Query psy11131
Match_columns 150
No_of_seqs 135 out of 1322
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 18:48:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 3.4E-21 7.3E-26 139.8 15.0 135 9-147 378-521 (1051)
2 KOG3513|consensus 99.9 7.4E-21 1.6E-25 138.1 15.3 125 17-145 294-426 (1051)
3 KOG4194|consensus 99.8 1.4E-18 3E-23 120.0 11.7 125 17-145 574-709 (873)
4 PHA02826 IL-1 receptor-like pr 99.8 3E-17 6.5E-22 103.9 13.5 106 16-127 97-211 (227)
5 KOG4194|consensus 99.7 2E-16 4.4E-21 109.6 12.2 122 17-141 669-797 (873)
6 PHA02785 IL-beta-binding prote 99.7 1.4E-15 3E-20 101.6 15.8 119 10-128 169-316 (326)
7 KOG4221|consensus 99.7 4.3E-16 9.3E-21 114.3 14.3 138 5-146 180-332 (1381)
8 cd05762 Ig8_MLCK Eighth immuno 99.7 6.7E-16 1.5E-20 85.9 11.0 87 56-146 2-97 (98)
9 KOG4222|consensus 99.7 8.2E-17 1.8E-21 117.3 8.6 129 12-144 182-317 (1281)
10 cd05771 IgC_Tapasin_R Tapasin- 99.7 6.4E-15 1.4E-19 87.2 13.7 109 17-128 1-132 (139)
11 cd05851 Ig3_Contactin-1 Third 99.7 5E-15 1.1E-19 80.9 11.0 82 55-140 2-88 (88)
12 KOG4221|consensus 99.6 9.7E-16 2.1E-20 112.5 8.7 126 10-139 283-415 (1381)
13 PHA02785 IL-beta-binding prote 99.6 3E-14 6.5E-19 95.3 14.1 109 17-129 82-202 (326)
14 cd04968 Ig3_Contactin_like Thi 99.6 5.2E-14 1.1E-18 76.9 11.3 79 57-139 4-87 (88)
15 cd05745 Ig3_Peroxidasin Third 99.6 1.3E-14 2.8E-19 76.8 7.9 68 68-139 1-74 (74)
16 cd05735 Ig8_DSCAM Eight immuno 99.6 5.4E-14 1.2E-18 76.8 9.8 73 69-145 1-87 (88)
17 cd05863 Ig2_VEGFR-3 Second imm 99.6 3E-14 6.6E-19 73.4 7.9 64 72-139 1-65 (67)
18 cd05747 Ig5_Titin_like M5, fif 99.6 8.9E-14 1.9E-18 76.6 10.3 80 54-137 3-91 (92)
19 cd05737 Ig_Myomesin_like_C C-t 99.6 1.2E-13 2.6E-18 76.1 10.3 74 61-138 8-91 (92)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.5E-13 3.4E-18 74.6 10.2 73 63-139 4-86 (86)
21 cd05852 Ig5_Contactin-1 Fifth 99.6 4.7E-14 1E-18 74.2 7.9 67 69-139 1-73 (73)
22 PF07679 I-set: Immunoglobulin 99.5 2E-13 4.3E-18 74.9 9.8 80 56-139 2-90 (90)
23 cd05728 Ig4_Contactin-2-like F 99.5 1.2E-13 2.6E-18 75.0 8.6 76 60-139 5-85 (85)
24 cd05730 Ig3_NCAM-1_like Third 99.5 2.7E-13 5.7E-18 75.2 10.1 75 63-141 12-94 (95)
25 cd04975 Ig4_SCFR_like Fourth i 99.5 2.2E-13 4.8E-18 76.0 9.6 75 62-140 11-100 (101)
26 cd05867 Ig4_L1-CAM_like Fourth 99.5 2.4E-13 5.2E-18 72.2 9.0 67 69-139 1-75 (76)
27 cd05854 Ig6_Contactin-2 Sixth 99.5 3.3E-13 7.1E-18 73.2 9.4 70 70-143 1-85 (85)
28 cd05724 Ig2_Robo Second immuno 99.5 4E-13 8.7E-18 73.1 9.8 75 61-138 3-85 (86)
29 cd05853 Ig6_Contactin-4 Sixth 99.5 2E-13 4.4E-18 73.5 8.2 72 70-143 1-85 (85)
30 cd04972 Ig_TrkABC_d4 Fourth do 99.5 6.7E-13 1.4E-17 72.8 10.1 75 61-139 7-90 (90)
31 cd05869 Ig5_NCAM-1 Fifth immun 99.5 1E-12 2.2E-17 73.1 10.8 80 56-139 4-97 (97)
32 cd04969 Ig5_Contactin_like Fif 99.5 2.7E-13 5.9E-18 71.5 8.1 67 69-139 1-73 (73)
33 cd05868 Ig4_NrCAM Fourth immun 99.5 3.8E-13 8.3E-18 71.4 8.6 67 69-139 1-75 (76)
34 cd05865 Ig1_NCAM-1 First immun 99.5 9.5E-13 2E-17 72.9 10.4 78 59-139 5-95 (96)
35 cd04973 Ig1_FGFR First immunog 99.5 6.3E-13 1.4E-17 71.1 9.2 73 62-138 2-78 (79)
36 cd05857 Ig2_FGFR Second immuno 99.5 6.5E-13 1.4E-17 72.1 9.4 72 64-139 4-85 (85)
37 cd05859 Ig4_PDGFR-alpha Fourth 99.5 4.9E-13 1.1E-17 74.7 9.0 74 63-140 12-100 (101)
38 cd05773 Ig8_hNephrin_like Eigh 99.5 1.2E-12 2.7E-17 74.2 10.7 73 68-144 22-109 (109)
39 cd05891 Ig_M-protein_C C-termi 99.5 9.3E-13 2E-17 72.5 9.6 75 60-138 7-91 (92)
40 cd05892 Ig_Myotilin_C C-termin 99.5 4.6E-13 1E-17 70.7 7.9 64 72-139 1-75 (75)
41 cd05723 Ig4_Neogenin Fourth im 99.5 7.6E-13 1.6E-17 69.4 8.5 65 71-139 1-71 (71)
42 cd04970 Ig6_Contactin_like Six 99.5 6.8E-13 1.5E-17 72.0 8.6 70 70-143 1-85 (85)
43 cd05748 Ig_Titin_like Immunogl 99.5 1.1E-12 2.4E-17 69.3 8.8 65 71-139 1-74 (74)
44 cd05722 Ig1_Neogenin First imm 99.5 1.5E-12 3.3E-17 72.1 9.6 78 59-139 4-95 (95)
45 cd04978 Ig4_L1-NrCAM_like Four 99.5 1E-12 2.2E-17 69.8 8.6 67 69-139 1-75 (76)
46 cd05864 Ig2_VEGFR-2 Second imm 99.5 6E-13 1.3E-17 69.3 7.4 64 72-139 1-68 (70)
47 cd05850 Ig1_Contactin-2 First 99.5 3.4E-12 7.3E-17 70.5 10.7 79 57-138 4-93 (94)
48 cd07693 Ig1_Robo First immunog 99.5 2.1E-12 4.5E-17 72.1 10.0 82 55-139 2-99 (100)
49 cd04976 Ig2_VEGFR Second immun 99.5 6.9E-13 1.5E-17 69.5 7.6 64 72-139 1-69 (71)
50 cd05848 Ig1_Contactin-5 First 99.5 2.5E-12 5.4E-17 71.1 10.0 67 68-137 18-92 (94)
51 cd05740 Ig_CEACAM_D4 Fourth im 99.5 2.2E-12 4.7E-17 70.8 9.5 76 61-139 10-90 (91)
52 cd05876 Ig3_L1-CAM Third immun 99.5 1.1E-12 2.4E-17 68.7 7.8 64 72-139 1-70 (71)
53 cd05753 Ig2_FcgammaR_like Seco 99.4 1.3E-12 2.7E-17 70.5 8.1 75 62-139 7-83 (83)
54 cd05893 Ig_Palladin_C C-termin 99.4 1.1E-12 2.3E-17 69.4 7.6 64 72-139 1-75 (75)
55 cd05732 Ig5_NCAM-1_like Fifth 99.4 3.6E-12 7.8E-17 70.7 10.2 75 61-139 8-96 (96)
56 cd05856 Ig2_FGFRL1-like Second 99.4 1.7E-12 3.7E-17 69.9 8.5 70 65-138 5-81 (82)
57 cd05749 Ig2_Tyro3_like Second 99.4 3E-12 6.5E-17 68.6 9.2 73 60-137 4-80 (81)
58 cd05866 Ig1_NCAM-2 First immun 99.4 3.7E-12 8E-17 69.9 9.5 76 60-139 6-91 (92)
59 cd04977 Ig1_NCAM-1_like First 99.4 4.2E-12 9E-17 69.9 9.8 77 59-139 5-92 (92)
60 cd05725 Ig3_Robo Third immunog 99.4 1.9E-12 4E-17 67.5 7.5 64 72-139 1-69 (69)
61 cd05849 Ig1_Contactin-1 First 99.4 7.3E-12 1.6E-16 69.0 10.2 66 69-137 19-91 (93)
62 cd05746 Ig4_Peroxidasin Fourth 99.4 1.2E-12 2.7E-17 68.2 6.7 62 72-137 1-68 (69)
63 cd05870 Ig5_NCAM-2 Fifth immun 99.4 5.2E-12 1.1E-16 70.4 9.7 75 61-139 8-98 (98)
64 cd05743 Ig_Perlecan_D2_like Im 99.4 3E-12 6.5E-17 68.3 8.2 66 69-138 1-75 (78)
65 cd05744 Ig_Myotilin_C_like Imm 99.4 3.6E-12 7.8E-17 67.5 8.3 64 72-139 1-75 (75)
66 cd05760 Ig2_PTK7 Second immuno 99.4 3.5E-12 7.5E-17 67.9 8.2 67 72-141 1-76 (77)
67 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 3.4E-12 7.5E-17 67.4 7.9 65 72-139 1-73 (74)
68 cd05731 Ig3_L1-CAM_like Third 99.4 2.5E-12 5.4E-17 67.4 7.3 64 72-139 1-70 (71)
69 cd05726 Ig4_Robo Fhird immunog 99.4 4.9E-12 1.1E-16 69.4 8.6 70 69-142 1-84 (90)
70 cd05764 Ig_2 Subgroup of the i 99.4 4.7E-12 1E-16 66.9 7.8 67 69-139 1-74 (74)
71 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 9.1E-12 2E-16 64.8 8.4 63 69-137 1-68 (69)
72 cd05752 Ig1_FcgammaR_like Frst 99.4 5.2E-12 1.1E-16 67.2 7.4 75 56-138 2-77 (78)
73 cd05855 Ig_TrkB_d5 Fifth domai 99.4 7.7E-12 1.7E-16 66.5 7.8 60 74-137 3-76 (79)
74 cd05763 Ig_1 Subgroup of the i 99.4 8.8E-12 1.9E-16 66.0 8.1 64 72-139 1-74 (75)
75 KOG4222|consensus 99.3 7.6E-12 1.6E-16 92.2 8.8 117 9-128 268-400 (1281)
76 cd05758 Ig5_KIRREL3-like Fifth 99.3 5.3E-11 1.1E-15 66.3 10.3 74 60-137 7-97 (98)
77 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 2.4E-11 5.2E-16 65.2 8.4 61 74-138 3-79 (81)
78 cd04974 Ig3_FGFR Third immunog 99.3 2.2E-11 4.7E-16 66.8 8.3 67 69-139 1-89 (90)
79 cd05736 Ig2_Follistatin_like S 99.3 2.6E-11 5.7E-16 64.4 8.0 64 73-140 2-74 (76)
80 cd05742 Ig1_VEGFR_like First i 99.3 4E-11 8.6E-16 64.9 8.7 67 69-139 1-83 (84)
81 cd05756 Ig1_IL1R_like First im 99.3 3.2E-11 6.9E-16 66.5 8.4 73 63-139 8-94 (94)
82 cd05858 Ig3_FGFR-2 Third immun 99.3 2.8E-11 6.1E-16 66.3 8.1 67 69-139 1-89 (90)
83 cd05733 Ig6_L1-CAM_like Sixth 99.3 2E-11 4.3E-16 65.0 6.8 63 72-137 1-76 (77)
84 cd05754 Ig3_Perlecan_like Thir 99.3 9.6E-11 2.1E-15 63.5 9.6 74 60-137 7-84 (85)
85 cd05874 Ig6_NrCAM Sixth immuno 99.3 3.8E-11 8.2E-16 63.8 7.5 63 72-137 1-76 (77)
86 cd05765 Ig_3 Subgroup of the i 99.3 4.8E-11 1E-15 64.1 7.9 67 69-139 1-81 (81)
87 cd04967 Ig1_Contactin First Ig 99.3 1.1E-10 2.4E-15 64.1 9.0 60 68-130 18-85 (91)
88 cd04979 Ig_Semaphorin_C Immuno 99.3 1.3E-10 2.8E-15 63.6 9.2 77 61-140 3-87 (89)
89 cd07702 Ig2_VEGFR-1 Second imm 99.3 4.5E-11 9.8E-16 62.5 6.9 53 73-128 2-60 (72)
90 cd05873 Ig_Sema4D_like Immunog 99.3 1.8E-10 3.8E-15 62.4 9.3 64 60-126 2-70 (87)
91 cd05875 Ig6_hNeurofascin_like 99.3 8.5E-11 1.9E-15 62.5 7.6 63 72-137 1-76 (77)
92 cd05729 Ig2_FGFR_like Second i 99.2 2.4E-10 5.2E-15 61.8 9.6 71 64-138 4-84 (85)
93 cd05898 Ig5_KIRREL3 Fifth immu 99.2 5E-10 1.1E-14 61.9 10.8 76 59-137 6-97 (98)
94 cd05734 Ig7_DSCAM Seventh immu 99.2 7.4E-11 1.6E-15 63.1 7.3 65 72-139 1-79 (79)
95 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 4.4E-10 9.6E-15 60.7 9.9 69 69-140 1-83 (84)
96 cd05750 Ig_Pro_neuregulin Immu 99.2 2.1E-10 4.6E-15 60.6 7.6 60 72-135 1-73 (75)
97 cd05895 Ig_Pro_neuregulin-1 Im 99.2 2E-10 4.4E-15 60.9 7.5 59 72-134 1-73 (76)
98 cd05757 Ig2_IL1R_like Second i 99.2 3.3E-10 7.1E-15 62.2 8.2 62 64-128 5-76 (92)
99 cd05882 Ig1_Necl-1 First (N-te 99.1 1.7E-09 3.6E-14 59.7 9.4 72 62-138 5-94 (95)
100 PF13895 Ig_2: Immunoglobulin 99.1 6.1E-10 1.3E-14 59.4 7.4 71 64-139 9-80 (80)
101 cd05727 Ig2_Contactin-2-like S 99.1 8E-10 1.7E-14 60.7 7.0 63 63-128 12-84 (96)
102 cd05853 Ig6_Contactin-4 Sixth 99.1 4E-10 8.7E-15 60.8 5.3 39 17-55 47-85 (85)
103 cd07701 Ig1_Necl-3 First (N-te 99.1 3.9E-09 8.4E-14 58.4 9.3 73 62-139 5-95 (95)
104 smart00408 IGc2 Immunoglobulin 99.1 1.6E-09 3.4E-14 54.8 7.1 58 68-128 1-63 (63)
105 cd05871 Ig_Semaphorin_classIII 99.0 6.8E-09 1.5E-13 56.9 9.4 74 64-141 6-90 (91)
106 cd05852 Ig5_Contactin-1 Fifth 99.0 1E-09 2.2E-14 57.7 5.8 47 5-51 26-73 (73)
107 cd05860 Ig4_SCFR Fourth immuno 99.0 1.4E-08 3E-13 56.1 9.8 75 62-140 11-100 (101)
108 cd05862 Ig1_VEGFR First immuno 99.0 1.1E-08 2.3E-13 55.6 8.5 70 69-140 1-85 (86)
109 PF00047 ig: Immunoglobulin do 99.0 2.7E-09 5.7E-14 54.6 5.7 52 69-123 1-64 (64)
110 cd05762 Ig8_MLCK Eighth immuno 99.0 3.7E-09 8E-14 58.8 6.5 51 5-55 40-94 (98)
111 cd05751 Ig1_LILRB1_like First 99.0 1.4E-08 3.1E-13 55.6 8.8 80 56-139 4-90 (91)
112 cd05854 Ig6_Contactin-2 Sixth 99.0 2.1E-09 4.6E-14 58.2 5.2 39 17-55 47-85 (85)
113 smart00409 IG Immunoglobulin. 99.0 4.9E-08 1.1E-12 52.2 10.7 73 63-139 3-85 (86)
114 smart00410 IG_like Immunoglobu 99.0 4.9E-08 1.1E-12 52.2 10.7 73 63-139 3-85 (86)
115 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.4E-08 3.1E-13 56.2 7.9 75 63-138 9-103 (104)
116 cd05845 Ig2_L1-CAM_like Second 98.9 8.5E-09 1.8E-13 56.6 6.7 64 62-128 11-83 (95)
117 cd05885 Ig2_Necl-4 Second immu 98.9 2E-08 4.4E-13 53.3 7.9 54 72-128 2-67 (80)
118 cd05897 Ig2_IL1R2_like Second 98.9 1.8E-08 4E-13 55.4 7.5 65 64-128 5-79 (95)
119 cd04970 Ig6_Contactin_like Six 98.9 3.9E-09 8.5E-14 57.2 4.8 39 17-55 47-85 (85)
120 cd04969 Ig5_Contactin_like Fif 98.9 9E-09 1.9E-13 54.1 6.0 47 5-51 26-73 (73)
121 cd07690 Ig1_CD4 First immunogl 98.9 1.5E-08 3.3E-13 55.7 6.7 62 64-128 2-89 (94)
122 cd05723 Ig4_Neogenin Fourth im 98.9 1.2E-08 2.6E-13 53.3 6.1 46 6-51 25-71 (71)
123 cd05735 Ig8_DSCAM Eight immuno 98.9 6.4E-09 1.4E-13 56.7 5.1 39 17-55 47-85 (88)
124 cd05892 Ig_Myotilin_C C-termin 98.9 1.3E-08 2.8E-13 53.7 5.9 43 9-51 28-75 (75)
125 cd05745 Ig3_Peroxidasin Third 98.9 1E-08 2.2E-13 54.1 5.5 44 8-51 30-74 (74)
126 cd05851 Ig3_Contactin-1 Third 98.9 1.2E-08 2.5E-13 55.7 5.8 45 8-52 44-88 (88)
127 cd05726 Ig4_Robo Fhird immunog 98.9 1.4E-08 3E-13 55.6 6.2 47 8-54 37-84 (90)
128 cd04976 Ig2_VEGFR Second immun 98.8 1.5E-08 3.4E-13 52.9 5.8 46 6-51 24-69 (71)
129 cd05717 Ig1_Necl-1-3_like Firs 98.8 1.1E-07 2.3E-12 52.6 9.3 64 62-128 5-86 (95)
130 cd05872 Ig_Sema4B_like Immunog 98.8 6.9E-08 1.5E-12 52.0 7.9 59 63-124 5-67 (85)
131 cd05867 Ig4_L1-CAM_like Fourth 98.8 2.5E-08 5.3E-13 52.8 6.2 42 10-51 34-75 (76)
132 cd05746 Ig4_Peroxidasin Fourth 98.8 2.3E-08 5E-13 51.9 6.0 45 5-49 23-68 (69)
133 cd05725 Ig3_Robo Third immunog 98.8 2.1E-08 4.5E-13 52.1 5.6 42 10-51 27-69 (69)
134 cd05748 Ig_Titin_like Immunogl 98.8 3.1E-08 6.6E-13 52.2 6.2 46 6-51 25-74 (74)
135 cd04973 Ig1_FGFR First immunog 98.8 2.3E-08 5E-13 53.4 5.7 47 5-51 33-79 (79)
136 cd05763 Ig_1 Subgroup of the i 98.8 3.2E-08 6.9E-13 52.3 6.2 44 9-52 30-75 (75)
137 cd05893 Ig_Palladin_C C-termin 98.8 2.5E-08 5.5E-13 52.6 5.6 43 9-51 28-75 (75)
138 cd05728 Ig4_Contactin-2-like F 98.8 2.6E-08 5.7E-13 53.9 5.7 47 5-51 39-85 (85)
139 cd05774 Ig_CEACAM_D1 First imm 98.8 1.4E-07 3.1E-12 52.9 8.1 73 63-138 7-104 (105)
140 cd05741 Ig_CEACAM_D1_like Firs 98.7 1.4E-07 3.1E-12 51.7 7.5 67 69-138 1-91 (92)
141 PHA02826 IL-1 receptor-like pr 98.7 1.3E-07 2.8E-12 60.4 8.1 79 62-141 30-134 (227)
142 cd04968 Ig3_Contactin_like Thi 98.7 9.3E-08 2E-12 52.1 6.5 40 13-52 49-88 (88)
143 cd05876 Ig3_L1-CAM Third immun 98.7 6.7E-08 1.5E-12 50.5 5.5 35 17-51 36-70 (71)
144 cd04974 Ig3_FGFR Third immunog 98.7 2.9E-08 6.4E-13 54.3 4.0 36 17-52 55-90 (90)
145 cd05764 Ig_2 Subgroup of the i 98.7 9.9E-08 2.1E-12 50.2 5.9 44 8-51 30-74 (74)
146 cd05870 Ig5_NCAM-2 Fifth immun 98.7 6.5E-08 1.4E-12 53.8 5.3 43 9-51 52-98 (98)
147 cd05863 Ig2_VEGFR-3 Second imm 98.7 5.5E-08 1.2E-12 50.1 4.7 36 17-52 31-66 (67)
148 cd05756 Ig1_IL1R_like First im 98.7 8.4E-08 1.8E-12 52.9 5.5 42 10-51 53-94 (94)
149 cd05714 Ig_CSPGs_LP Immunoglob 98.7 4.8E-07 1E-11 51.0 8.4 73 68-141 1-104 (106)
150 cd05894 Ig_C5_MyBP-C C5 immuno 98.7 1.5E-07 3.2E-12 51.1 6.1 42 10-51 41-86 (86)
151 cd05730 Ig3_NCAM-1_like Third 98.7 2.1E-07 4.6E-12 51.4 6.8 44 10-53 49-94 (95)
152 cd05868 Ig4_NrCAM Fourth immun 98.6 1.5E-07 3.3E-12 49.8 5.8 39 14-52 38-76 (76)
153 cd05865 Ig1_NCAM-1 First immun 98.6 8.9E-08 1.9E-12 53.0 4.9 35 17-51 60-95 (96)
154 cd05738 Ig2_RPTP_IIa_LAR_like 98.6 2E-07 4.3E-12 49.1 6.0 44 8-51 28-73 (74)
155 cd05744 Ig_Myotilin_C_like Imm 98.6 9.3E-08 2E-12 50.5 4.7 34 18-51 42-75 (75)
156 cd05877 Ig_LP_like Immunoglobu 98.6 5.1E-07 1.1E-11 50.9 8.0 73 68-141 1-104 (106)
157 cd05759 Ig2_KIRREL3-like Secon 98.6 5.7E-07 1.2E-11 48.3 7.7 54 72-128 2-70 (82)
158 PHA03376 BARF1; Provisional 98.6 2E-07 4.4E-12 56.7 6.4 76 17-95 87-163 (221)
159 cd05765 Ig_3 Subgroup of the i 98.6 1.6E-07 3.5E-12 50.2 5.5 35 17-51 47-81 (81)
160 cd05866 Ig1_NCAM-2 First immun 98.6 2.2E-07 4.8E-12 51.0 6.0 47 5-51 40-91 (92)
161 cd05858 Ig3_FGFR-2 Third immun 98.6 4.8E-08 1E-12 53.5 3.4 35 17-51 55-89 (90)
162 PF13927 Ig_3: Immunoglobulin 98.6 1.3E-07 2.7E-12 49.6 4.8 66 56-125 3-75 (75)
163 cd05881 Ig1_Necl-2 First (N-te 98.6 2E-06 4.4E-11 47.4 9.6 61 62-125 5-83 (95)
164 cd04978 Ig4_L1-NrCAM_like Four 98.6 1.7E-07 3.8E-12 49.5 5.2 37 15-51 39-75 (76)
165 cd05734 Ig7_DSCAM Seventh immu 98.6 2.6E-07 5.6E-12 49.2 5.9 42 9-50 35-78 (79)
166 cd05869 Ig5_NCAM-1 Fifth immun 98.6 2.1E-07 4.5E-12 51.6 5.6 35 17-51 63-97 (97)
167 cd05879 Ig_P0 Immunoglobulin ( 98.6 2.1E-06 4.4E-11 49.2 9.7 68 61-128 5-104 (116)
168 cd04971 Ig_TrKABC_d5 Fifth dom 98.6 1.4E-07 3.1E-12 50.5 4.7 34 17-50 46-79 (81)
169 cd05737 Ig_Myomesin_like_C C-t 98.6 2.3E-07 4.9E-12 51.0 5.6 35 17-51 58-92 (92)
170 cd05731 Ig3_L1-CAM_like Third 98.6 1.2E-07 2.5E-12 49.5 4.1 35 17-51 36-70 (71)
171 cd05760 Ig2_PTK7 Second immuno 98.6 4.5E-07 9.9E-12 48.1 6.4 36 17-52 38-75 (77)
172 cd05732 Ig5_NCAM-1_like Fifth 98.6 2.3E-07 4.9E-12 51.3 5.4 35 17-51 62-96 (96)
173 cd05742 Ig1_VEGFR_like First i 98.6 1.6E-07 3.6E-12 50.6 4.7 36 17-52 49-84 (84)
174 PF07679 I-set: Immunoglobulin 98.6 1.8E-07 3.9E-12 51.0 4.7 46 6-51 41-90 (90)
175 cd05886 Ig1_Nectin-1_like Firs 98.6 4.3E-07 9.4E-12 50.5 6.2 43 10-52 51-99 (99)
176 cd04983 IgV_TCR_alpha_like Imm 98.6 8.6E-07 1.9E-11 50.2 7.6 65 60-127 4-93 (109)
177 cd05883 Ig2_Necl-2 Second immu 98.5 1.8E-06 3.9E-11 46.1 8.2 66 72-140 2-80 (82)
178 cd05862 Ig1_VEGFR First immuno 98.5 1.9E-07 4.2E-12 50.6 4.4 36 17-52 50-85 (86)
179 cd04975 Ig4_SCFR_like Fourth i 98.5 1.8E-07 4E-12 52.2 4.4 36 17-52 65-100 (101)
180 cd05864 Ig2_VEGFR-2 Second imm 98.5 2E-07 4.4E-12 48.4 4.2 36 16-51 33-68 (70)
181 cd05747 Ig5_Titin_like M5, fif 98.5 5.7E-07 1.2E-11 49.4 6.1 44 6-49 44-91 (92)
182 cd05855 Ig_TrkB_d5 Fifth domai 98.5 2.6E-07 5.5E-12 49.2 4.5 34 17-50 44-77 (79)
183 cd05743 Ig_Perlecan_D2_like Im 98.5 3.2E-07 7E-12 48.8 4.9 45 6-50 27-75 (78)
184 cd05740 Ig_CEACAM_D4 Fourth im 98.5 5.7E-07 1.2E-11 49.3 6.0 42 10-51 46-90 (91)
185 cd05859 Ig4_PDGFR-alpha Fourth 98.5 2.2E-07 4.8E-12 51.9 4.4 36 17-52 65-100 (101)
186 cd05736 Ig2_Follistatin_like S 98.5 8.2E-07 1.8E-11 46.9 6.4 42 11-52 31-74 (76)
187 cd05773 Ig8_hNephrin_like Eigh 98.5 4E-07 8.6E-12 51.6 5.1 39 17-55 69-108 (109)
188 cd05711 Ig_FcalphaRI Immunoglo 98.5 2.8E-06 6.1E-11 46.8 8.3 59 63-124 9-75 (94)
189 cd05775 Ig_SLAM-CD84_like_N N- 98.5 8.6E-07 1.9E-11 49.2 6.3 70 67-139 2-96 (97)
190 cd05886 Ig1_Nectin-1_like Firs 98.5 5E-06 1.1E-10 46.2 9.1 36 103-139 62-98 (99)
191 cd07702 Ig2_VEGFR-1 Second imm 98.5 7.6E-07 1.7E-11 46.5 5.5 40 10-49 29-68 (72)
192 cd05878 Ig_Aggrecan_like Immun 98.5 2.3E-06 5.1E-11 48.6 7.8 38 103-141 71-108 (110)
193 cd05757 Ig2_IL1R_like Second i 98.5 1.3E-06 2.7E-11 48.0 6.5 32 15-46 50-81 (92)
194 cd05861 Ig1_PDGFR-alphabeta Fr 98.5 6.2E-07 1.3E-11 48.4 5.2 36 17-52 46-83 (84)
195 cd05713 Ig_MOG_like Immunoglob 98.5 3.3E-06 7.1E-11 47.1 8.2 35 104-139 65-99 (100)
196 cd04977 Ig1_NCAM-1_like First 98.4 9.4E-07 2E-11 48.5 5.6 34 17-50 57-91 (92)
197 cd05857 Ig2_FGFR Second immuno 98.4 6.5E-07 1.4E-11 48.3 4.8 35 17-51 51-85 (85)
198 cd05871 Ig_Semaphorin_classIII 98.4 1.5E-06 3.3E-11 47.6 6.2 46 8-53 44-90 (91)
199 cd05887 Ig1_Nectin-3_like Firs 98.4 1.5E-06 3.3E-11 47.9 6.0 37 16-52 59-96 (96)
200 cd05900 Ig_Aggrecan Immunoglob 98.4 4.1E-06 8.9E-11 47.6 7.8 38 103-141 73-110 (112)
201 cd05902 Ig_Neurocan Immunoglob 98.4 4.9E-06 1.1E-10 47.2 7.7 38 103-141 71-108 (110)
202 cd05856 Ig2_FGFRL1-like Second 98.4 6.4E-07 1.4E-11 47.9 4.0 35 17-51 48-82 (82)
203 cd04972 Ig_TrkABC_d4 Fourth do 98.4 8.7E-07 1.9E-11 48.4 4.5 35 17-51 56-90 (90)
204 cd05880 Ig_EVA1 Immunoglobulin 98.4 1.1E-05 2.5E-10 46.1 9.1 68 61-128 5-103 (115)
205 cd05724 Ig2_Robo Second immuno 98.4 1.9E-06 4.1E-11 46.6 5.7 42 9-50 42-85 (86)
206 cd05715 Ig_P0-like Immunoglobu 98.4 1.3E-05 2.7E-10 46.0 9.4 68 61-128 5-104 (116)
207 cd05887 Ig1_Nectin-3_like Firs 98.4 1.7E-05 3.6E-10 43.8 9.4 36 103-139 59-95 (96)
208 cd05901 Ig_Versican Immunoglob 98.4 1E-05 2.2E-10 46.2 8.6 38 103-141 78-115 (117)
209 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1.7E-06 3.7E-11 48.1 5.3 42 10-51 63-104 (104)
210 cd05891 Ig_M-protein_C C-termi 98.4 7.5E-07 1.6E-11 48.9 4.0 34 18-51 59-92 (92)
211 cd07694 Ig2_CD4 Second immunog 98.4 1.7E-05 3.6E-10 42.6 8.8 60 64-126 9-73 (88)
212 PHA02633 hypothetical protein; 98.3 3.9E-06 8.4E-11 41.6 5.8 38 17-54 18-55 (63)
213 cd05895 Ig_Pro_neuregulin-1 Im 98.3 1E-06 2.2E-11 46.6 4.0 31 17-47 44-74 (76)
214 cd05888 Ig1_Nectin-4_like Frst 98.3 2.7E-06 6E-11 47.4 6.0 35 17-51 64-99 (100)
215 cd05774 Ig_CEACAM_D1 First imm 98.3 2.4E-06 5.3E-11 48.0 5.7 42 9-50 61-104 (105)
216 cd05718 Ig1_PVR_like First imm 98.3 1.7E-05 3.8E-10 43.9 9.1 36 103-139 61-97 (98)
217 cd05850 Ig1_Contactin-2 First 98.3 4E-06 8.6E-11 46.2 6.3 42 8-49 49-92 (94)
218 cd05846 Ig1_MRC-OX-2_like Firs 98.3 1E-05 2.2E-10 44.8 7.9 36 103-139 60-96 (97)
219 cd05755 Ig2_ICAM-1_like Second 98.3 1.1E-05 2.3E-10 44.9 7.8 67 58-128 5-86 (100)
220 cd05899 IgV_TCR_beta Immunoglo 98.3 9.5E-06 2.1E-10 46.0 7.8 65 59-126 3-94 (110)
221 cd05739 Ig3_RPTP_IIa_LAR_like 98.3 3.8E-06 8.3E-11 43.5 5.5 39 9-49 30-68 (69)
222 cd05750 Ig_Pro_neuregulin Immu 98.3 1.5E-06 3.2E-11 45.7 4.0 32 17-48 43-74 (75)
223 cd05888 Ig1_Nectin-4_like Frst 98.3 2.6E-05 5.7E-10 43.5 9.0 36 103-139 63-99 (100)
224 cd05741 Ig_CEACAM_D1_like Firs 98.3 4.2E-06 9.2E-11 45.8 5.5 41 10-50 49-91 (92)
225 cd05713 Ig_MOG_like Immunoglob 98.3 2.6E-06 5.7E-11 47.4 4.8 35 17-51 65-99 (100)
226 cd05714 Ig_CSPGs_LP Immunoglob 98.3 2.7E-06 5.9E-11 47.9 4.8 37 17-53 68-104 (106)
227 cd00099 IgV Immunoglobulin var 98.3 8.2E-06 1.8E-10 45.8 6.7 60 65-127 2-90 (105)
228 cd04979 Ig_Semaphorin_C Immuno 98.2 4.8E-06 1E-10 45.4 5.5 44 10-53 44-88 (89)
229 PF07686 V-set: Immunoglobulin 98.2 9.2E-06 2E-10 46.0 6.9 75 61-138 8-113 (114)
230 cd05877 Ig_LP_like Immunoglobu 98.2 4.4E-06 9.4E-11 47.1 5.4 44 10-53 56-104 (106)
231 cd05873 Ig_Sema4D_like Immunog 98.2 6E-06 1.3E-10 44.7 5.6 30 10-39 41-70 (87)
232 cd05775 Ig_SLAM-CD84_like_N N- 98.2 4.2E-06 9.1E-11 46.4 5.1 42 10-51 52-96 (97)
233 cd05849 Ig1_Contactin-1 First 98.2 1E-05 2.2E-10 44.6 6.4 41 9-49 49-91 (93)
234 cd04980 IgV_L_kappa Immunoglob 98.2 2.7E-05 5.8E-10 43.9 8.3 66 58-125 4-92 (106)
235 cd05848 Ig1_Contactin-5 First 98.2 6.6E-06 1.4E-10 45.3 5.6 35 10-44 51-86 (94)
236 cd05878 Ig_Aggrecan_like Immun 98.2 6.4E-06 1.4E-10 46.8 5.4 37 17-53 72-108 (110)
237 cd05900 Ig_Aggrecan Immunoglob 98.2 8E-06 1.7E-10 46.5 5.7 37 17-53 74-110 (112)
238 PHA02987 Ig domain OX-2-like p 98.2 2.9E-05 6.2E-10 47.5 8.3 77 63-142 24-124 (189)
239 cd05882 Ig1_Necl-1 First (N-te 98.2 6.5E-06 1.4E-10 45.5 5.1 31 8-38 48-83 (95)
240 cd05754 Ig3_Perlecan_like Thir 98.2 3.8E-06 8.3E-11 45.3 4.0 34 16-49 51-84 (85)
241 cd05901 Ig_Versican Immunoglob 98.2 1E-05 2.2E-10 46.2 5.7 37 17-53 79-115 (117)
242 cd07701 Ig1_Necl-3 First (N-te 98.2 6.9E-06 1.5E-10 45.4 5.0 43 8-51 48-95 (95)
243 cd05761 Ig2_Necl-1-4_like Seco 98.1 3.9E-05 8.5E-10 41.1 7.6 54 72-128 2-69 (82)
244 cd04984 IgV_L_lambda Immunoglo 98.1 3.1E-05 6.7E-10 43.0 7.1 58 65-125 2-84 (98)
245 cd05718 Ig1_PVR_like First imm 98.1 9.8E-06 2.1E-10 44.9 5.1 36 17-52 62-98 (98)
246 cd05902 Ig_Neurocan Immunoglob 98.1 9.3E-06 2E-10 46.0 4.7 37 17-53 72-108 (110)
247 cd05846 Ig1_MRC-OX-2_like Firs 98.1 1.3E-05 2.9E-10 44.4 5.2 36 17-52 61-97 (97)
248 cd04967 Ig1_Contactin First Ig 98.1 1.5E-05 3.3E-10 43.6 5.3 36 9-44 50-86 (91)
249 cd05758 Ig5_KIRREL3-like Fifth 98.1 1.6E-05 3.4E-10 44.2 5.2 33 17-49 64-97 (98)
250 cd05717 Ig1_Necl-1-3_like Firs 98.1 1.6E-05 3.5E-10 43.8 5.2 42 9-51 49-95 (95)
251 cd00098 IgC Immunoglobulin Con 98.1 3.3E-05 7E-10 42.5 6.4 60 67-128 11-86 (95)
252 cd05879 Ig_P0 Immunoglobulin ( 98.0 2.2E-05 4.7E-10 45.0 5.6 34 17-50 80-115 (116)
253 cd05733 Ig6_L1-CAM_like Sixth 98.0 2.4E-05 5.3E-10 41.4 5.4 36 9-44 29-70 (77)
254 cd07706 IgV_TCR_delta Immunogl 98.0 5.1E-05 1.1E-09 43.5 6.8 64 59-125 4-93 (116)
255 cd05716 Ig_pIgR Immunoglobulin 98.0 8.6E-05 1.9E-09 41.1 7.3 60 64-126 2-86 (98)
256 cd05897 Ig2_IL1R2_like Second 98.0 1.7E-05 3.8E-10 43.6 4.3 26 17-42 55-80 (95)
257 cd05889 Ig1_DNAM-1_like First 98.0 4.2E-05 9.1E-10 42.3 5.8 32 17-48 60-92 (96)
258 cd05722 Ig1_Neogenin First imm 98.0 2.9E-05 6.4E-10 42.8 5.3 35 17-51 54-95 (95)
259 cd07705 Ig2_Necl-1 Second immu 98.0 0.0002 4.4E-09 38.5 8.4 54 72-128 2-70 (83)
260 cd05729 Ig2_FGFR_like Second i 98.0 1.7E-05 3.7E-10 42.5 4.2 35 17-51 51-85 (85)
261 cd05875 Ig6_hNeurofascin_like 98.0 5.3E-05 1.2E-09 40.1 5.9 40 7-46 27-72 (77)
262 cd05889 Ig1_DNAM-1_like First 98.0 0.00022 4.7E-09 39.4 8.5 26 103-128 59-85 (96)
263 cd05884 Ig2_Necl-3 Second immu 98.0 0.00013 2.9E-09 39.2 7.4 54 72-128 2-70 (83)
264 cd05727 Ig2_Contactin-2-like S 98.0 1E-05 2.2E-10 44.6 3.1 24 17-40 60-83 (96)
265 cd05874 Ig6_NrCAM Sixth immuno 97.9 6.2E-05 1.4E-09 39.8 5.9 37 9-45 29-71 (77)
266 cd05872 Ig_Sema4B_like Immunog 97.9 5.2E-05 1.1E-09 40.9 5.5 47 5-51 35-82 (85)
267 cd05753 Ig2_FcgammaR_like Seco 97.9 1.1E-05 2.3E-10 43.5 2.7 34 17-50 48-82 (83)
268 smart00410 IG_like Immunoglobu 97.9 9.2E-05 2E-09 39.2 6.5 43 9-51 39-85 (86)
269 smart00409 IG Immunoglobulin. 97.9 9.2E-05 2E-09 39.2 6.5 43 9-51 39-85 (86)
270 cd05712 Ig_Siglec_N Immunoglob 97.9 0.00027 5.9E-09 40.7 8.3 67 60-126 5-102 (119)
271 cd04982 IgV_TCR_gamma Immunogl 97.9 0.00016 3.4E-09 41.4 7.2 63 60-125 4-98 (116)
272 cd05898 Ig5_KIRREL3 Fifth immu 97.9 6.2E-05 1.3E-09 41.7 5.2 41 9-49 48-97 (98)
273 cd05881 Ig1_Necl-2 First (N-te 97.8 8.8E-05 1.9E-09 40.9 5.4 32 8-39 48-84 (95)
274 cd07693 Ig1_Robo First immunog 97.8 9.8E-05 2.1E-09 40.8 5.1 28 24-51 71-99 (100)
275 cd05752 Ig1_FcgammaR_like Frst 97.8 3.3E-05 7.1E-10 41.0 2.8 22 17-39 47-68 (78)
276 cd05845 Ig2_L1-CAM_like Second 97.7 5.6E-05 1.2E-09 41.6 3.6 35 6-40 46-82 (95)
277 cd07700 IgV_CD8_beta Immunoglo 97.7 0.00051 1.1E-08 38.7 7.6 58 65-124 2-92 (107)
278 cd00096 Ig Immunoglobulin doma 97.7 0.00032 7E-09 35.4 6.3 53 72-127 1-66 (74)
279 PF08205 C2-set_2: CD80-like C 97.7 0.00031 6.7E-09 38.1 6.4 57 69-128 14-85 (89)
280 cd05880 Ig_EVA1 Immunoglobulin 97.7 0.00011 2.3E-09 42.1 4.6 25 17-41 79-103 (115)
281 smart00408 IGc2 Immunoglobulin 97.7 7.6E-05 1.6E-09 37.2 3.3 25 17-41 39-63 (63)
282 cd05715 Ig_P0-like Immunoglobu 97.6 0.00017 3.6E-09 41.4 4.9 24 17-40 80-103 (116)
283 cd07690 Ig1_CD4 First immunogl 97.6 5.2E-05 1.1E-09 41.7 2.6 25 17-41 65-89 (94)
284 KOG3515|consensus 97.6 0.00029 6.4E-09 51.9 7.0 107 17-126 59-185 (741)
285 smart00407 IGc1 Immunoglobulin 97.5 0.0015 3.3E-08 34.3 7.4 54 72-127 2-71 (75)
