRERKLPLKILA---DGELSK 193
>pdb|1A3L|L Chain L, Catalysis Of A Disfavored Reaction: An Antibody Exo Diels-
Alderase-Tsa-Inhibitor Complex At 1.95 A Resolution
pdb|1RUQ|L Chain L, Crystal Structure (H) Of U.V.-Irradiated Diels-Alder
Antibody 13g5 Fab At Ph 8.0 With A Data Set Collected In
House.
pdb|1RUR|L Chain L, Crystal Structure (i) Of Native Diels-alder Antibody 13g5
Fab At Ph 8.0 With A Data Set Collected At Ssrl Beamline
9- 1
Length = 217
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDVGVYYCAQNLELPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1Q9O|A Chain A, S45-18 Fab Unliganded
pdb|1Q9O|C Chain C, S45-18 Fab Unliganded
pdb|1Q9W|A Chain A, S45-18 Fab Pentasaccharide Bisphosphate Complex
pdb|1Q9W|C Chain C, S45-18 Fab Pentasaccharide Bisphosphate Complex
Length = 219
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|1GGB|L Chain L, Major Antigen-Induced Domain Rearrangements In An Antibody
pdb|1GGC|L Chain L, Major Antigen-Induced Domain Rearrangements In An Antibody
Length = 215
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C SN G E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|4EOW|L Chain L, Crystal Structure Of A Disease-Associated Anti-Human
Gm-Csf Autoantibody Mb007
Length = 216
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLRSEDEADYYCATWDDSLSGRLFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|2VK2|A Chain A, Crystal Structure Of A Galactofuranose Binding Protein
Length = 306
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIA---WFKDG 94
+D P + +DG AN E+TP +GP A + KDG
Sbjct: 226 IDGVPDIYKAMMDGEANASVELTPNMAGPAFDALEKYKKDG 266
>pdb|1GGI|L Chain L, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
pdb|1GGI|M Chain M, Crystal Structure Of An Hiv-1 Neutralizing Antibody 50.1
In Complex With Its V3 Loop Peptide Antigen
Length = 218
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C SN G E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|1NQB|A Chain A, Trivalent Antibody Fragment
pdb|1NQB|C Chain C, Trivalent Antibody Fragment
Length = 256
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 30/134 (22%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ-----VSTPYRVDVNPPLLSVHLDGSAN 73
+ + +T+EDS Y C+ + G + + Q VS+ + P L V L A+
Sbjct: 81 MQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQAS 140
Query: 74 FQCEITP---YDSGPYLIAWF--KDGRQ--------------IPGRTSST------SLVI 108
C + + +G + W+ K G+ +P R S + +L I
Sbjct: 141 ISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI 200
Query: 109 NPVGREDRGIYQCI 122
+ V ED G+Y C
Sbjct: 201 SRVEAEDLGVYYCF 214
>pdb|1CGS|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|2CGR|L Chain L, Local And Transmitted Conformational Changes On
Complexation Of An Anti-Sweetener Fab
pdb|1YNK|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeteners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
pdb|1YNL|L Chain L, Identification Of Key Residues Of The Nc6.8 Fab Antibody
Fragment Binding To Synthetic Sweeterners: Crystal
Structure Of Nc6.8 Co-Crystalized With High Potency
Sweetener Compound Sc45647
Length = 219
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQGTHVPYTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2JB5|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-1
pdb|2JB6|A Chain A, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
pdb|2JB6|L Chain L, Fab Fragment In Complex With Small Molecule Hapten,
Crystal Form-2
Length = 216
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSS-------SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G+ AED Y C S S GG V Q V + PP
Sbjct: 75 LTISGLQAEDEADYYCRSWDSNLSYSVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW D +
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPV 160
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C SN G E++ + P V + PP G A+
Sbjct: 73 LSISSVETEDFGMYFCQQSNRWPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 28/136 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPLLSVHLDGSAN 73
L +E V D G Y C N G L V +P+R + P S + G
Sbjct: 70 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVE 129
Query: 74 FQCEITPYDSGPYLIAWFK-----------DG----RQIPGRTSSTS------LVINPVG 112
F C++ D+ P+ I W K DG + + +T+ L I V
Sbjct: 130 FVCKVYS-DAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 113 REDRGIYQCIARRSDG 128
ED G Y C+A S G
Sbjct: 188 FEDAGEYTCLAGNSIG 203
>pdb|3QEH|B Chain B, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|D Chain D, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|F Chain F, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|H Chain H, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 218
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 19 LAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y C S G E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYYCMQAKESPTFGQGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIY 119
C + + + W D G + S++L ++ E +Y
Sbjct: 137 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY 196
Query: 120 QC 121
C
Sbjct: 197 AC 198
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 51/136 (37%), Gaps = 28/136 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPLLSVHLDGSAN 73
L +E V D G Y C N G L V +P+R + P S + G
Sbjct: 69 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVE 128
Query: 74 FQCEITPYDSGPYLIAWFK-----------DG----RQIPGRTSSTS------LVINPVG 112
F C++ D+ P+ I W K DG + + +T+ L I V
Sbjct: 129 FVCKVYS-DAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 186
Query: 113 REDRGIYQCIARRSDG 128
ED G Y C+A S G
Sbjct: 187 FEDAGEYTCLAGNSIG 202
>pdb|2HKF|L Chain L, Crystal Structure Of The Complex Fab M75- Peptide
pdb|2HKH|L Chain L, Crystal Structure Of The Fab M75
Length = 219
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S G E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1UB5|L Chain L, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|B Chain B, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 214
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3CFB|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFB|A Chain A, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2 In Complex With Stilbene Hapten At 100k
pdb|3CFC|L Chain L, High-Resolution Structure Of Blue Fluorescent Antibody
Ep2-19g2
Length = 219
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDVGVYYCAQNLELPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|4DAG|L Chain L, Structure Of The Human Metapneumovirus Fusion Protein With
Neutralizing Antibody Identifies A Pneumovirus Antigenic
Site
Length = 213
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G A D Y C S++ GG T V Q V + PP A
Sbjct: 72 LTISGTQAMDEADYYCQAWDSSTAVFGGGTTLTVLGQPKAAPSVTLFPPSSEELQANKAT 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 132 LVCLISDFYPGAVTVAWKADSSPVKAGVETTT 163
>pdb|2Z91|B Chain B, Crystal Structure Of The Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9
pdb|2Z91|D Chain D, Crystal Structure Of The Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9
pdb|2Z92|B Chain B, Crystal Structure Of The Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9 In Complex With Ctx3c_abcde
pdb|2Z93|B Chain B, Crystal Structure Of Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9 In Complex With Ctx3c-Abcd
pdb|2Z93|D Chain D, Crystal Structure Of Fab Fragment Of Anti-Ciguatoxin
Antibody 10c9 In Complex With Ctx3c-Abcd
Length = 213
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C SSN G EV+ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYYCQQWSSNPPTFGAGTKLEVKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|2VQ1|A Chain A, Anti Trimeric Lewis X Fab54-5c10-A
pdb|2VQ1|E Chain E, Anti Trimeric Lewis X Fab54-5c10-A
Length = 217
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED G Y CS + GG E++ + P V + PP G A+
Sbjct: 78 LKISRMEAEDLGIYFCSQTTHVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2I9L|A Chain A, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|C Chain C, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|E Chain E, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
pdb|2I9L|G Chain G, Structure Of Fab 7d11 From A Neutralizing Antibody Against
The Poxvirus L1 Protein
Length = 219
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTISSVQAEDLAVYYCKQSYNLWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|3E8U|L Chain L, Crystal Structure And Thermodynamic Analysis Of Diagnostic
Fab 106.3 Complexed With Bnp 5-13 (C10a) Reveal Basis Of
Selective Molecular Recognition
Length = 216
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V ED+ TY C SN G E++ + P V + PP G A+
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|1F11|A Chain A, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
pdb|1F11|C Chain C, F124 Fab Fragment From A Monoclonal Anti-Pres2 Antibody
Length = 218
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V ED+ TY C SN G E++ + P V + PP G A+
Sbjct: 77 LNIHPVEEEDAATYYCQQSNEDPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3QHF|L Chain L, Crystal Structure Of Fab Del2d1, A Deletion Variant Of
Anti-Influenza Antibody 2d1
Length = 217
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN--------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEADYYCAAWDDSLNGFWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQAN 133
