RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11131
(150 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 108 bits (272), Expect = 3e-29
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
V+ R + + L I+ EDSG Y C +N G + E L V+ P ++PP +
Sbjct: 259 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 318
Query: 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
V A F C+ T P + ++W KDG+ I S + L I V +ED+G+YQC
Sbjct: 319 VDFGRPAVFTCQYTGNPIKT----VSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFV 372
Query: 124 RRSDGDVAQGSAELQLG 140
R A+ SAEL+LG
Sbjct: 373 RNDRES-AEASAELKLG 388
Score = 65.0 bits (158), Expect = 3e-13
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 19/157 (12%)
Query: 2 EPLLVLPGPRTRVLGPILAIEGVTAED------SGTYRCSSSNIGGEA-TAEVRLQVSTP 54
+ +PG R L AED + Y C + N G + +V ++
Sbjct: 44 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103
Query: 55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWFKDGRQIPGRTSST--------- 104
+ + V SA +C I + + +++W D + +
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 105 -SLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
L I VG ED YQC + + SA
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200
Score = 40.7 bits (95), Expect = 7e-05
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSL 106
P + + A +C+ + + I W + G S L
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 107 VINPVGRED------RGIYQCIARRSDGDVAQGSAELQLG 140
V P ED +Y C+AR G + ++
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 101
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 108 bits (272), Expect = 1e-28
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 9/138 (6%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
V+ R + + L I+ EDSG Y C +N G + E L V+ P ++PP +
Sbjct: 295 VVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQT 354
Query: 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
V A F C+ T P + ++W KDG+ I S + L I V +ED+G+YQC
Sbjct: 355 VDFGRPAVFTCQYTGNPIKT----VSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFV 408
Query: 124 RRSDGDVAQGSAELQLGG 141
R A+ SAEL+LGG
Sbjct: 409 RNDRES-AEASAELKLGG 425
Score = 92.3 bits (229), Expect = 9e-23
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I V A D G Y+C + + G A +L V + ++ + C +
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI-RQMEKKAIVAGETLIVTCPV 550
Query: 79 TPYDSGPYL-IAWFKDGRQIP-----GRTSSTSLVINPVGR-EDRGIYQCIARRSDGDVA 131
Y P I W +D R +P + +L+I V R D+ Y C+A+ +G A
Sbjct: 551 AGY---PIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSA 607
Query: 132 QGSAELQ 138
+GS E+Q
Sbjct: 608 RGSLEVQ 614
Score = 85.0 bits (210), Expect = 3e-20
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 14/131 (10%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
+L IE V A +G + C + N+ G L V P R + P + A +C+
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECK 737
Query: 78 ITPYDSGPYLIAWFKDGRQIPG-----------RTSSTSLVINPVGREDRGIYQCIARRS 126
P + W K PG R +L ++ + + + G Y C A +
Sbjct: 738 AD-GFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA-IN 794
Query: 127 DGDVAQGSAEL 137
+ +
Sbjct: 795 GIGSGLSAVIM 805
Score = 80.8 bits (199), Expect = 1e-18
Identities = 31/131 (23%), Positives = 42/131 (32%), Gaps = 14/131 (10%)
Query: 19 LAIEGVT-AEDSGTYRCSSSNIGGE-ATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQ 75
L IE V D TY C + N G A + +QV P + +
Sbjct: 581 LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLH 640
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGR---------TSSTSLVINPVGREDRGIYQCIARRS 126
C + D P I W DG+ I + L I V G + C A R+
Sbjct: 641 CSVPGGDL-PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA-RN 698
Query: 127 DGDVAQGSAEL 137
Q + L
Sbjct: 699 LAGHQQFTTPL 709
Score = 73.4 bits (180), Expect = 3e-16
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 27/141 (19%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYRVDVNPPLLSVHLDGSANF 74
+L IE V ED G Y+C N A A L++ P + ++ S
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 75 QCEIT----PYDSGPYLIAWFKDGRQIPG-------------RTSSTSLVINPVGREDRG 117
+C P I+W DG++I + L I V D G
Sbjct: 450 KCVAGGNPTP------EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 118 IYQCIARRSDGDVAQGSAELQ 138
+Y+CIA+ G VA+ SA+L
Sbjct: 504 LYKCIAKSKVG-VAEHSAKLN 523
Score = 70.3 bits (172), Expect = 4e-15
Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 19/157 (12%)
Query: 2 EPLLVLPGPRTRVLGPILAIEGVTAED------SGTYRCSSSNIGGEA-TAEVRLQVSTP 54
+ +PG R L AED + Y C + N G + +V ++
Sbjct: 79 TAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 138
Query: 55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWFKDGRQIPGR----------TSS 103
+ + V SA +C I + + +++W D + S
Sbjct: 139 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 198
Query: 104 TSLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
L I VG ED YQC + + SA
Sbjct: 199 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
Score = 66.1 bits (161), Expect = 1e-13
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 18/144 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSVHLDGSANFQ 75
+ + + + + G T + P + + A +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 76 CEITPYDSGPYLIAWFKDGRQIPG-------RTSSTSLVINPVGREDR------GIYQCI 122
C+ + + I W + G +S LV P ED +Y C+
Sbjct: 61 CKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118
Query: 123 ARRSDGDVAQGSAELQLGGTRNIK 146
AR G + ++ + +
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYE 142
Score = 59.6 bits (144), Expect = 2e-11
Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 28/136 (20%)
Query: 19 LAIEGVTAEDS-GTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPLLSVHL------ 68
L I V ED +Y+C + + T A V T P ++S+
Sbjct: 201 LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTY 260
Query: 69 --DGSANFQCEIT--PYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGRE 114
+ C P W+K + S +L+I E
Sbjct: 261 SGSSTMALLCPAQGYPVPV----FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316
Query: 115 DRGIYQCIARRSDGDV 130
D G Y C+ S G
Sbjct: 317 DSGKYLCVVNNSVGGE 332
Score = 40.7 bits (95), Expect = 8e-05
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVR-LQVSTP 54
+ RV L ++ + + G Y C + N G + V + V
Sbjct: 762 LKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 101 bits (252), Expect = 2e-26
Identities = 34/140 (24%), Positives = 54/140 (38%), Gaps = 11/140 (7%)
Query: 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLL 64
+ R IL I ED+G+Y C + N G+ A+ +L +
Sbjct: 246 PIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDI 305
Query: 65 SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGI 118
V ++ S ++C+ P + W K+G + + +L I V D G+
Sbjct: 306 HVAMEESVFWECKANGRPKPT----YRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGM 361
Query: 119 YQCIARRSDGDVAQGSAELQ 138
YQC+A G SAEL
Sbjct: 362 YQCVAENKHGV-IFSSAELS 380
Score = 74.1 bits (182), Expect = 2e-16
Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 10/147 (6%)
Query: 2 EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVDV 59
+ + R V+ G +L +D+GTY+C ++N G + E +LQ +
Sbjct: 47 TDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKT 106
Query: 60 NPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVG 112
+SV C P SG AW + + +L I V
Sbjct: 107 RTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE 165
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQL 139
+ D G Y C+ + + L
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPL 192
Score = 65.6 bits (160), Expect = 2e-13
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 23/138 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT---AEVRLQVST--------PYRVDVNPPLLSVH 67
L I V D G Y C +N L + P P +
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 68 LDGSANFQCEIT--PYDSGPYLIAWFK-DGRQIPGRT----SSTSLVINPVGREDRGIYQ 120
+ +C P + I W + DG+ I + S+ L I +ED G Y+
Sbjct: 219 KGTTVKLECFALGNPVPT----ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274
Query: 121 CIARRSDGDVAQGSAELQ 138
C+A S G +L
Sbjct: 275 CVAENSRGKNVA-KGQLT 291
Score = 48.7 bits (116), Expect = 1e-07
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+L R ++ L I V D+G Y+C + N G + L V
Sbjct: 336 LLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 46.8 bits (111), Expect = 6e-07
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 9/85 (10%)
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGREDRGIYQC 121
+ CE+ + I W +G + + L+ NP +D G YQC
Sbjct: 23 EKKVKLSCEVKG--NPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 122 IARRSDGDVAQGSAELQLGGTRNIK 146
IA S G + A+LQ N K
Sbjct: 81 IATNSFGTIVSREAKLQFAYLENFK 105