286 cd05720 Ig_CD8_alpha Immunoglo 97.5 0.00041 8.9E-09 38.9 5.4 57 66-125 3-90 (104)
287 PHA02987 Ig domain OX-2-like p 97.5 0.0004 8.7E-09 42.7 5.5 38 17-54 85-124 (189)
288 cd05860 Ig4_SCFR Fourth immuno 97.5 0.00031 6.6E-09 39.0 4.6 36 17-52 65-100 (101)
289 cd07698 IgC_MHC_I_alpha3 Class 97.5 0.0017 3.7E-08 35.6 7.4 57 69-127 14-83 (93)
290 PF07686 V-set: Immunoglobulin 97.5 0.00015 3.2E-09 41.0 3.0 35 17-51 79-114 (114)
291 PF00047 ig: Immunoglobulin do 97.4 0.00014 3E-09 36.8 2.4 18 19-36 47-64 (64)
292 cd05772 IgC_SIRP Signal-regula 97.3 0.0063 1.4E-07 34.6 8.5 59 66-127 18-92 (111)
293 PHA02633 hypothetical protein; 97.3 0.0011 2.5E-08 33.0 4.7 40 103-143 17-56 (63)
294 cd05847 IgC_CH2_IgE CH2 domain 97.3 0.0029 6.3E-08 34.9 6.7 59 68-128 13-87 (94)
295 cd07699 IgC_L Immunoglobulin C 97.3 0.0018 3.8E-08 36.1 5.9 60 66-127 14-89 (100)
296 cd05749 Ig2_Tyro3_like Second 97.3 0.00072 1.6E-08 36.2 4.0 28 16-45 48-75 (81)
297 cd04983 IgV_TCR_alpha_like Imm 97.2 0.00046 9.9E-09 38.9 3.4 32 8-39 55-92 (109)
298 cd05751 Ig1_LILRB1_like First 97.2 0.00045 9.7E-09 37.8 3.2 23 17-39 53-75 (91)
299 PHA03269 envelope glycoprotein 97.2 0.017 3.7E-07 40.8 11.2 80 17-99 289-373 (566)
300 PHA03273 envelope glycoprotein 97.2 0.02 4.3E-07 40.2 11.4 78 18-98 199-280 (486)
301 cd04981 IgV_H Immunoglobulin ( 97.2 0.0034 7.4E-08 36.0 6.5 64 61-125 4-97 (117)
302 cd05767 IgC_MHC_II_alpha Class 97.1 0.0064 1.4E-07 33.5 7.1 54 68-126 14-83 (94)
303 smart00406 IGv Immunoglobulin 97.1 0.0014 3.1E-08 34.5 4.4 21 103-123 61-81 (81)
304 PF13927 Ig_3: Immunoglobulin 97.1 0.00038 8.3E-09 36.0 2.1 22 17-38 54-75 (75)
305 PHA03270 envelope glycoprotein 97.1 0.025 5.3E-07 39.4 10.8 79 17-98 182-264 (466)
306 PF13895 Ig_2: Immunoglobulin 97.1 0.00063 1.4E-08 35.8 2.8 35 17-51 45-80 (80)
307 cd07692 Ig_CD3_epsilon Immunog 97.1 0.0024 5.3E-08 32.3 4.7 51 67-125 5-55 (65)
308 cd00099 IgV Immunoglobulin var 97.1 0.00046 9.9E-09 38.6 2.2 25 17-41 67-91 (105)
309 cd05770 IgC_beta2m Class I maj 97.1 0.0096 2.1E-07 32.7 7.3 57 67-126 13-82 (93)
310 cd05766 IgC_MHC_II_beta Class 97.0 0.011 2.3E-07 32.6 7.3 56 68-128 13-84 (94)
311 cd05899 IgV_TCR_beta Immunoglo 97.0 0.0013 2.8E-08 37.3 3.7 31 9-39 59-94 (110)
312 PF07654 C1-set: Immunoglobuli 97.0 0.0094 2E-07 31.9 6.9 56 68-128 7-78 (83)
313 cd05768 IgC_CH4 CH4 domain (fo 97.0 0.0054 1.2E-07 34.3 6.0 30 66-97 13-44 (102)
314 cd05719 Ig2_PVR_like Second im 97.0 0.013 2.7E-07 32.4 7.3 56 70-128 16-83 (95)
315 cd04984 IgV_L_lambda Immunoglo 97.0 0.0016 3.5E-08 36.0 3.8 29 10-38 52-84 (98)
316 cd05716 Ig_pIgR Immunoglobulin 96.9 0.0024 5.1E-08 35.3 4.2 23 17-39 64-86 (98)
317 smart00406 IGv Immunoglobulin 96.9 0.00048 1.1E-08 36.4 1.4 28 9-36 48-81 (81)
318 cd05712 Ig_Siglec_N Immunoglob 96.9 0.0018 3.8E-08 37.3 3.6 30 10-39 67-102 (119)
319 PHA03376 BARF1; Provisional 96.9 0.013 2.7E-07 36.4 7.2 65 63-127 20-110 (221)
320 cd07703 Ig2_Nectin-2_like Seco 96.8 0.013 2.8E-07 32.3 6.6 56 70-128 16-83 (95)
321 KOG3515|consensus 96.8 0.011 2.3E-07 44.2 7.9 121 17-139 458-589 (741)
322 cd07691 Ig_CD3_gamma_delta Imm 96.8 0.0083 1.8E-07 30.7 5.2 48 70-125 7-54 (69)
323 cd04980 IgV_L_kappa Immunoglob 96.8 0.0015 3.4E-08 36.7 3.0 29 10-38 60-92 (106)
324 cd07689 Ig2_VCAM-1 Second immu 96.8 0.014 3E-07 32.3 6.4 59 66-126 12-85 (99)
325 cd05769 IgC_TCR_beta T cell re 96.7 0.012 2.5E-07 33.8 5.9 60 67-128 16-93 (115)
326 PF08204 V-set_CD47: CD47 immu 96.6 0.0043 9.2E-08 36.1 3.8 72 67-140 25-120 (130)
327 cd07697 IgC_TCR_gamma T cell r 96.6 0.046 9.9E-07 30.2 7.6 56 67-126 14-84 (96)
328 cd07706 IgV_TCR_delta Immunogl 96.5 0.0027 5.9E-08 36.3 2.4 30 9-38 58-93 (116)
329 cd04986 IgC_CH2 CH2 domain (se 96.4 0.025 5.3E-07 31.5 5.9 61 66-128 16-90 (99)
330 cd05720 Ig_CD8_alpha Immunoglo 96.4 0.0035 7.5E-08 35.2 2.6 30 9-38 57-90 (104)
331 cd04985 IgC_CH1 CH1 domain (fi 96.3 0.059 1.3E-06 29.7 7.1 27 68-96 15-43 (95)
332 cd07694 Ig2_CD4 Second immunog 96.3 0.028 6E-07 30.4 5.5 36 17-52 51-86 (88)
333 PF11465 Receptor_2B4: Natural 96.3 0.024 5.1E-07 31.7 5.3 42 10-51 62-106 (108)
334 cd04982 IgV_TCR_gamma Immunogl 96.2 0.0034 7.5E-08 35.8 1.9 30 9-38 63-98 (116)
335 KOG1480|consensus 96.2 0.0042 9.2E-08 46.0 2.6 79 59-140 134-219 (909)
336 PHA02914 Immunoglobulin-like d 96.2 0.26 5.6E-06 34.4 10.6 62 65-126 275-368 (500)
337 PHA03271 envelope glycoprotein 96.1 0.29 6.3E-06 34.3 12.5 79 17-98 207-290 (490)
338 cd05759 Ig2_KIRREL3-like Secon 96.0 0.028 6E-07 29.9 4.8 24 17-40 46-69 (82)
339 cd07704 Ig2_Nectin-3-4_like Se 96.0 0.11 2.3E-06 28.9 7.1 62 64-128 11-85 (97)
340 cd05771 IgC_Tapasin_R Tapasin- 96.0 0.019 4E-07 34.0 4.5 25 104-128 1-25 (139)
341 cd07696 IgC_CH3 CH3 domain (th 96.0 0.032 6.9E-07 30.8 5.0 30 64-95 9-41 (96)
342 cd07700 IgV_CD8_beta Immunoglo 96.0 0.0059 1.3E-07 34.4 2.1 21 18-38 73-93 (107)
343 PF07354 Sp38: Zona-pellucida- 95.9 0.012 2.7E-07 38.2 3.3 34 6-39 25-59 (271)
344 cd05885 Ig2_Necl-4 Second immu 95.7 0.019 4.2E-07 30.6 3.3 26 17-42 43-68 (80)
345 cd05711 Ig_FcalphaRI Immunoglo 95.7 0.018 4E-07 31.6 3.3 21 17-37 55-75 (94)
346 PHA03042 CD47-like protein; Pr 95.7 0.11 2.4E-06 34.1 7.0 71 67-139 29-104 (286)
347 cd00096 Ig Immunoglobulin doma 95.4 0.038 8.1E-07 27.3 3.8 24 17-40 43-66 (74)
348 PF07354 Sp38: Zona-pellucida- 95.3 0.038 8.3E-07 36.0 4.0 41 85-125 12-58 (271)
349 PHA03052 Hypothetical protein; 95.2 0.1 2.2E-06 26.5 4.7 37 61-97 4-41 (69)
350 cd05721 IgV_CTLA-4 Immunoglobu 94.9 0.34 7.4E-06 27.7 6.7 62 63-124 7-94 (115)
351 cd04981 IgV_H Immunoglobulin ( 94.9 0.02 4.3E-07 32.9 1.8 29 10-38 63-97 (117)
352 PF11465 Receptor_2B4: Natural 94.6 0.19 4E-06 28.3 5.0 37 103-139 70-106 (108)
353 PF03921 ICAM_N: Intercellular 94.3 0.45 9.7E-06 26.1 7.0 82 57-144 6-90 (91)
354 PHA02982 hypothetical protein; 94.0 0.26 5.5E-06 31.3 5.2 62 64-128 34-124 (251)
355 PHA02914 Immunoglobulin-like d 93.7 1.7 3.6E-05 30.6 9.1 106 17-129 346-469 (500)
356 cd07691 Ig_CD3_gamma_delta Imm 93.1 0.18 3.9E-06 25.9 3.0 22 17-38 33-54 (69)
357 cd05721 IgV_CTLA-4 Immunoglobu 92.3 0.2 4.3E-06 28.7 2.8 20 17-36 74-93 (115)
358 PHA03283 envelope glycoprotein 90.8 5 0.00011 29.3 13.2 37 17-53 134-170 (542)
359 KOG4597|consensus 89.5 0.91 2E-05 32.5 4.4 72 64-139 206-291 (560)
360 PF05790 C2-set: Immunoglobuli 89.1 2.2 4.8E-05 22.7 6.2 34 17-50 43-77 (80)
361 PF08204 V-set_CD47: CD47 immu 88.7 0.29 6.2E-06 28.7 1.4 35 17-52 86-120 (130)
362 PHA03282 envelope glycoprotein 88.2 1.9 4E-05 31.0 5.2 44 9-52 116-161 (540)
363 PF06328 Lep_receptor_Ig: Ig-l 87.2 3.4 7.3E-05 22.6 6.0 62 62-123 11-81 (89)
364 cd05883 Ig2_Necl-2 Second immu 86.2 3.2 7E-05 22.2 4.4 36 17-52 44-80 (82)
365 PF01688 Herpes_gI: Alphaherpe 85.9 2.6 5.5E-05 25.8 4.3 25 17-41 124-148 (161)
366 PF05790 C2-set: Immunoglobuli 80.7 6.7 0.00015 20.9 6.9 38 85-124 26-63 (80)
367 KOG1480|consensus 79.0 1.9 4.2E-05 33.0 2.4 26 17-42 183-208 (909)
368 PHA03282 envelope glycoprotein 78.8 5.6 0.00012 28.8 4.4 30 17-47 333-362 (540)
369 PHA03286 envelope glycoprotein 76.3 7.6 0.00016 28.0 4.5 31 17-48 307-337 (492)
370 PF05955 Herpes_gp2: Equine he 76.0 17 0.00036 22.8 5.4 49 75-126 113-178 (226)
371 PHA02982 hypothetical protein; 73.2 22 0.00048 23.0 12.0 69 17-95 100-172 (251)
372 PHA03289 envelope glycoprotein 72.6 12 0.00027 25.7 4.6 26 17-42 122-147 (352)
373 PHA03290 envelope glycoprotein 72.5 12 0.00026 25.8 4.6 25 17-41 129-153 (357)
374 PF02480 Herpes_gE: Alphaherpe 71.9 14 0.0003 26.8 5.0 39 9-48 259-299 (439)
375 KOG4597|consensus 71.5 4.8 0.0001 29.2 2.7 36 17-52 257-292 (560)
376 PHA03292 envelope glycoprotein 70.9 12 0.00025 26.4 4.3 26 17-42 128-153 (413)
377 PHA03189 UL14 tegument protein 67.3 12 0.00026 25.6 3.7 20 23-42 139-158 (348)
378 TIGR00864 PCC polycystin catio 65.3 1.2E+02 0.0025 28.1 12.6 69 24-95 1834-1906(2740)
379 PHA03283 envelope glycoprotein 64.2 19 0.00041 26.6 4.4 23 17-39 315-337 (542)
380 PHA02865 MHC-like TNF binding 62.8 49 0.0011 23.2 6.0 21 71-93 216-238 (338)
381 PHA03291 envelope glycoprotein 56.1 34 0.00075 24.0 4.4 36 17-52 129-164 (401)
382 PHA03281 envelope glycoprotein 55.8 33 0.0007 25.7 4.4 31 17-48 475-505 (642)
383 PHA03286 envelope glycoprotein 53.0 66 0.0014 23.6 5.4 36 17-52 127-163 (492)
384 KOG0613|consensus 52.8 84 0.0018 26.3 6.5 110 17-128 278-417 (1205)
385 PHA02935 Hypothetical protein; 52.8 46 0.001 21.3 4.3 37 17-53 102-139 (349)
386 PF11049 KSHV_K1: Glycoprotein 47.1 41 0.00088 17.3 3.1 43 74-125 3-45 (71)
387 PHA03281 envelope glycoprotein 44.1 1.4E+02 0.0031 22.7 11.9 37 17-53 298-335 (642)
388 PF02480 Herpes_gE: Alphaherpe 43.7 7.7 0.00017 28.0 0.0 40 103-142 88-127 (439)
389 TIGR00864 PCC polycystin catio 42.0 3E+02 0.0066 25.9 11.8 108 26-142 1666-1780(2740)
390 PF06938 DUF1285: Protein of u 40.5 7 0.00015 23.6 -0.5 12 89-100 8-19 (148)
391 PF15096 G6B: G6B family 39.3 31 0.00068 21.8 2.1 26 24-52 81-106 (224)
392 PF06832 BiPBP_C: Penicillin-B 39.2 64 0.0014 17.3 8.8 53 71-129 31-83 (89)
393 PHA03240 envelope glycoprotein 38.0 18 0.00038 23.4 0.9 22 15-36 103-124 (258)
394 cd05890 Ig2_Nectin-1_like Seco 36.7 80 0.0017 17.7 5.3 62 72-137 23-96 (98)
395 PHA03290 envelope glycoprotein 36.4 1.3E+02 0.0029 21.1 4.8 23 103-125 128-150 (357)
396 COG5475 Uncharacterized small 31.0 62 0.0014 16.0 2.0 14 116-129 28-41 (60)
397 PF02124 Marek_A: Marek's dise 30.5 1.6E+02 0.0034 19.2 10.2 23 73-96 93-116 (211)
398 PF11781 RRN7: RNA polymerase 29.3 30 0.00064 15.3 0.7 10 26-35 20-29 (36)
399 PF11088 RL11D: Glycoprotein e 25.8 1.3E+02 0.0028 16.8 2.9 21 17-37 60-80 (98)
400 PF13220 DUF4028: Protein of u 25.1 66 0.0014 15.6 1.5 19 24-42 5-23 (65)
401 KOG3611|consensus 24.4 1.3E+02 0.0028 23.8 3.6 49 5-53 599-649 (737)
No 1
>KOG3513|consensus
Probab=99.88 E-value=3.4e-21 Score=139.78 Aligned_cols=135 Identities=26% Similarity=0.432 Sum_probs=116.2
Q ss_pred CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC-ceEEeCCCc--EEEecCCcEEEEEEec-CCCCC
Q psy11131 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP-YRVDVNPPL--LSVHLDGSANFQCEIT-PYDSG 84 (150)
Q Consensus 9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~-~~~~~~~~~--~~~~~g~~~~l~C~~~-~p~~~ 84 (150)
++++.+..+.|.|.++..+|+|.|+|.+.|.+|...+.+.|.|.+. |.+...+.. ..+..|..+.|.|... .|
T Consensus 378 ~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP--- 454 (1051)
T KOG3513|consen 378 DPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASP--- 454 (1051)
T ss_pred CcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCC---
Confidence 3458888899999999999999999999999999999999999975 566655543 4677899999999999 99
Q ss_pred CcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcccc
Q psy11131 85 PYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH 147 (150)
Q Consensus 85 ~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~~ 147 (150)
.+.+.|.+.+..+....+ ...|.|.+++.+|.|.|+|.|.|.+| ....+..|.|.+++.++.
T Consensus 455 ~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G-~a~~~~~L~Vkd~tri~~ 521 (1051)
T KOG3513|consen 455 KPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLG-KAESTGNLIVKDATRITL 521 (1051)
T ss_pred cceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccC-ccceEEEEEEecCceEEe
Confidence 999999998774444433 67999999999999999999999999 789999999988876653
No 2
>KOG3513|consensus
Probab=99.87 E-value=7.4e-21 Score=138.05 Aligned_cols=125 Identities=26% Similarity=0.457 Sum_probs=115.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR 95 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~ 95 (150)
..|.|.|+...|.|.|.|.+.|..|.......|+|.++|.+...+....+..|+.+.+.|.+. .| .|.+.|.+++.
T Consensus 294 ~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P---~p~v~WlkNg~ 370 (1051)
T KOG3513|consen 294 KVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKP---NPTVKWLKNGE 370 (1051)
T ss_pred cEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCC---CCceEEeeCCe
Confidence 789999999999999999999999999999999999999998888889999999999999999 99 99999999998
Q ss_pred ccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131 96 QIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI 145 (150)
Q Consensus 96 ~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~ 145 (150)
.+....+ ...|.|.++...|+|.|.|.+.|..| .....+.|.|.+.+|.
T Consensus 371 pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G-~i~anA~L~V~a~~P~ 426 (1051)
T KOG3513|consen 371 PLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYG-TIYANAELKVLASAPV 426 (1051)
T ss_pred ecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccc-eEeeeeEEEEEccCCC
Confidence 8764433 67999999999999999999999999 7889999999887554
No 3
>KOG4194|consensus
Probab=99.80 E-value=1.4e-18 Score=120.04 Aligned_cols=125 Identities=30% Similarity=0.473 Sum_probs=109.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG 94 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~ 94 (150)
+.|++.||+..|.|.|+|.+.|..|+. +..++|+|...|.+...|....+..|+...+.|.+. .| .|.+.|.++|
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P---~PeIawqkdg 650 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHP---RPEIAWQKDG 650 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCC---CcceeehhcC
Confidence 679999999999999999999998874 567899999999999999999999999999999999 99 9999999987
Q ss_pred cc-cCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCcc
Q psy11131 95 RQ-IPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI 145 (150)
Q Consensus 95 ~~-~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~ 145 (150)
.. .+.... ...+.|.++..+|.|.|+|.++|.+| ..+..+.+.|.+.|..
T Consensus 651 gtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG-~isanAtL~V~e~p~f 709 (873)
T KOG4194|consen 651 GTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAG-QISANATLTVLETPSF 709 (873)
T ss_pred CCCCchhhhheeeecCCCCEEEEecccccccceeEEeeecccc-ceeeceEEEEecCCcc
Confidence 65 322211 56889999999999999999999999 6889999999887643
No 4
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.77 E-value=3e-17 Score=103.91 Aligned_cols=106 Identities=24% Similarity=0.377 Sum_probs=84.0
Q ss_pred CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CC--CCCCcEEEEee
Q psy11131 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PY--DSGPYLIAWFK 92 (150)
Q Consensus 16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p--~~~~~~~~w~~ 92 (150)
+++|.|.+++.+|+|.|.|.+.|..+.......|.|..+ +....+.+|+.+.|.|.+. .+ ..-.|.+.|++
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK 170 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK 170 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence 368999999999999999999998777777788888542 2234567899999999975 31 00168999999
Q ss_pred cCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 93 DGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 93 ~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
++..+..... ...|.|.++..+|+|.|.|.+....
T Consensus 171 ng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 171 NGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 9988764432 3579999999999999999998653
No 5
>KOG4194|consensus
Probab=99.72 E-value=2e-16 Score=109.59 Aligned_cols=122 Identities=24% Similarity=0.340 Sum_probs=100.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR 95 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~ 95 (150)
.-+.|.|++.+|+|.|+|.+.|..|..++.+.|+|.+.|.+...-....+..|+++.+.|.+. .|. .|+..|++.++
T Consensus 669 d~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a--~pr~~W~k~d~ 746 (873)
T KOG4194|consen 669 DVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPA--DPRLEWFKEDK 746 (873)
T ss_pred CEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCC--CccccccCCCC
Confidence 668899999999999999999999999999999999988777666677889999999999999 661 39999999887
Q ss_pred ccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 96 QIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 96 ~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
.+-...+ .--+.+.....+|.|.|+|...+..| .....+.+.+..
T Consensus 747 pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~-~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 747 PILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLG-TERIHICLLVYQ 797 (873)
T ss_pred ceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecc-ceeeEEEEEEee
Confidence 7643332 45677888889999999999999988 444444444433
No 6
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.72 E-value=1.4e-15 Score=101.65 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=87.2
Q ss_pred CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCccee----EEEEEEEec--CceEEeCCCcEEEecCCcEEEEEEec-CC
Q psy11131 10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEAT----AEVRLQVST--PYRVDVNPPLLSVHLDGSANFQCEIT-PY 81 (150)
Q Consensus 10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~l~v~~--~~~~~~~~~~~~~~~g~~~~l~C~~~-~p 81 (150)
.|+.... +.|.|.+++.+|+|.|+|.+.+..+... ..+.|.|.. .|.....|....+..|+.+.|.|.+. .|
T Consensus 169 ~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P 248 (326)
T PHA02785 169 KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRP 248 (326)
T ss_pred cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCC
Confidence 4554443 7899999999999999999998766533 334566653 22223445666777899999999999 77
Q ss_pred CCCCcEEEEeecCcccCCCc-----c----------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 82 DSGPYLIAWFKDGRQIPGRT-----S----------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 82 ~~~~~~~~w~~~~~~~~~~~-----~----------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
....+.+.|.+++..+.... . ...|.|.++..+|.|.|.|.|.|..|
T Consensus 249 ~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 249 PTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPS 316 (326)
T ss_pred CCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccC
Confidence 21125899999987663210 0 24699999999999999999999876
No 7
>KOG4221|consensus
Probab=99.72 E-value=4.3e-16 Score=114.33 Aligned_cols=138 Identities=22% Similarity=0.356 Sum_probs=109.1
Q ss_pred ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEEecCc------eEEeCCCcEEEecCCcEEEEE
Q psy11131 5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTPY------RVDVNPPLLSVHLDGSANFQC 76 (150)
Q Consensus 5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~------~~~~~~~~~~~~~g~~~~l~C 76 (150)
|+..++|+.... +.|.|.++..+|.|.|+|.+.++. ...+..+.|+|..-+ .+...|....+.+|+.+.|.|
T Consensus 180 pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leC 259 (1381)
T KOG4221|consen 180 PLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLEC 259 (1381)
T ss_pred cccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEE
Confidence 455556776665 899999999999999999999863 234667788887321 234456667788999999999
Q ss_pred Eec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCccc
Q psy11131 77 EIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146 (150)
Q Consensus 77 ~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~~~ 146 (150)
.+. .| .|.+.|.+++..+..+.. ...|.+++++..|+|.|+|++.|..- .....+.+.|..+|...
T Consensus 260 vvs~~p---~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D-~idasaev~V~a~P~~~ 332 (1381)
T KOG4221|consen 260 VVSGVP---KPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTND-SIDASAEVTVLAPPGFT 332 (1381)
T ss_pred EecCCC---CCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCc-ccccceEEEEEcCCCCC
Confidence 999 99 999999999988876643 56899999999999999999998554 45677788888876543
No 8
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.70 E-value=6.7e-16 Score=85.91 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=73.6
Q ss_pred eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
.+...+....+..|+.+.|.|.+. .| .+.+.|++++..+..... .+.|.|..+..+|.|.|+|.+.|.
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~~~G~p---~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 2 QIIQFPEDMKVRAGESVELFCKVTGTQ---PITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred ceEECCcCEEEECCCEEEEEEEEcccC---CCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 344556778889999999999999 99 999999999987754322 467999999999999999999999
Q ss_pred CCCceeeeEEEEEcCcCccc
Q psy11131 127 DGDVAQGSAELQLGGTRNIK 146 (150)
Q Consensus 127 ~g~~~~~~~~l~v~~~p~~~ 146 (150)
.| ....++.|.|.+.|..+
T Consensus 79 ~G-~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 79 LG-SRQAQVNLTVVDKPDPP 97 (98)
T ss_pred CC-ceeEEEEEEEecCCCCC
Confidence 99 68889999998877543
No 9
>KOG4222|consensus
Probab=99.70 E-value=8.2e-17 Score=117.34 Aligned_cols=129 Identities=29% Similarity=0.436 Sum_probs=111.7
Q ss_pred eEEeCCeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEE
Q psy11131 12 TRVLGPILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIA 89 (150)
Q Consensus 12 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~ 89 (150)
..+.++.|.|.|+.++|.|.|.|++.|..|. .+..+.|+|+++|.+...+....+..|..+.+.|.+. +| .|.+.
T Consensus 182 ~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP---~P~Vr 258 (1281)
T KOG4222|consen 182 ALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDP---QPTVR 258 (1281)
T ss_pred EEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCC---CCcee
Confidence 3455699999999999999999999998776 6678999999999999888888999999999999999 99 99999
Q ss_pred EeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcCc
Q psy11131 90 WFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRN 144 (150)
Q Consensus 90 w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p~ 144 (150)
|.+.+..+....- ..++.+.++...|.|.|.|.+.|..| ..+....+.|+++|.
T Consensus 259 wkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG-~l~asa~ltV~apP~ 317 (1281)
T KOG4222|consen 259 WKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVG-GLEASATLTVQAPPS 317 (1281)
T ss_pred eeccCCCCCccceeeeeccccccccccCCCcccceeeecccccc-ccccccceEEecCcc
Confidence 9997776654432 36788888999999999999999999 688888888887764
No 10
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.68 E-value=6.4e-15 Score=87.22 Aligned_cols=109 Identities=24% Similarity=0.382 Sum_probs=80.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCC-cEEEEeec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGP-YLIAWFKD 93 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~-~~~~w~~~ 93 (150)
.+|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+...+.......|..+.|.|.+. .| . ..+.|.++
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P---~~~~i~W~~~ 77 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP---LDVQVEWTRE 77 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC---CCeEEEEEEC
Confidence 379999999999999999998877778888999999988887666555455788899999999 45 4 58999998
Q ss_pred CcccCC------C----------cc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 94 GRQIPG------R----------TS----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 94 ~~~~~~------~----------~~----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
+..... . .. .+.|.+......+...|.|.+.+...
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 753111 0 00 34555554444456689999986543
No 11
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.66 E-value=5e-15 Score=80.88 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=67.0
Q ss_pred ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131 55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGD 129 (150)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~ 129 (150)
|.+...+....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..|
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~~G~P---~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G- 77 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFALGNP---VPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKG- 77 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEecccC---CCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCC-
Confidence 4455566677888999999999999 99 999999998876643322 45799999999999999999999999
Q ss_pred ceeeeEEEEEc
Q psy11131 130 VAQGSAELQLG 140 (150)
Q Consensus 130 ~~~~~~~l~v~ 140 (150)
.....+.|.|+
T Consensus 78 ~~~~~~~l~V~ 88 (88)
T cd05851 78 KDKHQARVYVQ 88 (88)
T ss_pred ceEEEEEEEEC
Confidence 57777777663
No 12
>KOG4221|consensus
Probab=99.64 E-value=9.7e-16 Score=112.52 Aligned_cols=126 Identities=29% Similarity=0.511 Sum_probs=107.0
Q ss_pred CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcE
Q psy11131 10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYL 87 (150)
Q Consensus 10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~ 87 (150)
.|+.+.+ ++|.|++++..|+|.|+|.+.|..-...+.+.|+|.++|.+...|......++.++++.|.+. .| .+.