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 KATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 168
>pdb|1UZ6|E Chain E, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|L Chain L, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|M Chain M, Anti-Lewis X Fab Fragment Uncomplexed
pdb|1UZ6|V Chain V, Anti-Lewis X Fab Fragment Uncomplexed
Length = 218
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDVGVYYCAQNLEVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1Q9K|A Chain A, S25-2 Fab Unliganded 1
pdb|1Q9L|A Chain A, S25-2 Fab Unliganded 2
pdb|1Q9L|C Chain C, S25-2 Fab Unliganded 2
pdb|2R1W|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R1X|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R1Y|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R23|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2B|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2E|A Chain A, Crystal Structure Of S25-2 Fab In Complex With Kdo
Analogues
pdb|2R2H|A Chain A, Structure Of S25-2 In Complex With Ko
pdb|3BPC|A Chain A, Co-Crystal Structure Of S25-2 Fab In Complex With
5-Deoxy-4- Epi-2,3-Dehydro Kdo (4.8) Kdo
pdb|3SY0|A Chain A, S25-2- A(2-8)-A(2-4)kdo Trisaccharide Complex
pdb|3T4Y|A Chain A, S25-2- Kdo Monosaccharide Complex
pdb|3T65|A Chain A, S25-2- A(2-8)kdo Disaccharide Complex
pdb|3T77|A Chain A, S25-2- A(2-4)kdo Disaccharide Complex
pdb|4HGW|A Chain A, Crystal Structure Of S25-2 In Complex With A
5,6-dehydro-kdo Disaccharide
Length = 219
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 79 LTITSVQAEDLAVYYCKQSYNLRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VCFLNNFYPKDINVKWKIDGSE 159
>pdb|4F33|A Chain A, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|C Chain C, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|E Chain E, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F33|G Chain G, Crystal Structure Of Therapeutic Antibody Morab-009
pdb|4F3F|A Chain A, Crystal Structure Of Msln7-64 Morab-009 Fab Complex
Length = 213
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED TY C + G E++ V+ P V + PP G+A+
Sbjct: 72 LTISSVEAEDDATYYCQQWSKHPLTFGSGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 131 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 190
Query: 119 YQC 121
Y C
Sbjct: 191 YAC 193
>pdb|3LZF|L Chain L, Crystal Structure Of Fab 2d1 In Complex With The 1918
Influenza Virus Hemagglutinin
pdb|3QHZ|L Chain L, Crystal Structure Of Human Anti-Influenza Fab 2d1
pdb|3QHZ|M Chain M, Crystal Structure Of Human Anti-Influenza Fab 2d1
Length = 217
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 8/95 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN--------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEADYYCAAWDDSLNGFWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQAN 133
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 KATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 168
>pdb|4F8Q|A Chain A, Crystal Structure Of The Human Btn3a2 Ectodomain
Length = 219
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQ 75
L I VTA DSG Y C + A V L+V+ + V+V + DG + +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSNLHVEVKG-----YEDGGIHLE 139
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
C T + P + G IP V PV + G+Y+ A
Sbjct: 140 CRSTGWYPQPQIQWSNAKGENIPA-------VEAPVVADGVGLYEVAA 180
>pdb|1KEG|L Chain L, Antibody 64m-2 Fab Complexed With Dtt(6-4)tt
Length = 216
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y C ++ GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSLVPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1EHL|L Chain L, 64m-2 Antibody Fab Complexed With D(5ht)(6-4)t
Length = 217
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I V AED G Y C ++ GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSLVPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 136
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VCFLNNFYPKDINVKWKIDGSE 158
>pdb|1CBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
pdb|1NBV|L Chain L, An Autoantibody To Single-Stranded Dna: Comparison Of The
Three-Dimensional Structures Of The Unliganded Fab And A
Deoxynucleotide-Fab Complex
Length = 219
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y CS S G E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1UZ8|A Chain A, Anti-Lewis X Fab Fragment In Complex With Lewis X
pdb|1UZ8|L Chain L, Anti-Lewis X Fab Fragment In Complex With Lewis X
Length = 218
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDVGVYYCAQNLEVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3MLW|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
pdb|3MLW|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 1006-15d In Complex
With An Mn V3 Peptide
Length = 215
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSN---------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
LAI G+ +ED Y C+S + G V Q V + PP
Sbjct: 74 LAISGLRSEDEADYYCASWDDSRGGPDYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQA 133
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW DG +
Sbjct: 134 NKATLVCLISDFYPGAVTVAWKADGSPV 161
>pdb|3H0T|A Chain A, Hepcidin-Fab Complex
Length = 216
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCSS---SNI--GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ ED Y C S SN+ GG V Q V + PP A
Sbjct: 76 LTISGLKTEDEADYYCQSYDSSNVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKAT 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 136 LVCLISDFYPGAVTVAWKADSSPV 159
>pdb|1MOP|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1MOP|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis
pdb|1N2B|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate, Higher
Occupancy Of Pantoate And Lower Occupancy Of Ampcpp In
Subunit A
pdb|1N2B|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate, Higher
Occupancy Of Pantoate And Lower Occupancy Of Ampcpp In
Subunit A
pdb|1N2E|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2E|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp And Pantoate
pdb|1N2G|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2G|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Ampcpp
pdb|1N2H|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2H|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate
pdb|1N2I|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2I|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis In Complex With A Reaction Intermediate,
Pantoyl Adenylate, Different Occupancies Of Pantoyl
Adenylate
pdb|1N2J|A Chain A, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2J|B Chain B, Crystal Structure Of A Pantothenate Synthetase From M.
Tuberculosis In Complex With Pantoate
pdb|1N2O|A Chain A, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|1N2O|B Chain B, Crystal Structure Of Pantothenate Synthetase From M.
Tuberculosis, Low Occupancy Of Beta-Alanine At The
Pantoate Binding Sites
pdb|2A7X|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp
pdb|2A84|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Atp
pdb|2A86|A Chain A, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A86|B Chain B, Crystal Structure Of A Pantothenate Synthetase Complexed
With Amp And Beta-Alanine
pdb|2A88|A Chain A, Crystal Structure Of A Pantothenate Synthetase, Apo Enzyme
In C2 Space Group
pdb|3ISJ|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3ISJ|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(Methylsulfonyl)-1h-Indole- 2-Carboxamide
pdb|3LE8|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
pdb|3LE8|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.70 Angstrom Resolution In
Complex With 2-
(2-((Benzofuran-2-Carboxamido)methyl)-5-Methoxy-1h-
Indol-1- Yl)acetic Acid
Length = 300
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
+A + +++PG S+ +NP+ G R D D+AQ AE
Sbjct: 48 LALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 96
>pdb|3IUB|A Chain A, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUB|B Chain B, Crystal Structure Of Pantothenate Synthetase From
Mycobacterium Tuberculosis In Complex With
5-Methoxy-N-(5-
Methylpyridin-2-Ylsulfonyl)-1h-Indole-2-Carboxamide
pdb|3IUE|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IUE|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(5-
Methoxy-2-(5-Methylpyridin-2-Ylsulfonylcarbamoyl)-1h-
Indol-1-Yl) Acetic Acid
pdb|3IVC|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVC|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Ylmethoxy)carbonyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVG|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVG|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
((Benzofuran-2-Sulfonamido)methyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVX|A Chain A, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|3IVX|B Chain B, Crystal Structure Of Pantothenate Synthetase In Complex
With 2-(2-
(Benzofuran-2-Ylsulfonylcarbamoyl)-5-Methoxy-1h-Indol-1-
Yl)acetic Acid
pdb|4DDH|A Chain A, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDH|B Chain B, Pantothenate Synthetase In Complex With
6-methoxy-1-benzofuran-3-yl Acetic Acid
pdb|4DDK|A Chain A, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDK|B Chain B, Pantothenate Synthetase In Complex With