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 97.6 bits (243), Expect = 4e-25
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 11/137 (8%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
+ P+L I+ V ED GTY C + NI G T + R+ +
Sbjct: 248 QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEAD 307
Query: 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQC 121
+ + C + P + + W +DG+ + S L + + ED G+YQC
Sbjct: 308 IGSDLRWSCVASGKPRPA----VRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQC 363
Query: 122 IARRSDGDVAQGSAELQ 138
+A G V SAEL
Sbjct: 364 VAENKHGTV-YASAELT 379
Score = 75.7 bits (186), Expect = 3e-17
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 12/142 (8%)
Query: 2 EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVDV 59
L + P R R++ G ++ V A+D+G+Y+C ++N G + E L+
Sbjct: 46 TELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSA 105
Query: 60 NPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINP 110
+ + F C P W + +L I
Sbjct: 106 EERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 164
Query: 111 VGREDRGIYQCIARRSDGDVAQ 132
D G Y C A + +
Sbjct: 165 TEASDLGNYSCFATSHIDFITK 186
Score = 68.3 bits (167), Expect = 1e-14
Identities = 31/147 (21%), Positives = 40/147 (27%), Gaps = 22/147 (14%)
Query: 2 EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST------ 53
P + R V L I A D G Y C +++ T V + S
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 54 ------PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR--TSS 103
P P +C P I W K + +S
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQ----IKWRKLDGSQTSKWLSSE 256
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDV 130
L I V ED G Y+C A G
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRD 283
Score = 49.1 bits (117), Expect = 7e-08
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGREDRGIYQC 121
+ C + P W +G ++ S ++ NPV +D G YQC
Sbjct: 22 EEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 122 IARRSDGDVAQGSAELQLGGTRNIK 146
+A + G V A L+ G +
Sbjct: 80 VATNARGTVVSREASLRFGFLQEFS 104
Score = 47.2 bits (112), Expect = 3e-07
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ R V G L + EDSG Y+C + N G A L V
Sbjct: 335 LASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 96.1 bits (239), Expect = 2e-24
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 5 LVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL 63
+ L + +L G L I VT +DSGTY C + +A L V P +P
Sbjct: 262 IQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSN 321
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GR---TSSTSLVINPVGREDR 116
L + F+C ++ P + W K+G + ++L I V + D
Sbjct: 322 LYAYESMDIEFECAVSGKP----VPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDE 377
Query: 117 GIYQCIARRSDGDVAQGSAELQ 138
G YQC+A ++ AQ SA+L
Sbjct: 378 GFYQCVA-ENEAGNAQSSAQLI 398
Score = 80.3 bits (198), Expect = 9e-19
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 22/154 (14%)
Query: 2 EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATA-EVRLQVSTPYRVD 58
+ L +PG V+ P L I + DSG YRCS+ N T E +++ + +
Sbjct: 160 QDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLH 219
Query: 59 VNPPL------LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR------TSST 104
+ A +C ++ P P W + I R +
Sbjct: 220 RQLYFLQRPSNVIAIEGKDAVLECCVSGYP----PPSFTWLRGEEVIQLRSKKYSLLGGS 275
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+L+I+ V +D G Y C+ + ++ SAEL
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENI-SASAELT 308
Score = 76.0 bits (187), Expect = 3e-17
Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 19 LAIEGVTAEDSGTYRC--SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQC 76
+ D G Y+C S + G + ++ V+ P R ++ + + +C
Sbjct: 84 ILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC 143
Query: 77 EIT--PYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRS 126
E+ P + I W K+ + + + +L I+ + D G+Y+C AR
Sbjct: 144 EVIGDPMPT----IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNP 199
Query: 127 DGDVAQGSAELQ 138
AE++
Sbjct: 200 ASTRTGNEAEVR 211
Score = 59.5 bits (144), Expect = 2e-11
Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 14/123 (11%)
Query: 37 SNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQ 96
+ + P G+ C P I W KDG
Sbjct: 4 GSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPV-IKWKKDGLI 62