T Consensus 283 ~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p---~p~ 359 (1381)
T KOG4221|consen 283 YRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKP---IPT 359 (1381)
T ss_pred eEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCC---cce
Confidence 5677765 889999999999999999999977778888899999999888888888888899999999999 99 999
Q ss_pred EEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 88 IAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 88 ~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|++++..+..... ...+.|..+...|.|.|.|.+.|..| .....+.+.+
T Consensus 360 v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G-~a~a~a~l~v 415 (1381)
T KOG4221|consen 360 VRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAG-SAQAAAQLEV 415 (1381)
T ss_pred EEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcc-cccchhhhee
Confidence 999999887655432 33488888889999999999999998 4666666644
No 13
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.63 E-value=3e-14 Score=95.25 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=81.4
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc--eEEeCCCcEEEecCCcEEEEEEe-----c-CCCCCCcEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY--RVDVNPPLLSVHLDGSANFQCEI-----T-PYDSGPYLI 88 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~~~l~C~~-----~-~p~~~~~~~ 88 (150)
..|.|.++..+|+|.|+|.+.|..+.....+.|+|.... .+...+....+.+|....+.|.. . .| .+.+
T Consensus 82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~---~~~i 158 (326)
T PHA02785 82 SNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNV---NADI 158 (326)
T ss_pred ceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCC---CceE
Confidence 358899999999999999999988877778888886432 12222223346688999999972 3 56 7899
Q ss_pred EEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131 89 AWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGD 129 (150)
Q Consensus 89 ~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~ 129 (150)
.|.++.. +..... ...|.|.++..+|.|.|+|.+.|..|.
T Consensus 159 ~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 159 IWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred EEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence 9987542 222111 357999999999999999999998773
No 14
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=5.2e-14 Score=76.93 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=64.7
Q ss_pred EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131 57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVA 131 (150)
Q Consensus 57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~ 131 (150)
+...+....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~ 79 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNP---VPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG-KD 79 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeC---CCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCC-cE
Confidence 44456667788999999999999 99 999999998765543321 57899999999999999999999999 56
Q ss_pred eeeEEEEE
Q psy11131 132 QGSAELQL 139 (150)
Q Consensus 132 ~~~~~l~v 139 (150)
...+.|.|
T Consensus 80 ~~~~~l~V 87 (88)
T cd04968 80 THQGRIYV 87 (88)
T ss_pred EEEEEEEE
Confidence 77777766
No 15
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.60 E-value=1.3e-14 Score=76.77 Aligned_cols=68 Identities=31% Similarity=0.459 Sum_probs=57.3
Q ss_pred cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P---~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYP---QPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVG-SQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEec---CCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCC-ceeEEEEEeC
Confidence 588999999999 99 999999999887654332 45899999999999999999999999 5777766654
No 16
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.58 E-value=5.4e-14 Score=76.78 Aligned_cols=73 Identities=26% Similarity=0.456 Sum_probs=61.7
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c------------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S------------STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
|+.+.|.|.+. .| .+.+.|.+++..+.... + .+.|.|.++..+|.|.|.|.|.|..| .....
T Consensus 1 g~~~~l~C~~~g~p---~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G-~~~~~ 76 (88)
T cd05735 1 GQKKEMSCTAHGEK---PIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYG-EDRGI 76 (88)
T ss_pred CCeEEEEEEEECCC---CCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCC-cceEE
Confidence 67899999999 88 99999999887664321 1 25799999999999999999999999 68889
Q ss_pred EEEEEcCcCcc
Q psy11131 135 AELQLGGTRNI 145 (150)
Q Consensus 135 ~~l~v~~~p~~ 145 (150)
+.|.|.++|..
T Consensus 77 ~~L~V~~~P~~ 87 (88)
T cd05735 77 IQLTVQEPPDP 87 (88)
T ss_pred EEEEEeCCCCC
Confidence 99999888754
No 17
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.58 E-value=3e-14 Score=73.43 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=54.4
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+........|.|.++..+|.|.|+|.+.|..| ..++++.+.+
T Consensus 1 ~~l~c~v~g~P---~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYP---PPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAA-GLEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeC---CCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCc-cEEEEEEEEE
Confidence 36899999 99 99999999998886443367999999999999999999999999 5667766665
No 18
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.58 E-value=8.9e-14 Score=76.63 Aligned_cols=80 Identities=24% Similarity=0.470 Sum_probs=64.9
Q ss_pred CceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131 54 PYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIAR 124 (150)
Q Consensus 54 ~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~ 124 (150)
+|.+...+....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEP---APTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecC---CCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 34555567778899999999999999 99 999999999877654322 3579999999999999999999
Q ss_pred eCCCCceeeeEEE
Q psy11131 125 RSDGDVAQGSAEL 137 (150)
Q Consensus 125 ~~~g~~~~~~~~l 137 (150)
|..| ....++.|
T Consensus 80 N~~G-~~~~~~~l 91 (92)
T cd05747 80 NSEG-KQEAQFTL 91 (92)
T ss_pred cCCC-CEeEEEEe
Confidence 9999 46665554
No 19
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.57 E-value=1.2e-13 Score=76.11 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=60.7
Q ss_pred CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCc
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDV 130 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~ 130 (150)
|....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|+|.|.|.+.|..| .
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~ 83 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDP---DPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG-G 83 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecC---CCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC-c
Confidence 4556788999999999999 99 999999999877654322 24699999999999999999999999 4
Q ss_pred eeeeEEEE
Q psy11131 131 AQGSAELQ 138 (150)
Q Consensus 131 ~~~~~~l~ 138 (150)
....+.+.
T Consensus 84 ~~~~~~v~ 91 (92)
T cd05737 84 ETVDVTVS 91 (92)
T ss_pred ceEEEEEe
Confidence 66666554
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.56 E-value=1.5e-13 Score=74.61 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=60.9
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c--------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S--------STSLVINPVGREDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~ 132 (150)
.+.+.+|+.+.|.|.+. .| .|.+.|++++..+.... + ...|.|..+..+|+|.|.|.+.|..| ...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P---~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G-~~~ 79 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEP---APTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVG-EDH 79 (86)
T ss_pred EEEEEcCCEEEEEeeEeecC---CCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCC-cEE
Confidence 35678899999999999 99 99999999988775432 1 36799999999999999999999999 566
Q ss_pred eeEEEEE
Q psy11131 133 GSAELQL 139 (150)
Q Consensus 133 ~~~~l~v 139 (150)
.++.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 6666653
No 21
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.56 E-value=4.7e-14 Score=74.23 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=55.9
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
|+.+.|.|.+. .| .|.+.|++++..+....+ ...|.|.++..+|.|.|.|.+.|..| ....++.|.|
T Consensus 1 G~~~~l~C~~~g~P---~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAP---KPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRG-KANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeC---CCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCC-ceeEEEEEEC
Confidence 67899999999 99 999999998876543332 46899999999999999999999999 5777776653
No 22
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.54 E-value=2e-13 Score=74.93 Aligned_cols=80 Identities=34% Similarity=0.627 Sum_probs=66.8
Q ss_pred eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
.+...+....+.+|+.+.|.|.+. .| .+.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|.
T Consensus 2 ~~~~~~~~~~v~~G~~~~l~c~~~~~p---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 2 VFTKKPKDVTVKEGESVTLECEVSGNP---PPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEESSEEEEETTSEEEEEEEEEESS---SSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred EEEEecCCEEEeCCCEEEEEEEEEeCC---CCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 444556778899999999999999 88 999999999887765433 578999999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy11131 127 DGDVAQGSAELQL 139 (150)
Q Consensus 127 ~g~~~~~~~~l~v 139 (150)
.| .....+.|.|
T Consensus 79 ~g-~~~~~~~l~V 90 (90)
T PF07679_consen 79 SG-EATASVNLTV 90 (90)
T ss_dssp TE-EEEEEEEEEE
T ss_pred CC-EEEEEEEEEC
Confidence 88 5667776654
No 23
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.54 E-value=1.2e-13 Score=75.00 Aligned_cols=76 Identities=24% Similarity=0.461 Sum_probs=63.4
Q ss_pred CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
.|....+..|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p---~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~~~ 80 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNP---RPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG-TIYAS 80 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeC---CCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCC-eEEEE
Confidence 45567788999999999999 99 999999999887754432 56899999999999999999999999 56666
Q ss_pred EEEEE
Q psy11131 135 AELQL 139 (150)
Q Consensus 135 ~~l~v 139 (150)
+.|.|
T Consensus 81 ~~l~V 85 (85)
T cd05728 81 AELAV 85 (85)
T ss_pred EEEEC
Confidence 66643
No 24
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.54 E-value=2.7e-13 Score=75.19 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=62.7
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC-cc------eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR-TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~-~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
...+..|+.+.|.|.+. .| .|.+.|.+++..+... .. ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~ 87 (95)
T cd05730 12 NATANLGQSVTLACDADGFP---EPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAG-EQEAE 87 (95)
T ss_pred ceEEeCCCCEEEEEeccEeC---CCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCC-eEEEE
Confidence 34678999999999999 99 9999999998776543 11 35799999999999999999999999 57788
Q ss_pred EEEEEcC
Q psy11131 135 AELQLGG 141 (150)
Q Consensus 135 ~~l~v~~ 141 (150)
+.|.|..
T Consensus 88 ~~L~V~~ 94 (95)
T cd05730 88 IHLKVFA 94 (95)
T ss_pred EEEEEEe
Confidence 8887753
No 25
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.53 E-value=2.2e-13 Score=76.01 Aligned_cols=75 Identities=24% Similarity=0.390 Sum_probs=62.8
Q ss_pred CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|+|.|.|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P---~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~ 87 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPP---PPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCC---CCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECC
Confidence 456788999999999998 56 889999999987763322 256999999999999999999999
Q ss_pred CCCceeeeEEEEEc
Q psy11131 127 DGDVAQGSAELQLG 140 (150)
Q Consensus 127 ~g~~~~~~~~l~v~ 140 (150)
.| ..+.++.|.|+
T Consensus 88 ~G-~~~~t~~L~V~ 100 (101)
T cd04975 88 DA-SKSLTFELYVN 100 (101)
T ss_pred Cc-cEEEEEEEEEE
Confidence 99 68888888775
No 26
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.53 E-value=2.4e-13 Score=72.24 Aligned_cols=67 Identities=27% Similarity=0.507 Sum_probs=56.0
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc---c----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT---S----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~---~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
|+.+.|.|.+. .| .|.+.|++++..+.... . ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus 1 G~~v~l~C~~~G~P---~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIP---TPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHG-NLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeC---CCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCC-eEEEEEEEEE
Confidence 67899999999 99 99999999988765321 1 46799999999999999999999999 5667777765
No 27
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.52 E-value=3.3e-13 Score=73.16 Aligned_cols=70 Identities=24% Similarity=0.321 Sum_probs=57.7
Q ss_pred CcEEEEEEec-CCCCCCc--EEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 70 GSANFQCEIT-PYDSGPY--LIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 70 ~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
+.+.|.|.+. .| .| .+.|++++..+.... ....|.|.++...|.|.|+|.|.|..| ..+..
T Consensus 1 ~~~~L~C~a~g~P---~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g-~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDP---TMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVD-SASAS 76 (85)
T ss_pred CcEEEEEEEecCC---CCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCC-CEEEE
Confidence 3688999999 77 55 689999987664321 035799999999999999999999999 68889
Q ss_pred EEEEEcCcC
Q psy11131 135 AELQLGGTR 143 (150)
Q Consensus 135 ~~l~v~~~p 143 (150)
+.|.|.++|
T Consensus 77 ~~L~V~~~P 85 (85)
T cd05854 77 ATLVVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998876
No 28
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.52 E-value=4e-13 Score=73.08 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=60.4
Q ss_pred CCcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131 61 PPLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~ 132 (150)
|....+.+|+.+.|.|.+ . .| .+.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..|...+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p---~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHP---EPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCC---CCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 455678899999999998 5 78 899999998877654221 457999999999999999999999985555
Q ss_pred eeEEEE
Q psy11131 133 GSAELQ 138 (150)
Q Consensus 133 ~~~~l~ 138 (150)
..+.|.
T Consensus 80 ~~~~l~ 85 (86)
T cd05724 80 AAARLS 85 (86)
T ss_pred eeEEEE
Confidence 666554
No 29
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.52 E-value=2e-13 Score=73.54 Aligned_cols=72 Identities=19% Similarity=0.370 Sum_probs=59.1
Q ss_pred CcEEEEEEec-CCCCCCcEEEEeecCcccCCC--c-c---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEE
Q psy11131 70 GSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR--T-S---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136 (150)
Q Consensus 70 ~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~--~-~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~ 136 (150)
+.+.|.|.+. .|.. .+.+.|++++..+... . . ...|.|.+++.+|.|.|+|.|.|..+ ..+.++.
T Consensus 1 ~~~~l~C~v~~d~~l-~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~-~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSL-DIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVD-KLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCC-CcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccC-ceEEEEE
Confidence 3578999997 4422 7899999999888632 1 1 24799999999999999999999998 6899999
Q ss_pred EEEcCcC
Q psy11131 137 LQLGGTR 143 (150)
Q Consensus 137 l~v~~~p 143 (150)
|.|.+||
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 9999887
No 30
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.51 E-value=6.7e-13 Score=72.83 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=61.3
Q ss_pred CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVA 131 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~ 131 (150)
+....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P---~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G-~~ 82 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSP---LPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG-QA 82 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcC---CCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC-ce
Confidence 3445588999999999999 99 999999999876643221 35799999999999999999999999 56
Q ss_pred eeeEEEEE
Q psy11131 132 QGSAELQL 139 (150)
Q Consensus 132 ~~~~~l~v 139 (150)
...+.|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 77766653
No 31
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.51 E-value=1e-12 Score=73.09 Aligned_cols=80 Identities=21% Similarity=0.342 Sum_probs=60.5
Q ss_pred eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-----c--------eeeEEEccCCCCCCceEEE
Q psy11131 56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-----S--------STSLVINPVGREDRGIYQC 121 (150)
Q Consensus 56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-----~--------~~~l~~~~~~~~~~g~y~C 121 (150)
.+...+.......|+.+.|.|.+. .| .|.+.|++++..+.... . .+.|.|.++..+|.|.|.|
T Consensus 4 ~i~~~~~~~~~~~g~~v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C 80 (97)
T cd05869 4 KITYVENQTAMELEEQITLTCEASGDP---IPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLC 80 (97)
T ss_pred eEEEccCceEEEcCCCEEEEEEeeEeC---CCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEE
Confidence 333334444455689999999999 99 99999999775543211 0 3579999999999999999
Q ss_pred EEEeCCCCceeeeEEEEE
Q psy11131 122 IARRSDGDVAQGSAELQL 139 (150)
Q Consensus 122 ~~~~~~g~~~~~~~~l~v 139 (150)
.+.|..| ..+..+.|.|
T Consensus 81 ~A~N~~G-~~~~~~~l~v 97 (97)
T cd05869 81 TASNTIG-QDSQSMYLEV 97 (97)
T ss_pred EEecCCC-CeeEEEEEEC
Confidence 9999999 5777777654
No 32
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=2.7e-13 Score=71.47 Aligned_cols=67 Identities=25% Similarity=0.413 Sum_probs=55.9
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ....++.|.|
T Consensus 1 G~~v~L~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAP---KPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFG-KANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcC---CCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCC-ceEEEEEEEC
Confidence 67899999999 99 999999999887654332 45799999999999999999999999 5777766654
No 33
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.50 E-value=3.8e-13 Score=71.42 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=56.2
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
|+.+.|.|.+. .| .|.+.|.+++..+..... ...|.+..+...|.|.|.|.+.|..| ....++.|.|
T Consensus 1 g~~~~l~C~a~G~P---~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNP---KPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYG-YLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeC---CCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCC-EEEEEEEEEe
Confidence 67899999999 99 999999999887643211 35788999999999999999999999 6777777766
No 34
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.50 E-value=9.5e-13 Score=72.86 Aligned_cols=78 Identities=22% Similarity=0.527 Sum_probs=60.9
Q ss_pred eCCCcEEEecCCcEEEEEEec-CCCCCC-cEEEEee-cCcccCC-Ccc---------eeeEEEccCCCCCCceEEEEEEe
Q psy11131 59 VNPPLLSVHLDGSANFQCEIT-PYDSGP-YLIAWFK-DGRQIPG-RTS---------STSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~-~~~~w~~-~~~~~~~-~~~---------~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
..|....+.+|+.+.|.|.+. .| . |.+.|++ ++..+.. ..+ ...|.|..+..+|.|.|+|.|.|
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P---~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N 81 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEA---KDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSN 81 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCC---CCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEc
Confidence 445556788999999999999 77 5 6999997 6655433 111 25799999999999999999999
Q ss_pred CCCCceeeeEEEEE
Q psy11131 126 SDGDVAQGSAELQL 139 (150)
Q Consensus 126 ~~g~~~~~~~~l~v 139 (150)
..|.....++.|.|
T Consensus 82 ~~~g~~~~s~~l~v 95 (96)
T cd05865 82 EDEGESEATVNVKI 95 (96)
T ss_pred CCCCcEEEEEEEEE
Confidence 97436777877765
No 35
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.50 E-value=6.3e-13 Score=71.11 Aligned_cols=73 Identities=21% Similarity=0.380 Sum_probs=57.3
Q ss_pred CcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
....+.+|+.+.|.|.+..+ .+.+.|++++..+..... ...|.|.++..+|+|.|.|.+.|..| .....+.+
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~---~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g-~~~~~~~v 77 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD---VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSG-SDTTYFSV 77 (79)
T ss_pred CcEEecCCCCEEEEEEecCC---CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCC-cccEEEEE
Confidence 44667899999999998833 457999999987765432 45799999999999999999999888 45555544
Q ss_pred E
Q psy11131 138 Q 138 (150)
Q Consensus 138 ~ 138 (150)
.
T Consensus 78 ~ 78 (79)
T cd04973 78 N 78 (79)
T ss_pred e
Confidence 3
No 36
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.50 E-value=6.5e-13 Score=72.10 Aligned_cols=72 Identities=21% Similarity=0.458 Sum_probs=59.0
Q ss_pred EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131 64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQG 133 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~ 133 (150)
..+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..| ....
T Consensus 4 ~~v~~G~~~~L~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G-~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNP---TPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCC---CCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCC-EEEE
Confidence 3467899999999999 88 999999999887654321 23688889999999999999999999 5777
Q ss_pred eEEEEE
Q psy11131 134 SAELQL 139 (150)
Q Consensus 134 ~~~l~v 139 (150)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 777654
No 37
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.50 E-value=4.9e-13 Score=74.68 Aligned_cols=74 Identities=27% Similarity=0.409 Sum_probs=62.5
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
...+..|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|+|.|.|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P---~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYP---PPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNED 88 (101)
T ss_pred eEEEecCCcEEEEEEEEEeC---CCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCC
Confidence 45677889999999999 99 999999999988764321 2579999999999999999999999
Q ss_pred CCceeeeEEEEEc
Q psy11131 128 GDVAQGSAELQLG 140 (150)
Q Consensus 128 g~~~~~~~~l~v~ 140 (150)
| ..+.++.|.|.
T Consensus 89 g-~~~~t~~l~V~ 100 (101)
T cd05859 89 A-VKSYTFALQIQ 100 (101)
T ss_pred c-eEEEEEEEEEE
Confidence 9 57778877764
No 38
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.49 E-value=1.2e-12 Score=74.19 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=60.1
Q ss_pred cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c------------eeeEEEccCC-CCCCceEEEEEEeCCCCcee
Q psy11131 68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S------------STSLVINPVG-REDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~------------~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~ 132 (150)
.|..+.|.|.+. .| .+.+.|.+++..+.... . .+.|.|.++. .+|.|.|.|.|.|..| ...
T Consensus 22 ~g~~v~L~C~a~G~P---~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G-~~~ 97 (109)
T cd05773 22 GSSDANLVCQAQGVP---RVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLG-EDS 97 (109)
T ss_pred CCCEEEEEEECcccC---CCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCc-cCc
Confidence 567899999999 99 89999999987764321 1 2468888887 5899999999999999 578
Q ss_pred eeEEEEEcCcCc
Q psy11131 133 GSAELQLGGTRN 144 (150)
Q Consensus 133 ~~~~l~v~~~p~ 144 (150)
..+.|.+...|.
T Consensus 98 ~~i~L~~~~~p~ 109 (109)
T cd05773 98 LDIQLVSTSRPD 109 (109)
T ss_pred EEEEEEecCCCC
Confidence 889999888773
No 39
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.49 E-value=9.3e-13 Score=72.48 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=60.8
Q ss_pred CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGD 129 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~ 129 (150)
.|....+.+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P---~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G- 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNP---DPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG- 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeC---CCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC-
Confidence 35567889999999999998 88 899999998876544321 23789999999999999999999999
Q ss_pred ceeeeEEEE
Q psy11131 130 VAQGSAELQ 138 (150)
Q Consensus 130 ~~~~~~~l~ 138 (150)
....++.+.
T Consensus 83 ~~~~~~~v~ 91 (92)
T cd05891 83 GETVDVTVS 91 (92)
T ss_pred ceeeEEEEE
Confidence 566666654
No 40
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.49 E-value=4.6e-13 Score=70.74 Aligned_cols=64 Identities=27% Similarity=0.471 Sum_probs=52.4
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCC-cc---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGR-TS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~-~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+... .+ ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus 1 v~l~C~v~G~P---~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G-~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIP---PPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAG-VATCHARLDV 75 (75)
T ss_pred CEEEEEEEecC---CCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcC-eEEEEEEEeC
Confidence 46899999 99 9999999998877532 11 12699999999999999999999999 5767776654
No 41
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=7.6e-13 Score=69.37 Aligned_cols=65 Identities=31% Similarity=0.540 Sum_probs=53.0
Q ss_pred cEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 71 SANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 71 ~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
.+.|.|.+. .| .|.+.|++++..+..... ...+.+..+..+|.|.|.|.+.|..| ....++.|.|
T Consensus 1 ~v~l~C~~~G~P---~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKP---TPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG-NVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeC---CCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCC-EEEEEEEEEC
Confidence 378999999 99 999999999877654332 34688889999999999999999999 5777776653
No 42
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.48 E-value=6.8e-13 Score=72.02 Aligned_cols=70 Identities=24% Similarity=0.357 Sum_probs=57.5
Q ss_pred CcEEEEEEec-CCCCCCc--EEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 70 GSANFQCEIT-PYDSGPY--LIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 70 ~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
+.+.|.|.+. .| .+ .+.|.+++..+.... ....|.|.++...|+|.|.|.+.|..| ..+..
T Consensus 1 e~~~L~C~~~g~P---~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~~~ 76 (85)
T cd04970 1 ESITLQCHASHDP---TLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVD-SLSAS 76 (85)
T ss_pred CcEEEEEEEecCC---CCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCC-cEEEE
Confidence 3688999999 77 55 679999887664221 145799999999999999999999998 68889
Q ss_pred EEEEEcCcC
Q psy11131 135 AELQLGGTR 143 (150)
Q Consensus 135 ~~l~v~~~p 143 (150)
+.|.|.++|
T Consensus 77 ~~l~V~~pP 85 (85)
T cd04970 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998876
No 43
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.47 E-value=1.1e-12 Score=69.29 Aligned_cols=65 Identities=26% Similarity=0.422 Sum_probs=53.6
Q ss_pred cEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 71 SANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 71 ~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRP---TPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG-EKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeC---CCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCc-cEEEEEEEEC
Confidence 368999999 99 999999999887643322 45799999999999999999999999 5777776654
No 44
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.47 E-value=1.5e-12 Score=72.15 Aligned_cols=78 Identities=28% Similarity=0.509 Sum_probs=60.0
Q ss_pred eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccC-----CCCCCceEEEEEEe
Q psy11131 59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPV-----GREDRGIYQCIARR 125 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~-----~~~~~g~y~C~~~~ 125 (150)
..|....+.+|+.+.|.|.+. .| .|.+.|.+++..+..... ...+.+..+ ...|.|.|.|.+.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEP---PPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCC---CCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 345666778899999999999 99 999999999887753321 234555554 57899999999999
Q ss_pred C-CCCceeeeEEEEE
Q psy11131 126 S-DGDVAQGSAELQL 139 (150)
Q Consensus 126 ~-~g~~~~~~~~l~v 139 (150)
. .|...++.+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 8965577777654
No 45
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.47 E-value=1e-12 Score=69.79 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=56.1
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus 1 G~~~~l~C~~~g~P---~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G-~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIP---QPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHG-YLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeC---CCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCC-eEEEeEEEEE
Confidence 67899999999 99 999999999876643321 56899999999999999999999999 5777777765
No 46
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=6e-13 Score=69.34 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=51.6
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc---eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|+|.+.|..| .......+.+
T Consensus 1 ~~~~c~v~G~P---~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G-~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYP---PPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPIT-KEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeC---CCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCC-ceeeEEEEEE
Confidence 36889999 99 999999999988764422 45799999999999999999999998 3445444443
No 47
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.46 E-value=3.4e-12 Score=70.53 Aligned_cols=79 Identities=27% Similarity=0.406 Sum_probs=57.6
Q ss_pred EEeCCCcEEEecC---CcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c----eeeEEEccCC-CCCCceEEEEEEe
Q psy11131 57 VDVNPPLLSVHLD---GSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S----STSLVINPVG-REDRGIYQCIARR 125 (150)
Q Consensus 57 ~~~~~~~~~~~~g---~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~----~~~l~~~~~~-~~~~g~y~C~~~~ 125 (150)
+...|......+| +.+.|.|.+. .| .+.+.|++++..+.... . ...|.|.++. ..|.|.|.|.|.|
T Consensus 4 f~~~P~~~~~~~~~~g~~v~l~C~a~g~P---~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05850 4 FEEQPSSLLFPEGSPEEKVTLGCRARASP---PATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAIN 80 (94)
T ss_pred eEECCCCEEecCCCCCCeEEEEeEceeCC---CCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEc
Confidence 3344554544444 5799999999 99 99999999998775322 1 4567787654 5899999999999
Q ss_pred CCCCceeeeEEEE
Q psy11131 126 SDGDVAQGSAELQ 138 (150)
Q Consensus 126 ~~g~~~~~~~~l~ 138 (150)
..|...++.+.|+
T Consensus 81 ~~G~~~s~~a~l~ 93 (94)
T cd05850 81 RCGTVVSREANLR 93 (94)
T ss_pred CcCcEEEEEEEEe
Confidence 9996556665553
No 48
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.46 E-value=2.1e-12 Score=72.15 Aligned_cols=82 Identities=30% Similarity=0.533 Sum_probs=61.0
Q ss_pred ceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCC----cc------eeeEE---E--ccCCCCCCce
Q psy11131 55 YRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR----TS------STSLV---I--NPVGREDRGI 118 (150)
Q Consensus 55 ~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~----~~------~~~l~---~--~~~~~~~~g~ 118 (150)
|.+...+....+.+|+.+.|.|.+. .| .|.+.|++++..+... .. ...+. + ..+..+|.|.
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~~g~P---~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKAEGRP---TPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeCCcCC---CCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 4555667778889999999999999 99 9999999998876541 11 11111 1 2236789999
Q ss_pred EEEEEEeCCCCceeeeEEEEE
Q psy11131 119 YQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 119 y~C~~~~~~g~~~~~~~~l~v 139 (150)
|.|.+.|..|...+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 999999999954777777765
No 49
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.46 E-value=6.9e-13 Score=69.49 Aligned_cols=64 Identities=23% Similarity=0.433 Sum_probs=52.7
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|+|.|+|.+.|..| .....+.+.+
T Consensus 1 ~~l~c~v~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g-~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYP---PPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQA-KLEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeC---CCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCc-cEEEEEEEEE
Confidence 36889999 99 999999999987754422 56899999999999999999999998 4666666654
No 50
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.46 E-value=2.5e-12 Score=71.06 Aligned_cols=67 Identities=25% Similarity=0.447 Sum_probs=52.4
Q ss_pred cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCC-CCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVG-REDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|..+. .+|.|.|.|.|.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P---~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNP---VPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecC---CCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 478899999999 99 999999999887753221 4567787764 6899999999999999544555443
No 51
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.46 E-value=2.2e-12 Score=70.80 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=61.2
Q ss_pred CCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~ 135 (150)
+....+.+|+.+.|.|.+... .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..|...+..+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~---~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ---ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred cCccccccCCcEEEEEEeCCC---CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 345578899999999998733 689999999876643321 358999999999999999999999996667777
Q ss_pred EEEE
Q psy11131 136 ELQL 139 (150)
Q Consensus 136 ~l~v 139 (150)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 7776
No 52
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.45 E-value=1.1e-12 Score=68.74 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=52.9
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus 1 ~~L~C~~~G~P---~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLP---TPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG-SARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEec---CCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCC-eEEEEEEEEE
Confidence 46899999 99 999999998776543221 46899999999999999999999999 5777777765
No 53
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.45 E-value=1.3e-12 Score=70.54 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=59.8
Q ss_pred CcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
....+.+|+.+.|.|.+. .+ ...+.|++++..+........|.|..+..+|+|.|.|.+.+..+...++.+.|.|
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~---~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKP---VYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCc---ceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 344688999999999986 45 6789999998776543335789999999999999999999998855666666653
No 54
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.45 E-value=1.1e-12 Score=69.41 Aligned_cols=64 Identities=23% Similarity=0.445 Sum_probs=52.0
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus 1 v~l~C~v~G~P---~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G-~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVP---HPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAG-IVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEec---CCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCC-EEEEEEEEeC
Confidence 46899999 99 999999999887653221 12689999999999999999999999 5777777654
No 55
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.45 E-value=3.6e-12 Score=70.75 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-------------ceeeEEEccCCCCCCceEEEEEEeC
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-------------SSTSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-------------~~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
+....+.+|+.+.|.|.+. .| .|.+.|++++..+.... ....|.|.++..+|.|.|.|.+.|.
T Consensus 8 ~~~~~~~~g~~v~l~C~~~g~p---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 84 (96)
T cd05732 8 LENQTAVELEQITLTCEAEGDP---IPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNR 84 (96)
T ss_pred cCceeEecCCcEEEEEEEeEcC---CCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeC
Confidence 3446778999999999999 99 99999999875443210 0357999999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy11131 127 DGDVAQGSAELQL 139 (150)
Q Consensus 127 ~g~~~~~~~~l~v 139 (150)
.| ..+.++.|.|
T Consensus 85 ~G-~~~~s~~l~v 96 (96)
T cd05732 85 IG-GDQQSMYLEV 96 (96)
T ss_pred CC-CcEEEEEEeC
Confidence 99 4667666653
No 56
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.44 E-value=1.7e-12 Score=69.89 Aligned_cols=70 Identities=19% Similarity=0.367 Sum_probs=56.9
Q ss_pred EEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
....|+.+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ....++.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p---~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVASGNP---RPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAG-EINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEeeEeC---CCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCc-cEEEEEEE
Confidence 456799999999999 88 899999998876643321 36799999999999999999999999 46666655
Q ss_pred E
Q psy11131 138 Q 138 (150)
Q Consensus 138 ~ 138 (150)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 4
No 57
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.44 E-value=3e-12 Score=68.58 Aligned_cols=73 Identities=21% Similarity=0.420 Sum_probs=57.2
Q ss_pred CCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCC--cceeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGR--TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~ 135 (150)
.|....+..|+.+.|.|.+. .| .| .+.|.+++..+... ...+.|.+..+ .|.|.|.|.|.|..|...++.+
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P---~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPP---EPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeec---CCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 45567888999999999999 99 89 79999999877541 12567777766 4789999999999996555555
Q ss_pred EE
Q psy11131 136 EL 137 (150)
Q Consensus 136 ~l 137 (150)
.|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 44
No 58
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.44 E-value=3.7e-12 Score=69.89 Aligned_cols=76 Identities=24% Similarity=0.476 Sum_probs=59.1
Q ss_pred CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGD 129 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~ 129 (150)
.+....+.+|+.+.|.|.+. .| . .+.|+++ +..+....+ ...|.|..+..+|.|.|.|.|.|..|.
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~G~P---~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAIGEP---E-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EecceEEcCCCeEEEEEEEEEeC---C-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 34556788999999999999 88 7 8999974 544432222 247999999999999999999999996
Q ss_pred ceeeeEEEEE
Q psy11131 130 VAQGSAELQL 139 (150)
Q Consensus 130 ~~~~~~~l~v 139 (150)
....++.|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 5566666654
No 59
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=4.2e-12 Score=69.89 Aligned_cols=77 Identities=25% Similarity=0.557 Sum_probs=58.8
Q ss_pred eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEee-cCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFK-DGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~-~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
..|....+..|+.+.|.|.+. .| . .+.|++ ++..+..... ...|.|.++..+|.|.|.|.+.|..
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p---~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 80 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEP---K-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAK 80 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeC---C-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCC
Confidence 445667788999999999998 77 5 899997 4544332111 3589999999999999999999997
Q ss_pred CCceeeeEEEEE
Q psy11131 128 GDVAQGSAELQL 139 (150)
Q Consensus 128 g~~~~~~~~l~v 139 (150)
|.....++.|.|
T Consensus 81 g~~~~~sv~l~~ 92 (92)
T cd04977 81 GTESEATVNLKI 92 (92)
T ss_pred CCcceeEEEEEC
Confidence 755666666643
No 60
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.42 E-value=1.9e-12 Score=67.52 Aligned_cols=64 Identities=31% Similarity=0.512 Sum_probs=51.7
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| .....+.|.|
T Consensus 1 v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDP---VPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG-KIEASASLTV 69 (69)
T ss_pred CEEEEECccCC---CCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCC-cEEEEEEEEC
Confidence 46899999 89 999999998765543321 46899999999999999999999999 5667666653
No 61
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.42 E-value=7.3e-12 Score=68.98 Aligned_cols=66 Identities=27% Similarity=0.410 Sum_probs=51.9
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc-c----eeeEEEccCC-CCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S----STSLVINPVG-REDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~----~~~l~~~~~~-~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+..+.|.|.+. .| .|.+.|++++..+.... . ...|.|.++. .+|.|.|.|.|.|..|...++.+.|
T Consensus 19 ~~~v~l~C~a~G~P---~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANP---FPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCC---CCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 44799999999 99 99999999987764321 1 4678888875 5899999999999999655555554
No 62
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.42 E-value=1.2e-12 Score=68.17 Aligned_cols=62 Identities=34% Similarity=0.521 Sum_probs=50.5
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..+..+.|
T Consensus 1 v~L~C~~~g~P---~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDP---EPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG-YASVSMVL 68 (69)
T ss_pred CEeEecceEeC---CCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCC-cEEEEEEe
Confidence 46899999 99 999999999877654322 56899999999999999999999999 45555544
No 63
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.42 E-value=5.2e-12 Score=70.36 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=58.3
Q ss_pred CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccCCC-----cc--------eeeEEEccCCCCCCceEEEEEE
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIPGR-----TS--------STSLVINPVGREDRGIYQCIAR 124 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~~~-----~~--------~~~l~~~~~~~~~~g~y~C~~~ 124 (150)
+....+.+|+.+.|.|.+. .| .|.+.|++. +..+... .+ ...|.|.++..+|.|.|.|.+.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P---~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 84 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEP---IPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAA 84 (98)
T ss_pred eccEEEcCCCcEEEEEecccCC---CCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEe
Confidence 4557788999999999999 99 999999984 3322110 11 3579999999999999999999
Q ss_pred eCCCCceeeeEEEEE
Q psy11131 125 RSDGDVAQGSAELQL 139 (150)
Q Consensus 125 ~~~g~~~~~~~~l~v 139 (150)
|..| ....++.|.|
T Consensus 85 N~~G-~~~~~~~l~~ 98 (98)
T cd05870 85 SRIG-GHQKSMYLDI 98 (98)
T ss_pred ccCC-cceeEEEEeC
Confidence 9999 5666766653
No 64
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.42 E-value=3e-12 Score=68.34 Aligned_cols=66 Identities=24% Similarity=0.422 Sum_probs=52.8
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~ 138 (150)
|+.+.|.|.+. .| .|.+.|++++..+....+ ...|.|.++..+|.|.|.|.+.|..| .......+.