1,3-benzodioxole-5-carboxylic Acid
pdb|4DDM|A Chain A, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
pdb|4DDM|B Chain B, Pantothenate Synthetase In Complex With
2,1,3-benzothiadiazole-5- Carboxylic Acid
Length = 301
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
+A + +++PG S+ +NP+ G R D D+AQ AE
Sbjct: 48 LALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 96
>pdb|3COV|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COV|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.5 Ang Resolution- Apo Form
pdb|3COW|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COW|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution- In
Complex With Sulphonamide Inhibitor 2
pdb|3COY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COY|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.05 Ang Resolution- In
Complex With Sulphonamide Inhibitor 3
pdb|3COZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3COZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.0 Ang Resolution- In
Complex With Sulphonamide Inhibitor 4
pdb|3IMC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In Complex
With Fragment Compound 5- Methoxyindole, Sulfate And
Glycerol
pdb|3IMC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.6 Ang Resolution In Complex
With Fragment Compound 5- Methoxyindole, Sulfate And
Glycerol
pdb|3IME|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound 1-Benzofuran-2-Carboxylic
Acid
pdb|3IME|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.40 Ang Resolution In
Complex With Fragment Compound 1-Benzofuran-2-Carboxylic
Acid
pdb|3IMG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IMG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.8 Ang Resolution In A
Ternary Complex With Fragment Compounds 5-Methoxyindole
And 1-Benzofuran-2-Carboxylic Acid
pdb|3IOB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.80 Ang Resolution In
Complex With 5'-deoxy-5'- Thioadenosine
pdb|3IOC|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOC|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 2.50 Ang Resolution In
Complex With 5'-Deoxy-5'- (Benzyldisulfanyl)-Adenosine
pdb|3IOD|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOD|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.75 Ang Resolution In
Complex With 5'-Deoxy-5'-((3-
Nitrobenzyl)disulfanyl)-Adenosine
pdb|3IOE|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
pdb|3IOE|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Pantothenate Synthetase At 1.95 Ang Resolution In
Complex With 5'-Deoxy-5'-((R)-3,
4-Dihydroxybutylthio)-Adenosine
Length = 301
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
+A + +++PG S+ +NP+ G R D D+AQ AE
Sbjct: 49 LALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE 97
>pdb|1BLN|A Chain A, Anti-P-Glycoprotein Fab Mrk-16
pdb|1BLN|C Chain C, Anti-P-Glycoprotein Fab Mrk-16
Length = 214
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C ++ GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQASHAPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3M8O|L Chain L, Human Iga1 Fab Fragment
pdb|3QNX|A Chain A, Orthorhombic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|A Chain A, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNY|C Chain C, Monoclinic Form Of Human Iga1 Fab Fragment, Sharing Same
Fv As Igg
pdb|3QNZ|A Chain A, Orthorhombic Form Of Igg1 Fab Fragment (in Complex With
Antigenic Tubulin Peptide) Sharing Same Fv As Iga
pdb|3QO0|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (In Complex With
Antigenic Peptide) Sharing Same Fv As Iga
pdb|3QO1|A Chain A, Monoclinic Form Of Igg1 Fab Fragment (apo Form) Sharing
Same Fv As Iga
Length = 219
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+GTY C + G E++ V+ P V + PP G+A+
Sbjct: 78 LKIIRVEAEDAGTYYCMQNKQTPLTFGQGTRLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|3I2C|L Chain L, Crystal Structure Of Anti-Il-23 Antibody Cnto4088
Length = 218
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C S G E++ + P V + PP G A+
Sbjct: 77 LNIHPVEAEDAATYYCQHSGELPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3G6D|L Chain L, Crystal Structure Of The Complex Between Cnto607 Fab And
Il-13
pdb|3G6A|L Chain L, Crystal Structure Of Anti-Il-13 Antibody Cnto607
pdb|3G6A|A Chain A, Crystal Structure Of Anti-Il-13 Antibody Cnto607
Length = 213
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI------GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I G AED Y C + ++ GG V Q V + PP A
Sbjct: 72 LTISGTQAEDEADYYCGTWDMVTNNVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 131
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 132 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 164
>pdb|1PG7|W Chain W, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
pdb|1PG7|Y Chain Y, Murine 6a6 Fab In Complex With Humanized Anti-Tissue
Factor D3h44 Fab
Length = 210
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V++ PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVNLFPPSSEELKTKKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI--------PGRTS------STSLVINPVGREDRGIY 119
C IT + G + W DG + P + S S+ L + E Y
Sbjct: 135 LVCTITEFYPGAVRVDWKADGTPVTQGDETTQPSKQSNNKYMASSYLTLTAEAWESHSSY 194
Query: 120 QC 121
C
Sbjct: 195 SC 196
>pdb|4HF5|L Chain L, Crystal Structure Of Fab 8f8 In Complex A H2n2 Influenza
Virus Hemagglutinin
Length = 218
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSN---------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 74 LAISGLQSEDEADYYCAAWDDSLSGPAVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQA 133
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 NKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 169
>pdb|1CLO|L Chain L, Anti-Carcinoembryonic Antigen Monoclonal Antibody A5b7
Length = 213
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 72 LTISRVEAEDAATYYCQHWSSKPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|1ZA3|A Chain A, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
pdb|1ZA3|L Chain L, The Crystal Structure Of The Ysd1 Fab Bound To Dr5
Length = 213
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 20/122 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + ED TY C SS+ G E++ V+ P V + PP G+A+
Sbjct: 73 LTISSLQPEDFATYYCQSSSSPYTFGQGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTASV 131
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIY 119
C + + + W D G + S++L ++ E +Y
Sbjct: 132 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY 191
Query: 120 QC 121
C
Sbjct: 192 AC 193
>pdb|3BZ4|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3BZ4|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Decasaccharide
pdb|3C5S|A Chain A, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C5S|C Chain C, Crystal Structure Of Monoclonal Fab F22-4 Specific For
Shigella Flexneri 2a O-Ag
pdb|3C6S|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|E Chain E, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3C6S|G Chain G, Crystal Structure Of Fab F22-4 In Complex With A Shigella
Flexneri 2a O-Ag Pentadecasaccharide
pdb|3GGW|A Chain A, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
pdb|3GGW|C Chain C, Crystal Structure Of Fab F22-4 In Complex With A
Carbohydrate-Mimetic Peptide
Length = 219
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C+ + GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDVGIYYCAHNVELPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1EO8|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 210
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + AED+ TY C S GG E++ + P V + PP G A+
Sbjct: 72 LTISTMEAEDAATYYCHQRSSYPTFGGGTKLEIKRADAAP-TVSIFPPSKIQLTSGGASV 130
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VCFLNNFYPKDINVKWKIDGSE 152
>pdb|2YK1|L Chain L, Structure Of Human Anti-Nicotine Fab Fragment In Complex
With Nicotine
Length = 216
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG ++ Q V + PP
Sbjct: 74 LAISGLRSEDEADYYCAAWDDSLSAWVFGGGTQLDILGQPKAAPSVTLFPPSSEELQAPK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|3Q6G|L Chain L, Crystal Structure Of Fab Of Rhesus Mab 2.5b Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
pdb|3Q6G|M Chain M, Crystal Structure Of Fab Of Rhesus Mab 2.5b Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
Length = 209
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRC----SSSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I GV A D Y C SSS+ GG V Q V + PP
Sbjct: 71 LTISGVEAGDEADYYCQVWDSSSHHMLFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANK 130
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW DG +
Sbjct: 131 ATLVCLISDFYPGAVEVAWKADGSAV 156
>pdb|3LD8|B Chain B, Structure Of Jmjd6 And Fab Fragments
pdb|3LDB|B Chain B, Structure Of Jmjd6 Complexd With Alpha-Ketoglutarate And
Fab Fragment
Length = 220
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS--SN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C SN G E++ + P V + PP GSA
Sbjct: 79 LTITSVQAEDMGQYFCQQGISNPYTFGAGTKLEIKRADAKP-TVSIFPPSSEQLGTGSAT 137
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 LVCFVNNFYPKDINVKWKVDGSE 160
>pdb|2R6P|E Chain E, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus.