Query: 97 IPGRTSS------------TSLVINPVGREDRGIYQCIAR-RSDGDVAQGSAELQLGGTR 143
+ +++ + + D G+YQC A G + +A++ + G
Sbjct: 63 LALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPL 122
Query: 144 NIK 146
Sbjct: 123 RFL 125
Score = 47.5 bits (113), Expect = 2e-07
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 6 VLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
V+P +++ G L I GV D G Y+C + N G A + +L V P
Sbjct: 353 VIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 90.6 bits (225), Expect = 6e-24
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 7/124 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L+++ V D+G Y C + G + V L V V P L+V + CE
Sbjct: 62 LSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCE 121
Query: 78 IT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135
P P I W++ +I G S V+N G ++ C A G + +A
Sbjct: 122 AVGPP---EPVTIVWWRGTTKIGGPAPSP-SVLNVTGVTQSTMFSCEAHNLKGLASSRTA 177
Query: 136 ELQL 139
+ L
Sbjct: 178 TVHL 181
Score = 48.6 bits (116), Expect = 6e-08
Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 20/92 (21%)
Query: 61 PPLLSVHLDGSANFQCEI----TPYDSGPYLIAWFKDGRQIP----------GRTSSTSL 106
P L+V C + P I W KDG + + L
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGMEEP------DIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ V R D G Y C L
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLT 94
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 90.2 bits (224), Expect = 1e-23
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 5 LVLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNP 61
+ L R + G +L I V D G Y C+++N G A + LQV ++ P
Sbjct: 48 IKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP 107
Query: 62 PLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GR---TSSTSLVINPVGRE 114
+ + A C P ++W K + R S SL I+ V +E
Sbjct: 108 INVKIIEGLKAVLPCTTMGNP----KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163
Query: 115 DRGIYQCIARRSDGDVAQGSAELQ 138
D G Y+C+A+ S G +L+
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLE 187
Score = 52.4 bits (126), Expect = 3e-09
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGRE 114
+ ++ A F C + P I+W ++ I + L I V
Sbjct: 17 VDALVEEVATFMCAVESYP----QPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDS 72
Query: 115 DRGIYQCIARRSDGDVAQGSAELQL 139
D GIY C A G + LQ+
Sbjct: 73 DDGIYCCTANNGVGGAVESCGALQV 97
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 91.5 bits (227), Expect = 2e-23
Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 8/143 (5%)
Query: 3 PLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
P+ G L T +++GTYRC+ + + L V P
Sbjct: 37 PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA 96
Query: 63 L-LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGRED 115
++V A C IT ++ ++G + R + +I D
Sbjct: 97 QEVTVVEGQEAVLPCLITDPALKD-SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLD 155
Query: 116 RGIYQCIARRSDGDVAQGSAELQ 138
Y C + + L+
Sbjct: 156 SNTYVCKTMVNGRESTSTGIWLK 178
Score = 75.0 bits (184), Expect = 3e-17
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 17/135 (12%)
Query: 19 LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSAN 73
I DS TY C N + + L+V+ P ++ + P L +A
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSST----------SLVINPVGREDRGIYQCIA 123
C T + + + + ++ +S +L +N V +D GIY C+A
Sbjct: 206 IVCSATNAEV-GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVA 264
Query: 124 RRSDGDVAQGSAELQ 138
G + Q
Sbjct: 265 SNDVG-TRTATMNFQ 278
Score = 43.0 bits (101), Expect = 9e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L++ V +D+G Y C +SN G TA + QV
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 90.4 bits (224), Expect = 4e-23
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR--VDVNPPLLSVHLDGSAN 73
L I +GTY CS +A + + V + V +
Sbjct: 130 NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVT 189
Query: 74 FQCEITPYDSGPYLI---AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
CE P L +++ + + GR +S+ I RED G+Y C A DG+V
Sbjct: 190 LSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249
Query: 131 AQGSAELQL 139
+ S EL+L
Sbjct: 250 LKRSPELEL 258
Score = 78.8 bits (194), Expect = 1e-18
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 4/120 (3%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