T Consensus 1 G~~v~l~C~~~g~P---~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVP---TPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG-MVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEec---CCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCC-EEEecccEE
Confidence 67899999999 99 999999998766543322 36799999999999999999999999 454444443
No 65
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.41 E-value=3.6e-12 Score=67.46 Aligned_cols=64 Identities=27% Similarity=0.454 Sum_probs=51.7
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCc-c---------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-S---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~-~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+.... . ...|.|..+..+|.|.|.|.+.|..| .....+.|.|
T Consensus 1 v~L~C~v~G~P---~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIP---PPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAG-VVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecC---CCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC-cEEEEEEEeC
Confidence 46899999 99 99999999988775321 1 12699999999999999999999999 5666666643
No 66
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.41 E-value=3.5e-12 Score=67.91 Aligned_cols=67 Identities=24% Similarity=0.529 Sum_probs=52.4
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCCCce-eeeEEEEEcC
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGG 141 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~-~~~~~l~v~~ 141 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..|... +..+.|.|.+
T Consensus 1 v~L~C~~~g~P---~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~d 76 (77)
T cd05760 1 VTLRCHIDGHP---RPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSIID 76 (77)
T ss_pred CEEEEEeeecC---CCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEec
Confidence 46899999 99 999999999887754321 35799999999999999999999999422 3456666543
No 67
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.41 E-value=3.4e-12 Score=67.40 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=53.0
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCC--cc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGR--TS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~--~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+... .. ...|.|.++..+|.|.|.|.+.|..|...+..+.|.|
T Consensus 1 a~l~C~~~G~P---~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNP---DPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEec---CCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899999 99 9999999998766521 11 4578999999999999999999999965677777766
No 68
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.41 E-value=2.5e-12 Score=67.38 Aligned_cols=64 Identities=28% Similarity=0.495 Sum_probs=52.4
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|
T Consensus 1 v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G-~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLP---TPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG-SARHTISVTV 70 (71)
T ss_pred CEEEEEeeEec---CCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCc-eEEEEEEEEE
Confidence 46899999 99 999999998776543221 45899999999999999999999999 5777777765
No 69
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.40 E-value=4.9e-12 Score=69.38 Aligned_cols=70 Identities=30% Similarity=0.428 Sum_probs=56.8
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccC--------CCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIP--------GRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
|+.+.|.|.+. .| .|.+.|++++..+. ...+ ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus 1 G~~v~L~C~~~g~P---~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G-~~~~~ 76 (90)
T cd05726 1 GRTVTFQCEATGNP---QPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG-SILTK 76 (90)
T ss_pred CCEEEEEEECCccC---CCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCC-ceEEE
Confidence 67899999998 89 99999998775421 1111 35799999999999999999999999 57788
Q ss_pred EEEEEcCc
Q psy11131 135 AELQLGGT 142 (150)
Q Consensus 135 ~~l~v~~~ 142 (150)
+.|.|.+.
T Consensus 77 ~~l~V~~~ 84 (90)
T cd05726 77 AYLEVTDV 84 (90)
T ss_pred EEEEEeec
Confidence 88888764
No 70
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=4.7e-12 Score=66.89 Aligned_cols=67 Identities=27% Similarity=0.489 Sum_probs=53.0
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEee-cCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFK-DGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~-~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
|+.+.|.|.+. .| .|.+.|.+ ++..+..... ...|.|..+..+|.|.|.|.+.|..| ..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P---~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDP---EPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAG-EATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcC---CCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCC-eEEEEEEEEC
Confidence 67899999999 89 99999997 4554433221 45789999999999999999999999 5666666653
No 71
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.38 E-value=9.1e-12 Score=64.80 Aligned_cols=63 Identities=22% Similarity=0.477 Sum_probs=49.2
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
|+.+.|.|.+. .| .|.+.|.+++..+..... ...|.|.++ .|.|.|.|.+.|..| ....++.|
T Consensus 1 G~~v~L~C~a~G~P---~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G-~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAP---MPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLG-MIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecC---CCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCC-EEEEEEEE
Confidence 57899999999 99 999999999877654322 346777776 478999999999999 45555544
No 72
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.38 E-value=5.2e-12 Score=67.24 Aligned_cols=75 Identities=19% Similarity=0.443 Sum_probs=57.4
Q ss_pred eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 56 RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 56 ~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
.+.+.|....+.+|+.+.|.|.+. .|. ...+.|++++..+... ...|.+.++ .+|+|.|.|.+.+. ..+..
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~--~~~~~W~kng~~l~~~--~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~ 73 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPE--QNSTQWYHNGKLLETT--TNSYRIRAA-NNDSGEYRCQTQGS---SLSDP 73 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCC--CccEEEEECCEEeecc--CCeEEEeec-ccCCEEeEEECCCC---cCCCC
Confidence 345567778889999999999998 661 3579999999877332 467889888 99999999999864 24555
Q ss_pred EEEE
Q psy11131 135 AELQ 138 (150)
Q Consensus 135 ~~l~ 138 (150)
+.|.
T Consensus 74 v~l~ 77 (78)
T cd05752 74 VHLE 77 (78)
T ss_pred EEEe
Confidence 5554
No 73
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.37 E-value=7.7e-12 Score=66.48 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=49.3
Q ss_pred EEEEec-CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 74 FQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 74 l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|.|.|.|..| ....++.+
T Consensus 3 i~~~v~G~P---~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G-~~~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNP---KPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYG-EDEKNVSA 76 (79)
T ss_pred EEEEEeEeC---CCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCc-ccceEEEe
Confidence 678888 99 999999999988754321 34789999999999999999999999 46666554
No 74
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.37 E-value=8.8e-12 Score=66.03 Aligned_cols=64 Identities=31% Similarity=0.476 Sum_probs=50.7
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCC---cc------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGR---TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~---~~------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
+.|.|.+. .| .|.+.|++++...... .+ ...|.|.++..+|.|.|.|.+.|..| ..+..+.|.|
T Consensus 1 a~l~C~~~G~P---~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G-~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHP---TPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAG-SISANATLTV 74 (75)
T ss_pred CEeEeeccccc---CCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCC-EEEeeEEEEE
Confidence 36889999 99 9999999987532111 11 35789999999999999999999999 5777777776
No 75
>KOG4222|consensus
Probab=99.34 E-value=7.6e-12 Score=92.20 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=97.9
Q ss_pred CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCC
Q psy11131 9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGP 85 (150)
Q Consensus 9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~ 85 (150)
-.|+.+.. .+|.|.+++..|.|.|.|.+.|..|...+...|+|+++|.+...+....+..|..+.|.|... .| .
T Consensus 268 ~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP---~ 344 (1281)
T KOG4222|consen 268 RSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNP---P 344 (1281)
T ss_pred ccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCC---C
Confidence 34555444 789999999999999999999999999999999999999988888878888899999999999 99 9
Q ss_pred cEEEEeecCcccCCC------c--c-----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 86 YLIAWFKDGRQIPGR------T--S-----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 86 ~~~~w~~~~~~~~~~------~--~-----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
|.+.|.+.+...-.. . + ...|.+.++...|.|.|.|...+..+
T Consensus 345 PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ 400 (1281)
T KOG4222|consen 345 PAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAG 400 (1281)
T ss_pred cceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccc
Confidence 999998876531111 0 1 45899999999999999999776665
No 76
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.34 E-value=5.3e-11 Score=66.30 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=56.8
Q ss_pred CCCcEEEecCCcEEEEEEec-CCCCCCc-EEEEeecCcccCCCc--c------------eeeEEEccCCCCC-CceEEEE
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PYDSGPY-LIAWFKDGRQIPGRT--S------------STSLVINPVGRED-RGIYQCI 122 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~-~~~w~~~~~~~~~~~--~------------~~~l~~~~~~~~~-~g~y~C~ 122 (150)
.+....+.+|+.+.|.|.+. .| .| .+.|.+++..+.... + .+.|.|.++..+| .|.|.|.
T Consensus 7 ~~~~~~~~~G~~v~L~C~~~g~P---~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~ 83 (98)
T cd05758 7 SEATQYAILGDKGRVECFIFSTP---PPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCT 83 (98)
T ss_pred CCCcEEEeCCCcEEEEEEEcccC---CCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEE
Confidence 34556688999999999999 88 88 699999887665321 1 1479999999844 8999999
Q ss_pred EEeCCCCceeeeEEE
Q psy11131 123 ARRSDGDVAQGSAEL 137 (150)
Q Consensus 123 ~~~~~g~~~~~~~~l 137 (150)
|.|..| .....+.|
T Consensus 84 A~N~~G-~~~~~~~L 97 (98)
T cd05758 84 AWNSFG-SGTAIISL 97 (98)
T ss_pred EEcCCC-cccEEEEe
Confidence 999999 45555443
No 77
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.33 E-value=2.4e-11 Score=65.15 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=49.7
Q ss_pred EEEEec-CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 74 FQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 74 l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|.|.|.|.|.|..| ..+.++.+
T Consensus 3 i~~~v~G~P---~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G-~~~~~~~~ 78 (81)
T cd04971 3 IPFTVRGNP---KPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYG-QDSKSISA 78 (81)
T ss_pred EEEEeEeeC---CCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCC-CeeeEEEe
Confidence 678888 99 999999999987764431 23699999999999999999999999 56666555
Q ss_pred E
Q psy11131 138 Q 138 (150)
Q Consensus 138 ~ 138 (150)
.
T Consensus 79 ~ 79 (81)
T cd04971 79 H 79 (81)
T ss_pred e
Confidence 3
No 78
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.33 E-value=2.2e-11 Score=66.76 Aligned_cols=67 Identities=27% Similarity=0.427 Sum_probs=52.2
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecC----cccCCC-------------c----ceeeEEEccCCCCCCceEEEEEEeC
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDG----RQIPGR-------------T----SSTSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~----~~~~~~-------------~----~~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
|+.+.|.|.+. .| .|.+.|++++ ..+... . ....|.|.++..+|+|.|.|.|.|.
T Consensus 1 G~~v~l~C~v~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd04974 1 GSDVEFHCKVYSDA---QPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNS 77 (90)
T ss_pred CCcEEEEEEEeCCC---CCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecc
Confidence 67899999999 99 9999999853 211100 0 0246889999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy11131 127 DGDVAQGSAELQL 139 (150)
Q Consensus 127 ~g~~~~~~~~l~v 139 (150)
.| ....++.|.|
T Consensus 78 ~G-~~~~sa~L~V 89 (90)
T cd04974 78 IG-PSHHSAWLTV 89 (90)
T ss_pred cC-cccCCEEEEe
Confidence 99 5777887776
No 79
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.32 E-value=2.6e-11 Score=64.36 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=53.1
Q ss_pred EEEEEec-CCCCCCcEEEEeecCcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEc
Q psy11131 73 NFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 140 (150)
Q Consensus 73 ~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~ 140 (150)
.|.|.+. .| .|.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..| ....++.|.|.
T Consensus 2 ~L~C~v~g~P---~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIP---LPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG-VDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecC---CCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCC-CcceEEEEEEE
Confidence 5889999 99 999999999877653321 35799999999999999999999999 57788888774
No 80
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.32 E-value=4e-11 Score=64.91 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=53.0
Q ss_pred CCcEEEEEEec-C--CCCCCcEEEEeecCcccCCC-------------cceeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131 69 DGSANFQCEIT-P--YDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 69 g~~~~l~C~~~-~--p~~~~~~~~w~~~~~~~~~~-------------~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~ 132 (150)
|+.+.|.|.+. . | .+.+.|.+.+..+... ...+.|.|.++...|+|.|.|.+.|..+ ..+
T Consensus 1 Ge~~~L~C~~~g~~~~---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~-~~~ 76 (84)
T cd05742 1 GETLVLNCTVLTELNE---GVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTM-DQK 76 (84)
T ss_pred CCeEEEEEEEEeCCCc---cEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCC-ceE
Confidence 67899999999 7 7 8999998765433211 0146899999999999999999999988 566
Q ss_pred eeEEEEE
Q psy11131 133 GSAELQL 139 (150)
Q Consensus 133 ~~~~l~v 139 (150)
.+..+.|
T Consensus 77 ~s~~v~v 83 (84)
T cd05742 77 ESTKVNI 83 (84)
T ss_pred EEEEEEE
Confidence 7777665
No 81
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.31 E-value=3.2e-11 Score=66.52 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=56.5
Q ss_pred cEEEecCCcEEEEEEec-C-----CCCCCcEEEEeecCcccCCC----cc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 63 LLSVHLDGSANFQCEIT-P-----YDSGPYLIAWFKDGRQIPGR----TS----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~-----p~~~~~~~~w~~~~~~~~~~----~~----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
...+.+|+.+.|.|.+. . | .+.+.|++++..+... .+ ...|.|.++..+|+|.|.|.+.|..|
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p---~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSP---GLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCC---CceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 34567899999999887 4 5 7899999988653321 11 45789999999999999999999988
Q ss_pred CceeeeEEEEE
Q psy11131 129 DVAQGSAELQL 139 (150)
Q Consensus 129 ~~~~~~~~l~v 139 (150)
..+..+.|.|
T Consensus 85 -~~~~~~~L~v 94 (94)
T cd05756 85 -CMKVSISLTV 94 (94)
T ss_pred -cEEEEEEEEC
Confidence 5666666653
No 82
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.31 E-value=2.8e-11 Score=66.33 Aligned_cols=67 Identities=28% Similarity=0.452 Sum_probs=52.6
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeec----CcccCCCcc-----------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKD----GRQIPGRTS-----------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~----~~~~~~~~~-----------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
|+.+.|.|.+. .| .|.+.|++. +..+..... ...|.|.++..+|.|.|.|.+.|.
T Consensus 1 G~~v~L~C~~~g~P---~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 77 (90)
T cd05858 1 GSTVEFVCKVYSDA---QPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNS 77 (90)
T ss_pred CCeEEEEEEEecCC---CCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeC
Confidence 67899999999 99 999999974 222211100 247999999999999999999999
Q ss_pred CCCceeeeEEEEE
Q psy11131 127 DGDVAQGSAELQL 139 (150)
Q Consensus 127 ~g~~~~~~~~l~v 139 (150)
.| ....++.|.|
T Consensus 78 ~G-~~~~~a~L~V 89 (90)
T cd05858 78 IG-ISHHSAWLTV 89 (90)
T ss_pred CC-cccceEEEEE
Confidence 99 5777777776
No 83
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.30 E-value=2e-11 Score=64.98 Aligned_cols=63 Identities=25% Similarity=0.474 Sum_probs=47.4
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCc--c------eeeEEEccCCC----CCCceEEEEEEeCCCCceeeeEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S------STSLVINPVGR----EDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~------~~~l~~~~~~~----~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+.|.|.+. .| .|.+.|++++..+.... . ...|.|..+.. +|.|.|.|.|.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P---~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNP---PPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccC---CCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 46899999 99 99999999987764321 1 46788877643 689999999999999545554443
No 84
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.30 E-value=9.6e-11 Score=63.54 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=57.8
Q ss_pred CCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131 60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--STSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~ 135 (150)
.|....+.+|+.+.|.|.+. .| .+.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..| .....+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~---~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g-~~~~~~ 82 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSP---AYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLD-TDEATA 82 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCC---CcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCC-eEeEEE
Confidence 45566788999999999986 56 889999998765432221 56899999999999999999999988 455554
Q ss_pred EE
Q psy11131 136 EL 137 (150)
Q Consensus 136 ~l 137 (150)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 43
No 85
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.29 E-value=3.8e-11 Score=63.84 Aligned_cols=63 Identities=27% Similarity=0.507 Sum_probs=46.1
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCc--c------eeeEEEccCCC----CCCceEEEEEEeCCCCceeeeEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S------STSLVINPVGR----EDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~------~~~l~~~~~~~----~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+.|.|.+. .| .|.+.|++++..+.... . ...|.|..+.. .|.|.|.|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a~G~P---~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKP---PPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccC---CCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 46899999 99 99999999987653211 1 45677776654 368999999999999544544443
No 86
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.28 E-value=4.8e-11 Score=64.08 Aligned_cols=67 Identities=30% Similarity=0.549 Sum_probs=51.6
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCc--c---cCCCc---c-----eeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGR--Q---IPGRT---S-----STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~--~---~~~~~---~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
|+.+.|.|.+. .| .|.+.|+++.. . +.... . ...|.|.++..+|.|.|.|.+.|..| .....
T Consensus 1 G~~v~l~C~~~g~P---~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRP---PPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGG-LLRAN 76 (81)
T ss_pred CCcEEEEeeccccC---CCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCc-eEEEE
Confidence 67899999999 99 99999998632 1 11111 0 35799999999999999999999999 56666
Q ss_pred EEEEE
Q psy11131 135 AELQL 139 (150)
Q Consensus 135 ~~l~v 139 (150)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 66653
No 87
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.27 E-value=1.1e-10 Score=64.07 Aligned_cols=60 Identities=28% Similarity=0.555 Sum_probs=47.5
Q ss_pred cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c----eeeEEEccCC-CCCCceEEEEEEeCCCCc
Q psy11131 68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S----STSLVINPVG-REDRGIYQCIARRSDGDV 130 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~----~~~l~~~~~~-~~~~g~y~C~~~~~~g~~ 130 (150)
.+..+.|.|.+. .| .+.+.|++++..+.... . ...|.|.++. .+|.|.|.|.+.|..|..
T Consensus 18 ~~~~~~l~C~~~g~p---~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~ 85 (91)
T cd04967 18 DEGKVSLNCRARGSP---PPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTV 85 (91)
T ss_pred CCCEEEEEEeeeEcC---CCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEE
Confidence 345799999999 99 99999999988763221 1 4577887776 489999999999999943
No 88
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.27 E-value=1.3e-10 Score=63.58 Aligned_cols=77 Identities=17% Similarity=0.320 Sum_probs=58.9
Q ss_pred CCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCc----c----eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT----S----STSLVINPVGREDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~----~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~ 132 (150)
+....+.+|+.+.|.|....| .+.+.|++++..+.... . ...|.|.++..+|.|.|.|.+.+..+....
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~p---~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKSN---LASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred ceEEEEECCCcEEEEEeCCCC---CceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 344567889999999997766 77899999887654431 1 356889999999999999999977654556
Q ss_pred eeEEEEEc
Q psy11131 133 GSAELQLG 140 (150)
Q Consensus 133 ~~~~l~v~ 140 (150)
.++.|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 66666664
No 89
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.27 E-value=4.5e-11 Score=62.46 Aligned_cols=53 Identities=28% Similarity=0.378 Sum_probs=45.0
Q ss_pred EEEEEec-CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 73 NFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 73 ~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
.|.|.+. .| .|.+.|++++..+..... ...|.|.++..+|+|.|+|.+.+...
T Consensus 2 ~l~c~v~g~P---~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 2 RLTPKVKAFP---APEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred eEEeeEEEcC---CCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence 5889999 99 999999999987654321 45799999999999999999999855
No 90
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=1.8e-10 Score=62.37 Aligned_cols=64 Identities=22% Similarity=0.460 Sum_probs=53.0
Q ss_pred CCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
.|....+..|+++.|.|.+..+ .+.+.|.+++..+..... ...|.|.++...|+|.|.|.+...
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~~---~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKSN---LARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCCC---CCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 3556778899999999997655 678999999988765421 467999999999999999999865
No 91
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.25 E-value=8.5e-11 Score=62.47 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=46.0
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCC--Ccc------eeeEEEccCC----CCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPG--RTS------STSLVINPVG----REDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~--~~~------~~~l~~~~~~----~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+.|.|.+. .| .|.+.|++++..+.. ... ...|.|..+. .+|.|.|.|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P---~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNP---VPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccC---CCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 46899999 99 999999999875421 111 4577877653 2468999999999999655555443
No 92
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.25 E-value=2.4e-10 Score=61.81 Aligned_cols=71 Identities=21% Similarity=0.433 Sum_probs=56.2
Q ss_pred EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcc---------eeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131 64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQG 133 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~---------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~ 133 (150)
..+..|+.+.|.|.+. .| .+.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..| ....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p---~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g-~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNP---RPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG-SINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCC---CCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCc-eEEE
Confidence 3456799999999999 88 899999998876543211 34688889999999999999999988 4666
Q ss_pred eEEEE
Q psy11131 134 SAELQ 138 (150)
Q Consensus 134 ~~~l~ 138 (150)
++.|.
T Consensus 80 ~~~l~ 84 (85)
T cd05729 80 TYKVD 84 (85)
T ss_pred EEEEe
Confidence 66654
No 93
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.25 E-value=5e-10 Score=61.95 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=56.5
Q ss_pred eCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc--c------------eeeEEEccCCCCC-CceEEEE
Q psy11131 59 VNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT--S------------STSLVINPVGRED-RGIYQCI 122 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~--~------------~~~l~~~~~~~~~-~g~y~C~ 122 (150)
.......+.+|+.+.|.|.+. .|. +..+.|.+++..+.... + .+.|.|.++...| .|.|.|.
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~--P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~ 83 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPP--PDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCT 83 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCC--CcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEE
Confidence 445567788999999999997 661 55778988766554321 1 5789999997766 7899999
Q ss_pred EEeCCCCceeeeEEE
Q psy11131 123 ARRSDGDVAQGSAEL 137 (150)
Q Consensus 123 ~~~~~g~~~~~~~~l 137 (150)
|.|.+| .....+.|
T Consensus 84 a~N~~G-~d~~~i~L 97 (98)
T cd05898 84 AWNSFG-SGTAIIQL 97 (98)
T ss_pred EEeCCc-cceEEEEe
Confidence 999999 45555544
No 94
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.25 E-value=7.4e-11 Score=63.08 Aligned_cols=65 Identities=26% Similarity=0.326 Sum_probs=49.6
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccC--------CCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIP--------GRTS-----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+.|.|.+. .| .|.+.|++.+.... ...+ ...|.|..+..+|.|.|.|.+.|..|...++.+.|
T Consensus 1 v~l~C~~~G~P---~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l 77 (79)
T cd05734 1 VTLNCSAEGYP---PPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL 77 (79)
T ss_pred CEeEeeCeEeC---CCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence 46899999 99 99999998643211 0111 46799999999999999999999999655777666
Q ss_pred EE
Q psy11131 138 QL 139 (150)
Q Consensus 138 ~v 139 (150)
.|
T Consensus 78 ~~ 79 (79)
T cd05734 78 TV 79 (79)
T ss_pred eC
Confidence 53
No 95
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.23 E-value=4.4e-10 Score=60.74 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=52.2
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCCC----------c--ceeeEEEccCCCCCCceEEEEEEeCCC-Cceeee
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGR----------T--SSTSLVINPVGREDRGIYQCIARRSDG-DVAQGS 134 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~----------~--~~~~l~~~~~~~~~~g~y~C~~~~~~g-~~~~~~ 134 (150)
|+.+.|.|.+. .| .+.+.|.+.+...... . ....|.|.+++.+|+|.|.|.+.|..+ ...+.+
T Consensus 1 Ge~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~s 77 (84)
T cd05861 1 GETITVNCIVQGNE---VVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKK 77 (84)
T ss_pred CCcEEEEEEEECCC---ccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEE
Confidence 67899999999 88 8999998765422110 0 146899999999999999999998754 235666
Q ss_pred EEEEEc
Q psy11131 135 AELQLG 140 (150)
Q Consensus 135 ~~l~v~ 140 (150)
+.+.|.
T Consensus 78 v~i~V~ 83 (84)
T cd05861 78 VNITVH 83 (84)
T ss_pred EEEEEe
Confidence 777664
No 96
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.20 E-value=2.1e-10 Score=60.63 Aligned_cols=60 Identities=28% Similarity=0.520 Sum_probs=47.1
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeE
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~ 135 (150)
+.|.|.+. .| .+.+.|++++..+..... ...|.|..+..+|.|.|.|.+.|..| ....++
T Consensus 1 ~~l~C~~~g~~P---~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G-~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYP---SLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG-NDTVTA 73 (75)
T ss_pred CEEEEEccCCCC---CceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCC-ceeEEE
Confidence 36889987 57 899999999876643221 35789999999999999999999999 444443
No 97
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.20 E-value=2e-10 Score=60.89 Aligned_cols=59 Identities=25% Similarity=0.512 Sum_probs=46.3
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCCCCceeee
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~ 134 (150)
+.|.|.+. .| .+.+.|++++..+.... ....|.|.++..+|+|.|.|.+.|..| ....+
T Consensus 1 ~~L~C~a~~~~p---~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g-~~~~~ 73 (76)
T cd05895 1 LVLRCETVSEYP---SLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLG-NDSVT 73 (76)
T ss_pred CEEEEecccCCC---CCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCC-ceeEE
Confidence 46899976 46 78999999988774321 036799999999999999999999998 44444
No 98
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.19 E-value=3.3e-10 Score=62.19 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=51.4
Q ss_pred EEEecCCcEEEEEEec-C-----CCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 64 LSVHLDGSANFQCEIT-P-----YDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~-----p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
..+.+|+...|.|... . | .|.+.|++++..+..... ...|.|.++..+|+|.|+|.+.+..+
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~---~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~ 76 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENT---LPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHN 76 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCC---CCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence 4567899999999875 2 4 789999999988765432 47899999999999999999998876
No 99
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.13 E-value=1.7e-09 Score=59.73 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=52.8
Q ss_pred CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc---------CCCc--------ceeeEEEccCCCCCCceEEEEE
Q psy11131 62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI---------PGRT--------SSTSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~---------~~~~--------~~~~l~~~~~~~~~~g~y~C~~ 123 (150)
....+.+|+++.|.|.+. .| .+.+.|.+.+..+ .... ....|.|.++..+|.|.|.|.+
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~---~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHD---NSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCC---CCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence 346788999999999999 88 8999998865422 0011 0358999999999999999999
Q ss_pred EeCCCCceeeeEEEE
Q psy11131 124 RRSDGDVAQGSAELQ 138 (150)
Q Consensus 124 ~~~~g~~~~~~~~l~ 138 (150)
.... .....+.+.
T Consensus 82 ~t~~--~~~~~~~~~ 94 (95)
T cd05882 82 FTMP--VRTAKATVT 94 (95)
T ss_pred Eeec--cccEEEEEE
Confidence 8733 234444443
No 100
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.13 E-value=6.1e-10 Score=59.43 Aligned_cols=71 Identities=28% Similarity=0.529 Sum_probs=55.9
Q ss_pred EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
..+.+|+.+.|.|.+. .| ...+.|.+++..+.... ..+.+..+..+|.|.|.|.+.+..+...+.++.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p---~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNP---PPQVQWYKNGSPINSSQ--NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSS---SSEEEEEETTEEEEEES--SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEccc---ceeeeeeeeeeeeeeee--eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 4578899999999999 88 88999999887665322 237778888999999999999876645666666654
No 101
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.10 E-value=8e-10 Score=60.74 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=51.4
Q ss_pred cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc--CCCcc------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI--PGRTS------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~--~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
...+.+|+.+.|.|... .| .+.+.|.+++..+ ..+.+ ...|.|.+++..|.|.|.|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P---~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYP---DLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCC---CCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 35678899999999887 78 8999999987643 11221 57899999999999999999999765
No 102
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.08 E-value=4e-10 Score=60.75 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=36.8
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 55 (150)
++|.|.|++.+|+|.|+|.+.+..+..++.+.|.|..||
T Consensus 47 ~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 47 GDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 689999999999999999999999999999999999775
No 103
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.08 E-value=3.9e-09 Score=58.36 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=52.5
Q ss_pred CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--------cc-cCCCc--------ceeeEEEccCCCCCCceEEEEE
Q psy11131 62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--------RQ-IPGRT--------SSTSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--------~~-~~~~~--------~~~~l~~~~~~~~~~g~y~C~~ 123 (150)
....+.+|+++.|.|.+. .| .+.+.|++.+ .. ..... ....|.|.++..+|+|.|.|.+
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p---~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQND---NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ceEEEecCCcEEEEEEEecCC---ceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 446788999999999999 88 8999997521 11 11111 1357899999999999999999
Q ss_pred EeCCCCceeeeEEEEE
Q psy11131 124 RRSDGDVAQGSAELQL 139 (150)
Q Consensus 124 ~~~~g~~~~~~~~l~v 139 (150)
.+..+ .+.++.|.|
T Consensus 82 ~t~~~--~~~~~~l~v 95 (95)
T cd07701 82 FTMPV--KTSKAYLTV 95 (95)
T ss_pred EeecC--ccEEEEEEC
Confidence 97543 355555543
No 104
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.07 E-value=1.6e-09 Score=54.83 Aligned_cols=58 Identities=34% Similarity=0.630 Sum_probs=46.8
Q ss_pred cCCcEEEEEEec-CCCCCCcEEEEeecCcccCCCc----ceeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
+|+.+.|.|... .+ .+.+.|++++..+.... ....|.|.++...|.|.|.|.+.+..|
T Consensus 1 ~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDP---VPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCC---CCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999977 77 88999999887665211 156899999999999999999987654
No 105
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.05 E-value=6.8e-09 Score=56.90 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=53.4
Q ss_pred EEEecCCcEEEEEEecCCCCCCcEEEEeecCc--ccC----CCcc----eeeEEEccCCCCCCceEEEEEEe-CCCCcee
Q psy11131 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QIP----GRTS----STSLVINPVGREDRGIYQCIARR-SDGDVAQ 132 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~~----~~~~----~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~ 132 (150)
+...+|+.+.|.|....| .+.+.|++.+. ... .... ...|.|..+..+|+|.|.|.+.+ ..+ ...
T Consensus 6 ~~~~eG~~v~L~C~~~~p---~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~-~~~ 81 (91)
T cd05871 6 VYGVENNSTFLECLPKSP---QASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFS-QTL 81 (91)
T ss_pred EEEecCCcEEEEEECCCC---CceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCe-EEE
Confidence 456789999999985577 78999997432 111 1111 45799999999999999999984 555 455
Q ss_pred eeEEEEEcC
Q psy11131 133 GSAELQLGG 141 (150)
Q Consensus 133 ~~~~l~v~~ 141 (150)
..+.|.|..
T Consensus 82 ~~~~l~v~~ 90 (91)
T cd05871 82 AKYTLHVIE 90 (91)
T ss_pred EEEEEEEec
Confidence 677777653
No 106
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.04 E-value=1e-09 Score=57.67 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=40.2
Q ss_pred ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
++..+.|+.+.. ++|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 26 ~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 26 LLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred ecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 345567887755 89999999999999999999999999888888764
No 107
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.02 E-value=1.4e-08 Score=56.07 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=59.9
Q ss_pred CcEEEecCCcEEEEEEec-CCCCCCcE-EEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 62 PLLSVHLDGSANFQCEIT-PYDSGPYL-IAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~-~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
....+.+|+.+.|.|.+. +| .|. +.|.+++..+..... .+.|.+.++..++.|.|+|.+.|.
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP---~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~ 87 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYP---KPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNS 87 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCC---CCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECC
Confidence 346788999999999999 99 887 999877553321110 478999999999999999999999
Q ss_pred CCCceeeeEEEEEc
Q psy11131 127 DGDVAQGSAELQLG 140 (150)
Q Consensus 127 ~g~~~~~~~~l~v~ 140 (150)
.. ..+.++.|.|.
T Consensus 88 ~~-~~s~tF~l~v~ 100 (101)
T cd05860 88 DA-SASVTFNVYVN 100 (101)
T ss_pred CC-eEEEEEEEEEe
Confidence 88 67788888764
No 108
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.98 E-value=1.1e-08 Score=55.56 Aligned_cols=70 Identities=20% Similarity=0.298 Sum_probs=50.7
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCC----C----------cceeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG----R----------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQG 133 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~----~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~ 133 (150)
|+.+.|.|.+. .+.. ...+.|...+..... . ...+.|.|.++...|.|.|.|.+.|..+ ....
T Consensus 1 Ge~~~L~C~~~~~~~~-~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~-~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNV-GIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQM-IAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCC-cEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecce-Eecc
Confidence 67899999997 4410 467899775542211 1 0156899999999999999999999887 5666
Q ss_pred eEEEEEc
Q psy11131 134 SAELQLG 140 (150)
Q Consensus 134 ~~~l~v~ 140 (150)
...|.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 6666664
No 109
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.98 E-value=2.7e-09 Score=54.59 Aligned_cols=52 Identities=31% Similarity=0.767 Sum_probs=41.8
Q ss_pred CCcEEEEEEe-c-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEE
Q psy11131 69 DGSANFQCEI-T-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 69 g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~ 123 (150)
|+.+.|.|.+ . .+ ...+.|.+++........ ...|.|.++..+|+|.|.|.|
T Consensus 1 G~~v~L~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPP---PTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSS---TSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCC---CcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 5 77 899999998876543322 112999999999999999986
No 110
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=98.97 E-value=3.7e-09 Score=58.80 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=43.2
Q ss_pred ecCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131 5 LVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55 (150)
Q Consensus 5 ~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 55 (150)
++..+.++.+.. +.|.|.++..+|+|.|+|.+.|..|...+.+.|.|.+.|
T Consensus 40 ~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 40 QIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred EecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 344556666652 779999999999999999999999999999999999765
No 111
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.97 E-value=1.4e-08 Score=55.65 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=56.7
Q ss_pred eEEeCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC-----cceeeEEEccCCCCCCceEEEEEEeCC-C-
Q psy11131 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRSD-G- 128 (150)
Q Consensus 56 ~~~~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~-g- 128 (150)
.+...|. ..+..|+.+.|.|....+ ...+.|++++...... .....+.|.++..+|+|.|.|.+.+.. +
T Consensus 4 ~L~a~p~-~vV~~G~~VtL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~ 79 (91)
T cd05751 4 SLWAEPS-SVVPLGKPVTLRCQGPYG---AVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALW 79 (91)
T ss_pred EEEecCC-CccCCCCcEEEEEecCCC---CCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCcc
Confidence 3333333 357799999999988755 6789999887653321 115679999999999999999998752 2
Q ss_pred CceeeeEEEEE
Q psy11131 129 DVAQGSAELQL 139 (150)
Q Consensus 129 ~~~~~~~~l~v 139 (150)
...+..+.|.|
T Consensus 80 S~~Sd~lel~V 90 (91)
T cd05751 80 SEPSDPLELVV 90 (91)
T ss_pred CCCCCcEEEEe
Confidence 23455566655
No 112
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.96 E-value=2.1e-09 Score=58.19 Aligned_cols=39 Identities=28% Similarity=0.419 Sum_probs=36.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 55 (150)
++|.|.+++..|+|.|+|.+.|..|..++.+.|.|..+|
T Consensus 47 ~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 47 GDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred eEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 789999999999999999999999999999999998764
No 113
>smart00409 IG Immunoglobulin.
Probab=98.96 E-value=4.9e-08 Score=52.25 Aligned_cols=73 Identities=29% Similarity=0.587 Sum_probs=55.6
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~ 132 (150)
...+..|+.+.|.|.+. .+ .+.+.|.++ +..+..... ...|.+.++...|.|.|.|.+.+..+ ...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~-~~~ 78 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG-SAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC-eEE
Confidence 34567899999999999 76 889999987 555532221 36799999999999999999997776 344
Q ss_pred eeEEEEE
Q psy11131 133 GSAELQL 139 (150)
Q Consensus 133 ~~~~l~v 139 (150)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00409 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 4466654
No 114
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.96 E-value=4.9e-08 Score=52.25 Aligned_cols=73 Identities=29% Similarity=0.587 Sum_probs=55.6
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeec-CcccCCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCCcee
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD-GRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDVAQ 132 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~-~~~~~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~ 132 (150)
...+..|+.+.|.|.+. .+ .+.+.|.++ +..+..... ...|.+.++...|.|.|.|.+.+..+ ...