pdb|2R6P|G Chain G, Fit Of E Protein And Fab 1a1d-2 Into 24 Angstrom
Resolution Cryoem Map Of Fab Complexed With Dengue 2
Virus
Length = 206
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C +N+ GG E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQTNVDPWAFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKD 93
C + + + W D
Sbjct: 136 VVCFLNNFYPKDINVKWKID 155
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
L I +DSGTYR +N GEA+ L V+
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>pdb|1NAK|H Chain H, Igg1 Fab Fragment (83.1) Complex With 16-Residue Peptide
(Residues 304-321 Of Hiv-1 Gp120 (Mn Isolate))
pdb|1NAK|I Chain I, Igg1 Fab Fragment (83.1) Complex With 16-Residue Peptide
(Residues 304-321 Of Hiv-1 Gp120 (Mn Isolate))
Length = 214
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI---GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
L + VT ED+ TY C+ + G T V +TP V P + +
Sbjct: 80 LKLNSVTTEDTATYYCAIDDFDIWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLG 139
Query: 76 CEITPYDSGPYLIAW 90
C + Y P + W
Sbjct: 140 CLVKGYFPEPVTVTW 154
>pdb|3LQZ|B Chain B, Crystal Structure Of Hla-dp2
Length = 212
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 39 IGGEATAEVRLQVSTPYRVDVNP----PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDG 94
+GG T + R+Q RV+V+P PL +L C +T + G + WF +G
Sbjct: 106 LGGPMTLQRRVQP----RVNVSPSKKGPLQHHNL-----LVCHVTDFYPGSIQVRWFLNG 156
Query: 95 RQIPGRTSSTSLVIN 109
++ ST+L+ N
Sbjct: 157 QEETAGVVSTNLIRN 171
>pdb|1JGV|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
pdb|1JGU|L Chain L, Structural Basis For Disfavored Elimination Reaction In
Catalytic Antibody 1d4
Length = 220
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSS------NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L I V AED G Y CS S G E++ + P V + PP G A
Sbjct: 78 LKISRVEAEDLGVYFCSQSTHVPPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGA 136
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQ 96
+ C + + + W DG +
Sbjct: 137 SVVCFLNNFYPKDINVKWKIDGSE 160
>pdb|4ELK|B Chain B, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|D Chain D, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|F Chain F, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|H Chain H, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 244
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 13/91 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV----RLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I+ EDS Y C+SS G A RL V R +V PP +S+ A
Sbjct: 78 LKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLR-NVTPPKVSLFEPSKAEI 136
Query: 75 Q--------CEITPYDSGPYLIAWFKDGRQI 97
C T + ++W+ +G+++
Sbjct: 137 SHTQKATLVCLATGFYPDHVELSWWVNGKEV 167
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
+L I D+G Y C +S GEAT ++V + V V PP
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE-FGVPVQPP 106
>pdb|3U2S|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U2S|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Zm109
pdb|3U36|L Chain L, Crystal Structure Of Pg9 Fab
pdb|3U36|B Chain B, Crystal Structure Of Pg9 Fab
pdb|3U36|D Chain D, Crystal Structure Of Pg9 Fab
pdb|3U36|F Chain F, Crystal Structure Of Pg9 Fab
pdb|3U4E|L Chain L, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
pdb|3U4E|B Chain B, Crystal Structure Of Pg9 Fab In Complex With V1v2 Region
From Hiv-1 Strain Cap45
Length = 216
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRL-QVSTPYRVDVNPPLLSVHLDGSA 72
L I G+ AED G Y C S + G T L Q V + PP A
Sbjct: 75 LTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPV 159
>pdb|2W9D|L Chain L, Structure Of Fab Fragment Of The Icsm 18 - Anti-Prp
Therapeutic Antibody At 1.57 A Resolution
Length = 212
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS--SN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C SN GG E++ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|1YNH|A Chain A, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|B Chain B, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|C Chain C, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNH|D Chain D, Crystal Structure Of N-Succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 31 TYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAW 90
T+ + + G EA+ R QVS P R+ LL + A F + P P++
Sbjct: 26 THHYAGLSFGNEASTRHRFQVSNP-RLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVL 84
Query: 91 FKDGRQIPGRTSSTSLVINPVGRE 114
RQ+ G + S V+ V R+
Sbjct: 85 ----RQL-GFSGSDEQVLEKVARQ 103
>pdb|3MUH|L Chain L, Crystal Structure Of Pg9 Light Chain
Length = 216
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRL-QVSTPYRVDVNPPLLSVHLDGSA 72
L I G+ AED G Y C S + G T L Q V + PP A
Sbjct: 75 LTISGLQAEDEGDYYCKSLTSTRRRVFGTGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW D +
Sbjct: 135 TLVCLISDFYPGAVTVAWKADSSPV 159
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
L I V +D Y C + N GEAT L V T
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
>pdb|3S35|L Chain L, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 217
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C SN G E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQSNEDPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V +ED Y C SN G E++ + P V + PP G A+
Sbjct: 73 LSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|1V7M|L Chain L, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7M|M Chain M, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|L Chain L, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|M Chain M, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|N Chain N, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|1V7N|O Chain O, Human Thrombopoietin Functional Domain Complexed To
Neutralizing Antibody Tn1 Fab
pdb|2ZKH|L Chain L, Human Thrombopoietin Neutralizing Antibody Tn1 Fab
Length = 213
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 72 LTISRMEAEDAATYYCQQRSGYPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|1Q0X|L Chain L, Anti-Morphine Antibody 9b1 Unliganded Form
pdb|1Q0Y|L Chain L, Anti-Morphine Antibody 9b1 Complexed With Morphine
Length = 212
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ S+N GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|3TJE|L Chain L, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab E09
Length = 216
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI + +ED Y CS+ + GG V Q V + PP
Sbjct: 74 LAIRDLLSEDEADYYCSTWDDTLKGWVFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V +ED Y C SN G E++ + P V + PP G A+
Sbjct: 73 LSINSVESEDIANYYCQQSNRWPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|1YNI|A Chain A, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|B Chain B, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|C Chain C, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
pdb|1YNI|D Chain D, Crystal Structure Of N-succinylarginine Dihydrolase, Astb,
Bound To Substrate And Product, An Enzyme From The
Arginine Catabolic Pathway Of Escherichia Coli
Length = 458
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 31 TYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAW 90
T+ + + G EA+ R QVS P R+ LL + A F + P P++
Sbjct: 26 THHYAGLSFGNEASTRHRFQVSNP-RLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVL 84
Query: 91 FKDGRQIPGRTSSTSLVINPVGRE 114
RQ+ G + S V+ V R+
Sbjct: 85 ----RQL-GFSGSDEQVLEKVARQ 103
>pdb|1NJ9|L Chain L, Cocaine Hydrolytic Antibody 15a10
pdb|1NJ9|A Chain A, Cocaine Hydrolytic Antibody 15a10
Length = 212
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 18 ILAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
+L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 74 VLTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKA 133
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 134 TLVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
L I V +D Y C + N GEAT L V T
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 50/136 (36%), Gaps = 28/136 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPLLSVHLDGSAN 73
L +E V D G Y C N G L V P+R + P S + G
Sbjct: 70 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVE 129
Query: 74 FQCEITPYDSGPYLIAWFK-----------DG----RQIPGRTSSTS------LVINPVG 112
F C++ D+ P+ I W K DG + + +T+ L I V
Sbjct: 130 FVCKVYS-DAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 113 REDRGIYQCIARRSDG 128
ED G Y C+A S G
Sbjct: 188 FEDAGEYTCLAGNSIG 203
>pdb|3THM|L Chain L, Crystal Structure Of Fas Receptor Extracellular Domain In
Complex With Fab Ep6b_b01
Length = 216
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI + +ED Y CS+ + GG V Q V + PP
Sbjct: 74 LAIRDLLSEDEADYYCSTWDDTLEGWVFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR 56
IL+ T +++GTYRC+ +A + L V P R
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPAR 90
>pdb|1TZH|A Chain A, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
pdb|1TZH|L Chain L, Crystal Structure Of The Fab Yads1 Complexed With H-Vegf
Length = 213
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSS----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + ED TY C SS G E++ V+ P V + PP G+A+
Sbjct: 73 LTISSLQPEDFATYYCQSSASPATFGQGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTASV 131
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIY 119
C + + + W D G + S++L ++ E +Y
Sbjct: 132 VCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVY 191
Query: 120 QC 121
C
Sbjct: 192 AC 193
>pdb|4HPO|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch58 In
Complex With V2 Peptide
pdb|4HQQ|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch58
Length = 216
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ ED Y C S + GG V Q V + PP A
Sbjct: 76 LTISGLKTEDEADYYCQSYDNSSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKAT 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 136 LVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|4I9W|D Chain D, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|F Chain F, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 211
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C S G A E++ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYYCQQWSNSPPTFGAGAKLELKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|2FB4|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
pdb|2IG2|L Chain L, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 216
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 7/86 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-------GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ ++ G V Q V + PP
Sbjct: 74 LAIGGLQSEDETDYYCAAWDVSLNAYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 133
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQI 97
A C I+ + G +AW DG +
Sbjct: 134 ATLVCLISDFYPGAVTVAWKADGSPV 159
>pdb|1P2C|A Chain A, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|1P2C|D Chain D, Crystal Structure Analysis Of An Anti-Lysozyme Antibody
pdb|2Q76|A Chain A, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
pdb|2Q76|C Chain C, Mouse Anti-Hen Egg White Lysozyme Antibody F10.6.6 Fab
Fragment
Length = 212
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V ED G Y C S GG +++ + P V + PP G A+
Sbjct: 73 LSINSVETEDFGVYFCQQSGSWPRTFGGGTKLDIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V +ED Y C SN+ G E++ + P V + PP G A+
Sbjct: 73 LTINSVESEDIADYYCQQSNVWPFTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
L + +D+GTY C ++N GG + L V +
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
>pdb|1L7T|L Chain L, Crystal Structure Analysis Of The Anti-Testosterone Fab
Fragment
pdb|1VPO|L Chain L, Crystal Structure Analysis Of The Anti-testosterone Fab In
Complex With Testosterone
Length = 219
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFDGSTVPPKFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2GJZ|L Chain L, Structure Of Catalytic Elimination Antibody 13g5 From A
Crystal In Space Group P2(1)
pdb|2GJZ|A Chain A, Structure Of Catalytic Elimination Antibody 13g5 From A
Crystal In Space Group P2(1)
pdb|2GK0|L Chain L, Structure Of Catalytic Elimination Antibody 13g5 From A
Twinned Crystal In Space Group C2
pdb|2GK0|A Chain A, Structure Of Catalytic Elimination Antibody 13g5 From A
Twinned Crystal In Space Group C2
Length = 217
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKINRVEAEDLGVYYCFQGSHLPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|4DVB|B Chain B, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DVB|L Chain L, The Crystal Structure Of The Fab Fragment Of Pro-upa
Antibody Mab-112
pdb|4DW2|L Chain L, The Crystal Structure Of Upa In Complex With The Fab
Fragment Of Mab- 112
Length = 215
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V ED+ TY C + GG E++ + P V + PP G A+
Sbjct: 74 LTISSVETEDAATYYCQHYSAYPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|2G60|L Chain L, Structure Of Anti-Flag M2 Fab Domain
Length = 216
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGAHAPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1F3D|L Chain L, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten.