G T+ P I + DSG YRC + ++L++ + + +
Sbjct: 40 GTATQTSTPSYRITSASVNDSGEYRCQRGL--SGRSDPIQLEIHRGW-LLLQVSSRVFTE 96
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
+C D Y + ++++G+ +++L I G Y C
Sbjct: 97 GEPLALRCHA-WKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR 155
Score = 55.3 bits (133), Expect = 4e-10
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
+ + PP +SV + + CE+ G WF +G TS+ S I D
Sbjct: 4 ITLQPPWVSVFQEETVTLHCEVLH-LPGSSSTQWFLNGTATQ--TSTPSYRITSASVNDS 60
Query: 117 GIYQCIARRSDG 128
G Y+C S
Sbjct: 61 GEYRCQRGLSGR 72
Score = 38.7 bits (90), Expect = 3e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQV 51
R R I EDSG Y C ++ G + + E+ LQV
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 92.4 bits (229), Expect = 7e-23
Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 18/146 (12%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP---PLLS 65
G L I DSG + C ++N G A L+V +++ P +
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVG 112
V+ + + E + P W R + + L + +
Sbjct: 325 VNDGENVDLIVEYEAFPK-PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
+ G Y + SD A + +
Sbjct: 384 GTEGGTYTFLVSNSDV-NAAIAFNVY 408
Score = 75.1 bits (184), Expect = 7e-17
Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 10/107 (9%)
Query: 26 AEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPY 81
A + + C G + V +P + L V + C +
Sbjct: 4 ARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGF 63
Query: 82 DSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
+ W + + + G Y C +
Sbjct: 64 ------VKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS 104
Score = 64.7 bits (157), Expect = 3e-13
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 21/139 (15%)
Query: 19 LAIEGVT-AEDSGTYRCSSSNIGGE-ATAEVRLQV----STPYRVDVNPPLLSVHLDGSA 72
+ I+ V A CS G + + L+V V V+ +
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEF 229
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS-------------LVINPVGREDRGIY 119
C I S W ++ Q + S L I+ D G++
Sbjct: 230 TVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288
Query: 120 QCIARRSDGDVAQGSAELQ 138
C A + G A + L+
Sbjct: 289 MCYANNTFG-SANVTTTLE 306
Score = 64.7 bits (157), Expect = 4e-13
Identities = 21/128 (16%), Positives = 33/128 (25%), Gaps = 32/128 (25%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L + + + GTY SN A + V+T P +L+ + QC
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK------PEILTYDRLVNGMLQCVA 430
Query: 79 T--PYDSGPYLIAWFKDG--------------------RQIPGRTSSTSLVINPVGREDR 116
P I W+ P I+ +
Sbjct: 431 AGFP----EPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHN 486
Query: 117 GIYQCIAR 124
G +C A
Sbjct: 487 GTVECKAY 494
Score = 63.9 bits (155), Expect = 6e-13
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
E A ++G Y C++ + + + + V P ++ + L D +C
Sbjct: 81 EWITEKAEATNTGKYTCTNKH---GLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCP 137
Query: 78 ITPYDSGPYLIAWFK--DGRQIPGRT------SSTSLVINPVGREDRGIYQCIARRSDGD 129
+T K G+ +P + ++ + R C +
Sbjct: 138 LT---DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Query: 130 VAQGSAELQ 138
V L+
Sbjct: 195 VLSEKFILK 203
Score = 44.7 bits (105), Expect = 3e-06
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
+I+ + +GT C + N G+ +A + ++P
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 90.6 bits (225), Expect = 1e-22
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 13/130 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I+ V DSG Y C +++ G + L + + N + N C++
Sbjct: 65 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV 124
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIARRSDG 128
+ I W +D +P + + L I P D G Y C A +
Sbjct: 125 K-SNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA-TNHI 181
Query: 129 DVAQGSAELQ 138
L
Sbjct: 182 GTRFQEYILA 191
Score = 43.3 bits (102), Expect = 9e-06
Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 18/94 (19%)
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTS------S 103
+ + + +G C+ I W + GR S
Sbjct: 5 IQLKNETTYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS 62
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
+SL I V D G Y C A G Q S L
Sbjct: 63 SSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYL 95
Score = 41.7 bits (98), Expect = 3e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