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~-~~~ 78 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSP---PPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG-SAS 78 (86)
T ss_pred cEEEeCCCeEEEEEEEccCC---CCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC-eEE
Confidence 34567899999999999 76 889999987 555532221 36799999999999999999997776 344
Q ss_pred eeEEEEE
Q psy11131 133 GSAELQL 139 (150)
Q Consensus 133 ~~~~l~v 139 (150)
..+.|.|
T Consensus 79 ~~~~l~V 85 (86)
T smart00410 79 STTTLTV 85 (86)
T ss_pred EEEEEEE
Confidence 4466654
No 115
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.94 E-value=1.4e-08 Score=56.21 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=52.1
Q ss_pred cEEEecCCcEEEEEEec-------CC--CCCCcEEEEeecCcccCCCc-------c----eeeEEEccCCCCCCceEEEE
Q psy11131 63 LLSVHLDGSANFQCEIT-------PY--DSGPYLIAWFKDGRQIPGRT-------S----STSLVINPVGREDRGIYQCI 122 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-------~p--~~~~~~~~w~~~~~~~~~~~-------~----~~~l~~~~~~~~~~g~y~C~ 122 (150)
...+.+|+++.|.|... ++ ..-...+.|++++..+.... + ...|.|.++..+|+|.|.|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 35678999999999961 00 10044899999864333211 1 56899999999999999999
Q ss_pred EEeCCCCceeeeEEEE
Q psy11131 123 ARRSDGDVAQGSAELQ 138 (150)
Q Consensus 123 ~~~~~g~~~~~~~~l~ 138 (150)
+.|... .....+.|.
T Consensus 89 ~rN~t~-C~~~~i~l~ 103 (104)
T cd05896 89 LRNSTY-CMKVSMSLT 103 (104)
T ss_pred ECCCCc-ceEEEEEEE
Confidence 998765 444555444
No 116
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.93 E-value=8.5e-09 Score=56.60 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=50.8
Q ss_pred CcEEEecCCcEEEEEEe-c-CCCCCCcEEEEeecCccc-CCCcc-----eeeEEEccCCCCCCc-eEEEEEEeCCC
Q psy11131 62 PLLSVHLDGSANFQCEI-T-PYDSGPYLIAWFKDGRQI-PGRTS-----STSLVINPVGREDRG-IYQCIARRSDG 128 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~-~-~p~~~~~~~~w~~~~~~~-~~~~~-----~~~l~~~~~~~~~~g-~y~C~~~~~~g 128 (150)
....+.+|+.+.|.|.. . .| .|.+.|..++... ....+ ...|.|.++...|.| .|.|.|.+...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P---~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAV---PLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCC---CCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 45678899999999975 5 88 9999999765432 22222 579999999999999 79999998764
No 117
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.93 E-value=2e-08 Score=53.35 Aligned_cols=54 Identities=19% Similarity=0.398 Sum_probs=44.8
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
++|.|... .| ++.+.|++++..+..... .+.|.|.....+|.+.|.|.+.|..+
T Consensus 2 ~~L~C~s~~skP---~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~ 67 (80)
T cd05885 2 VELTCLSPRSKP---AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPAL 67 (80)
T ss_pred EEEEEeCCCccC---CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhh
Confidence 68999998 88 999999999987754221 35788888888899999999999876
No 118
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.90 E-value=1.8e-08 Score=55.37 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=49.4
Q ss_pred EEEecCCcEEEEEEec--C-CCCCCcEEEEeecCcccCCCcc-------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 64 LSVHLDGSANFQCEIT--P-YDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~--~-p~~~~~~~~w~~~~~~~~~~~~-------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
..+.+|....|.|+-. . .....+.+.|++++..+..... ...|.|.++..+|+|.|+|.+.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 3456788899999852 2 1112679999999988764321 35799999999999999999998765
No 119
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.90 E-value=3.9e-09 Score=57.17 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=36.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 55 (150)
++|.|.+++..|+|.|+|.+.|..|..++.+.|.|.++|
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 47 GDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred ceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 789999999999999999999999999999999998764
No 120
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.90 E-value=9e-09 Score=54.09 Aligned_cols=47 Identities=32% Similarity=0.424 Sum_probs=39.1
Q ss_pred ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
++..+.++.+.. ++|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 26 ~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 26 LLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 344556666655 78999999999999999999999999888888765
No 121
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.88 E-value=1.5e-08 Score=55.71 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=47.2
Q ss_pred EEEecCCcEEEEEEec-CCCCCCcEEEEeecCcccC--------------CCcc-----------eeeEEEccCCCCCCc
Q psy11131 64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIP--------------GRTS-----------STSLVINPVGREDRG 117 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~--------------~~~~-----------~~~l~~~~~~~~~~g 117 (150)
+.+.+|+.+.|.|... .+ .+.+.|++++.... ...+ ...|.|.++..+|+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~---~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsg 78 (94)
T cd07690 2 VLGKKGDTAELPCTASQKK---SIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSD 78 (94)
T ss_pred eEeeCCCCEEEEEEeCCCC---CcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCE
Confidence 3567899999999998 88 89999985442110 0000 356999999999999
Q ss_pred eEEEEEEeCCC
Q psy11131 118 IYQCIARRSDG 128 (150)
Q Consensus 118 ~y~C~~~~~~g 128 (150)
.|.|.+.+..+
T Consensus 79 tY~C~v~~~~~ 89 (94)
T cd07690 79 TYICEVEDKKE 89 (94)
T ss_pred EEEEEECCccc
Confidence 99999997665
No 122
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.88 E-value=1.2e-08 Score=53.30 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=37.7
Q ss_pred cCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 6 VLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 6 ~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.++.++.+.. +.|.|.++..+|+|.|+|.+.|..|...+.+.|.|
T Consensus 25 ~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 25 VIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 34455666544 78999999999999999999999999888888764
No 123
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.88 E-value=6.4e-09 Score=56.68 Aligned_cols=39 Identities=33% Similarity=0.472 Sum_probs=36.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 55 (150)
++|.|.++..+|+|.|+|.+.|..|.....+.|.|.++|
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P 85 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPP 85 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCC
Confidence 579999999999999999999999999999999998764
No 124
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.86 E-value=1.3e-08 Score=53.73 Aligned_cols=43 Identities=35% Similarity=0.449 Sum_probs=36.3
Q ss_pred CCceEEeC---C--eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 9 GPRTRVLG---P--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 9 ~~~~~~~~---~--~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|+.+.. + +|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 28 ~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 28 TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 35666542 2 7999999999999999999999999999888875
No 125
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.86 E-value=1e-08 Score=54.06 Aligned_cols=44 Identities=34% Similarity=0.494 Sum_probs=36.1
Q ss_pred CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.+.++.... ++|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 30 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 30 VDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 344444433 78999999999999999999999999888888765
No 126
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.86 E-value=1.2e-08 Score=55.66 Aligned_cols=45 Identities=31% Similarity=0.583 Sum_probs=37.6
Q ss_pred CCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
.+.++...++.|.|.++..+|+|.|+|.+.|..|.....+.|.|+
T Consensus 44 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 44 ATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred CCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 344555555789999999999999999999999998888888774
No 127
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.86 E-value=1.4e-08 Score=55.60 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131 8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54 (150)
Q Consensus 8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~ 54 (150)
...|+.+.. +.|.|.++..+|+|.|+|.+.|..|.....+.|.|.+.
T Consensus 37 ~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 37 SSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred CCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeec
Confidence 345677654 78999999999999999999999999999999999864
No 128
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.85 E-value=1.5e-08 Score=52.90 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=36.7
Q ss_pred cCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 6 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+..+.++....++|.|.++..+|+|.|+|.+.|..|.......+.|
T Consensus 24 l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 24 ISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 3444555555588999999999999999999999888777766655
No 129
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.84 E-value=1.1e-07 Score=52.61 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=47.1
Q ss_pred CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc---------cCCCc--------ceeeEEEccCCCCCCceEEEEE
Q psy11131 62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ---------IPGRT--------SSTSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~---------~~~~~--------~~~~l~~~~~~~~~~g~y~C~~ 123 (150)
....+.+|+.+.|.|.+. .+ .+.+.|++.+.. ..... ....|.|.++..+|+|.|.|.+
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~---~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNND---NSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCC---CceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence 456788999999999998 77 789999742111 11010 1357899999999999999999
Q ss_pred EeCCC
Q psy11131 124 RRSDG 128 (150)
Q Consensus 124 ~~~~g 128 (150)
.+...
T Consensus 82 ~~~~~ 86 (95)
T cd05717 82 YTMPV 86 (95)
T ss_pred ecCCC
Confidence 86543
No 130
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.83 E-value=6.9e-08 Score=51.99 Aligned_cols=59 Identities=19% Similarity=0.375 Sum_probs=48.2
Q ss_pred cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcc----eeeEEEccCCCCCCceEEEEEE
Q psy11131 63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIAR 124 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~----~~~l~~~~~~~~~~g~y~C~~~ 124 (150)
...+..|..+.|.|....+ ...+.|.+++..+..+.+ ...|.|..+...|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~---~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN---LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCCCCC---CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 3567889999999988744 679999999987765433 4567788999999999999987
No 131
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.83 E-value=2.5e-08 Score=52.84 Aligned_cols=42 Identities=29% Similarity=0.524 Sum_probs=36.9
Q ss_pred CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.++....+.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 34 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 34 PRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred ceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 356655689999999999999999999999999888888876
No 132
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.82 E-value=2.3e-08 Score=51.93 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=36.8
Q ss_pred ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131 5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 49 (150)
++..+.++.+.. +.|.|.++..+|+|.|+|.+.|..|..+..+.|
T Consensus 23 ~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 23 QVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred ECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 344456666654 789999999999999999999999988877765
No 133
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.81 E-value=2.1e-08 Score=52.10 Aligned_cols=42 Identities=38% Similarity=0.621 Sum_probs=35.0
Q ss_pred CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.++.... +.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 27 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 27 GRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4444444 78999999999999999999999998888877764
No 134
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.81 E-value=3.1e-08 Score=52.17 Aligned_cols=46 Identities=26% Similarity=0.391 Sum_probs=36.9
Q ss_pred cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+..+.++.+.. ..|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 25 l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 25 LKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred cCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 33445555532 57999999999999999999999999888887764
No 135
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.80 E-value=2.3e-08 Score=53.36 Aligned_cols=47 Identities=30% Similarity=0.459 Sum_probs=37.9
Q ss_pred ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
++..+.++.+.+..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 33 ~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 33 QLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred CCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 44555677777788999999999999999999998887776666553
No 136
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.80 E-value=3.2e-08 Score=52.26 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=36.6
Q ss_pred CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
..++.... +.|.|.++..+|+|.|.|.+.|..|..+..+.|.|.
T Consensus 30 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 30 ERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred ccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 34555433 789999999999999999999999998888888773
No 137
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.80 E-value=2.5e-08 Score=52.62 Aligned_cols=43 Identities=35% Similarity=0.472 Sum_probs=36.1
Q ss_pred CCceEEeC-C----eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 9 GPRTRVLG-P----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 9 ~~~~~~~~-~----~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|+.+.. . .|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 28 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 28 TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 35666643 2 6999999999999999999999999998888865
No 138
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.79 E-value=2.6e-08 Score=53.90 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=40.0
Q ss_pred ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
++..+.++....+.|.|.++..+|+|.|+|.+.|..|...+.+.|.|
T Consensus 39 ~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 39 PLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred ECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 44556677777789999999999999999999999999888887764
No 139
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.76 E-value=1.4e-07 Score=52.92 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=51.1
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc--------CCC-----------cc-----eeeEEEccCCCCCCc
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI--------PGR-----------TS-----STSLVINPVGREDRG 117 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~--------~~~-----------~~-----~~~l~~~~~~~~~~g 117 (150)
...+.+|+.+.|.|... .. ...+.|++..... ... .+ +.+|.|.++..+|.|
T Consensus 7 p~~~~~G~~V~L~v~~~p~~---~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPEN---LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred CCcccCCCCEEEEecCCCCC---ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 34577899999999875 54 6689999853211 000 01 468999999999999
Q ss_pred eEEEEEEeCCCCceeeeEEEE
Q psy11131 118 IYQCIARRSDGDVAQGSAELQ 138 (150)
Q Consensus 118 ~y~C~~~~~~g~~~~~~~~l~ 138 (150)
.|.|.+.+.........+.|.
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEE
Confidence 999999987643444455543
No 140
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.73 E-value=1.4e-07 Score=51.73 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=47.5
Q ss_pred CCcEEEEEEec-CCCCCCcEEEEeecCcccCC--------C----------cc-----eeeEEEccCCCCCCceEEEEEE
Q psy11131 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG--------R----------TS-----STSLVINPVGREDRGIYQCIAR 124 (150)
Q Consensus 69 g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~--------~----------~~-----~~~l~~~~~~~~~~g~y~C~~~ 124 (150)
|+.+.|.|... .. ...+.|++....... . .+ ...|.|.++..+|+|.|.|.+.
T Consensus 1 G~~VtL~c~~~~~~---~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~ 77 (92)
T cd05741 1 GESVTLPVSNLPEN---LQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQII 77 (92)
T ss_pred CCcEEEEcccCCCC---CEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEE
Confidence 67899999887 55 778999875422110 0 00 4689999999999999999999
Q ss_pred eCCCCceeeeEEEE
Q psy11131 125 RSDGDVAQGSAELQ 138 (150)
Q Consensus 125 ~~~g~~~~~~~~l~ 138 (150)
...+......+.|.
T Consensus 78 ~~~~~~~~~~~~l~ 91 (92)
T cd05741 78 STNGVTENAKFFLR 91 (92)
T ss_pred cCCCcEEEEEEEEE
Confidence 87664444555443
No 141
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.72 E-value=1.3e-07 Score=60.39 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred CcEEEecCCcEEEEEEec-CCC--------CCCcEEEEeecCccc--C----C--------C---cceeeEEEccCCCCC
Q psy11131 62 PLLSVHLDGSANFQCEIT-PYD--------SGPYLIAWFKDGRQI--P----G--------R---TSSTSLVINPVGRED 115 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~p~--------~~~~~~~w~~~~~~~--~----~--------~---~~~~~l~~~~~~~~~ 115 (150)
....+.+|+++.|.|.+. .|. ...+.+.|.+.+... . . . .+...|.|.++..+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 345678999999999986 441 125689999876431 0 0 0 114589999999999
Q ss_pred CceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 116 RGIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 116 ~g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
+|.|.|.+.|..+ .....+.|.|..
T Consensus 110 sG~Y~C~a~N~~~-~~~~~i~L~V~~ 134 (227)
T PHA02826 110 EGIYICTISSGNI-CEESTIRLTFDS 134 (227)
T ss_pred CEEEEEEEEECCc-ceEEEEEEEEec
Confidence 9999999999776 456667777643
No 142
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.72 E-value=9.3e-08 Score=52.08 Aligned_cols=40 Identities=38% Similarity=0.668 Sum_probs=35.0
Q ss_pred EEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 13 RVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 13 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
....+.|.|.+++.+|+|.|.|.+.|..|.....+.|.|+
T Consensus 49 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 49 SMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred EEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 3345899999999999999999999999998888888774
No 143
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.71 E-value=6.7e-08 Score=50.46 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=32.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 36 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 36 KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 79999999999999999999999999888888776
No 144
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.69 E-value=2.9e-08 Score=54.31 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=33.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
..|.|.+++.+|+|.|+|.+.|..|...+.+.|.|.
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~ 90 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL 90 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence 579999999999999999999999998888888873
No 145
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.69 E-value=9.9e-08 Score=50.19 Aligned_cols=44 Identities=41% Similarity=0.573 Sum_probs=35.1
Q ss_pred CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
...++.... ++|.|.++...|+|.|.|.+.|..|..+..+.|.|
T Consensus 30 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 30 NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 334444333 78999999999999999999999998888777764
No 146
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.69 E-value=6.5e-08 Score=53.80 Aligned_cols=43 Identities=30% Similarity=0.480 Sum_probs=35.5
Q ss_pred CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|+.+.. ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 52 ~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 52 DGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 34666643 57999999999999999999999998887777754
No 147
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.69 E-value=5.5e-08 Score=50.08 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=31.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
+.|.|.++..+|+|.|+|.+.|..|.......|++.
T Consensus 31 ~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 31 HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 689999999999999999999998887777666653
No 148
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.68 E-value=8.4e-08 Score=52.90 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=35.4
Q ss_pred CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.|+...++.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 53 ~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 53 SRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred ceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 455555588999999999999999999999888888777764
No 149
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.66 E-value=4.8e-07 Score=51.01 Aligned_cols=73 Identities=26% Similarity=0.395 Sum_probs=51.5
Q ss_pred cCCcEEEEEEec-CC---CCCCcEEEEeecC---c-c--c----C-------CC----------cceeeEEEccCCCCCC
Q psy11131 68 LDGSANFQCEIT-PY---DSGPYLIAWFKDG---R-Q--I----P-------GR----------TSSTSLVINPVGREDR 116 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p---~~~~~~~~w~~~~---~-~--~----~-------~~----------~~~~~l~~~~~~~~~~ 116 (150)
.|+.+.|.|... .+ ......+.|++.. . . + . .. .....|.|.++...|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 478899999877 43 1125788998752 1 0 0 0 00 0046899999999999
Q ss_pred ceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 117 GIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 117 g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
|.|.|.+.+..+ .....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~-~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIE-DEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCC-ceEEEEEEEEEE
Confidence 999999998766 567888888765
No 150
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.66 E-value=1.5e-07 Score=51.06 Aligned_cols=42 Identities=36% Similarity=0.494 Sum_probs=35.5
Q ss_pred CceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.|+.+.. +.|.|.++..+|+|.|.|.+.|..|...+.+.|.|
T Consensus 41 ~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 41 GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 4665543 57999999999999999999999999888887764
No 151
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.66 E-value=2.1e-07 Score=51.38 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=37.0
Q ss_pred CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.++.... +.|.|.++..+|+|.|+|.+.|..|.....+.|.|.+
T Consensus 49 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 49 EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 4454433 5799999999999999999999999988888888864
No 152
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.65 E-value=1.5e-07 Score=49.81 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=34.7
Q ss_pred EeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 14 VLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 14 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
..++.|.|.++..+|+|.|+|.+.|..|...+.+.|.|.
T Consensus 38 ~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 38 VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 344689999999999999999999999999999988873
No 153
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.64 E-value=8.9e-08 Score=52.99 Aligned_cols=35 Identities=34% Similarity=0.642 Sum_probs=31.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v 51 (150)
++|.|.+++.+|+|.|+|.+.|.. |...+.+.|.|
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 579999999999999999999986 77888888776
No 154
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.63 E-value=2e-07 Score=49.09 Aligned_cols=44 Identities=32% Similarity=0.507 Sum_probs=35.5
Q ss_pred CCCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEE
Q psy11131 8 PGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV 51 (150)
Q Consensus 8 ~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 51 (150)
.+.++.... +.|.|.++..+|+|.|+|.+.|..|.. +..+.|.|
T Consensus 28 ~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 28 SNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 456666655 789999999999999999999998873 56666665
No 155
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.63 E-value=9.3e-08 Score=50.49 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=31.3
Q ss_pred eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 6999999999999999999999999888888764
No 156
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.63 E-value=5.1e-07 Score=50.92 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=50.6
Q ss_pred cCCcEEEEEEec-CC---CCCCcEEEEeecCcc--------cC----------CCcc---------eeeEEEccCCCCCC
Q psy11131 68 LDGSANFQCEIT-PY---DSGPYLIAWFKDGRQ--------IP----------GRTS---------STSLVINPVGREDR 116 (150)
Q Consensus 68 ~g~~~~l~C~~~-~p---~~~~~~~~w~~~~~~--------~~----------~~~~---------~~~l~~~~~~~~~~ 116 (150)
.|+.+.|.|... .| ......+.|++.... +. ...+ ...|.|.++..+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 478899999876 42 011457899874310 00 0001 34799999999999
Q ss_pred ceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 117 GIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 117 g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
|.|.|.+.+..+ .....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~-~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLE-DESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEeccc-ceEEEEEEEEEE
Confidence 999999998877 577778887754
No 157
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.62 E-value=5.7e-07 Score=48.28 Aligned_cols=54 Identities=28% Similarity=0.527 Sum_probs=39.8
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
+.|.|.+. .| .+.+.|++++..+..... .+.|.+.....++.+.|.|.+.+...
T Consensus 2 ~~L~C~v~g~~P---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRARGAKP---AAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEeCccC---CCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 67899997 57 789999999876543211 23566666666778899999998754
No 158
>PHA03376 BARF1; Provisional
Probab=98.62 E-value=2e-07 Score=56.65 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=51.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR 95 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~ 95 (150)
-+|.|.+++.+|.|.|+|.+..........-+|++..+..+...........-+...+.|.+- .| .|.+.|..+..
T Consensus 87 vsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP---~P~~~Wle~~~ 163 (221)
T PHA03376 87 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFP---HPHVQWLMPEG 163 (221)
T ss_pred EEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcC---CchheeccccC
Confidence 578999999999999999998765444455555555443333322111122245678899966 89 99999987654
No 159
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.62 E-value=1.6e-07 Score=50.20 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=32.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 68999999999999999999999999888888765
No 160
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.62 E-value=2.2e-07 Score=51.00 Aligned_cols=47 Identities=30% Similarity=0.516 Sum_probs=35.5
Q ss_pred ecCCCCceEEeC-C---eEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEE
Q psy11131 5 LVLPGPRTRVLG-P---ILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV 51 (150)
Q Consensus 5 ~~~~~~~~~~~~-~---~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 51 (150)
++..+.|+.+.. + .|.|.++..+|+|.|+|.+.|..|.. ...+.|.+
T Consensus 40 ~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 40 KIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 344556776653 3 79999999999999999999998875 44555544
No 161
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.62 E-value=4.8e-08 Score=53.46 Aligned_cols=35 Identities=34% Similarity=0.510 Sum_probs=32.4
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 47999999999999999999999999888888887
No 162
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.61 E-value=1.3e-07 Score=49.60 Aligned_cols=66 Identities=29% Similarity=0.604 Sum_probs=42.9
Q ss_pred eEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecC-----cccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131 56 RVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDG-----RQIPGRTSSTSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 56 ~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~-----~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
.+...+.......+. +.|.|.+. .+ .+.+.|.... ...........|.+.++..+|.|.|.|.|.|
T Consensus 3 ~I~~~~~~~~~~~~~-~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 3 QISVPPPPVVTSGGS-VTLTCSAEGGPP---PPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEESTSEEETTEE-EEEEEEESSEES---SEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEcCCCcEeecee-EEEEEEEccccC---CeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 333334433333333 99999999 44 7899998110 0000111167899999999999999999986
No 163
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.60 E-value=2e-06 Score=47.35 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=45.4
Q ss_pred CcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc--------CCCcc---------eeeEEEccCCCCCCceEEEEE
Q psy11131 62 PLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI--------PGRTS---------STSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~--------~~~~~---------~~~l~~~~~~~~~~g~y~C~~ 123 (150)
..+.+.+|+++.|.|.+. .. ...+.|++.+..+ ..+.+ ...|.|..+..+|.|.|.|.+
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~---~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNND---DSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred CceEEcCCCcEEEEEEEccCC---ccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEE
Confidence 346788999999999998 65 5667787654321 11111 456999999999999999999
Q ss_pred Ee
Q psy11131 124 RR 125 (150)
Q Consensus 124 ~~ 125 (150)
..
T Consensus 82 ~t 83 (95)
T cd05881 82 YT 83 (95)
T ss_pred Ec
Confidence 85
No 164
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.60 E-value=1.7e-07 Score=49.46 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=33.6
Q ss_pred eCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 15 LGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 15 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..+.|.|.+++.+|+|.|+|.+.|..|...+.+.|.|
T Consensus 39 ~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 39 DGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred cCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 3488999999999999999999999999888888876
No 165
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.59 E-value=2.6e-07 Score=49.24 Aligned_cols=42 Identities=36% Similarity=0.457 Sum_probs=32.9
Q ss_pred CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEE
Q psy11131 9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQ 50 (150)
Q Consensus 9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~ 50 (150)
+.|+.... ++|.|.++..+|+|.|.|.+.|..|.. +....|+
T Consensus 35 ~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 35 AGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 45665544 889999999999999999999988865 4455554
No 166
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.59 E-value=2.1e-07 Score=51.64 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=32.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 57999999999999999999999999888888765
No 167
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.59 E-value=2.1e-06 Score=49.19 Aligned_cols=68 Identities=15% Similarity=0.273 Sum_probs=47.2
Q ss_pred CCcEEEecCCcEEEEEEec-CC-CCCCcEEEEee---------------cCcccCCC-c----c----------eeeEEE
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFK---------------DGRQIPGR-T----S----------STSLVI 108 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~---------------~~~~~~~~-~----~----------~~~l~~ 108 (150)
+..+.+..|+.+.|.|... .. ......+.|.. ++...... . + ..++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3456778899999999987 32 11156899933 22221100 0 1 468999
Q ss_pred ccCCCCCCceEEEEEEeCCC
Q psy11131 109 NPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 109 ~~~~~~~~g~y~C~~~~~~g 128 (150)
.++...|.|.|.|.+.|.-+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999998754
No 168
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.59 E-value=1.4e-07 Score=50.51 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=30.4
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ 50 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 50 (150)
+.|.|.++..+|+|.|+|.+.|..|.....+.|+
T Consensus 46 ~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 46 GCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4699999999999999999999999988777664
No 169
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.58 E-value=2.3e-07 Score=50.99 Aligned_cols=35 Identities=40% Similarity=0.565 Sum_probs=31.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.+|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 58 ASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 37999999999999999999999998888777654
No 170
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.58 E-value=1.2e-07 Score=49.45 Aligned_cols=35 Identities=40% Similarity=0.689 Sum_probs=32.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 36 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 36 KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 68999999999999999999999998888887776
No 171
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.57 E-value=4.5e-07 Score=48.08 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=29.7
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCccee--EEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~ 52 (150)
+.|.|.++..+|+|.|+|.+.|..|... ..+.|.|.
T Consensus 38 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 38 RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 6899999999999999999999988764 34555543
No 172
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.57 E-value=2.3e-07 Score=51.34 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=31.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 57999999999999999999999999888877764
No 173
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.57 E-value=1.6e-07 Score=50.63 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=32.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
+.|.|.+++.+|+|.|.|.+.|..+..+..+.|.|+
T Consensus 49 s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v~ 84 (84)
T cd05742 49 STLTIPNATLKDSGTYTCAASSGTMDQKESTKVNIH 84 (84)
T ss_pred EEEEECCCChhhCEEEEEEEccCCCceEEEEEEEEC
Confidence 689999999999999999999998888888777663
No 174
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.56 E-value=1.8e-07 Score=51.04 Aligned_cols=46 Identities=46% Similarity=0.662 Sum_probs=37.4
Q ss_pred cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+..+.++.+.. ..|.|.++..+|+|.|.|.+.+..|..+..+.|.|
T Consensus 41 l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 41 LTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 33455555543 68999999999999999999999888888888775
No 175
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.56 E-value=4.3e-07 Score=50.46 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=35.3
Q ss_pred CceEEeC-----CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEe
Q psy11131 10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVS 52 (150)
Q Consensus 10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~ 52 (150)
.|..+.. .+|.|.|++.+|.|.|.|.+.+ +.|..++.+.|+|.
T Consensus 51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 4555443 8999999999999999999998 67777888888773
No 176
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.55 E-value=8.6e-07 Score=50.18 Aligned_cols=65 Identities=23% Similarity=0.431 Sum_probs=48.9
Q ss_pred CCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc--c------------CCCcc----------eeeEEEccCCCC
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ--I------------PGRTS----------STSLVINPVGRE 114 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~--~------------~~~~~----------~~~l~~~~~~~~ 114 (150)
.+....+.+|+++.|.|... .+ ...+.|++.... . ....+ ...|.|.++..+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~---~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTST---FYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCC---ccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 45567789999999999998 66 889999874311 0 00001 458999999999
Q ss_pred CCceEEEEEEeCC
Q psy11131 115 DRGIYQCIARRSD 127 (150)
Q Consensus 115 ~~g~y~C~~~~~~ 127 (150)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998653
No 177
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.55 E-value=1.8e-06 Score=46.09 Aligned_cols=66 Identities=17% Similarity=0.376 Sum_probs=46.0
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----------eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----------~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~ 138 (150)
+.|.|.+. .| .+.+.|++++..+..... .+.|.|.....+|...|.|.+.|..-........|.
T Consensus 2 ~~L~C~s~gSkP---~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~ 78 (82)
T cd05883 2 IELNCTAMASKP---AATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE 78 (82)
T ss_pred EEEEEEecCCCC---CCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence 67899998 78 999999998876643210 456777665555666799999987643345555555
Q ss_pred Ec
Q psy11131 139 LG 140 (150)
Q Consensus 139 v~ 140 (150)
|.
T Consensus 79 V~ 80 (82)
T cd05883 79 VQ 80 (82)
T ss_pred EE
Confidence 54
No 178
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.54 E-value=1.9e-07 Score=50.62 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=32.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
+.|.|.+++.+|+|.|+|.+.|..+.....+.|.|+
T Consensus 50 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 50 STLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 689999999999999999999988877888888876
No 179
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.53 E-value=1.8e-07 Score=52.20 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=33.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
..|.|.++..+|+|.|+|.+.|..|..+..+.|.|.
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 679999999999999999999999998888888875
No 180
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.53 E-value=2e-07 Score=48.44 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=30.3
Q ss_pred CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+..|.|.++..+|+|.|+|.+.|..|.......+++
T Consensus 33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 368999999999999999999999887666655554
No 181
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.52 E-value=5.7e-07 Score=49.39 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=35.4
Q ss_pred cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131 6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 49 (150)
+..+.++.+.. +.|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus 44 l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 44 IVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred CCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 34445666543 589999999999999999999999988877665
No 182
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.52 E-value=2.6e-07 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=30.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ 50 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 50 (150)
+.|.|.+++..|+|.|+|.|.|..|.....+.+.
T Consensus 44 ~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 44 GCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 5799999999999999999999999877776654
No 183
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.52 E-value=3.2e-07 Score=48.76 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=33.9
Q ss_pred cCCCCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEE
Q psy11131 6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ 50 (150)
Q Consensus 6 ~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 50 (150)
+..+.++.+.. +.|.|.++..+|+|.|.|.+.|..|.......+.
T Consensus 27 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 27 VPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 33445555432 5799999999999999999999988876654443
No 184
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.52 E-value=5.7e-07 Score=49.28 Aligned_cols=42 Identities=31% Similarity=0.509 Sum_probs=33.0
Q ss_pred CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEE
Q psy11131 10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 51 (150)
.++.+.. ++|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus 46 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 46 PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 3444443 689999999999999999999998874 44666665
No 185
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.52 E-value=2.2e-07 Score=51.92 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=33.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
++|.|.++..+|+|.|+|.+.|..|..+..+.|.|.
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 579999999999999999999999998888888775
No 186
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.52 E-value=8.2e-07 Score=46.92 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=35.6
Q ss_pred ceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 11 RTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 11 ~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
++.... ..|.|.++..+|.|.|+|.+.|..|.....+.|.|.
T Consensus 31 ~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 31 QLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred cEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 444443 569999999999999999999999998888888875
No 187
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.50 E-value=4e-07 Score=51.64 Aligned_cols=39 Identities=28% Similarity=0.442 Sum_probs=35.1
Q ss_pred CeEEEcCCC-CCCCeEEEEEeccCCcceeEEEEEEEecCc
Q psy11131 17 PILAIEGVT-AEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55 (150)
Q Consensus 17 ~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~ 55 (150)
+.|.|.++. .+|.|.|+|.+.|..|.....+.|.|..+|
T Consensus 69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 69 SILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred eEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 579999997 599999999999999999999999988765
No 188
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.49 E-value=2.8e-06 Score=46.84 Aligned_cols=59 Identities=22% Similarity=0.323 Sum_probs=45.0
Q ss_pred cEEEecCCcEEEEEEecCCCCCCcEEEEeecCcccCCC--------cceeeEEEccCCCCCCceEEEEEE
Q psy11131 63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR--------TSSTSLVINPVGREDRGIYQCIAR 124 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~--------~~~~~l~~~~~~~~~~g~y~C~~~ 124 (150)
...+..|++++|.|....+ ...+.|++++...... ...+.+.|..+...|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~~---~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDIR---FDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCCC---CCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 3457789999999988744 5679999977543211 115678999999999999999975
No 189
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.49 E-value=8.6e-07 Score=49.19 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=49.3
Q ss_pred ecCCcEEEEEEec--CCCCCCcEEEEeecCccc--CC-----------C----cc------eeeEEEccCCCCCCceEEE
Q psy11131 67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI--PG-----------R----TS------STSLVINPVGREDRGIYQC 121 (150)
Q Consensus 67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~--~~-----------~----~~------~~~l~~~~~~~~~~g~y~C 121 (150)
..|+++.|.|... .. ...+.|++....+ .. . .+ ...|.|.++..+|+|.|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~---~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPDGTE---IESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCCCcE---EEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEE
Confidence 3688899999765 22 5678887642110 00 0 00 3689999999999999999
Q ss_pred EEEeCCCCceeeeEEEEE
Q psy11131 122 IARRSDGDVAQGSAELQL 139 (150)
Q Consensus 122 ~~~~~~g~~~~~~~~l~v 139 (150)
.+....|......+.|.|
T Consensus 79 ~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 79 EINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEcCCCCeEEEEEEEEe
Confidence 999887766677777765
No 190
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.48 E-value=5e-06 Score=46.24 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=31.0
Q ss_pred eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL 139 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v 139 (150)
..+|.|.++..+|.|.|.|.+.+ +.| ..+.++.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g-~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTG-NRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCC-CeEEEEEEEE
Confidence 47899999999999999999999 566 5777777776
No 191
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.48 E-value=7.6e-07 Score=46.50 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=30.6
Q ss_pred CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 49 (150)
.++...+.+|.|.++..+|+|.|+|.+.+..........+
T Consensus 29 ~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 29 SRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred cEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 4555555789999999999999999999875554444333
No 192
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.47 E-value=2.3e-06 Score=48.56 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=31.3
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
...|.|.+++.+|+|.|.|.+..... .....+.|.|.+
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~~-~~~~~v~l~V~g 108 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGIE-DEQDTVPLEVTG 108 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCCC-cceEEEEEEEEE
Confidence 46799999999999999999997654 567778887764
No 193
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.47 E-value=1.3e-06 Score=47.99 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=26.8
Q ss_pred eCCeEEEcCCCCCCCeEEEEEeccCCcceeEE
Q psy11131 15 LGPILAIEGVTAEDSGTYRCSSSNIGGEATAE 46 (150)
Q Consensus 15 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 46 (150)
.++.|.|.++..+|+|.|+|.+.+..+.....
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 45889999999999999999999876654443
No 194
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.46 E-value=6.2e-07 Score=48.39 Aligned_cols=36 Identities=33% Similarity=0.523 Sum_probs=29.8
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc--ceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~l~v~ 52 (150)
..|.|.+++.+|+|.|.|.+.+..+ .....+.|+|.
T Consensus 46 s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 46 STLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 5799999999999999999998655 45666777765
No 195
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.46 E-value=3.3e-06 Score=47.06 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=29.1
Q ss_pred eeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 104 ~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
..|.|.++..+|.|.|.|.+.+..+ .....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~-~~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGF-YEEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCc-EEEEEEEEEE
Confidence 5799999999999999999998766 4666666665
No 196
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.44 E-value=9.4e-07 Score=48.54 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=27.7
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQ 50 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~ 50 (150)
.+|.|.+++.+|+|.|+|.+.|..|. ..+.+.|.
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEE
Confidence 47999999999999999999998544 45555554
No 197
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.43 E-value=6.5e-07 Score=48.34 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=31.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 57999999999999999999999999888887764
No 198
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.43 E-value=1.5e-06 Score=47.61 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=36.3
Q ss_pred CCCceEEeCCeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEec
Q psy11131 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVST 53 (150)
Q Consensus 8 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~ 53 (150)
.+.++....++|.|.++..+|+|.|+|.+.+ ..+.....+.|+|..