pdb|1F3D|J Chain J, Catalytic Antibody 4b2 In Complex With Its Amidinium
Hapten
Length = 219
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|4D9L|L Chain L, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|M Chain M, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|N Chain N, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
pdb|4D9L|O Chain O, Fab Structure Of Anti-Hiv-1 Gp120 V2 Mab 697
Length = 215
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ AED Y C S + G V Q V + PP
Sbjct: 75 LAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 134
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 135 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 168
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
RTR+ G + ++ DSG Y C +S+ G T + VS
Sbjct: 48 RTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>pdb|1KEM|L Chain L, Catalytic Antibody 28b4 Fab Fragment
pdb|1KEL|L Chain L, Catalytic Antibody 28b4 Fab Fragment Complexed With Hapten
(1-[n-4'-Nitrobenzyl-N-4'-Carboxybutylamino]
Methylphosphonic Acid)
Length = 217
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1KCU|L Chain L, Crystal Structure Of Antibody Pc287
pdb|1KC5|L Chain L, Crystal Structure Of Antibody Pc287 In Complex With Ps1
Peptide
Length = 214
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED Y C S GG E++ + P V + PP G A+
Sbjct: 73 LTISSVQAEDLADYHCGQSYSYPLTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 132 VVCFLNNFYPKDINVKWKIDGSE 154
>pdb|1IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|1IGF|M Chain M, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
pdb|2IGF|L Chain L, Crystal Structures Of An Antibody To A Peptide And Its
Complex With Peptide Antigen At 2.8 Angstroms
Length = 219
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1I9I|L Chain L, Native Crystal Structure Of The Recombinant Monoclonal
Wild Type Anti-Testosterone Fab Fragment
pdb|1I9J|L Chain L, Testosterone Complex Structure Of The Recombinant
Monoclonal Wild Type Anti-Testosterone Fab Fragment
Length = 219
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|2DQT|L Chain L, High Resolution Crystal Structure Of The Complex Of The
Hydrolytic Antibody Fab 6d9 And A Transition-State
Analog
pdb|2DQU|L Chain L, Crystal Form Ii: High Resolution Crystal Structure Of The
Complex Of The Hydrolytic Antibody Fab 6d9 And A
Transition-State Analog
pdb|2DTM|L Chain L, Thermodynamic And Structural Analyses Of Hydrolytic
Mechanism By Catalytic Antibodies
Length = 219
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 50/136 (36%), Gaps = 28/136 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPLLSVHLDGSAN 73
L E V D G Y C N G L V +P+R + P S + G
Sbjct: 70 LIXESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVE 129
Query: 74 FQCEITPYDSGPYLIAWFK-----------DG----RQIPGRTSSTS------LVINPVG 112
F C++ D+ P+ I W K DG + + +T+ L I V
Sbjct: 130 FVCKVYS-DAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 187
Query: 113 REDRGIYQCIARRSDG 128
ED G Y C+A S G
Sbjct: 188 FEDAGEYTCLAGNSIG 203
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 214
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED Y C S G E++ V+ P V + PP G+A+
Sbjct: 73 LTISSVQAEDLADYHCGQSYNYPFTFGSGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 132 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 191
Query: 119 YQC 121
Y C
Sbjct: 192 YAC 194
>pdb|2PCP|A Chain A, Antibody Fab Complexed With Phencyclidine
pdb|2PCP|C Chain C, Antibody Fab Complexed With Phencyclidine
Length = 216
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGTHAPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V A+D TY C SN G +++ + P V + PP G A+
Sbjct: 77 LTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|3LEX|L Chain L, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 11f10 In Complex With Hiv-1 Gp41
pdb|3LEX|B Chain B, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 11f10 In Complex With Hiv-1 Gp41
Length = 219
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCWQGTHFPWTFGGYTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1NCW|L Chain L, Cationic Cyclization Antibody 4c6 In Complex With Benzoic
Acid
pdb|1ND0|A Chain A, Cationic Cyclization Antibody 4c6 Complex With Transition
State Analog
pdb|1ND0|C Chain C, Cationic Cyclization Antibody 4c6 Complex With Transition
State Analog
pdb|1ND0|E Chain E, Cationic Cyclization Antibody 4c6 Complex With Transition
State Analog
pdb|1ND0|G Chain G, Cationic Cyclization Antibody 4c6 Complex With Transition
State Analog
pdb|1RUK|L Chain L, Crystal Structure (C) Of Native Cationic Cyclization
Antibody 4c6 Fab At Ph 4.6 With A Data Set Collected At
Ssrl Beamline 9-1
pdb|1RUP|L Chain L, Crystal Structure (g) Of Native Cationic Cyclization
Antibody 4c6 Fab At Ph 8.5 With A Data Set Collected At
Aps Beamline 19-id
Length = 219
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCWQGTHFPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3U9U|B Chain B, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
pdb|3U9U|D Chain D, Crystal Structure Of Extracellular Domain Of Human
Erbb4HER4 IN Complex With The Fab Fragment Of Mab1479
Length = 219
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPWTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3SGD|L Chain L, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGD|I Chain I, Crystal Structure Of The Mouse Mab 17.2
pdb|3SGE|L Chain L, Crystal Structure Of Mab 17.2 In Complex With R13 Peptide
pdb|3SGE|I Chain I, Crystal Structure Of Mab 17.2 In Complex With R13 Peptide
Length = 219
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCWQGSHFPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1ORS|A Chain A, X-Ray Structure Of The Kvap Potassium Channel Voltage
Sensor In Complex With An Fab
Length = 214
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 19 LAIEGVTAEDSGTYRCS----SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + AED+ TY C S G E++ + P V + PP G A+
Sbjct: 74 LTISSMEAEDAATYYCHQFHRSLTFGSGTKLEIKRADAAP-TVSIFPPSSEQLTSGGASV 132
Query: 75 QCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VCFLNNFYPKDINVKWKIDGSE 154
>pdb|1RU9|L Chain L, Crystal Structure (A) Of U.V.-Irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 4.6 With A Data Set
Collected In-House.
pdb|1RUA|L Chain L, Crystal Structure (b) Of U.v.-irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 4.6 With A Data Set
Collected At Ssrl Beamline 11-1.
pdb|1RUL|L Chain L, Crystal Structure (d) Of U.v.-irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 5.6 With A Data Set
Collected At Ssrl Beamline 11-1.