IL I + D G Y C+++N G E L +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 87.3 bits (216), Expect = 2e-22
Identities = 38/146 (26%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAE--VRLQVSTPYRVDVNPPLLSVH 67
R L + + VT ED+GTY C S GG + E V+L V P S
Sbjct: 61 DRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------------RTSSTSLVINPVG 112
+ A C WFKDG +P ++ LV +P+
Sbjct: 121 IGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
D G Y C AR G S ++
Sbjct: 180 ASDTGEYSCEARNGYGT-PMTSNAVR 204
Score = 42.6 bits (100), Expect = 9e-06
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L + ++A D+G Y C + N G +++
Sbjct: 173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 90.3 bits (224), Expect = 2e-22
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 7 LPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLL 64
LP + + L I V+ EDSG Y C +SN G + ++V P L
Sbjct: 263 LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNL 322
Query: 65 SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSST-------SLVINPVGRED 115
+ C P + W +G + + +++
Sbjct: 323 ILAPGEDGRLVCRANGNP----KPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISS 378
Query: 116 RGIYQCIARRSDGDVAQGSAELQ 138
R +YQC G + +A +
Sbjct: 379 RAVYQCNTSNEHGYL-LANAFVS 400
Score = 73.4 bits (180), Expect = 3e-16
Identities = 34/153 (22%), Positives = 46/153 (30%), Gaps = 16/153 (10%)
Query: 2 EPLLVLPGPRTRVLGP------ILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVST- 53
+ PR + G E G Y+C + N G A + +RLQVS
Sbjct: 56 RFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS 115
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---GRTSST---SLV 107
P N + V QC P +I W + R S L
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174
Query: 108 INPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
+ V +D + Y C AR Q L
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL 207
Score = 65.7 bits (160), Expect = 1e-13
Identities = 29/139 (20%), Positives = 45/139 (32%), Gaps = 22/139 (15%)
Query: 19 LAIEGVTAEDS-GTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPLL---------- 64
L V +D Y C++ L+V T V P
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 65 SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIY 119
V +C + + P IAW+K G +P + +L I V ED G Y
Sbjct: 233 MVLRGMDLLLECIASGVPT-PD-IAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 120 QCIARRSDGDVAQGSAELQ 138
C+A G + + ++
Sbjct: 291 FCLASNKMGSIRH-TISVR 308
Score = 51.4 bits (123), Expect = 1e-08
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 45 AEVRLQVSTPYRVDVNPPL-LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---- 99
++ +++ P + V + +CE + W ++ R
Sbjct: 7 PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKG--NPAPSFHWTRNSRFFNIAKDP 64
Query: 100 ----RTSSTSLVINPV----GREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146
R S +LVI+ E G YQC AR G LQ+ +
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP 119
Score = 45.2 bits (107), Expect = 2e-06
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
P P V G + Y+C++SN G A + V
Sbjct: 358 PNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 88.6 bits (220), Expect = 3e-22
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L + ++ EDSG Y C + N G A++ L+V P P + + +CE+
Sbjct: 157 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL 216
Query: 79 T--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDG 128
P P+ ++W KD R++ + TS+ I V D G YQC A +D
Sbjct: 217 QGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA-SNDV 271
Query: 129 DVAQGSAEL 137
+
Sbjct: 272 GSYTCVGSI 280
Score = 87.1 bits (216), Expect = 9e-22
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
+ PG ++ L + VT D+G Y C +SN+ G+ + +L V P R
Sbjct: 46 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL 105
Query: 62 P-LLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINP 110
V D ++C+I P + W+KD +I S L +
Sbjct: 106 EPSRIVKQDEHTRYECKIGGSPEIK----VLWYKDETEIQESSKFRMSFVESVAVLEMYN 161
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ ED G Y C A + G A S L+
Sbjct: 162 LSVEDSGDYTCEAHNAAG-SASSSTSLK 188
Score = 51.7 bits (124), Expect = 8e-09
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG--------RTSS 103
P D+ P + + L S F+C +T P I W KD R+I ++