T Consensus 44 ~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 44 TEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90 (91)
T ss_pred ccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence 3467777778899999999999999999974 556566677777753
No 199
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.42 E-value=1.5e-06 Score=47.94 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=32.3
Q ss_pred CCeEEEcCCCCCCCeEEEEEec-cCCcceeEEEEEEEe
Q psy11131 16 GPILAIEGVTAEDSGTYRCSSS-NIGGEATAEVRLQVS 52 (150)
Q Consensus 16 ~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~ 52 (150)
+.+|.|.|++.+|.|.|.|.+. .+.|...+.+.|+|.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTVL 96 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEEC
Confidence 3899999999999999999976 568888999888873
No 200
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.41 E-value=4.1e-06 Score=47.63 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=31.2
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
...|.|.+++.+|+|.|.|.+..... ..+..+.|.|.+
T Consensus 73 ~asL~I~nl~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~g 110 (112)
T cd05900 73 DATLEITELRSNDSGTYRCEVMHGIE-DNYDTVEVQVKG 110 (112)
T ss_pred CcEEEEeecccccCEEEEEEEecCCC-CceeEEEEEEEe
Confidence 56899999999999999999997665 567777777654
No 201
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.38 E-value=4.9e-06 Score=47.15 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=31.5
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
..+|.|.+++.+|.|.|.|.+..... .....+.|.|.+
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~-~~~~~v~L~V~g 108 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGIN-DEQDTVPLEVTG 108 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCc-ccEEEEEEEEEE
Confidence 46899999999999999999998664 567778887753
No 202
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.38 E-value=6.4e-07 Score=47.91 Aligned_cols=35 Identities=37% Similarity=0.621 Sum_probs=30.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 48 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 48 WTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred EEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 57999999999999999999999888777776653
No 203
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.38 E-value=8.7e-07 Score=48.43 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=31.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..|.|.++..+|.|.|.|.+.|..|.....+.|.|
T Consensus 56 ~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 56 YNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 57999999999999999999999999888887764
No 204
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.37 E-value=1.1e-05 Score=46.14 Aligned_cols=68 Identities=15% Similarity=0.325 Sum_probs=45.9
Q ss_pred CCcEEEecCCcEEEEEEec-CC-CCCCcEEEEeec---Ccc---c----C-----CC----cc----------eeeEEEc
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKD---GRQ---I----P-----GR----TS----------STSLVIN 109 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~---~~~---~----~-----~~----~~----------~~~l~~~ 109 (150)
+..+.+.+|+.+.|.|... .+ ......+.|++. +.. + . .. .+ ...|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556788999999999976 32 111246999642 111 0 0 00 00 3569999
Q ss_pred cCCCCCCceEEEEEEeCCC
Q psy11131 110 PVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 110 ~~~~~~~g~y~C~~~~~~g 128 (150)
+++.+|+|.|.|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999998654
No 205
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.37 E-value=1.9e-06 Score=46.57 Aligned_cols=42 Identities=36% Similarity=0.625 Sum_probs=32.0
Q ss_pred CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEE
Q psy11131 9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQ 50 (150)
Q Consensus 9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~ 50 (150)
+.++.... +.|.|.++..+|+|.|+|.+.|..|.. +..+.|.
T Consensus 42 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 42 NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 34454443 789999999999999999999988774 4445544
No 206
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.37 E-value=1.3e-05 Score=46.01 Aligned_cols=68 Identities=18% Similarity=0.330 Sum_probs=45.9
Q ss_pred CCcEEEecCCcEEEEEEec-CC-CCCCcEEEEeecCc------c---------cC-CCcc--------------eeeEEE
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PY-DSGPYLIAWFKDGR------Q---------IP-GRTS--------------STSLVI 108 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p-~~~~~~~~w~~~~~------~---------~~-~~~~--------------~~~l~~ 108 (150)
|..+.+.+|+.+.|.|... .. ......+.|++... . .. .... ...|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999886 32 10135689965211 0 00 0000 257999
Q ss_pred ccCCCCCCceEEEEEEeCCC
Q psy11131 109 NPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 109 ~~~~~~~~g~y~C~~~~~~g 128 (150)
.+++.+|.|.|.|.+.+.-.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999997644
No 207
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.37 E-value=1.7e-05 Score=43.84 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=29.5
Q ss_pred eeeEEEccCCCCCCceEEEEEEeC-CCCceeeeEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIARRS-DGDVAQGSAELQL 139 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~-~g~~~~~~~~l~v 139 (150)
..+|.|.++..+|.|.|.|.+.+. .| ..+.+..|.|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G-~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLG-NTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCC-CeeEEEEEEE
Confidence 568999999999999999998754 56 5677777765
No 208
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.36 E-value=1e-05 Score=46.21 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=32.4
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcC
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~ 141 (150)
..+|.|.+++..|.|.|.|.+..... ....++.|.|.+
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~-~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIE-DTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCc-ccEEEEEEEEEE
Confidence 47899999999999999999998876 577788887754
No 209
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.36 E-value=1.7e-06 Score=48.06 Aligned_cols=42 Identities=21% Similarity=0.194 Sum_probs=34.5
Q ss_pred CceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.|+...+..|.|.++..+|+|.|+|.+.|........+.|+|
T Consensus 63 ~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 63 VRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred eeEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 478888899999999999999999999998655555555543
No 210
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.36 E-value=7.5e-07 Score=48.94 Aligned_cols=34 Identities=44% Similarity=0.615 Sum_probs=30.9
Q ss_pred eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 59 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 59 SLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 7999999999999999999999999888877764
No 211
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.36 E-value=1.7e-05 Score=42.59 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=44.9
Q ss_pred EEEecCCcEEEEEEec-CCCCCCc--EEEEeecCcccCC-C-cceeeEEEccCCCCCCceEEEEEEeC
Q psy11131 64 LSVHLDGSANFQCEIT-PYDSGPY--LIAWFKDGRQIPG-R-TSSTSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~p~~~~~--~~~w~~~~~~~~~-~-~~~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
..+..|+.+.|.|... .+ .| .+.|...+..... . .....|.+..+...|+|.++|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s---~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNS---LPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCC---CCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 3578899999999996 44 44 9999865443221 1 11578999999999999999999743
No 212
>PHA02633 hypothetical protein; Provisional
Probab=98.35 E-value=3.9e-06 Score=41.62 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=32.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~ 54 (150)
..|.|-++..+|+|.|.|...|........+.|+|...
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR 55 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence 68999999999999999999987666677777777643
No 213
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.34 E-value=1e-06 Score=46.58 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=27.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEV 47 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 47 (150)
..|.|.++..+|+|.|.|.+.|..|..+..+
T Consensus 44 ~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 44 SELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred EEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 6799999999999999999999888766554
No 214
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.34 E-value=2.7e-06 Score=47.43 Aligned_cols=35 Identities=29% Similarity=0.492 Sum_probs=29.8
Q ss_pred CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 51 (150)
.+|.|.|++.+|+|.|.|.+.+ +.|...+.+.|.|
T Consensus 64 ~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 64 GALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred eEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 6899999999999999999886 5676677777776
No 215
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.34 E-value=2.4e-06 Score=47.98 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCceEEeC-CeEEEcCCCCCCCeEEEEEeccCC-cceeEEEEEE
Q psy11131 9 GPRTRVLG-PILAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQ 50 (150)
Q Consensus 9 ~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~ 50 (150)
+.|..+.. ++|.|.+++.+|+|.|.|.+.+.. ........|.
T Consensus 61 ~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 61 SGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 45666665 899999999999999999998865 3344444443
No 216
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.33 E-value=1.7e-05 Score=43.88 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=28.9
Q ss_pred eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL 139 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v 139 (150)
...|.|.++...|+|.|.|.+.. +.| .....+.|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g-~~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQG-NRQKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCC-cEEEEEEEEe
Confidence 35899999999999999999875 455 5666676665
No 217
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.32 E-value=4e-06 Score=46.24 Aligned_cols=42 Identities=31% Similarity=0.532 Sum_probs=32.2
Q ss_pred CCCceEEeCCeEEEcCCC-CCCCeEEEEEeccCCcceeE-EEEE
Q psy11131 8 PGPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEATA-EVRL 49 (150)
Q Consensus 8 ~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~-~~~l 49 (150)
.+.++.+..++|.|.++. ..|+|.|+|.+.|..|.... .+.|
T Consensus 49 ~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 49 PESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 345677767899998865 69999999999999887543 4444
No 218
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.32 E-value=1e-05 Score=44.85 Aligned_cols=36 Identities=42% Similarity=0.589 Sum_probs=29.0
Q ss_pred eeeEEEccCCCCCCceEEEEEEeC-CCCceeeeEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIARRS-DGDVAQGSAELQL 139 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~-~g~~~~~~~~l~v 139 (150)
...|.|.++..+|+|.|.|.+... .| ..+..+.|.|
T Consensus 60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g-~~~~~~~L~v 96 (97)
T cd05846 60 STSITIWNVTLEDEGCYKCIFNTFPDG-SKSGTMCLTV 96 (97)
T ss_pred ccEEEEeCCceeeeEEEEEEEEeCCCC-CeeeEEEEEE
Confidence 467999999999999999998754 55 5667777765
No 219
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.32 E-value=1.1e-05 Score=44.85 Aligned_cols=67 Identities=15% Similarity=0.311 Sum_probs=46.0
Q ss_pred EeCCCcEEEecCCcEEEEEEec--CCCCCCcE--EEEeecCcccCCCcc----------eeeEEEccCCCCCCc-eEEEE
Q psy11131 58 DVNPPLLSVHLDGSANFQCEIT--PYDSGPYL--IAWFKDGRQIPGRTS----------STSLVINPVGREDRG-IYQCI 122 (150)
Q Consensus 58 ~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~--~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g-~y~C~ 122 (150)
.+.+....+.+|+.++|.|.+. .| ... +.|++++..+..... ...+.+. +..+|.| .|.|.
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P---~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~ 80 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAP---RQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCE 80 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCC---CCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEE
Confidence 3444444568999999999998 66 554 799998876643221 3455554 4455666 79999
Q ss_pred EEeCCC
Q psy11131 123 ARRSDG 128 (150)
Q Consensus 123 ~~~~~g 128 (150)
+.+..+
T Consensus 81 A~l~l~ 86 (100)
T cd05755 81 TELDLR 86 (100)
T ss_pred EEeccC
Confidence 997665
No 220
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.31 E-value=9.5e-06 Score=46.04 Aligned_cols=65 Identities=22% Similarity=0.431 Sum_probs=47.3
Q ss_pred eCCCcEEEecCCcEEEEEEecCCCCCCcEEEEeecCc--ccC--------------C--Cc---------ceeeEEEccC
Q psy11131 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR--QIP--------------G--RT---------SSTSLVINPV 111 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~~p~~~~~~~~w~~~~~--~~~--------------~--~~---------~~~~l~~~~~ 111 (150)
..|....+.+|+.+.|.|....+ ...+.|++... ... . .. ....|.|.++
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~~---~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTSG---HDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECCC---CCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 34666788999999999988644 57899987432 100 0 00 0357999999
Q ss_pred CCCCCceEEEEEEeC
Q psy11131 112 GREDRGIYQCIARRS 126 (150)
Q Consensus 112 ~~~~~g~y~C~~~~~ 126 (150)
..+|+|.|.|.+.+.
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 80 EPEDSAVYLCASSLG 94 (110)
T ss_pred ChhhCEEEEEEeeCC
Confidence 999999999998854
No 221
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.30 E-value=3.8e-06 Score=43.52 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 49 (150)
..++......|.|.++ .|+|.|+|.+.|..|...+.+.|
T Consensus 30 ~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 30 EDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred ccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 3344333367999987 58999999999999988777665
No 222
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.29 E-value=1.5e-06 Score=45.71 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=27.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 48 (150)
..|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 43 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 43 SELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred EEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 67999999999999999999999887665543
No 223
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.28 E-value=2.6e-05 Score=43.48 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=29.7
Q ss_pred eeeEEEccCCCCCCceEEEEEEe-CCCCceeeeEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL 139 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~-~~g~~~~~~~~l~v 139 (150)
...|.|.++..+|+|.|.|.+.+ +.| ..+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g-~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAG-NFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCC-CeeeEEEEEe
Confidence 46899999999999999999997 556 4577777766
No 224
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.26 E-value=4.2e-06 Score=45.80 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=30.6
Q ss_pred CceEEeC-CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEE
Q psy11131 10 PRTRVLG-PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQ 50 (150)
Q Consensus 10 ~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~ 50 (150)
.|+.+.. ++|.|.+++.+|+|.|+|.+....+. ....+.|.
T Consensus 49 ~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 49 GRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred CeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 5566544 89999999999999999998876533 44445444
No 225
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.26 E-value=2.6e-06 Score=47.43 Aligned_cols=35 Identities=37% Similarity=0.439 Sum_probs=29.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.+|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 57999999999999999999987666666677665
No 226
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.25 E-value=2.7e-06 Score=47.94 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=32.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.+|+|.+++.+|+|.|.|.+.+..+.......|.|.+
T Consensus 68 ~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 68 ASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred ceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 7899999999999999999998766677788887764
No 227
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.25 E-value=8.2e-06 Score=45.75 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=44.3
Q ss_pred EEecCCcEEEEEEec-C-CCCCCcEEEEeecCcc-----c------------CCCcc----------eeeEEEccCCCCC
Q psy11131 65 SVHLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQ-----I------------PGRTS----------STSLVINPVGRED 115 (150)
Q Consensus 65 ~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~-----~------------~~~~~----------~~~l~~~~~~~~~ 115 (150)
.+.+|+.+.|.|... . + ...+.|++.... + ....+ ...|.|.++..+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~---~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFS---SYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcC---cceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHH
Confidence 356899999999998 5 5 788999874320 0 00001 3488999999999
Q ss_pred CceEEEEEEeCC
Q psy11131 116 RGIYQCIARRSD 127 (150)
Q Consensus 116 ~g~y~C~~~~~~ 127 (150)
.|.|.|.+.+..
T Consensus 79 ~G~Y~C~v~~~~ 90 (105)
T cd00099 79 SAVYYCAVSLSG 90 (105)
T ss_pred CEEEEEEEecCC
Confidence 999999998654
No 228
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.25 E-value=4.8e-06 Score=45.36 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=33.8
Q ss_pred CceEEeCCeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEEec
Q psy11131 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQVST 53 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v~~ 53 (150)
.++......|.|.+++.+|+|.|.|.+.+. .+...+...|.|.+
T Consensus 44 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 44 ERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred ceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 455555578999999999999999999865 34566667777653
No 229
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.24 E-value=9.2e-06 Score=46.01 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=51.0
Q ss_pred CCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCc-----ccC---CCcc---------------------eeeEEEc
Q psy11131 61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-----QIP---GRTS---------------------STSLVIN 109 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~-----~~~---~~~~---------------------~~~l~~~ 109 (150)
+..+.+.+|+.+.|.|... .. ...+.|++... .+. .... ...|.|.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~---~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSN---QSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSS---GSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred CCeEEEecCCCEEEEEEEeCCCC---cceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 4556788999999999987 23 67999987432 110 0000 3469999
Q ss_pred cCCCCCCceEEEEEEeCCCCceeeeEEEE
Q psy11131 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138 (150)
Q Consensus 110 ~~~~~~~g~y~C~~~~~~g~~~~~~~~l~ 138 (150)
++..+|+|.|.|.+.............|.
T Consensus 85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~ 113 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLT 113 (114)
T ss_dssp SESGGGEEEEEEEEEESSEEEEEEEEEEE
T ss_pred CCCcCcCEEEEEEEEECCCCEECCcEEEE
Confidence 99999999999999976322333334443
No 230
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.24 E-value=4.4e-06 Score=47.08 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=35.7
Q ss_pred CceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 10 PRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 10 ~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.|+.+.. .+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.+
T Consensus 56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 5666532 5899999999999999999988777778888887763
No 231
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.24 E-value=6e-06 Score=44.75 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=26.7
Q ss_pred CceEEeCCeEEEcCCCCCCCeEEEEEeccC
Q psy11131 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
.++.+..+.|.|.|++.+|+|.|+|.+...
T Consensus 41 ~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 41 AKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 577777789999999999999999998864
No 232
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.23 E-value=4.2e-06 Score=46.41 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=32.2
Q ss_pred CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEE
Q psy11131 10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 51 (150)
.|+.+.. .+|.|.+++.+|+|.|.|.+....+. ....+.|.|
T Consensus 52 ~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 52 ERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred eeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3555544 78999999999999999998876554 456666665
No 233
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.22 E-value=1e-05 Score=44.55 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=32.0
Q ss_pred CCceEEeCCeEEEcCCC-CCCCeEEEEEeccCCcceeE-EEEE
Q psy11131 9 GPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEATA-EVRL 49 (150)
Q Consensus 9 ~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~-~~~l 49 (150)
..++.+.++.|.|.++. .+|+|.|+|.+.|..|.... .++|
T Consensus 49 ~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 49 NDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45666667899999985 69999999999999887643 4443
No 234
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.21 E-value=2.7e-05 Score=43.87 Aligned_cols=66 Identities=24% Similarity=0.456 Sum_probs=46.2
Q ss_pred EeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc----------CC--Ccc--------eeeEEEccCCCC
Q psy11131 58 DVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI----------PG--RTS--------STSLVINPVGRE 114 (150)
Q Consensus 58 ~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~----------~~--~~~--------~~~l~~~~~~~~ 114 (150)
...|....+.+|+.+.|.|... ... ...+.|++.. ... .. ..+ ...|.|.++..+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~--~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVS--SNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCC--CCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 3456677889999999999986 321 4678898642 110 00 001 346899999999
Q ss_pred CCceEEEEEEe
Q psy11131 115 DRGIYQCIARR 125 (150)
Q Consensus 115 ~~g~y~C~~~~ 125 (150)
|+|.|.|.+.+
T Consensus 82 Dsg~Y~Ca~~~ 92 (106)
T cd04980 82 DAAVYYCQQYG 92 (106)
T ss_pred HCEEEEEEEeC
Confidence 99999999864
No 235
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.21 E-value=6.6e-06 Score=45.35 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=28.6
Q ss_pred CceEEeCCeEEEcCCC-CCCCeEEEEEeccCCccee
Q psy11131 10 PRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEAT 44 (150)
Q Consensus 10 ~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~ 44 (150)
.++.+..++|.|.++. .+|+|.|+|.+.|..|...
T Consensus 51 ~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 51 YRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred ceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 3555566899999985 6999999999999988764
No 236
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.19 E-value=6.4e-06 Score=46.77 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=31.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.+|+|.+++.+|+|.|.|.+..........+.|.|.+
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 6799999999999999999987656667777777764
No 237
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.19 E-value=8e-06 Score=46.45 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=30.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.+|+|.+++.+|+|.|+|.+..+....+....|.|..
T Consensus 74 asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 74 ATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 7899999999999999999987655666666776653
No 238
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.18 E-value=2.9e-05 Score=47.51 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=54.8
Q ss_pred cEEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc----------CCC--cc---------eeeEEEccCCCCCCceE
Q psy11131 63 LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI----------PGR--TS---------STSLVINPVGREDRGIY 119 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~----------~~~--~~---------~~~l~~~~~~~~~~g~y 119 (150)
...+.+|+.+.|.|... .. .+++.|.+....+ ..+ .+ ...+.|.++..+|+|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~---~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY 100 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFN---SILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCY 100 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCc---cceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEE
Confidence 34678899999999985 34 7889998753221 000 01 46799999999999999
Q ss_pred EEEEEeC-CCCceeeeEEEEEcCc
Q psy11131 120 QCIARRS-DGDVAQGSAELQLGGT 142 (150)
Q Consensus 120 ~C~~~~~-~g~~~~~~~~l~v~~~ 142 (150)
.|..... .|...+.+..|.|...
T Consensus 101 ~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 101 TCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEEecCCCCCceeEEEEEEEch
Confidence 9998754 3435677777777654
No 239
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.18 E-value=6.5e-06 Score=45.47 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=24.7
Q ss_pred CCCceEEeC-----CeEEEcCCCCCCCeEEEEEecc
Q psy11131 8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
.+.|+.+.. .+|.|.++..+|+|.|+|.+..
T Consensus 48 ~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 48 RDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred eCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 345665432 5899999999999999999876
No 240
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.17 E-value=3.8e-06 Score=45.35 Aligned_cols=34 Identities=38% Similarity=0.575 Sum_probs=30.1
Q ss_pred CCeEEEcCCCCCCCeEEEEEeccCCcceeEEEEE
Q psy11131 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 49 (150)
++.|.|.+++.+|+|.|.|.+.|..|...+.+.|
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4789999999999999999999998887777655
No 241
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.16 E-value=1e-05 Score=46.16 Aligned_cols=37 Identities=32% Similarity=0.446 Sum_probs=31.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.+|.|.+++.+|+|.|.|.+............|.|.+
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 7899999999999999999988776677777777764
No 242
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.16 E-value=6.9e-06 Score=45.38 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
.++|+.... .+|.|.++..+|+|.|.|.+....+ .+..+.|+|
T Consensus 48 ~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~~~~~~l~v 95 (95)
T cd07701 48 RDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV-KTSKAYLTV 95 (95)
T ss_pred cCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC-ccEEEEEEC
Confidence 456765521 5799999999999999999887432 355556554
No 243
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.14 E-value=3.9e-05 Score=41.13 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=37.1
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
+.|.|.+. .| .+.+.|++++..+..... .+.|.+.....++...|.|.+.+...
T Consensus 2 ~~L~C~~~~~~P---~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKP---AATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCc---CCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 57899998 68 889999998876642211 23344444444455689999998765
No 244
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.12 E-value=3.1e-05 Score=42.95 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=41.5
Q ss_pred EEecCCcEEEEEEec-C--CCCCCcEEEEeecCc--ccC------------CCcc--------eeeEEEccCCCCCCceE
Q psy11131 65 SVHLDGSANFQCEIT-P--YDSGPYLIAWFKDGR--QIP------------GRTS--------STSLVINPVGREDRGIY 119 (150)
Q Consensus 65 ~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~~--~~~------------~~~~--------~~~l~~~~~~~~~~g~y 119 (150)
.+.+|+++.|.|... . . ...+.|++... ... ...+ ...|.|.++..+|+|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~---~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 2 SVSPGETVTITCTGSSGNIS---GNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADY 78 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcC---CCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEE
Confidence 356899999999886 4 4 56788976422 110 0001 35799999999999999
Q ss_pred EEEEEe
Q psy11131 120 QCIARR 125 (150)
Q Consensus 120 ~C~~~~ 125 (150)
.|.+.+
T Consensus 79 ~C~~~~ 84 (98)
T cd04984 79 YCQVWD 84 (98)
T ss_pred EEEEcc
Confidence 999875
No 245
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.11 E-value=9.8e-06 Score=44.91 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=30.3
Q ss_pred CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~ 52 (150)
.+|+|.+++.+|+|.|.|.+.. ..|...+.+.|.|.
T Consensus 62 ~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 62 ATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEeC
Confidence 6899999999999999999864 56777777777763
No 246
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.09 E-value=9.3e-06 Score=46.03 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=30.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
.+|.|.+++.+|+|.|.|.+............|.|.+
T Consensus 72 asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 72 ASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred EEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 6899999999999999999988655567777777753
No 247
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.08 E-value=1.3e-05 Score=44.37 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=30.9
Q ss_pred CeEEEcCCCCCCCeEEEEEec-cCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSS-NIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v~ 52 (150)
.+|.|.+++.+|+|.|.|.+. .+.|..+..+.|+|.
T Consensus 61 ~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 61 TSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred cEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence 789999999999999999977 457778888888773
No 248
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.08 E-value=1.5e-05 Score=43.57 Aligned_cols=36 Identities=36% Similarity=0.601 Sum_probs=29.3
Q ss_pred CCceEEeCCeEEEcCCC-CCCCeEEEEEeccCCccee
Q psy11131 9 GPRTRVLGPILAIEGVT-AEDSGTYRCSSSNIGGEAT 44 (150)
Q Consensus 9 ~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~ 44 (150)
+.++....+.|.|.++. .+|+|.|+|.+.|..|...
T Consensus 50 ~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 50 DSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 45666666889999887 4999999999999888654
No 249
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.06 E-value=1.6e-05 Score=44.17 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=28.2
Q ss_pred CeEEEcCCCCCC-CeEEEEEeccCCcceeEEEEE
Q psy11131 17 PILAIEGVTAED-SGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 17 ~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l 49 (150)
+.|.|.++..+| .|.|.|.+.|..|.....+.|
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 379999999955 999999999999987777665
No 250
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.06 E-value=1.6e-05 Score=43.85 Aligned_cols=42 Identities=26% Similarity=0.436 Sum_probs=30.3
Q ss_pred CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.|+.... .+|.|.+++.+|+|.|.|.+..... .++.+.|+|
T Consensus 49 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 49 DNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred cCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 35666531 5799999999999999999886532 355555554
No 251
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.06 E-value=3.3e-05 Score=42.51 Aligned_cols=60 Identities=22% Similarity=0.500 Sum_probs=42.2
Q ss_pred ecCCcEEEEEEec-C-CCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 67 HLDGSANFQCEIT-P-YDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 67 ~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
..|..+.|.|.+. . |. ...+.|++++..+..... .+.|.+......+.+.|.|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~--~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPP--DITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECC--CcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 3578999999999 4 51 468999998876543321 23455555555688999999997654
No 252
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.04 E-value=2.2e-05 Score=44.98 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=26.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQ 50 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~ 50 (150)
.+|.|.|++.+|.|.|+|.+.|.... ....+.|.
T Consensus 80 aSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 80 GSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred eEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 78999999999999999999986432 23444443
No 253
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.03 E-value=2.4e-05 Score=41.37 Aligned_cols=36 Identities=31% Similarity=0.515 Sum_probs=27.6
Q ss_pred CCceEEeC--CeEEEcCCCC----CCCeEEEEEeccCCccee
Q psy11131 9 GPRTRVLG--PILAIEGVTA----EDSGTYRCSSSNIGGEAT 44 (150)
Q Consensus 9 ~~~~~~~~--~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~ 44 (150)
+.++.... +.|.|.++.. +|+|.|+|.+.|..|...
T Consensus 29 ~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 29 DPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 34555443 8899998864 789999999999988744
No 254
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.01 E-value=5.1e-05 Score=43.46 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=46.0
Q ss_pred eCCCcEEEecCCcEEEEEEec-C-CCCCCcEEEEeecC--cc---c---------CCCcc----------eeeEEEccCC
Q psy11131 59 VNPPLLSVHLDGSANFQCEIT-P-YDSGPYLIAWFKDG--RQ---I---------PGRTS----------STSLVINPVG 112 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~-~-p~~~~~~~~w~~~~--~~---~---------~~~~~----------~~~l~~~~~~ 112 (150)
..+..+.+.+|+++.|.|... . . ...+.|++.. .. + ....+ ...|.|.++.
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~---~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~ 80 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWT---NYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQ 80 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCC---ceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCC
Confidence 345667789999999999976 3 4 6778998732 11 0 00011 3578999999
Q ss_pred CCCCceEEEEEEe
Q psy11131 113 REDRGIYQCIARR 125 (150)
Q Consensus 113 ~~~~g~y~C~~~~ 125 (150)
.+|+|.|.|.+..
T Consensus 81 ~~Dsg~Y~C~~~~ 93 (116)
T cd07706 81 LEDSAKYFCALST 93 (116)
T ss_pred HHHCEEEEEEEEC
Confidence 9999999999984
No 255
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.99 E-value=8.6e-05 Score=41.15 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=42.6
Q ss_pred EEEecCCcEEEEEEec--CCCCCCcEEEEeecCccc-------------CCCcc----------eeeEEEccCCCCCCce
Q psy11131 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI-------------PGRTS----------STSLVINPVGREDRGI 118 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~-------------~~~~~----------~~~l~~~~~~~~~~g~ 118 (150)
+.+.+|+++.|.|... .. ...+.|++..... ....+ ...|.|.++..+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~---~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNR---SYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCC---CcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEE
Confidence 3567899999999876 24 6678898753210 00001 3579999999999999
Q ss_pred EEEEEEeC
Q psy11131 119 YQCIARRS 126 (150)
Q Consensus 119 y~C~~~~~ 126 (150)
|.|.+...
T Consensus 79 Y~C~~~~~ 86 (98)
T cd05716 79 YWCGVGDD 86 (98)
T ss_pred EEEEcccC
Confidence 99998753
No 256
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.98 E-value=1.7e-05 Score=43.65 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~ 42 (150)
..|.|.++..+|+|.|+|.+.+..+.
T Consensus 55 ~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 55 TYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred CEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 68999999999999999999987544
No 257
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.98 E-value=4.2e-05 Score=42.26 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=26.2
Q ss_pred CeEEEcCCCCCCCeEEEEEecc-CCcceeEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSN-IGGEATAEVR 48 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~ 48 (150)
.+|.|.|++.+|+|.|.|.+.. +.|...+.+.
T Consensus 60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 7899999999999999999865 5666655544
No 258
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.98 E-value=2.9e-05 Score=42.78 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=27.3
Q ss_pred CeEEEcCC-----CCCCCeEEEEEeccC-Ccce-eEEEEEEE
Q psy11131 17 PILAIEGV-----TAEDSGTYRCSSSNI-GGEA-TAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~~-~~~~~l~v 51 (150)
++|.|.++ ...|.|.|+|.+.|. .|.. +..+.|+|
T Consensus 54 ~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 54 GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 66777776 689999999999999 8875 55666654
No 259
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.98 E-value=0.0002 Score=38.46 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=37.4
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
+.|.|.+. .| .+.+.|++++..+..... .+.+.+......+...|.|.+.+...
T Consensus 2 ~~LtC~a~g~~P---~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKP---AANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccC---CCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 57899998 68 889999999876543211 13344434445566789999998754
No 260
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=97.97 E-value=1.7e-05 Score=42.54 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=29.7
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
..|.|.++..+|+|.|.|.+.+..|.....+.|.|
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 46899999999999999999998888777766653
No 261
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.97 E-value=5.3e-05 Score=40.09 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=29.0
Q ss_pred CCCCceEEe--CCeEEEcCCCC----CCCeEEEEEeccCCcceeEE
Q psy11131 7 LPGPRTRVL--GPILAIEGVTA----EDSGTYRCSSSNIGGEATAE 46 (150)
Q Consensus 7 ~~~~~~~~~--~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~~ 46 (150)
..+.++.+. .++|.|.++.. .|+|.|+|.+.|..|.....
T Consensus 27 ~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 27 AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 345666654 38899987642 46999999999998875443
No 262
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.97 E-value=0.00022 Score=39.42 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.6
Q ss_pred eeeEEEccCCCCCCceEEEEEEeC-CC
Q psy11131 103 STSLVINPVGREDRGIYQCIARRS-DG 128 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~-~g 128 (150)
...|.|.++..+|.|.|.|.+... .|
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g 85 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQG 85 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCC
Confidence 478999999999999999999864 45
No 263
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.96 E-value=0.00013 Score=39.19 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=37.7
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
+.|.|.+. .| ...+.|++++..+..... .+.|.+......+...|.|.+.+...
T Consensus 2 ~~LtC~a~gf~P---~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKP---AADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccC---CCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 57899998 78 899999999887543211 23455544444556679999997654
No 264
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.96 E-value=1e-05 Score=44.58 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIG 40 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~ 40 (150)
+.|.|.+++++|+|.|+|.+.|..
T Consensus 60 G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 60 GNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred CcEEEeecCHhhCceeEEEEEecc
Confidence 999999999999999999999864
No 265
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=97.94 E-value=6.2e-05 Score=39.83 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=27.1
Q ss_pred CCceEEe--CCeEEEcCCCCC----CCeEEEEEeccCCcceeE
Q psy11131 9 GPRTRVL--GPILAIEGVTAE----DSGTYRCSSSNIGGEATA 45 (150)
Q Consensus 9 ~~~~~~~--~~~l~i~~~~~~----d~G~Y~C~~~~~~~~~~~ 45 (150)
+.++.+. .++|.|..+..+ |.|.|+|.+.|..|....
T Consensus 29 ~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 29 DPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 3445443 378888877653 789999999999887544
No 266
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.94 E-value=5.2e-05 Score=40.87 Aligned_cols=47 Identities=32% Similarity=0.212 Sum_probs=33.1
Q ss_pred ecCCCCceEEeCCeEEEcCCCCCCCeEEEEEecc-CCcceeEEEEEEE
Q psy11131 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQV 51 (150)
Q Consensus 5 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 51 (150)
++.++.|+......|.|.++..+|+|.|.|.+.- +.........|.|
T Consensus 35 ~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v 82 (85)
T cd05872 35 PLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNV 82 (85)
T ss_pred ccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEE
Confidence 3455677887777788999999999999998763 3333344444444
No 267
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.92 E-value=1.1e-05 Score=43.46 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=26.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQ 50 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~ 50 (150)
..|.|.+++.+|+|.|+|.+.+..+. .+....|+
T Consensus 48 ~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 48 SNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred ceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 67999999999999999999987653 23334443
No 268
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.92 E-value=9.2e-05 Score=39.21 Aligned_cols=43 Identities=42% Similarity=0.623 Sum_probs=32.6
Q ss_pred CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.++.... ..|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 39 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 39 SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 34444444 47999999999999999999987766666666655
No 269
>smart00409 IG Immunoglobulin.
Probab=97.92 E-value=9.2e-05 Score=39.21 Aligned_cols=43 Identities=42% Similarity=0.623 Sum_probs=32.6
Q ss_pred CCceEEeC----CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE
Q psy11131 9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51 (150)
Q Consensus 9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 51 (150)
+.++.... ..|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 39 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 39 SGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred CCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 34444444 47999999999999999999987766666666655
No 270
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.88 E-value=0.00027 Score=40.68 Aligned_cols=67 Identities=24% Similarity=0.266 Sum_probs=45.0
Q ss_pred CCCcEEEecCCcEEEEEEec-CC---CCCCcEEEEeecCcc-----c----C--------CCcc----------eeeEEE
Q psy11131 60 NPPLLSVHLDGSANFQCEIT-PY---DSGPYLIAWFKDGRQ-----I----P--------GRTS----------STSLVI 108 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~p---~~~~~~~~w~~~~~~-----~----~--------~~~~----------~~~l~~ 108 (150)
.|..+.+.+|+.+.|.|... .. ......+.|++.... + . ...+ ...|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 35667889999999999865 21 000356889864211 0 0 0000 357999
Q ss_pred ccCCCCCCceEEEEEEeC
Q psy11131 109 NPVGREDRGIYQCIARRS 126 (150)
Q Consensus 109 ~~~~~~~~g~y~C~~~~~ 126 (150)
.++..+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998753
No 271
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.87 E-value=0.00016 Score=41.37 Aligned_cols=63 Identities=16% Similarity=0.405 Sum_probs=45.1
Q ss_pred CCCcEEEecCCcEEEEEEec---CCCCCCcEEEEeecC--ccc----------C-------CCcc----------eeeEE
Q psy11131 60 NPPLLSVHLDGSANFQCEIT---PYDSGPYLIAWFKDG--RQI----------P-------GRTS----------STSLV 107 (150)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~~~--~~~----------~-------~~~~----------~~~l~ 107 (150)
.|....+.+|+.+.|.|... .+ .+.+.|++.. ... . ...+ ...|.
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~---~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 80 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFS---TTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLT 80 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCcc---ccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEE
Confidence 35566788999999999976 24 6789998742 110 0 0011 34789
Q ss_pred EccCCCCCCceEEEEEEe
Q psy11131 108 INPVGREDRGIYQCIARR 125 (150)
Q Consensus 108 ~~~~~~~~~g~y~C~~~~ 125 (150)
|.++..+|+|.|.|.+..
T Consensus 81 I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 81 IQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEECCHHHCEEEEEEEec
Confidence 999999999999999874
No 272
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=97.86 E-value=6.2e-05 Score=41.74 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCceEEeC--------CeEEEcCCCCCC-CeEEEEEeccCCcceeEEEEE
Q psy11131 9 GPRTRVLG--------PILAIEGVTAED-SGTYRCSSSNIGGEATAEVRL 49 (150)
Q Consensus 9 ~~~~~~~~--------~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~l 49 (150)
+.|+.+.. ..|.|.++...| .|.|.|.+.|..|.....+.|
T Consensus 48 ~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 48 SERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 46776643 679999998877 789999999999988776665
No 273
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.83 E-value=8.8e-05 Score=40.90 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCCceEEeC-----CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 8 PGPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 8 ~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
.++|+.... .+|+|.++..+|+|.|.|.+...