pdb|1RUM|L Chain L, Crystal Structure (F) Of H2o2-Soaked Cationic Cyclization
Antibody 4c6 Fab At Ph 8.5 With A Data Set Collected At
Ssrl Beamline 9-1
Length = 219
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCWQGTHFPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C +++ G E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDVGVYYCFQASLVPLTFGQGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|1EJO|L Chain L, Fab Fragment Of Neutralising Monoclonal Antibody 4c4
Complexed With G-H Loop From Fmdv
Length = 216
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V A+D TY C SN G E++ + P V + PP G A+
Sbjct: 77 LTINPVEADDVATYYCQQSNEDPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVRWKIDGSE 158
>pdb|3UTZ|A Chain A, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|D Chain D, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
pdb|3UTZ|E Chain E, Endogenous-Like Inhibitory Antibodies Targeting Activated
Metalloproteinase Motifs Show Therapeutic Potential
Length = 219
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C ++ G E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDLGVYYCFQASHVPPTFGSGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|2GSI|A Chain A, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|C Chain C, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|E Chain E, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|G Chain G, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
Length = 215
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V ED+ TY CS + GG E++ + P V + PP G A+
Sbjct: 77 LNIHPVEEEDAATYYCSHIRELPRSSGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 136 VVCFLNNFYPKDINVKWKIDGSE 158
>pdb|1MCO|L Chain L, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 216
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 6/85 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ AED Y CSS G V Q V + PP A
Sbjct: 75 LTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKA 134
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 135 TEVCLISDFYPGAVTVAWKADGSPV 159
>pdb|3BKY|L Chain L, Crystal Structure Of Chimeric Antibody C2h7 Fab In Complex
With A Cd20 Peptide
Length = 213
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C + G E++ V+ P V + PP G+A+
Sbjct: 72 LTISRVEAEDAATYYCQQWSFNPPTFGAGTKLELKRTVAAP-SVFIFPPSDEQLKSGTAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 131 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 190
Query: 119 YQC 121
Y C
Sbjct: 191 YAC 193
>pdb|4HPY|L Chain L, Crystal Structure Of Rv144-elicited Antibody Ch59 In
Complex With V2 Peptide
Length = 215
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G ED Y C S++ GG V Q V + PP
Sbjct: 73 LTISGAQVEDEADYYCYSTDSSGNHRVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 132
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 133 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 166
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain In Complex
With Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor Ancestral Variable Domain
Length = 121
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAE 46
L I +T EDSGTYRC + G AE
Sbjct: 68 LRINDLTVEDSGTYRCKPESRYGSYDAE 95
>pdb|2W9E|L Chain L, Structure Of Icsm 18 (Anti-Prp Therapeutic Antibody) Fab
Fragment Complexed With Human Prp Fragment 119-231
Length = 212
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS--SN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C SN GG E++ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYFCHQWRSNPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTGGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|2UYL|A Chain A, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|M Chain M, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|V Chain V, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
pdb|2UYL|X Chain X, Crystal Structure Of A Monoclonal Antibody Directed
Against An Antigenic Determinant Common To Ogawa And
Inaba Serotypes Of Vibrio Cholerae O1
Length = 219
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + GG E++ + P V + PP G A+
Sbjct: 78 LEISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1A5F|L Chain L, Fab Fragment Of A Monoclonal Anti-E-Selectin Antibody
Length = 220
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I GV AED Y C ++ G E++ + P V + PP G A+
Sbjct: 79 LSISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 137
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VVCFLNNFYPKDINVKWKIDGSE 160
>pdb|2ICC|A Chain A, Extracellular Domain Of Crig
pdb|2ICE|S Chain S, Crig Bound To C3c
pdb|2ICE|T Chain T, Crig Bound To C3c
pdb|2ICF|S Chain S, Crig Bound To C3b
Length = 119
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 33 RCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT 79
R SS + +A + RL VS DV+ L ++ +D +++ CE+T
Sbjct: 52 RDSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVT 98
>pdb|1NLD|L Chain L, Fab Fragment Of A Neutralizing Antibody Directed Against
An Epitope Of Gp41 From Hiv-1
Length = 219
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ + P V + PP G A+
Sbjct: 78 LKISRVEAEDLGVYYCWQGTHFPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3KS0|L Chain L, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
pdb|3KS0|J Chain J, Crystal Structure Of The Heme Domain Of Flavocytochrome B2
In Complex With Fab B2b4
Length = 214
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWDSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|1BBD|L Chain L, Three Dimensional Structure Of The Fab Fragment Of A
Neutralizing Antibody To Human Rhinovirus Serotype 2
pdb|1A3R|L Chain L, Fab Fragment (Antibody 8f5) Complexed With Peptide From
Human Rhinovirus (Serotype 2) Viral Capsid Protein Vp2
(Residues 156-170)
Length = 220
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I GV AED Y C ++ G E++ + P V + PP G A+
Sbjct: 79 LSISGVQAEDLAVYYCQNNYNYPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 137
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 138 VVCFLNNFYPKDINVKWKIDGSE 160
>pdb|2VXS|L Chain L, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
pdb|2VXS|M Chain M, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
pdb|2VXS|N Chain N, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
pdb|2VXS|O Chain O, Structure Of Il-17a In Complex With A Potent, Fully Human
Neutralising Antibody
Length = 216
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ ED Y C + + GG V Q V + PP A
Sbjct: 76 LTISGLKTEDEADYYCQTYDPYSVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKAT 135
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 136 LVCLISDFYPGAVTVAWKADSSPVKAGVETTT 167
>pdb|4F8T|A Chain A, Crystal Structure Of The Human Btn3a3 Ectodomain
Length = 226
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYRVDVNPPLLSVHLDGSANFQ 75
L I VTA DSG Y C + A V L+V+ + ++V + DG + +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHIEVKG-----YEDGGIHLE 139
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
C T + P + G IP V PV + G+Y A
Sbjct: 140 CRSTGWYPQPQIKWSDTKGENIPA-------VEAPVVADGVGLYAVAA 180
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFK 92
+ LDG+++F IT G Y +AW K
Sbjct: 246 LELDGASHFAPNITNKTIGMYSVAWLK 272
>pdb|4FQ2|L Chain L, Crystal Structure Of 10-1074 Fab
Length = 214
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 8/95 (8%)
Query: 19 LAIEGVTAEDSGTYRCS--------SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
L I GV A D Y C S + GG V Q V + PP
Sbjct: 71 LTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQAN 130
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 131 KATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 165
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
VT + GTY C + + GE T EV + V +P
Sbjct: 420 VTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
>pdb|3HAE|L Chain L, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|G Chain G, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|N Chain N, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3HAE|S Chain S, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
Length = 212
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ AED Y C S G V Q V + PP A
Sbjct: 75 LTISGLQAEDEAHYYCWSFAGSYYVFGTGTDVTVLGQPKANPTVTLFPPSSEELQANKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 135 LVCLISDFYPGAVTVAWKADGSPV 158
>pdb|3UJJ|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 4025 In Complex
With Con A Peptide
Length = 213
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGE-------ATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I G +D Y C S+N GG V Q V + PP
Sbjct: 72 LTISGAQVDDEADYYCYSTNSGGTFFVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D + +T+
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 165
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
VT + GTY C + + GE T EV + V +P
Sbjct: 236 VTRDLEGTYLCRARSTQGEVTREVTVNVLSP 266
>pdb|2Q87|A Chain A, The Crystal Structure Of The Human Irp60 Ectodomain
pdb|2Q87|B Chain B, The Crystal Structure Of The Human Irp60 Ectodomain
pdb|2Q87|C Chain C, The Crystal Structure Of The Human Irp60 Ectodomain
Length = 110
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 15/54 (27%)
Query: 15 LGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
L + +E +T ED+GTY C V TP+ D + P++ V +
Sbjct: 66 LSFTVTLENLTEEDAGTYWCG---------------VDTPWLQDFHDPVVEVEV 104
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
VT + GTY C + + GE T EV + V +P
Sbjct: 235 VTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L+I V +ED Y C +N G E++ V+ P V + PP G+A+