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTA----PIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+L + V + D G Y C A G SA+L
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG-KDSCSAQLG 94
Score = 44.7 bits (106), Expect = 3e-06
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ G + +++ + I V + D G Y+C +SN G T + +
Sbjct: 233 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 89.5 bits (222), Expect = 7e-22
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 20/148 (13%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-PYRVDVN 60
+ PG ++ L + VT D+G Y C +SN+ G+ + +L V P +
Sbjct: 238 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL 297
Query: 61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINP 110
P V D ++C+I P + W+KD +I S L +
Sbjct: 298 EPSRIVKQDEHTRYECKIGGSP----EIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN 353
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ ED G Y C A + G A S L+
Sbjct: 354 LSVEDSGDYTCEAHNAAGS-ASSSTSLK 380
Score = 86.8 bits (215), Expect = 6e-21
Identities = 29/145 (20%), Positives = 53/145 (36%), Gaps = 16/145 (11%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
+ G + +++ + I V + D G Y+C +SN G T + + P R
Sbjct: 425 LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKL 484
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------STSLVINPVG 112
+S + Q I + P +AWFKD +I + +L +
Sbjct: 485 SDISTVVGEEVQLQATIEGAE--PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAE 542
Query: 113 REDRGIYQCIARRSDGDVAQGSAEL 137
+ G Y C +++ + A L
Sbjct: 543 PANAGKYTCQI-KNEAGTQECFATL 566
Score = 86.4 bits (214), Expect = 9e-21
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 2 EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV 59
+ R + +L + ++ EDSG Y C + N G A++ L+V P
Sbjct: 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389
Query: 60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVIN 109
P + + +CE+ P P+ ++W KD R++ + TS+ I
Sbjct: 390 KPHPVETLKGADVHLECELQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHIL 445
Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
V D G YQC A G +
Sbjct: 446 NVDSADIGEYQCKASNDVG-SDTCVGSIT 473
Score = 83.7 bits (207), Expect = 7e-20
Identities = 34/153 (22%), Positives = 51/153 (33%), Gaps = 16/153 (10%)
Query: 2 EPLLVLPGPRTRVLGPI--LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYR 56
L P + + + L I V D G Y C + N G + L + P
Sbjct: 44 TKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS 103
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVI 108
+ L F+C I + P ++W+KDG + + +L I
Sbjct: 104 FARKLKDVHETLGFPVAFECRINGSE--PLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161
Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141
+ G Y C A G A SA+L L
Sbjct: 162 LQTDQSHVGQYNCSASNPLGT-ASSSAKLTLSE 193
Score = 76.8 bits (189), Expect = 2e-17
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 2 EPLLVLPGPRTRVLGPI--LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS---TPYR 56
E L +T + + L I G Y CS+SN G A++ +L +S P
Sbjct: 140 ELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF 199
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR--------TSSTSLV 107
D+ P + + L S F+C +T + I W KD R+I ++ +L
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGT---APIKITWAKDNREIRPGGNYKMTLVENTATLT 256
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ V + D G Y C A G SA+L
Sbjct: 257 VLKVTKGDAGQYTCYASNVAGK-DSCSAQLG 286
Score = 52.5 bits (126), Expect = 6e-09
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVG 112
+ + QC++ IAW+K+ ++ + SLVIN V
Sbjct: 12 LEHVEAAIGEPITLQCKVDGT--PEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVD 69
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQLGG 141
D G Y C A S G SA L +
Sbjct: 70 HSDVGEYTCKAENSVG-AVASSAVLVIKE 97
Score = 42.1 bits (99), Expect = 2e-05
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L ++G Y C N G L V
Sbjct: 536 LQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 85.8 bits (212), Expect = 8e-22
Identities = 35/149 (23%), Positives = 48/149 (32%), Gaps = 20/149 (13%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAE--VRLQVSTPYRVDVNPPLLSV 66
R + VT +D+G Y C S GG+ E + L V P SV
Sbjct: 57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSV 116
Query: 67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS----------------STSLVINP 110