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 567777554 35999999999999999998753
No 274
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=97.77 E-value=9.8e-05 Score=40.81 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEEeccCCcc-eeEEEEEEE
Q psy11131 24 VTAEDSGTYRCSSSNIGGE-ATAEVRLQV 51 (150)
Q Consensus 24 ~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 51 (150)
++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEe
Confidence 4789999999999999888 666677765
No 275
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.75 E-value=3.3e-05 Score=41.02 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
+.|.|.++ .+|+|.|+|.+.+.
T Consensus 47 ~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 47 NSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEEeec-ccCCEEeEEECCCC
Confidence 78999999 99999999999875
No 276
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.73 E-value=5.6e-05 Score=41.61 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.6
Q ss_pred cCCCCceEEeC-CeEEEcCCCCCCCe-EEEEEeccCC
Q psy11131 6 VLPGPRTRVLG-PILAIEGVTAEDSG-TYRCSSSNIG 40 (150)
Q Consensus 6 ~~~~~~~~~~~-~~l~i~~~~~~d~G-~Y~C~~~~~~ 40 (150)
+..+.|+.... +.|.|+++..+|.| .|.|.+.+..
T Consensus 46 i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 46 ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 34567888765 99999999999999 7999999864
No 277
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.73 E-value=0.00051 Score=38.75 Aligned_cols=58 Identities=24% Similarity=0.395 Sum_probs=40.1
Q ss_pred EEecCCcEEEEEEec-CCCCCCcEEEEeecCcc---c--------C----------C-Ccc----------eeeEEEccC
Q psy11131 65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ---I--------P----------G-RTS----------STSLVINPV 111 (150)
Q Consensus 65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~---~--------~----------~-~~~----------~~~l~~~~~ 111 (150)
.+.+|+++.|.|... ... ...+.|++.... . . . ..+ ...|.|.++
T Consensus 2 ~v~~G~~vtL~C~~~~~~~--~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISE--NTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEecCCC--CCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 467899999999986 321 457899864221 0 0 0 001 235899999
Q ss_pred CCCCCceEEEEEE
Q psy11131 112 GREDRGIYQCIAR 124 (150)
Q Consensus 112 ~~~~~g~y~C~~~ 124 (150)
..+|+|.|.|...
T Consensus 80 ~~~Dsg~YyCa~~ 92 (107)
T cd07700 80 KPEDSGTYFCMTV 92 (107)
T ss_pred CHHHCEEEEEeEc
Confidence 9999999999976
No 278
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.71 E-value=0.00032 Score=35.36 Aligned_cols=53 Identities=36% Similarity=0.756 Sum_probs=39.9
Q ss_pred EEEEEEec-CCCCCCcEEEEeecCcccCCCc------------ceeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 72 ANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT------------SSTSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 72 ~~l~C~~~-~p~~~~~~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
+.|.|... .+ ...+.|.+.+....... ....+.+..+...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPP---PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCC---CCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 35789888 67 88999998765433211 05678888999999999999998654
No 279
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.70 E-value=0.00031 Score=38.12 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=39.7
Q ss_pred CCcEEEEEEec--CCCCCCcEEEEeecCcccCC---------Ccc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTS----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~---------~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
|+.+.+.|.+. .| .+.+.|+.++..+.. ... .+.|.+......+...+.|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P---~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYP---PPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS----EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeEC---CeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67899999887 88 999999988766510 100 34566655544556679999998764
No 280
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.70 E-value=0.00011 Score=42.13 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG 41 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 41 (150)
.+|+|.+++.+|+|.|.|.+.+...
T Consensus 79 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 79 ASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eEEEEeeCChhhCEEEEEEEEeCCC
Confidence 5799999999999999999987543
No 281
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.66 E-value=7.6e-05 Score=37.15 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=22.4
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG 41 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 41 (150)
..|.|.++...|+|.|+|.+.+..|
T Consensus 39 ~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 39 STLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred cEEEEeeCCcccCEEEEEEEecCCC
Confidence 7899999999999999999987643
No 282
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.64 E-value=0.00017 Score=41.35 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIG 40 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~ 40 (150)
.+|+|.+++.+|+|.|.|.+.+..
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~ 103 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPP 103 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCC
Confidence 579999999999999999998753
No 283
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.63 E-value=5.2e-05 Score=41.74 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG 41 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 41 (150)
.+|+|.+++.+|+|.|+|.+.+..+
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~~~ 89 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDKKE 89 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCccc
Confidence 4699999999999999999988643
No 284
>KOG3515|consensus
Probab=97.63 E-value=0.00029 Score=51.93 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=75.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec---CCCCCCcEEEEee
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT---PYDSGPYLIAWFK 92 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~---~p~~~~~~~~w~~ 92 (150)
..|...+..++.-+.|-|.+.|..+. ......+.|.+++.............+..+.+.|... .| .+.+.|..
T Consensus 59 ~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P---~~nlrW~~ 135 (741)
T KOG3515|consen 59 PTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRP---NPNLRWGF 135 (741)
T ss_pred CceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCC---Ccceeeee
Confidence 67778888888889999999987554 4456677777765544333344556778899999665 56 78999987
Q ss_pred cCcccCCCcc----------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 93 DGRQIPGRTS----------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 93 ~~~~~~~~~~----------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
+......... .+.+.+......+.|.|+|.+.+.
T Consensus 136 n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 136 NNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred ccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 7543221110 345666667788899999999984
No 285
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.54 E-value=0.0015 Score=34.28 Aligned_cols=54 Identities=19% Similarity=0.456 Sum_probs=34.4
Q ss_pred EEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
+.|.|.+. .|. ...+.|.+++..+..... .+.|.+......+...|.|.+....
T Consensus 2 ~~L~C~a~gf~P~--~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPP--DITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCC--CCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 67899998 661 469999998875322110 2344444444455668999988543
No 286
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.53 E-value=0.00041 Score=38.94 Aligned_cols=57 Identities=23% Similarity=0.450 Sum_probs=39.4
Q ss_pred EecCCcEEEEEEec-CCCCCCcEEEEeecCc----cc------CC------------Ccc--------eeeEEEccCCCC
Q psy11131 66 VHLDGSANFQCEIT-PYDSGPYLIAWFKDGR----QI------PG------------RTS--------STSLVINPVGRE 114 (150)
Q Consensus 66 ~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~----~~------~~------------~~~--------~~~l~~~~~~~~ 114 (150)
+.+|+.+.|.|... .. ...+.|++... .. .. ..+ ...|.|.++..+
T Consensus 3 v~~G~~vtL~C~~~~~~---~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 3 AELGQKVELKCEVLNSS---PTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred ccCCCeEEEEEEecCCC---CCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 46799999999876 43 55688876321 10 00 000 346999999999
Q ss_pred CCceEEEEEEe
Q psy11131 115 DRGIYQCIARR 125 (150)
Q Consensus 115 ~~g~y~C~~~~ 125 (150)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999998763
No 287
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.52 E-value=0.0004 Score=42.66 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=32.4
Q ss_pred CeEEEcCCCCCCCeEEEEEecc-CCc-ceeEEEEEEEecC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSN-IGG-EATAEVRLQVSTP 54 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~-~~~-~~~~~~~l~v~~~ 54 (150)
.+|.|.+++.+|+|.|.|.... +.| ..+...-|+|...
T Consensus 85 StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 85 STILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred ceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 7899999999999999998764 556 7888888988854
No 288
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.52 E-value=0.00031 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=32.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
+.|.+..++.+|+|.|+|.+.|.....+..+.|.|.
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 679999999999999999999998888888888764
No 289
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.49 E-value=0.0017 Score=35.62 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=34.4
Q ss_pred CCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc----------c-eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT----------S-STSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 69 g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~----------~-~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
++.+.|.|.+. .|. ...+.|.+++....... . ......-.+...+...|.|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~--~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPR--DIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCC--CcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 67799999999 561 34999999885221110 0 1111122233346778999998654
No 290
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.45 E-value=0.00015 Score=40.99 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=25.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v 51 (150)
.+|.|.+++.+|+|.|.|.+... .......+.|+|
T Consensus 79 ~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 79 FSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 36999999999999999998765 223344455544
No 291
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.43 E-value=0.00014 Score=36.82 Aligned_cols=18 Identities=61% Similarity=0.964 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCeEEEEEe
Q psy11131 19 LAIEGVTAEDSGTYRCSS 36 (150)
Q Consensus 19 l~i~~~~~~d~G~Y~C~~ 36 (150)
|.|.+++.+|+|.|+|.+
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999985
No 292
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.32 E-value=0.0063 Score=34.61 Aligned_cols=59 Identities=15% Similarity=0.402 Sum_probs=37.4
Q ss_pred EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCc-eEEEEEEeCC
Q psy11131 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRG-IYQCIARRSD 127 (150)
Q Consensus 66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g-~y~C~~~~~~ 127 (150)
...|+.+.|.|.+. .|. ...+.|++++..+..... .+.|.+.. ...|.+ .|.|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~--~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPR--DITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCC--CCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 44677899999998 662 469999999877542211 12233332 233334 4999999754
No 293
>PHA02633 hypothetical protein; Provisional
Probab=97.31 E-value=0.0011 Score=33.00 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=31.3
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCcC
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR 143 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~p 143 (150)
...|.|-++..+|+|.|.|.+.|..- ....++.+.|....
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETY-SDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCe-eEEEEEEEEEeecc
Confidence 56788889999999999999997654 56666777775543
No 294
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.28 E-value=0.0029 Score=34.85 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=36.7
Q ss_pred cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
....+.|.|.+. .|. ...+.|.+++..+..... .+.|.+....-.+...|.|.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~--~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPG--TIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECC--CCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 445689999998 663 578999998876522110 23333333222345679999986543
No 295
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.28 E-value=0.0018 Score=36.13 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=37.9
Q ss_pred EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCC
Q psy11131 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSD 127 (150)
Q Consensus 66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~ 127 (150)
...+..+.|.|.+. +|. ...+.|.++|..+..... .+.|.+....-.+...|.|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~--~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPG--FATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECC--CCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 33567799999998 553 578999999877632211 2333333322233567999998654
No 296
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.26 E-value=0.00072 Score=36.15 Aligned_cols=28 Identities=21% Similarity=0.602 Sum_probs=22.7
Q ss_pred CCeEEEcCCCCCCCeEEEEEeccCCcceeE
Q psy11131 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATA 45 (150)
Q Consensus 16 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 45 (150)
.+.|.|.++ .|+|.|.|.+.|..|....
T Consensus 48 ~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 48 PSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 367888887 5889999999999886543
No 297
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.25 E-value=0.00046 Score=38.93 Aligned_cols=32 Identities=25% Similarity=0.240 Sum_probs=25.5
Q ss_pred CCCceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 8 PGPRTRVLG------PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 8 ~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
..+|+.+.. .+|.|.+++.+|+|.|.|.+.+.
T Consensus 55 ~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~ 92 (109)
T cd04983 55 EKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSES 92 (109)
T ss_pred cCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecC
Confidence 346665542 57999999999999999998764
No 298
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.24 E-value=0.00045 Score=37.78 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
+.|.|.+++.+|+|.|+|.+.+.
T Consensus 53 ~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 53 AKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred EEEEccCCChhHCEEEEEEEECC
Confidence 56999999999999999998875
No 299
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.23 E-value=0.017 Score=40.78 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=57.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccC-Ccc--eeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNI-GGE--ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWF 91 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~-~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~ 91 (150)
-.|.|.+++..++|.|.=...+. .+. ....+.+.+..+|.+.+.+. .+.+|+.-...|.+. +|.. ...+.|+
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~-SvrlrWf 365 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPH-SVIVKWT 365 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEE
Confidence 45999999999999998655432 222 33445555566666555544 567899999999998 5532 7899999
Q ss_pred ecCcccCC
Q psy11131 92 KDGRQIPG 99 (150)
Q Consensus 92 ~~~~~~~~ 99 (150)
.++..+..
T Consensus 366 ~ng~~V~~ 373 (566)
T PHA03269 366 SNFGNIGK 373 (566)
T ss_pred eCCcccCc
Confidence 99877653
No 300
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.22 E-value=0.02 Score=40.16 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=57.1
Q ss_pred eEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEE--ecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeec
Q psy11131 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--STPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKD 93 (150)
Q Consensus 18 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v--~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~ 93 (150)
.|.|..++..++|.|.=...+..+.......++| ..+|.+.+.+. .+.+|+.-...|.+. +|.. ...+.|+.+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~-Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHS-SVKLRWYKN 275 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEEeC
Confidence 3999999999999998655444444444445555 55666655554 567899999999998 5532 779999999
Q ss_pred CcccC
Q psy11131 94 GRQIP 98 (150)
Q Consensus 94 ~~~~~ 98 (150)
+..+.
T Consensus 276 g~~V~ 280 (486)
T PHA03273 276 AKEVD 280 (486)
T ss_pred Ceecc
Confidence 88776
No 301
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.17 E-value=0.0034 Score=36.02 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=42.6
Q ss_pred CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecC--ccc---------------C--CCcc----------eeeEEEcc
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDG--RQI---------------P--GRTS----------STSLVINP 110 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~--~~~---------------~--~~~~----------~~~l~~~~ 110 (150)
|....+.+|+.+.|.|... ... ....+.|++.. ... . ...+ ...|.|.+
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~-~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTF-TSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCc-ccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 4556788999999999865 210 03568887632 110 0 0011 13689999
Q ss_pred CCCCCCceEEEEEEe
Q psy11131 111 VGREDRGIYQCIARR 125 (150)
Q Consensus 111 ~~~~~~g~y~C~~~~ 125 (150)
+..+|+|.|.|.+..
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998864
No 302
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.14 E-value=0.0064 Score=33.48 Aligned_cols=54 Identities=22% Similarity=0.411 Sum_probs=35.4
Q ss_pred cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
.+....|.|.+. +|. ...+.|.++|..+..+.. .+.|.+. ..+...|.|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~--~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPP--VLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECC--cCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 355679999998 663 578999999877543211 2334333 23455799999864
No 303
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.12 E-value=0.0014 Score=34.52 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=17.5
Q ss_pred eeeEEEccCCCCCCceEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~ 123 (150)
...|.|.+++.+|+|.|.|.+
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEcC
Confidence 357889999999999999963
No 304
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.12 E-value=0.00038 Score=36.04 Aligned_cols=22 Identities=50% Similarity=0.812 Sum_probs=20.4
Q ss_pred CeEEEcCCCCCCCeEEEEEecc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
+.|.|.++..+|.|.|+|.+.|
T Consensus 54 ~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 54 STLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEccCCHHhCcEEEEEEEC
Confidence 7899999999999999999875
No 305
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.10 E-value=0.025 Score=39.41 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=57.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCccee--EEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEee
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFK 92 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~ 92 (150)
..|.|..++...+|.|+=...+..+... ..+.+....+|.+.+.+. .+..|+.-...|.+. +|.. ...+.|+.
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~-Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGD-RAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEEe
Confidence 4599999999999999998665444322 334455555666655554 467899999999998 5532 67999999
Q ss_pred cCcccC
Q psy11131 93 DGRQIP 98 (150)
Q Consensus 93 ~~~~~~ 98 (150)
++..+.
T Consensus 259 ng~~V~ 264 (466)
T PHA03270 259 GGDEVF 264 (466)
T ss_pred CCcccc
Confidence 988764
No 306
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.10 E-value=0.00063 Score=35.77 Aligned_cols=35 Identities=40% Similarity=0.612 Sum_probs=26.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc-ceeEEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG-EATAEVRLQV 51 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v 51 (150)
..+.|.++..+|.|.|.|.+.+..+ ..+..+.|+|
T Consensus 45 ~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 45 NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 3477889999999999999988644 3455555554
No 307
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.10 E-value=0.0024 Score=32.34 Aligned_cols=51 Identities=18% Similarity=0.304 Sum_probs=34.2
Q ss_pred ecCCcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131 67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 67 ~~g~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
..|.+|.|.|+.. ...+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~-----~~~i~W~~n~~~~~g~--~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLS-----GDDIKWKKNDQVSQGS--DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCC-----CCCceEEeCCccCCCC--CceEEeeccC-CCCceEEEEeCC
Confidence 4688899999754 2238999988654432 2334444444 789999999853
No 308
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.07 E-value=0.00046 Score=38.58 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=21.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG 41 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 41 (150)
.+|.|.+++.+|+|.|.|.+.+..+
T Consensus 67 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 67 FTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEECCCCHHHCEEEEEEEecCCC
Confidence 4799999999999999999987543
No 309
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.06 E-value=0.0096 Score=32.71 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=35.8
Q ss_pred ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------eeeEE---EccCCCCCCceEEEEEEeC
Q psy11131 67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLV---INPVGREDRGIYQCIARRS 126 (150)
Q Consensus 67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------~~~l~---~~~~~~~~~g~y~C~~~~~ 126 (150)
..|....|.|.+. +|. ...+.|.++|..+. +.. ...+. ...+...+...|.|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~--~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPP--DIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCC--CCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 3466678999998 553 67899999998764 221 11111 1122344556799999864
No 310
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.03 E-value=0.011 Score=32.60 Aligned_cols=56 Identities=18% Similarity=0.316 Sum_probs=36.8
Q ss_pred cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
.++.+.|.|.+. +|. ...+.|.+++..+..... .+.|. +...+...|.|.+.....
T Consensus 13 ~~~~~~L~C~~~gFyP~--~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~---~~~~~~~~ysC~V~H~~l 84 (94)
T cd05766 13 LSHPHLLVCHVWGFYPP--EITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLE---TTPSRGDTYTCVVEHSSL 84 (94)
T ss_pred CCCCeEEEEEEeeecCC--CCEEEEEECCeecCCCceecceEECCCCcEEEEEEEE---EcCCCCCEEEEEEEeCCC
Confidence 578899999999 662 458999999876543210 12232 233455579999986543
No 311
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.01 E-value=0.0013 Score=37.25 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCceEEeC-----CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 9 GPRTRVLG-----PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 9 ~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
++|+.... ..|.|.+++.+|+|.|.|.+...
T Consensus 59 ~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 59 KDRFSASRPSLTRSSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred CCceEEECcCCCccEEEECCCChhhCEEEEEEeeCC
Confidence 35665433 56999999999999999998754
No 312
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.00 E-value=0.0094 Score=31.87 Aligned_cols=56 Identities=20% Similarity=0.484 Sum_probs=37.2
Q ss_pred cCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc--------------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~--------------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
.+..+.|.|.+. .|. ...+.|.+++..+..... .+.+.+. ..+...|.|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~--~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPK--DITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSS--TEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECC--CcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 377899999998 662 558999998876543221 2334444 3445579999986544
No 313
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.99 E-value=0.0054 Score=34.33 Aligned_cols=30 Identities=17% Similarity=0.619 Sum_probs=22.8
Q ss_pred EecCCcEEEEEEec--CCCCCCcEEEEeecCccc
Q psy11131 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI 97 (150)
Q Consensus 66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~ 97 (150)
+..+..+.|.|.+. +|. ...+.|.+++..+
T Consensus 13 ~~~~~~~tL~C~a~gFyP~--~i~v~W~k~g~~~ 44 (102)
T cd05768 13 LSLQETATLTCLVKGFSPS--DIFVKWLQNGQPL 44 (102)
T ss_pred hCcCCceEEEEEEeeEeCC--CCEEEEEECCEEC
Confidence 34467899999998 662 4588999988654
No 314
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.97 E-value=0.013 Score=32.39 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=35.5
Q ss_pred CcEEEEEEec--CCCCCCcEEEEeecCccc-C------CCcc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 70 GSANFQCEIT--PYDSGPYLIAWFKDGRQI-P------GRTS---STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 70 ~~~~l~C~~~--~p~~~~~~~~w~~~~~~~-~------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
....+.|.+. .| .+.+.|+++.... . .... .+.|.+......+...|.|.+.+...
T Consensus 16 ~~~va~C~s~~gkP---~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 16 PVTVATCVSANGKP---PATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred ccEEEEEECCCCcC---CCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 4567889997 88 9999999861111 0 0000 34555554444555579999998754
No 315
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.96 E-value=0.0016 Score=36.00 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=23.3
Q ss_pred CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131 10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
+|+.... .+|.|.++..+|+|.|.|.+.+
T Consensus 52 ~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 84 (98)
T cd04984 52 DRFSGSKSGNTASLTISGAQTEDEADYYCQVWD 84 (98)
T ss_pred CCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence 4665543 4699999999999999998764
No 316
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.93 E-value=0.0024 Score=35.32 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
.+|.|.+++.+|+|.|.|.+...
T Consensus 64 ~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 64 FTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred EEEEEcCCCHHHCEEEEEEcccC
Confidence 47999999999999999988764
No 317
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.91 E-value=0.00048 Score=36.37 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=22.1
Q ss_pred CCceEEeC------CeEEEcCCCCCCCeEEEEEe
Q psy11131 9 GPRTRVLG------PILAIEGVTAEDSGTYRCSS 36 (150)
Q Consensus 9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~ 36 (150)
.+|+.+.. .+|.|.+++.+|+|.|.|.+
T Consensus 48 ~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 48 KGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence 35665543 56999999999999999963
No 318
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.88 E-value=0.0018 Score=37.31 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=24.1
Q ss_pred CceEEeC------CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
+|+.+.. .+|+|.+++.+|+|.|.|.+...
T Consensus 67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 4766632 57999999999999999987653
No 319
>PHA03376 BARF1; Provisional
Probab=96.88 E-value=0.013 Score=36.40 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=43.6
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc---c--------------cCCCc--------ceeeEEEccCCCCCC
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR---Q--------------IPGRT--------SSTSLVINPVGREDR 116 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~---~--------------~~~~~--------~~~~l~~~~~~~~~~ 116 (150)
.+....|+.+.|.|.-. ......-.+.|++.+. . ..... ...+|.|.++...|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 34567789999999865 2211267888988422 0 00000 045788999999999
Q ss_pred ceEEEEEEeCC
Q psy11131 117 GIYQCIARRSD 127 (150)
Q Consensus 117 g~y~C~~~~~~ 127 (150)
|.|.|.++...
T Consensus 100 GtY~C~fQkge 110 (221)
T PHA03376 100 GNYLCRMKLGE 110 (221)
T ss_pred ceEEEEEEcCC
Confidence 99999998654
No 320
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.84 E-value=0.013 Score=32.34 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=36.0
Q ss_pred CcEEEEEEec--CCCCCCcEEEEeecCcccC-------CCcc---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 70 GSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------GRTS---STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 70 ~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~-------~~~~---~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
....+.|.+. .| .+.+.|+.+..... .+.. .+.|.+......+...|.|.+.+...
T Consensus 16 ~~~va~C~s~~gkP---aa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRP---PARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCC---CcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 4478899887 78 99999998621110 0111 34555555455555679999998754
No 321
>KOG3515|consensus
Probab=96.83 E-value=0.011 Score=44.18 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=78.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR 95 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~ 95 (150)
+.+.+.++...|.|.|.|.+.+..|.......+.+...+.............+..+...|... .+.. ...+.|.+.+.
T Consensus 458 ~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~-~~m~~~~r~ge 536 (741)
T KOG3515|consen 458 GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQD-QQMHHEPRSGE 536 (741)
T ss_pred cccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccc-hhhhcccccCC
Confidence 334467899999999999999998888887777777665544333334455666688889887 5521 55677877654
Q ss_pred ccCCCc----------ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 96 QIPGRT----------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 96 ~~~~~~----------~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
...... ....+.......-..+.|.|.+.+ .+........+.+
T Consensus 537 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~ 589 (741)
T KOG3515|consen 537 PPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKA 589 (741)
T ss_pred CCcccccccccccccCCccceeecccccccccceEEeecC-CCCccccceEEEe
Confidence 432110 034555566666667899999998 3323333334443
No 322
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.82 E-value=0.0083 Score=30.72 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 70 ~~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
+.+.|.|.. ...+.|++ |..+.... ...+.+-....+-.|.|.|.+.+
T Consensus 7 ~~V~L~C~~------~tsi~W~k-G~~~~~~~-~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 7 GKVFLKCNG------ATNITWKK-GKEILEVS-NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ceEEEEecC------CCcEEEec-Cccccccc-ccEEeccCcccCCCcceEecCcc
Confidence 468888954 34599999 55444332 46777777778889999998765
No 323
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.82 E-value=0.0015 Score=36.65 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=23.1
Q ss_pred CceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131 10 PRTRVLG----PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 10 ~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
.|+.... ..|.|.++..+|+|.|.|.+.+
T Consensus 60 ~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~ 92 (106)
T cd04980 60 SRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYG 92 (106)
T ss_pred CCEEEeccCCEEEEEECCCChHHCEEEEEEEeC
Confidence 4565533 4699999999999999998754
No 324
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.79 E-value=0.014 Score=32.32 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=38.8
Q ss_pred EecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc------------ceeeEEEccCCCCCCc-eEEEEEEeC
Q psy11131 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------------SSTSLVINPVGREDRG-IYQCIARRS 126 (150)
Q Consensus 66 ~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------------~~~~l~~~~~~~~~~g-~y~C~~~~~ 126 (150)
+.+|..+.+.|.+. .|.. ...+.|++....+.... ....++|... .+|.| .|.|.+.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~-~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFD-RLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCC-ceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 47899999999998 6611 47889987554322111 1345666654 66666 799998743
No 325
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.69 E-value=0.012 Score=33.75 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=36.8
Q ss_pred ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCc------------c---eeeEEEccCCCCC-CceEEEEEEeCCC
Q psy11131 67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT------------S---STSLVINPVGRED-RGIYQCIARRSDG 128 (150)
Q Consensus 67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~------------~---~~~l~~~~~~~~~-~g~y~C~~~~~~g 128 (150)
..+..+.|.|.+. +|. ...+.|.+++..+.... . .+.|.+....-.+ ...|.|.+.....
T Consensus 16 ~~~~~~tL~Cla~gFyP~--~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 16 RNKRKATLVCLATGFYPD--HVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred ccCCCcEEEEEEEeEeCC--CcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 3456789999998 662 36999999886643221 0 2334433322223 4579999986543
No 326
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.62 E-value=0.0043 Score=36.12 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=40.9
Q ss_pred ecCCcEEEEEEec--CC-CCCCcEEEEeecCcccCCCcc---------------------eeeEEEccCCCCCCceEEEE
Q psy11131 67 HLDGSANFQCEIT--PY-DSGPYLIAWFKDGRQIPGRTS---------------------STSLVINPVGREDRGIYQCI 122 (150)
Q Consensus 67 ~~g~~~~l~C~~~--~p-~~~~~~~~w~~~~~~~~~~~~---------------------~~~l~~~~~~~~~~g~y~C~ 122 (150)
.-.+++.|+|.+. .. .-....+.|..++..+-.... .++|.+.....- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 4578899999986 22 111567999877654321110 234666654433 7999999
Q ss_pred EEeCCCCceeeeEEEEEc
Q psy11131 123 ARRSDGDVAQGSAELQLG 140 (150)
Q Consensus 123 ~~~~~g~~~~~~~~l~v~ 140 (150)
+..... ..+..+.|...
T Consensus 104 Vt~~~~-ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSR-EGETTIELKYR 120 (130)
T ss_dssp EEETTE-EEEEEEEEEE-
T ss_pred EEecCC-CceEEEEEEEE
Confidence 997766 56777777663
No 327
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.58 E-value=0.046 Score=30.25 Aligned_cols=56 Identities=13% Similarity=0.229 Sum_probs=34.7
Q ss_pred ecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 67 HLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 67 ~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
..+..+.|.|.+. .|. ...+.|.++|..+..... .+.|.+..-. ....|.|.+...
T Consensus 14 ~~~~~~tL~C~a~gFyP~--~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 14 EKQGQGIYLCLLENFFPD--VIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred ccCCCEEEEEEEEEEeCC--CeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 3456789999998 663 678999999876532211 2233333221 233599999864
No 328
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.46 E-value=0.0027 Score=36.27 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131 9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
++|+.+.. .+|.|.++..+|+|.|.|.+..
T Consensus 58 ~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 58 KGRYSVNFQKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred CCeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 36776641 4799999999999999998874
No 329
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.42 E-value=0.025 Score=31.49 Aligned_cols=61 Identities=16% Similarity=0.338 Sum_probs=35.9
Q ss_pred EecCCcEEEEEEec--C-CCCCCcEEEEeecCcccC-------CCcc----eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 66 VHLDGSANFQCEIT--P-YDSGPYLIAWFKDGRQIP-------GRTS----STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 66 ~~~g~~~~l~C~~~--~-p~~~~~~~~w~~~~~~~~-------~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
...+..+.|.|.+. + |. ...+.|.+++..-. .... .+.|.+..-.-.....|.|.|.....
T Consensus 16 l~~~~~atLtClV~~f~~P~--~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPE--GAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCC--CeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44577899999998 5 63 57899998875310 0000 23333332111233459999987654
No 330
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.42 E-value=0.0035 Score=35.18 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCceEEeC----CeEEEcCCCCCCCeEEEEEecc
Q psy11131 9 GPRTRVLG----PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 9 ~~~~~~~~----~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
..|+.... ..|.|.++..+|+|.|.|.+..
T Consensus 57 ~~rf~~~~~~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 57 SKRFSGSRSSNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CceEEEEecCCEEEEEECCCCHHHCEEEEEEEcc
Confidence 34565433 4699999999999999998653
No 331
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.33 E-value=0.059 Score=29.73 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.5
Q ss_pred cCCcEEEEEEec--CCCCCCcEEEEeecCcc
Q psy11131 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQ 96 (150)
Q Consensus 68 ~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~ 96 (150)
.++.+.|.|.+. .|. ...+.|.+++..
T Consensus 15 ~~~~~~L~C~a~gFyP~--~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPE--PVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECC--CcEEEEeECCEE
Confidence 456789999998 553 678999999875
No 332
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.31 E-value=0.028 Score=30.41 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=27.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
.+|.+..+...|+|.++|.+..........+.+.|.
T Consensus 51 ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 51 KTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred cEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 678999999999999999987653334455555554
No 333
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.30 E-value=0.024 Score=31.72 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=30.0
Q ss_pred CceEEeC--CeEEEcCCCCCCCeEEEEEeccCCccee-EEEEEEE
Q psy11131 10 PRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQV 51 (150)
Q Consensus 10 ~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v 51 (150)
.|+.++. ..|.|..+...|+|.|.-++.+..|... ..+.+.|
T Consensus 62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4555555 7899999999999999999999877753 3455444
No 334
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.21 E-value=0.0034 Score=35.82 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=23.7
Q ss_pred CCceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131 9 GPRTRVLG------PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 9 ~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
..|+.+.. ..|.|.+++.+|+|.|.|.+..
T Consensus 63 ~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 63 KNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence 35666542 4699999999999999998764
No 335
>KOG1480|consensus
Probab=96.19 E-value=0.0042 Score=46.02 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=58.6
Q ss_pred eCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEeecCcccCCCcc-----eeeEEEccCCCCCCceEEEEEEeCCCCce
Q psy11131 59 VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-----STSLVINPVGREDRGIYQCIARRSDGDVA 131 (150)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~~~~~~~~-----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~ 131 (150)
..+....+.++..+.+.|... .| ...+.|++++..+..... ...+.+..+...|.|.|+|.+.|..+...
T Consensus 134 ~~p~~q~V~~~s~~~l~cr~pe~~p---aae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 134 QSPVGQEVQEETTLQLPCRPPEGDP---KAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred cChhhheecccccccccccCcccch---hhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcccc
Confidence 344555677788889999887 66 778999999877665332 56788888899999999999999876445
Q ss_pred eeeEEEEEc
Q psy11131 132 QGSAELQLG 140 (150)
Q Consensus 132 ~~~~~l~v~ 140 (150)
..++.+.+.
T Consensus 211 ~~~~~v~vy 219 (909)
T KOG1480|consen 211 SDPATVQVY 219 (909)
T ss_pred ccceEEEEE
Confidence 555555443
No 336
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.16 E-value=0.26 Score=34.36 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=42.6
Q ss_pred EEecCCcEEEEEEec-CCCCCCcEEEEeecCcccCC-------------------------------CcceeeEEEccCC
Q psy11131 65 SVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPG-------------------------------RTSSTSLVINPVG 112 (150)
Q Consensus 65 ~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~~~-------------------------------~~~~~~l~~~~~~ 112 (150)
.+..|.++.+.|... ........+.|..-+-.+.+ +...++|+|..+.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 456699999999987 33222677888654322110 0004789999999
Q ss_pred CCCCceEEEEEEeC
Q psy11131 113 REDRGIYQCIARRS 126 (150)
Q Consensus 113 ~~~~g~y~C~~~~~ 126 (150)
.+..|=|.|.+...
T Consensus 355 I~N~GCY~~~a~~g 368 (500)
T PHA02914 355 INNAGCYEAQAFMG 368 (500)
T ss_pred EEcCCceEEEEecC
Confidence 99999999999854
No 337
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.09 E-value=0.29 Score=34.31 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=53.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEe-cCceEEeCCCcEEEecCCcEEEEEEec--CCCCCCcEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVS-TPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWF 91 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~~~l~C~~~--~p~~~~~~~~w~ 91 (150)
-.|.|.++-..|.|.|+-...+.... ......+.+. .+|.+.+.+. .+..|+.-...|.+. +|.. ...+.|+
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~-SvrlrWf 283 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPG-SVYVSWR 283 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCC-ceEEEEE
Confidence 56899999999999775555443222 2333444443 3444555444 467899999999998 5533 6799999
Q ss_pred ecCcccC
Q psy11131 92 KDGRQIP 98 (150)
Q Consensus 92 ~~~~~~~ 98 (150)
.+|....
T Consensus 284 ~nG~~V~ 290 (490)
T PHA03271 284 QNGNIAT 290 (490)
T ss_pred eCCcccc
Confidence 9886543
No 338
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.05 E-value=0.028 Score=29.87 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=19.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIG 40 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~ 40 (150)
+.|.|......|.|.|+|.+.+..
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCcc
Confidence 567888877888899999998864
No 339
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.04 E-value=0.11 Score=28.85 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=39.0
Q ss_pred EEEecCCcEEE-EEEec--CCCCCCcEEEEeecCcccCCC------c-c---eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 64 LSVHLDGSANF-QCEIT--PYDSGPYLIAWFKDGRQIPGR------T-S---STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 64 ~~~~~g~~~~l-~C~~~--~p~~~~~~~~w~~~~~~~~~~------~-~---~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
..+.+|..+.+ .|.+. .| .+.+.|+.+....... . . .+.+.+......|.-.+.|.+....-
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkP---aa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRP---AADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eEeecCcceeEEEEEccCCcc---CCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 34566777777 88887 78 9999999763221100 0 1 34555544445555679999987643
No 340
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.03 E-value=0.019 Score=33.96 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.4
Q ss_pred eeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 104 TSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 104 ~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
++|.|.++...|+|.|.|.+.+..+
T Consensus 1 asL~i~~v~~~D~G~Y~C~~~~~~~ 25 (139)
T cd05771 1 ASLTLPGLTVHDEGTYICSVSTPPH 25 (139)
T ss_pred CeEEECCCCHHHCEEEEEEEEccCc
Confidence 3689999999999999999998777
No 341
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.99 E-value=0.032 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=22.7
Q ss_pred EEEecCCcEEEEEEec-C--CCCCCcEEEEeecCc
Q psy11131 64 LSVHLDGSANFQCEIT-P--YDSGPYLIAWFKDGR 95 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~--p~~~~~~~~w~~~~~ 95 (150)
..+..++.+.|.|.+. . |. ...+.|.++++
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~--~i~v~W~r~~~ 41 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPE--GVNVTWTRGSG 41 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCC--CcEEEEEECCe
Confidence 3455678899999998 6 42 56889999863
No 342
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.97 E-value=0.0059 Score=34.39 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCeEEEEEecc
Q psy11131 18 ILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 18 ~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
.|+|.++..+|+|.|.|....