Sbjct: 73 LSINSVESEDIADYYCQQNNNWPTTFGAGTKLELKRTVAAP-SVFIFPPSDEQLKSGTAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 132 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 191
Query: 119 YQC 121
Y C
Sbjct: 192 YAC 194
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
++I+ + ED+GTY C +SN
Sbjct: 92 ISIDTLVEEDTGTYECRASN 111
>pdb|3P30|L Chain L, Crystal Structure Of The Cluster Ii Fab 1281 In Complex
With Hiv-1 Gp41 Ectodomain
Length = 213
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN--------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
LAI G+ +ED Y C++ + G V Q V + PP
Sbjct: 74 LAISGLRSEDEADYYCAAWDDSLSGPYVFGAGTKLTVLGQPKAAPSVTLFPPSSEELQAN 133
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
A C I+ + G +AW D I +T+
Sbjct: 134 KATLVCLISDFYPGAVTVAWKADSSPIKAGVETTT 168
>pdb|3GJE|L Chain L, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJE|A Chain A, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJF|L Chain L, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
pdb|3GJF|K Chain K, Rational Development Of High-Affinity T-Cell Receptor-Like
Antibodies
Length = 212
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G+ AED Y C S G V Q V + PP A
Sbjct: 75 LTISGLQAEDEADYYCWSFAGSYYVFGTGTDVTVLGQPKANPTVTLFPPSSEELQANKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C I+ + G +AW DG +
Sbjct: 135 LVCLISDFYPGAVTVAWKADGSPV 158
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPL 63
G + R + ++ V D G Y C N G +L V +P+R + P
Sbjct: 65 GYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN 124
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFK----DGRQI-------------PGRTSSTS- 105
+V L + F C++ D P+ I W K +G +I G ++
Sbjct: 125 KTVALGSNVEFMCKVYS-DPQPH-IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 182
Query: 106 ---LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
L + V ED G Y C+A S G ++ SA L +
Sbjct: 183 MEVLHLRNVSFEDAGEYTCLAGNSIG-LSHHSAWLTV 218
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
++I+ + ED+GTY C +SN
Sbjct: 92 ISIDTLVEEDTGTYECRASN 111
>pdb|4FFV|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|L Chain L, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
Length = 210
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS-SN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C SN GG E+ + P V + PP G A+
Sbjct: 72 LTISRVEAEDAATYFCQQWSNHPPTFGGGTKLEIDRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+++++ ++E SGTY C+ N G +RL V P
Sbjct: 57 VISVKNASSEYSGTYSCTVRNRVGSDQCLLRLNVVPP 93
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
RTR+ G + + DSG Y C +S+ G T + VS
Sbjct: 54 RTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
>pdb|1WC7|A Chain A, Fab Fragment Of Plp-Dependent Catalytic Antibody 15a9 In
Complex With Phosphopyridoxyl-L-Alanine
pdb|1WC7|L Chain L, Fab Fragment Of Plp-Dependent Catalytic Antibody 15a9 In
Complex With Phosphopyridoxyl-L-Alanine
pdb|1WCB|A Chain A, Plp-Dependent Catalytic Antibody 15a9 In Complex With Its
Hapten
pdb|1WCB|L Chain L, Plp-Dependent Catalytic Antibody 15a9 In Complex With Its
Hapten
pdb|2BMK|A Chain A, Fab Fragment Of Plp-Dependent Catalytic Antibody 15a9 In
Complex With Phosphopyridoxyl-D-Alanine
pdb|2BMK|L Chain L, Fab Fragment Of Plp-Dependent Catalytic Antibody 15a9 In
Complex With Phosphopyridoxyl-D-Alanine
Length = 213
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 72 LTISRMEAEDAATYYCQQRSTYPFTFGGGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 213
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED Y C N GG E++ + P V + PP G A+
Sbjct: 73 LTISSVQAEDLADYHCGQGNSYPYTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 131
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPG 99
C + + + W D + G
Sbjct: 132 VVCFLNNFYPKDINVKWKIDSERQNG 157
>pdb|1F90|L Chain L, Fab Fragment Of Monoclonal Antibody (Lnkb-2) Against Human
Interleukin-2 In Complex With Antigenic Peptide
pdb|1F8T|L Chain L, Fab (Lnkb-2) Of Monoclonal Antibody, Crystal Structure
pdb|1S5I|L Chain L, Fab (Lnkb-2) Of Monoclonal Antibody To Human
Interleukin-2, Crystal Structure
Length = 219
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSS-----NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C GG E++ + P V + PP G A+
Sbjct: 78 LRISRVEAEDLGVYYCVQGTHFPRTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPL 63
G + R + ++ V D G Y C N G +L V +P+R + P
Sbjct: 66 GYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN 125
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFK----DGRQI-------------PGRTSSTS- 105
+V L + F C++ D P+ I W K +G +I G ++
Sbjct: 126 KTVALGSNVEFMCKVYS-DPQPH-IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 183
Query: 106 ---LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
L + V ED G Y C+A S G ++ SA L +
Sbjct: 184 MEVLHLRNVSFEDAGEYTCLAGNSIG-LSHHSAWLTV 219
>pdb|1FIG|L Chain L, Routes To Catalysis: Structure Of A Catalytic Antibody And
Comparison With Its Natural Counterpart
Length = 215
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C + G E++ + P V + PP G A+
Sbjct: 74 LTISSVEAEDAATYYCQQYSGYPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 132
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 133 VVCFLNNFYPKDINVKWKIDGSE 155
>pdb|3HR5|L Chain L, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|A Chain A, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|P Chain P, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|Q Chain Q, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
Length = 219
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + ED TY CS + + G E++ V+ P V + PP G+A+
Sbjct: 78 LTISSLQPEDFATYYCSQNTLVPWTFGQGTKVEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQLGGTRN 144
R D G+Y C+AR G+ A L++ R+
Sbjct: 81 RPDEGVYVCVARNYLGEAVSHDASLEVAILRD 112
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSN 38
G + L I+GVT D G Y C++S+
Sbjct: 66 GSEMKKFLSTLTIDGVTRSDQGLYTCAASS 95
>pdb|3NCY|W Chain W, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
pdb|3NCY|S Chain S, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter
(Adic) In Complex With A Fab Fragment
Length = 211
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + AED+ TY C + GG E++ + P V + PP G A+
Sbjct: 72 LTISSMEAEDAATYYCQQWSYNPPTFGGGTKLEIKRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFK-DGRQ 96
C + + + W K DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKKIDGSE 154
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVN---PPL 63
G + R + ++ V D G Y C N G +L V +P+R + P
Sbjct: 65 GYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPAN 124
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFK----DGRQI-------------PGRTSSTS- 105
+V L + F C++ D P+ I W K +G +I G ++
Sbjct: 125 KTVALGSNVEFMCKVYS-DPQPH-IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKE 182
Query: 106 ---LVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
L + V ED G Y C+A S G ++ SA L +
Sbjct: 183 MEVLHLRNVSFEDAGEYTCLAGNSIG-LSHHSAWLTV 218
>pdb|4FFW|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|L Chain L, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 210
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS-SN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED+ TY C SN GG E+ + P V + PP G A+
Sbjct: 72 LTISRVEAEDAATYFCQQWSNHPPTFGGGTKLEIDRADAAP-TVSIFPPSSEQLTSGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 131 VVCFLNNFYPKDINVKWKIDGSE 153
>pdb|2D03|L Chain L, Crystal Structure Of The G91s Mutant Of The Nna7 Fab
Length = 217
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C S+ G E++ + P V + PP G A+
Sbjct: 78 LTISRVEAEDLGVYYCFQSSHVPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1I3V|A Chain A, Three-Dimensional Structure Of A Lama Vhh Domain
Unliganded
pdb|1I3V|B Chain B, Three-Dimensional Structure Of A Lama Vhh Domain
Unliganded
Length = 129
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
V S CE + G Y+I WF RQ PG+
Sbjct: 12 VQAGDSLKLSCEASGDSIGTYVIGWF---RQAPGK 43
>pdb|2ZG2|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Native
Siglec-5
Length = 216
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 81 YDSGPYLIAWFKDGRQIP--GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
Y S P + WF+DG +IP +T+ V E +G ++ + GDV + + L
Sbjct: 33 YSSPPLYVYWFRDG-EIPYYAEVVATNNPDRRVKPETQGRFRLL-----GDVQKKNCSLS 86
Query: 139 LGGTR 143
+G R
Sbjct: 87 IGDAR 91
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 26.2 bits (56), Expect = 8.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
++P GP W R +P + SL + VG +D GI++C A +G
Sbjct: 414 LSPQGGGP----WDSVARVLP----NGSLFLPAVGIQDEGIFRCQAMNRNG 456
>pdb|2ZG1|A Chain A, Crystal Structure Of Two N-Terminal Domains Of Siglec-5 In
Complex With 6'-Sialyllactose
pdb|2ZG3|A Chain A, Crystal Structure Of Two N-terminal Domains Of Native
Siglec-5 In Complex With 3'-sialyllactose
Length = 214
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 81 YDSGPYLIAWFKDGRQIP--GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
Y S P + WF+DG +IP +T+ V E +G ++ + GDV + + L
Sbjct: 32 YSSPPLYVYWFRDG-EIPYYAEVVATNNPDRRVKPETQGRFRLL-----GDVQKKNCSLS 85
Query: 139 LGGTR 143
+G R
Sbjct: 86 IGDAR 90
>pdb|1CR9|L Chain L, Crystal Structure Of The Anti-Prion Fab 3f4
pdb|1CU4|L Chain L, Crystal Structure Of The Anti-Prion Fab 3f4 In Complex
With Its Peptide Epitope
Length = 219
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 19 LAIEGVTAEDSGTYRCSS-----SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C +GG E+ + P V + PP G A+
Sbjct: 78 LKISRVEAEDVGVYYCWQGTHFPHTVGGGTKLEIARADAAP-TVSIFPPSSEQLTSGGAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQ 96
C + + + W DG +
Sbjct: 137 VVCFLNNFYPKDINVKWKIDGSE 159
>pdb|1F3J|B Chain B, Histocompatibility Antigen I-Ag7
pdb|1F3J|E Chain E, Histocompatibility Antigen I-Ag7
Length = 187
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 105 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 146
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I +DSG + C ++N G A L+V
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>pdb|4DFI|A Chain A, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
MUTANT FAMP
Length = 128
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
LA+ G+T ED G Y C S
Sbjct: 95 LALHGLTVEDEGNYTCEFST 114
>pdb|2X1X|R Chain R, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|L Chain L, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|M Chain M, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|N Chain N, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|O Chain O, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 213
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSN 38
G + L I+GVT D G Y C++S+
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192
>pdb|1IAO|B Chain B, Class Ii Mhc I-Ad In Complex With Ovalbumin Peptide
323-339
Length = 222
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 135 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 176
>pdb|2Y06|L Chain L, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl) -Acetyl Murine Germline Antibody Bbe6.12h3
Fab Fragment In Complex With A Phage Display Derived
Dodecapeptide Gdprpsyishll
pdb|2Y36|L Chain L, Crystal Structure Analysis Of The Anti-(4-Hydroxy-3-
Nitrophenyl)- Acetyl Murine Germline Antibody Bbe6.12h3
Fab Fragment In Complex With A Phage Display Derived
Dodecapeptide Dlwttaiptips
Length = 211
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP +A
Sbjct: 75 LTITGGQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELATNTAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI--------PGRTS------STSLVINPVGREDRGIY 119
C IT + G + W DG + P + S S+ L + E Y
Sbjct: 135 LVCTITDFYPGVVTVDWTVDGTPVTQGMETTQPSKQSNNKYMASSYLTLTAAAWERHSSY 194
Query: 120 QC 121
C
Sbjct: 195 SC 196
>pdb|3RDT|D Chain D, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 217
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 136 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 177
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 24/126 (19%)
Query: 19 LAIEGVTAEDSGTYRC--------SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
L I GV ED+ TY C + GG E+ V+ P V + PP G
Sbjct: 73 LTISGVQREDAATYYCLGGYPAASYRTAFGGGTELEIIRTVAAP-SVFIFPPSDEQLKSG 131
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGRED 115
+A+ C + + + W D G + S++L ++ E
Sbjct: 132 TASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEK 191
Query: 116 RGIYQC 121
+Y C
Sbjct: 192 HKVYAC 197
>pdb|1ES0|B Chain B, Crystal Structure Of The Murine Class Ii Allele I-A(G7)
Complexed With The Glutamic Acid Decarboxylase (Gad65)
Peptide 207-220
Length = 221
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 134 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 175
>pdb|1I3U|A Chain A, Three-Dimensional Structure Of A Llama Vhh Domain
Complexed With The Dye Rr1
Length = 127
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
V S CE + G Y+I WF RQ PG+
Sbjct: 12 VQAGDSLKLSCEASGDSIGTYVIGWF---RQAPGK 43
>pdb|4AMK|L Chain L, Fab Fragment Of Antiporphrin Antibody 13g10
Length = 212
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL----- 63
G + L I+GVT D G Y C++S+ G T + ST RV P +
Sbjct: 152 GSEMKKFLSTLTIDGVTRSDQGLYTCAASS--GLMTK----KNSTFVRVHEKPFVAFGSG 205
Query: 64 LSVHLDGSANFQCEITPYDSG--PYLIAWFKDGRQIPGRTSST-----SLVINPVGREDR 116
+ ++ + + I G P I W+K+G IP ++ T L I V D
Sbjct: 206 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNG--IPLESNHTIKAGHVLTIMEVSERDT 263
Query: 117 GIYQCI 122
G Y I
Sbjct: 264 GNYTVI 269
>pdb|1LNU|B Chain B, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|D Chain D, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|F Chain F, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|1LNU|H Chain H, Crystal Structure Of Class Ii Mhc Molecule Iab Bound To
Ealpha3k Peptide
pdb|3C5Z|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C60|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C6L|D Chain D, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|H Chain H, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 217
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 136 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 177
>pdb|1CLY|L Chain L, Igg Fab (Human Igg1, Kappa) Chimeric Fragment (Cbr96)
Complexed With Lewis Y Nonoate Methyl Ester
pdb|1UCB|L Chain L, Structure Of Uncomplexed Fab Compared To Complex (1cly,
1clz)
Length = 219
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + G E++ V+ P V + PP G+A+
Sbjct: 78 LKISRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAP-SVFIFPPSDEQLKSGTAS 136
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGI 118
C + + + W D G + S++L ++ E +
Sbjct: 137 VVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV 196
Query: 119 YQC 121
Y C
Sbjct: 197 YAC 199
>pdb|3RHW|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|K Chain K, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|L Chain L, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|M Chain M, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|N Chain N, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|O Chain O, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 210
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|3MBE|B Chain B, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|F Chain F, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 201
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 114 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 155
>pdb|2ZPK|L Chain L, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
pdb|2ZPK|M Chain M, Crystal Structure Of P20.1 Fab Fragment In Complex With
Its Antigen Peptide
Length = 212
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|1YUH|L Chain L, Fab Fragment
pdb|1YUH|A Chain A, Fab Fragment
Length = 211
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 74 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 133
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 134 LVCTITDFYPGVVTVDWKVDGTPV 157
>pdb|3CUP|B Chain B, Crystal Structure Of The Mhc Class Ii Molecule I-Ag7 In
Complex With The Peptide Gad221-235
Length = 222
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 135 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 176
>pdb|4AT6|B Chain B, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|D Chain D, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|F Chain F, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|I Chain I, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|K Chain K, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|L Chain L, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|N Chain N, Fab Fragment Of Antiporphyrin Antibody 14h7
pdb|4AT6|P Chain P, Fab Fragment Of Antiporphyrin Antibody 14h7
Length = 212
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHLVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|1MUJ|B Chain B, Crystal Structure Of Murine Class Ii Mhc I-Ab In Complex
With A Human Clip Peptide
Length = 197
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 110 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 151
>pdb|3CFD|H Chain H, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFD|B Chain B, Purple-fluorescent Antibody Ep2-25c10 In Complex With Its
Stilbene Hapten
pdb|3CFE|H Chain H, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
pdb|3CFE|B Chain B, Crystal Structure Of Purple-Fluorescent Antibody Ep2-25c10
Length = 220
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIG 40
L + VT ED+ TY C+ S+ G
Sbjct: 80 FLQLNSVTTEDTATYYCARSDYG 102
>pdb|2IAD|B Chain B, Class Ii Mhc I-ad In Complex With An Influenza
Hemagglutinin Peptide 126-138
Length = 205
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 124 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 165
>pdb|2P24|B Chain B, I-AuMBP125-135
Length = 259
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 109
L+ C +T + + WF++G++ SST L+ N
Sbjct: 160 LNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRN 201
>pdb|1GIG|L Chain L, Refined Three-Dimensional Structure Of The Fab Fragment Of
A Murine Igg1, Lambda Antibody
pdb|2VIR|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|2VIS|A Chain A, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
pdb|2VIT|A Chain A, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 210
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
>pdb|4A6Y|L Chain L, Crystal Structure Of Fab Fragment Of Anti-(4-Hydroxy-3-
Nitrophenyl)-Acetyl Murine Germline Antibody Bbe6.12h3
Length = 211
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 19 LAIEGVTAEDSGTYRCS--SSN---IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ SN GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTLFPPSSEELETNKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQI 97
C IT + G + W DG +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPV 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,790,620
Number of Sequences: 62578
Number of extensions: 187269
Number of successful extensions: 1808
Number of sequences better than 100.0: 572
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 760
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)