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcC
Confidence 599999999999999998753
No 343
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.86 E-value=0.012 Score=38.20 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=27.7
Q ss_pred cCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 6 VLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 6 ~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
+....++.++. +.|.+.+...+++|.|+|.....
T Consensus 25 l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 25 LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 34455677777 89999999999999999987653
No 344
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=95.74 E-value=0.019 Score=30.57 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=22.7
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~ 42 (150)
+.|.|.....+|.+.|+|++.|..+.
T Consensus 43 s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 43 NTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEEeeeccCCcEEEEEEEChhhC
Confidence 67999999999999999999997543
No 345
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=95.73 E-value=0.018 Score=31.61 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.9
Q ss_pred CeEEEcCCCCCCCeEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSS 37 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~ 37 (150)
..+.|.+++.+|+|.|.|...
T Consensus 55 a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 55 ASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEecCCCcccCEEEEEEEE
Confidence 568999999999999999864
No 346
>PHA03042 CD47-like protein; Provisional
Probab=95.66 E-value=0.11 Score=34.12 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=43.9
Q ss_pred ecCCcEEEEEEecCC---CCCCcEEEEeecCcccCCCc--ceeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 67 HLDGSANFQCEITPY---DSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 67 ~~g~~~~l~C~~~~p---~~~~~~~~w~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
.-.+++.++|....+ .-....+.|..++..+-..+ ..++|.+..... -.|.|+|++.+... ....+..++-
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~~-l~GNYTCEv~~l~n-~gk~~IeLk~ 104 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSKN-LSGNYTCEAINKFN-KIKNTIELQY 104 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEecccc-CCCceeEEEeeccc-CccEEEEEEE
Confidence 356889999998721 11156799988876543222 134565554332 36999999997655 3455555543
No 347
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.44 E-value=0.038 Score=27.35 Aligned_cols=24 Identities=54% Similarity=0.794 Sum_probs=21.4
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIG 40 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~ 40 (150)
..|.|.++...|.|.|.|.+.+..
T Consensus 43 ~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 43 STLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEECccCcccCcEEEEEEecCc
Confidence 679999999999999999988754
No 348
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.29 E-value=0.038 Score=36.01 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=30.9
Q ss_pred CcEEEEeecCcccCCCc-c-----eeeEEEccCCCCCCceEEEEEEe
Q psy11131 85 PYLIAWFKDGRQIPGRT-S-----STSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 85 ~~~~~w~~~~~~~~~~~-~-----~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
.|.+.|...+.....+. . ...|++.+....++|.|+|...-
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEE
Confidence 67899987544333232 1 56799999999999999999874
No 349
>PHA03052 Hypothetical protein; Provisional
Probab=95.25 E-value=0.1 Score=26.55 Aligned_cols=37 Identities=14% Similarity=0.334 Sum_probs=29.4
Q ss_pred CCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCccc
Q psy11131 61 PPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQI 97 (150)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~~ 97 (150)
|....+..|+.+.+.|++. .++.+.+.+.|..|+...
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 3556778899999999999 664446788898888776
No 350
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=94.93 E-value=0.34 Score=27.74 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=38.0
Q ss_pred cEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc-ccC--------------CCcc----------eeeEEEccCCCCCC
Q psy11131 63 LLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR-QIP--------------GRTS----------STSLVINPVGREDR 116 (150)
Q Consensus 63 ~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~-~~~--------------~~~~----------~~~l~~~~~~~~~~ 116 (150)
...+..|..+.|.|... .--...-.+.|.+... .+. ...+ ...|.+.++..+|.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 34566777899999885 2200025777766321 100 0000 45788899999999
Q ss_pred ceEEEEEE
Q psy11131 117 GIYQCIAR 124 (150)
Q Consensus 117 g~y~C~~~ 124 (150)
+.|.|...
T Consensus 87 a~Y~Ca~e 94 (115)
T cd05721 87 DIYFCKIE 94 (115)
T ss_pred eEEEEEee
Confidence 99999753
No 351
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.89 E-value=0.02 Score=32.87 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=22.7
Q ss_pred CceEEeC------CeEEEcCCCCCCCeEEEEEecc
Q psy11131 10 PRTRVLG------PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 10 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
.|+.... ..|.|.++..+|+|.|.|....
T Consensus 63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 63 GRFTITRDTSKSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CcEEEEEEccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence 4666542 2699999999999999997654
No 352
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.57 E-value=0.19 Score=28.25 Aligned_cols=37 Identities=19% Similarity=0.375 Sum_probs=28.4
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEE
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v 139 (150)
...|.|..+...|+|.|..++++..|......+.+.|
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 5689999999999999999999999855555555555
No 353
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=94.30 E-value=0.45 Score=26.05 Aligned_cols=82 Identities=20% Similarity=0.264 Sum_probs=48.6
Q ss_pred EEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeec--CcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCCceee
Q psy11131 57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD--GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQG 133 (150)
Q Consensus 57 ~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~--~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~ 133 (150)
+.+.|....+..|+.+.++|... .. +....|.-. ...+.....=..+.+.++.. | ....|.+.= .|.+...
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~---p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C-~g~Q~~~ 79 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQ---PEKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNC-SGEQSSA 79 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS----SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEE-TTEEEEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCC---CCcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEc-CCeEEEe
Confidence 34456777888999999999998 33 334455321 11111111123566677765 3 466788774 4556788
Q ss_pred eEEEEEcCcCc
Q psy11131 134 SAELQLGGTRN 144 (150)
Q Consensus 134 ~~~l~v~~~p~ 144 (150)
++.++|..+|.
T Consensus 80 ~~~ItVY~~Pe 90 (91)
T PF03921_consen 80 SANITVYKPPE 90 (91)
T ss_dssp EEEEEEEB--S
T ss_pred EEeeEEeCCCC
Confidence 89999988875
No 354
>PHA02982 hypothetical protein; Provisional
Probab=93.96 E-value=0.26 Score=31.29 Aligned_cols=62 Identities=16% Similarity=0.387 Sum_probs=43.7
Q ss_pred EEEecCCcEEEEEEec--CCCCCCcEEEEeecCc-ccC----------C----------------CcceeeEEEccCCCC
Q psy11131 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-QIP----------G----------------RTSSTSLVINPVGRE 114 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~--~p~~~~~~~~w~~~~~-~~~----------~----------------~~~~~~l~~~~~~~~ 114 (150)
+....++.+.|.|... .. ...+.|..+.. .+. . ....++|++.++...
T Consensus 34 v~a~vd~~V~L~C~~~~~~~---i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~ 110 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADE---ISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ 110 (251)
T ss_pred hhccCCCcEEEEecCCCcch---hhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc
Confidence 4456788999999965 33 66788876432 111 0 000578999999999
Q ss_pred CCceEEEEEEeCCC
Q psy11131 115 DRGIYQCIARRSDG 128 (150)
Q Consensus 115 ~~g~y~C~~~~~~g 128 (150)
..|=|+|.+....+
T Consensus 111 N~GCYtc~~ks~~~ 124 (251)
T PHA02982 111 NLGCFTCEAKDAEG 124 (251)
T ss_pred cCCceEEEEecCCC
Confidence 99999999997655
No 355
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=93.72 E-value=1.7 Score=30.61 Aligned_cols=106 Identities=16% Similarity=0.245 Sum_probs=63.6
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEecCceEEeCCCcEEEecCC-cEEEEEEec-CCCCCCcEEEEeecC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG-SANFQCEIT-PYDSGPYLIAWFKDG 94 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~-~~~l~C~~~-~p~~~~~~~~w~~~~ 94 (150)
++|+|.++..+.+|.|.|++..+.-......=|.|.....+... .++. ...+.|-+. .. ..++.+.|..+|
T Consensus 346 STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~------~e~~n~T~V~Cyv~sy~-~kp~si~wkvnG 418 (500)
T PHA02914 346 STLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN------TEGDNETKVACYAAQYD-MQPFSILWKSNG 418 (500)
T ss_pred ceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE------eccCceEEEEEEEEecc-cCCceeEEEEcc
Confidence 78999999999999999999876544455545555544332221 1222 345678776 31 116678998776
Q ss_pred cccCCC-----c----c------eeeEEEccCCCCC-CceEEEEEEeCCCC
Q psy11131 95 RQIPGR-----T----S------STSLVINPVGRED-RGIYQCIARRSDGD 129 (150)
Q Consensus 95 ~~~~~~-----~----~------~~~l~~~~~~~~~-~g~y~C~~~~~~g~ 129 (150)
....-. . . ...+.|.+-...| .-.-.|+.....+.
T Consensus 419 V~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 419 VSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred EEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 532100 0 0 3456665554444 34567888766553
No 356
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=93.07 E-value=0.18 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=18.8
Q ss_pred CeEEEcCCCCCCCeEEEEEecc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSN 38 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~ 38 (150)
.+|.+.+....-.|.|+|.+.+
T Consensus 33 ~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 33 TLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cEEeccCcccCCCcceEecCcc
Confidence 5678888889999999998866
No 357
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=92.27 E-value=0.2 Score=28.67 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=18.0
Q ss_pred CeEEEcCCCCCCCeEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSS 36 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~ 36 (150)
-+|.|.+++.+|++.|.|..
T Consensus 74 v~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 74 VNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EEEEEcCCCHHHCeEEEEEe
Confidence 46999999999999999965
No 358
>PHA03283 envelope glycoprotein E; Provisional
Probab=90.81 E-value=5 Score=29.34 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=30.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 53 (150)
+.|+|.+++..++|.|.-...+..+.....+.|+|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 6799999999999999998887666555556677765
No 359
>KOG4597|consensus
Probab=89.45 E-value=0.91 Score=32.53 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred EEEecCCcEEEEEEec-CCCCCCcEEEEee---cCccc--CCCcc--------eeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131 64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFK---DGRQI--PGRTS--------STSLVINPVGREDRGIYQCIARRSDGD 129 (150)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~---~~~~~--~~~~~--------~~~l~~~~~~~~~~g~y~C~~~~~~g~ 129 (150)
..+.++++..+.|-.. .+ .+.+.|.+ +...+ ..... ...|.|-+....|.|-|.|.+.+..|
T Consensus 206 w~vg~wetcS~tCg~~G~q---~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g- 281 (560)
T KOG4597|consen 206 WFVGDWETCSSTCGVQGRQ---YRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG- 281 (560)
T ss_pred hhcccchhhcccccccCCc---CceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc-
Confidence 3566788899999988 77 88999965 22211 11100 45788888999999999999999998
Q ss_pred ceeeeEEEEE
Q psy11131 130 VAQGSAELQL 139 (150)
Q Consensus 130 ~~~~~~~l~v 139 (150)
...+.+.+.+
T Consensus 282 ~~~rdv~c~s 291 (560)
T KOG4597|consen 282 FLRRDVPCSS 291 (560)
T ss_pred eeeccceeee
Confidence 4555555544
No 360
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.11 E-value=2.2 Score=22.73 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=23.1
Q ss_pred CeEEEcCCCCCCCeEEEEEe-ccCCcceeEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSS-SNIGGEATAEVRLQ 50 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~ 50 (150)
..+.....+..|+|.+.|.+ .+..........|.
T Consensus 43 ~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 43 KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence 56677888999999999999 44433333333333
No 361
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=88.70 E-value=0.29 Score=28.70 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
.+|.+.....- .|+|+|++..........+.|.+.
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYR 120 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE-
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEE
Confidence 45777765444 899999998765555555555553
No 362
>PHA03282 envelope glycoprotein E; Provisional
Probab=88.22 E-value=1.9 Score=31.01 Aligned_cols=44 Identities=34% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCceEEeCCeEEEcCCCCCCCeEEEEEeccCCcc--eeEEEEEEEe
Q psy11131 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGE--ATAEVRLQVS 52 (150)
Q Consensus 9 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~ 52 (150)
++|+...+++|.|.+++.+|+|.|.-.+...... ....+.|.|.
T Consensus 116 ~~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 116 PPRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred CcceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 5788888899999999999999999986543222 2333455554
No 363
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=87.19 E-value=3.4 Score=22.55 Aligned_cols=62 Identities=19% Similarity=0.400 Sum_probs=36.9
Q ss_pred CcEEEecCCcEEEEEEec-C-C-CCCCcEEEEeecCcccCCCcc------eeeEEEccCCCCCCceEEEEE
Q psy11131 62 PLLSVHLDGSANFQCEIT-P-Y-DSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIA 123 (150)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~-~-p-~~~~~~~~w~~~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~ 123 (150)
....+..|+.+.+.|... . . ......+.|..++..++...- .+.+++.+......-.|.|..
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 334578899999999987 2 1 122678999887775544331 456666666555545566763
No 364
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=86.16 E-value=3.2 Score=22.23 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=22.8
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc-ceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG-EATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~ 52 (150)
++|.|..-...|-..|+|++.+..- .......|.|+
T Consensus 44 S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 44 SQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6677755545555599999988632 24455556554
No 365
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=85.92 E-value=2.6 Score=25.81 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG 41 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 41 (150)
--|.|.+.+++|+|.|.-.+.-...
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~ 148 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGA 148 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCC
Confidence 3489999999999999998876543
No 366
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=80.71 E-value=6.7 Score=20.90 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.1
Q ss_pred CcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEE
Q psy11131 85 PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124 (150)
Q Consensus 85 ~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~ 124 (150)
.+...|...+...... ............|.|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~~~~--~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKSLET--KKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEEEEE--SSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCcccccc--ceEEEEecCCCCCCEEEEEEEc
Confidence 4566665544433211 3355566677889999999995
No 367
>KOG1480|consensus
Probab=78.97 E-value=1.9 Score=32.97 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=23.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~ 42 (150)
+.|.+..+..+|+|+|+|++.|..+.
T Consensus 183 ~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 183 HNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred CCccccchhhhhcccceeeeehhhcc
Confidence 88999999999999999999986543
No 368
>PHA03282 envelope glycoprotein E; Provisional
Probab=78.84 E-value=5.6 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=23.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEV 47 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 47 (150)
-.|+|.|+..+++|.|.|.+... |...+-.
T Consensus 333 VdL~F~nAp~saSGLYVfVl~yN-GHVeAW~ 362 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVYVN-GHVHAWG 362 (540)
T ss_pred cceEecCCCcccCceEEEEEEEC-CeeeeeE
Confidence 47999999999999999988753 4444433
No 369
>PHA03286 envelope glycoprotein E; Provisional
Probab=76.35 E-value=7.6 Score=27.97 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 48 (150)
.+|.+.|+..+++|.|.|.+... |...+...
T Consensus 307 ~nL~f~nA~~s~SGLYVfVl~yN-GH~eAWtY 337 (492)
T PHA03286 307 PSFRLANAQPTDAGLYVVVALYN-GRPLAWTY 337 (492)
T ss_pred CceeecCCCcccCceEEEEEEEC-CcceeeeE
Confidence 47999999999999999998753 44444444
No 370
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=75.96 E-value=17 Score=22.79 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=32.7
Q ss_pred EEEec--CCCCCCcEEEEeecCcccCCCcc---------------eeeEEEccCCCCCCceEEEEEEeC
Q psy11131 75 QCEIT--PYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIARRS 126 (150)
Q Consensus 75 ~C~~~--~p~~~~~~~~w~~~~~~~~~~~~---------------~~~l~~~~~~~~~~g~y~C~~~~~ 126 (150)
.|... .. .|.++|......+..+.. .+.+.+......+.-.|.|.+...
T Consensus 113 vCitseL~s---~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 113 VCITSELVS---QPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred EEeeccccC---CCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEeccccc
Confidence 46665 44 789999765544433321 456677777777888899998743
No 371
>PHA02982 hypothetical protein; Provisional
Probab=73.23 E-value=22 Score=23.00 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEe-cCceEEeCCCcEEEecCC-cEEEEEEec-CCCCCCcEEEEee
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVS-TPYRVDVNPPLLSVHLDG-SANFQCEIT-PYDSGPYLIAWFK 92 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~-~~~~~~~~~~~~~~~~g~-~~~l~C~~~-~p~~~~~~~~w~~ 92 (150)
++|+|.++..+..|.|+|++..+.+. .....=|.|+ ....+ ...++. ...+.|-+. .. .+...|..
T Consensus 100 STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-------~W~e~nNeT~V~CyVgS~~---~dvp~W~V 169 (251)
T PHA02982 100 STFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY-------VVEEHNNETIITCFVGSKH---GDVPRFIV 169 (251)
T ss_pred eeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE-------EEEecCCeEEEEEEEEecc---CCCccEEE
Confidence 78999999999999999999886544 3444445553 21111 112222 245678776 33 22227866
Q ss_pred cCc
Q psy11131 93 DGR 95 (150)
Q Consensus 93 ~~~ 95 (150)
+|.
T Consensus 170 ~GV 172 (251)
T PHA02982 170 AGI 172 (251)
T ss_pred eeE
Confidence 554
No 372
>PHA03289 envelope glycoprotein I; Provisional
Probab=72.59 E-value=12 Score=25.66 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~ 42 (150)
--|.|.+.++.|+|.|.-.+.-....
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~ 147 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRN 147 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCc
Confidence 35899999999999999998865433
No 373
>PHA03290 envelope glycoprotein I; Provisional
Probab=72.49 E-value=12 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=21.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGG 41 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~ 41 (150)
-.|.|.+.+.+|+|.|.-.+.-...
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHS 153 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC
Confidence 4589999999999999999876533
No 374
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=71.92 E-value=14 Score=26.83 Aligned_cols=39 Identities=21% Similarity=0.093 Sum_probs=23.9
Q ss_pred CCceEEeC--CeEEEcCCCCCCCeEEEEEeccCCcceeEEEE
Q psy11131 9 GPRTRVLG--PILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48 (150)
Q Consensus 9 ~~~~~~~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 48 (150)
...+++.. -.|++.|+..+++|.|.|.+... |...+-..
T Consensus 259 ~~~~~~~~~~~~l~f~~a~~~~sGLYv~V~~~n-ghv~aW~y 299 (439)
T PF02480_consen 259 VPGLRWASNGVDLQFTNAPESASGLYVFVVYYN-GHVEAWTY 299 (439)
T ss_dssp -TTEEE-TTSSSEEESS--GGG-EEEEEEEEET-TEEEEEEE
T ss_pred CccccccCCCcceEecCCCcccCceEEEEEEEC-CeeeeeEE
Confidence 34445544 57999999999999999988754 44444433
No 375
>KOG4597|consensus
Probab=71.52 E-value=4.8 Score=29.15 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=30.9
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
..|.|-|....|+|.|+|.+.+..|.....+.+.+.
T Consensus 257 cql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 257 CQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSSV 292 (560)
T ss_pred eeEEEcchhhcCCCceeeccccccceeeccceeeee
Confidence 679999999999999999999988887777666654
No 376
>PHA03292 envelope glycoprotein I; Provisional
Probab=70.90 E-value=12 Score=26.40 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.7
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~ 42 (150)
..|.|.+.++.|+|.|.-.+.-....
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~ 153 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAP 153 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCc
Confidence 46899999999999999998865433
No 377
>PHA03189 UL14 tegument protein; Provisional
Probab=67.33 E-value=12 Score=25.56 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCCCCCCeEEEEEeccCCcc
Q psy11131 23 GVTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 23 ~~~~~d~G~Y~C~~~~~~~~ 42 (150)
++..+.+|.|.|...|....
T Consensus 139 ~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred EEEecccceEEEEeccccce
Confidence 67788899999999986433
No 378
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=65.33 E-value=1.2e+02 Score=28.14 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=50.3
Q ss_pred CCCCCCeEEEEE--eccCCcceeEEEEEEEecCc-eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCc
Q psy11131 24 VTAEDSGTYRCS--SSNIGGEATAEVRLQVSTPY-RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGR 95 (150)
Q Consensus 24 ~~~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~ 95 (150)
.+..+.|.|.-. +.|..+.......+.|+++. .+.+.........|+.+.+.+... .+ ...+.|...+.
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS---~Vtf~w~fGdg 1906 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGS---AVNFRLQIGGA 1906 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCC---ceEEEEEeCCC
Confidence 457788999886 45777777778888888765 344445555677899999998887 66 77888876543
No 379
>PHA03283 envelope glycoprotein E; Provisional
Probab=64.20 E-value=19 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=20.3
Q ss_pred CeEEEcCCCCCCCeEEEEEeccC
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNI 39 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~ 39 (150)
-.|.+.|+..+++|.|.|.+...
T Consensus 315 v~L~f~nap~~~SGLYVfVv~yN 337 (542)
T PHA03283 315 VDLLFKNAPASASGLYVFVLLYN 337 (542)
T ss_pred cceEeccCCcccCceEEEEEEEC
Confidence 57999999999999999988753
No 380
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=62.80 E-value=49 Score=23.21 Aligned_cols=21 Identities=10% Similarity=0.407 Sum_probs=17.3
Q ss_pred cEEEEEEec--CCCCCCcEEEEeec
Q psy11131 71 SANFQCEIT--PYDSGPYLIAWFKD 93 (150)
Q Consensus 71 ~~~l~C~~~--~p~~~~~~~~w~~~ 93 (150)
.+.|.|.+. +|. ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~--~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPS--SVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCC--ccEEEEEec
Confidence 478999998 664 678899988
No 381
>PHA03291 envelope glycoprotein I; Provisional
Probab=56.08 E-value=34 Score=23.99 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=26.0
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
--|.|.+....|+|.|.-.+.-.......-+.|.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 458999999999999999988654443334444444
No 382
>PHA03281 envelope glycoprotein E; Provisional
Probab=55.83 E-value=33 Score=25.69 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=23.5
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 48 (150)
..|.+.++..+++|.|.|.+... |...+...
T Consensus 475 vdL~F~nApasaSGLYVfVl~yN-GHVeAWtY 505 (642)
T PHA03281 475 SALKFVDAAESLSGLYVFIIHFN-GHVEAVAY 505 (642)
T ss_pred cceEeccCCcccCceEEEEEEEC-CeeeeeEE
Confidence 56999999999999999998753 44444333
No 383
>PHA03286 envelope glycoprotein E; Provisional
Probab=53.03 E-value=66 Score=23.58 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=28.2
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEe
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVS 52 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~ 52 (150)
..|+|.|++...+|.|+-...++.+.. ...+.|.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 679999999999999999888875553 344556664
No 384
>KOG0613|consensus
Probab=52.82 E-value=84 Score=26.27 Aligned_cols=110 Identities=12% Similarity=0.104 Sum_probs=63.1
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcceeEEEEEEEec------C----------ceEE---eCCCcEEEecCCcEEEEEE
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST------P----------YRVD---VNPPLLSVHLDGSANFQCE 77 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~------~----------~~~~---~~~~~~~~~~g~~~~l~C~ 77 (150)
....|.+....+.+.|+|...+..+.......-.+.. + +... .....+....+..+.+.|.
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 4567777788888889888777655443332222221 0 1000 0111223344556788888
Q ss_pred ec-CCCCCCcEEEEeecCcccCCCcc----------eeeEEEccCCCCCCceEEEEEEeCCC
Q psy11131 78 IT-PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG 128 (150)
Q Consensus 78 ~~-~p~~~~~~~~w~~~~~~~~~~~~----------~~~l~~~~~~~~~~g~y~C~~~~~~g 128 (150)
.. .+. +..+.|++.......... ...+.+..+...+.+.|.|.+.|..|
T Consensus 358 ~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g 417 (1205)
T KOG0613|consen 358 LSGTQK--PDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGG 417 (1205)
T ss_pred ccCCcC--CchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCC
Confidence 77 440 345888876543222210 33555666677778889999999887
No 385
>PHA02935 Hypothetical protein; Provisional
Probab=52.76 E-value=46 Score=21.33 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=24.7
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcce-eEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~ 53 (150)
.-|.|+.++-+|+|.|.-......|.. .....+.|.+
T Consensus 102 tclnisslryedsgsykgvshlkdgvivtttmnisvka 139 (349)
T PHA02935 102 TCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKA 139 (349)
T ss_pred EEeeccceeeccCCcccCchhhcCceEEEEEEEEEEEe
Confidence 346788889999999988776655543 3334444543
No 386
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=47.14 E-value=41 Score=17.30 Aligned_cols=43 Identities=16% Similarity=0.498 Sum_probs=24.6
Q ss_pred EEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEe
Q psy11131 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 74 l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
|.|... - ...+.|+.++..+-.-. ...+.+..+ .+.|.|.-++
T Consensus 3 ltC~s~-~---sLPiswYcN~TRLlRlt-~~Tlt~~~l----tcNFtCV~qS 45 (71)
T PF11049_consen 3 LTCPSN-A---SLPISWYCNGTRLLRLT-QQTLTVVTL----TCNFTCVGQS 45 (71)
T ss_pred eecCCC-C---CCcccEEECCceeeeec-CCeEeeeee----eEEeeecCCC
Confidence 456553 1 34578999988764332 234444332 3678887553
No 387
>PHA03281 envelope glycoprotein E; Provisional
Probab=44.13 E-value=1.4e+02 Score=22.66 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=27.8
Q ss_pred CeEEEcCCCCCCCeEEEEEeccCCcc-eeEEEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVST 53 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~ 53 (150)
+.|+|.+++...+|.|+--.....|. ....+-|+|..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 67999999999999999877755443 34456666764
No 388
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=43.73 E-value=7.7 Score=28.04 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=0.0
Q ss_pred eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEEEEcCc
Q psy11131 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGT 142 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l~v~~~ 142 (150)
...|.|.+++..|+|.|+-...+..+......+.+.|..+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~ 127 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGP 127 (439)
T ss_dssp ----------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCC
Confidence 4578999999999999999998776655555666666553
No 389
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=41.95 E-value=3e+02 Score=25.88 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=60.5
Q ss_pred CCCCeEEEEE--eccCCcceeEEEEEEEecCc-eEEeCCCcEEEecCCcEEEEEEec-CCCCCCcEEEEeecCcc-cCCC
Q psy11131 26 AEDSGTYRCS--SSNIGGEATAEVRLQVSTPY-RVDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQ-IPGR 100 (150)
Q Consensus 26 ~~d~G~Y~C~--~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~~~~g~~~~l~C~~~-~p~~~~~~~~w~~~~~~-~~~~ 100 (150)
..+.|.|.-. +.|..|.......+.|.++. .+.+......+..|..+.+.-... .. ...+.|...+.. ....
T Consensus 1666 ~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS---~vty~W~~gdG~s~~~s 1742 (2740)
T TIGR00864 1666 PLEAGPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGS---GLQYRWFLEEGDDLETS 1742 (2740)
T ss_pred cCCCceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCC---CcEEEEEECCCCCcccC
Confidence 4566777775 44667777777777776532 222332333456688888776555 55 788999865532 2111
Q ss_pred cceeeEEEccCCCCCCceEEE--EEEeCCCCceeeeEEEEEcCc
Q psy11131 101 TSSTSLVINPVGREDRGIYQC--IARRSDGDVAQGSAELQLGGT 142 (150)
Q Consensus 101 ~~~~~l~~~~~~~~~~g~y~C--~~~~~~g~~~~~~~~l~v~~~ 142 (150)
. ..+. -.....|.|.- .+.|..| ....+..+.|+.+
T Consensus 1743 ~--p~~t---Htf~~~G~y~VtVta~N~vs-s~~~s~~V~Vqep 1780 (2740)
T TIGR00864 1743 E--PFMS---HSFPSAGLHLVTMKAFNELG-SANASEEVDVQEP 1780 (2740)
T ss_pred C--CceE---EEccCCceEEEEEEEEcccc-ccceeEEEEEEec
Confidence 1 1111 12334577664 4567777 4555666666554
No 390
>PF06938 DUF1285: Protein of unknown function (DUF1285); InterPro: IPR010707 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.; PDB: 2RA9_A 2RE3_B.
Probab=40.51 E-value=7 Score=23.64 Aligned_cols=12 Identities=42% Similarity=1.104 Sum_probs=6.2
Q ss_pred EEeecCcccCCC
Q psy11131 89 AWFKDGRQIPGR 100 (150)
Q Consensus 89 ~w~~~~~~~~~~ 100 (150)
.|++.|..+...
T Consensus 8 ~W~h~G~pI~R~ 19 (148)
T PF06938_consen 8 RWFHEGSPIPRP 19 (148)
T ss_dssp -EEETTEE---H
T ss_pred cEEECCcCcCcH
Confidence 588888877543
No 391
>PF15096 G6B: G6B family
Probab=39.33 E-value=31 Score=21.76 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=17.9
Q ss_pred CCCCCCeEEEEEeccCCcceeEEEEEEEe
Q psy11131 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVS 52 (150)
Q Consensus 24 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 52 (150)
+...|+|.|.|+.... ....+.|+|.
T Consensus 81 Ls~GDSGTFfCkGr~e---~ESRT~LhVL 106 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQE---EESRTVLHVL 106 (224)
T ss_pred hhcCCccceEecCccc---ccceeeeeee
Confidence 3578999999985433 3445567776
No 392
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=39.21 E-value=64 Score=17.26 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=33.0
Q ss_pred cEEEEEEecCCCCCCcEEEEeecCcccCCCcceeeEEEccCCCCCCceEEEEEEeCCCC
Q psy11131 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129 (150)
Q Consensus 71 ~~~l~C~~~~p~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~g~ 129 (150)
...|.+.+... ...+.|+-++..+........+.... ...|.|...+....|.
T Consensus 31 ~~~l~l~a~~~---~~~~~W~vdg~~~g~~~~~~~~~~~~---~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 31 RQPLVLKAAGG---RGPVYWFVDGEPLGTTQPGHQLFWQP---DRPGEHTLTVVDAQGR 83 (89)
T ss_pred cceEEEEEeCC---CCcEEEEECCEEcccCCCCCeEEeCC---CCCeeEEEEEEcCCCC
Confidence 34444444422 34899999999884333333343332 4578999999888884
No 393
>PHA03240 envelope glycoprotein M; Provisional
Probab=38.05 E-value=18 Score=23.41 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.9
Q ss_pred eCCeEEEcCCCCCCCeEEEEEe
Q psy11131 15 LGPILAIEGVTAEDSGTYRCSS 36 (150)
Q Consensus 15 ~~~~l~i~~~~~~d~G~Y~C~~ 36 (150)
.+.+|.|.++..+|.|+|.=..
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k 124 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKK 124 (258)
T ss_pred ccceEEEEEEeecCcchhhhcc
Confidence 3488999999999999995443
No 394
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=36.72 E-value=80 Score=17.69 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=34.5
Q ss_pred EEEEEEec--CCCCCCcEEEEeec--Ccc----cCCCcc----eeeEEEccCCCCCCceEEEEEEeCCCCceeeeEEE
Q psy11131 72 ANFQCEIT--PYDSGPYLIAWFKD--GRQ----IPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137 (150)
Q Consensus 72 ~~l~C~~~--~p~~~~~~~~w~~~--~~~----~~~~~~----~~~l~~~~~~~~~~g~y~C~~~~~~g~~~~~~~~l 137 (150)
+...|-+. .| +..+.|..+ |.. ...... .+.+.+-.....|.-..+|.+..... .....+.|
T Consensus 23 ~VA~CiSa~GrP---pa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~-~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKP---PSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRND-RFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcC---CcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccc-cccccEEe
Confidence 45679866 78 899999743 321 011110 33444444555566679999986533 33444444
No 395
>PHA03290 envelope glycoprotein I; Provisional
Probab=36.38 E-value=1.3e+02 Score=21.10 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.2
Q ss_pred eeeEEEccCCCCCCceEEEEEEe
Q psy11131 103 STSLVINPVGREDRGIYQCIARR 125 (150)
Q Consensus 103 ~~~l~~~~~~~~~~g~y~C~~~~ 125 (150)
..-|.+.+...+|+|.|..+++-
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~L 150 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQL 150 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEe
Confidence 56788999999999999999984
No 396
>COG5475 Uncharacterized small protein [Function unknown]
Probab=31.04 E-value=62 Score=15.97 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=11.8
Q ss_pred CceEEEEEEeCCCC
Q psy11131 116 RGIYQCIARRSDGD 129 (150)
Q Consensus 116 ~g~y~C~~~~~~g~ 129 (150)
.|-|.|...+..|.
T Consensus 28 ~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 28 DGMYECRWFDGYGV 41 (60)
T ss_pred CCeEEEEEecCCCc
Confidence 38999999998883
No 397
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=30.49 E-value=1.6e+02 Score=19.24 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=14.3
Q ss_pred EEEEEec-CCCCCCcEEEEeecCcc
Q psy11131 73 NFQCEIT-PYDSGPYLIAWFKDGRQ 96 (150)
Q Consensus 73 ~l~C~~~-~p~~~~~~~~w~~~~~~ 96 (150)
...|.+. -|.+ ...+.|.-++..
T Consensus 93 ~AVC~A~CVP~~-~v~l~W~v~d~~ 116 (211)
T PF02124_consen 93 YAVCTARCVPRG-NVTLRWSVGDDP 116 (211)
T ss_pred EEEEEcceeeCC-CeEEEEEECCcc
Confidence 3457777 5521 478999866543
No 398
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=29.30 E-value=30 Score=15.26 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=7.8
Q ss_pred CCCCeEEEEE
Q psy11131 26 AEDSGTYRCS 35 (150)
Q Consensus 26 ~~d~G~Y~C~ 35 (150)
..+.|.|+|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 4678999993
No 399
>PF11088 RL11D: Glycoprotein encoding membrane proteins RL5A and RL6; InterPro: IPR024349 This entry represents RL5A and RL6 from human herpesvirus 5. RL5A and RL6 are members of the RL11 family, which are predicted to encode membrane glycoproteins [].
Probab=25.77 E-value=1.3e+02 Score=16.76 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=15.9
Q ss_pred CeEEEcCCCCCCCeEEEEEec
Q psy11131 17 PILAIEGVTAEDSGTYRCSSS 37 (150)
Q Consensus 17 ~~l~i~~~~~~d~G~Y~C~~~ 37 (150)
.+|.|.|++..+.|.|--.-.
T Consensus 60 tsL~lCN~T~g~eg~ydl~r~ 80 (98)
T PF11088_consen 60 TSLTLCNMTQGNEGVYDLGRR 80 (98)
T ss_pred CcEEEEeeeccCcccEeeeee
Confidence 578888888888888877543
No 400
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=25.09 E-value=66 Score=15.63 Aligned_cols=19 Identities=21% Similarity=0.618 Sum_probs=13.0
Q ss_pred CCCCCCeEEEEEeccCCcc
Q psy11131 24 VTAEDSGTYRCSSSNIGGE 42 (150)
Q Consensus 24 ~~~~d~G~Y~C~~~~~~~~ 42 (150)
+-...+..|.|.+.|..|.
T Consensus 5 ilkdssnsflctvqnkng~ 23 (65)
T PF13220_consen 5 ILKDSSNSFLCTVQNKNGD 23 (65)
T ss_pred eeecCCCceEEEEecccHh
Confidence 3445567889998876654
No 401
>KOG3611|consensus
Probab=24.36 E-value=1.3e+02 Score=23.82 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=29.8
Q ss_pred ecCCCCceEEeC-CeEEEcCCCCCCCeEEEEEeccC-CcceeEEEEEEEec
Q psy11131 5 LVLPGPRTRVLG-PILAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQVST 53 (150)
Q Consensus 5 ~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~l~v~~ 53 (150)
++..+.+..... +.+.+..+...|.|.|.|.+... .-.......+.+..
T Consensus 599 ~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~~~~~~ 649 (737)
T KOG3611|consen 599 EVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVNLHVAR 649 (737)
T ss_pred eeccCcceeecccCceeEEEEeeccCcccccccccCccccceEEEeeeecC
Confidence 344444444443 54778889999999999988753 22233344444443
Done!