+ A C +WFKDG + + S L+ +P
Sbjct: 117 TIGNRAVLTCSEHDGSPPSE-YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQL 139
V D G Y C A+ G A S +
Sbjct: 176 VTAFDSGEYYCQAQNGYGT-AMRSEAAHM 203
Score = 41.9 bits (98), Expect = 2e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + VTA DSG Y C + N G A +
Sbjct: 171 LIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 85.2 bits (211), Expect = 8e-22
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 22/152 (14%)
Query: 2 EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVD 58
E + + R +L L I + D G YRC ++ + V+ P +
Sbjct: 41 EEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS 100
Query: 59 VNPPL--LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG------RTSSTSL 106
+ + F C + P I+WF++G+ I + S+T L
Sbjct: 101 MPQKSFNATAERGEEMTFSCRASGSPEP------AISWFRNGKLIEENEKYILKGSNTEL 154
Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ + D G Y C A G + A LQ
Sbjct: 155 TVRNIINSDGGPYVCRATNKAG-EDEKQAFLQ 185
Score = 47.5 bits (113), Expect = 2e-07
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 65 SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVGRED 115
A C ++ P P ++W ++ + + +L I + + D
Sbjct: 13 EFKQGEDAEVVCRVSSSPA---P-AVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSD 68
Query: 116 RGIYQCIARRSDGDVAQGSAEL 137
GIY+C R +
Sbjct: 69 EGIYRCEGRVEARGEIDFRDII 90
Score = 44.4 bits (105), Expect = 2e-06
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 6 VLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ + + G L + + D G Y C ++N GE + LQV
Sbjct: 139 IEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 89.4 bits (221), Expect = 9e-22
Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 11/138 (7%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV---NPPLLS 65
G + L I+GVT D G Y C++S+ ++V V L+
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
Query: 66 VHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQC 121
+ + Y P I W+K+G + + L I V D G Y
Sbjct: 342 ATVGERVRIPAKYLGY---PPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398
Query: 122 IARRSDGDVAQGSAELQL 139
I Q S + L
Sbjct: 399 ILTNPISKEKQ-SHVVSL 415
Score = 84.4 bits (208), Expect = 5e-20
Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 17/133 (12%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS----TPYRVDVNPPLLSVHLDGSAN 73
I+ ++ + +D G Y C + + + V Q++ + N + + S
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 74 FQCEIT--PYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARR 125
C + P P I WFKD + + + +L I V +ED G+Y C A
Sbjct: 686 VSCTASGNP----PPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741
Query: 126 SDGDVAQGSAELQ 138
G A+ A
Sbjct: 742 VLG-CAKVEAFFI 753
Score = 83.7 bits (206), Expect = 9e-20
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV-----DVNPPLLSVHLDGSA 72
L I V D+G Y+C + V +Q + ++ + + +
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSD 127
C + + L A + + R +P S I G+ C A+ +D
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206
Query: 128 GDV 130
Sbjct: 207 ESY 209
Score = 74.0 bits (181), Expect = 2e-16
Identities = 21/150 (14%), Positives = 40/150 (26%), Gaps = 32/150 (21%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
+ + A S Y+C + N G + V+ + + P + S + C
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDM-QPTEQESVSLWCT 572
Query: 78 ITPYDSGPYLIAWFKDGRQI----------------------------PGRTSSTSLVIN 109
+ W+K G Q + +
Sbjct: 573 ADRST--FENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELK 630
Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+D+G Y C+A+ + QL
Sbjct: 631 NASLQDQGDYVCLAQDRKTK-KRHCVVRQL 659
Score = 72.9 bits (178), Expect = 5e-16
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 21/140 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR---VDVNPP-LLSVHLDGSANF 74
I +G C + + + + V YR V ++P + + +
Sbjct: 185 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 244
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPG----------------RTSSTSLVINPVGREDRGI 118
C + W + + ++L I+ V R D+G+
Sbjct: 245 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304
Query: 119 YQCIARRSDGDVAQGSAELQ 138
Y C A + S ++
Sbjct: 305 YTCAASSGLMT-KKNSTFVR 323
Score = 64.0 bits (155), Expect = 7e-13
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITP 80
++ + C + V L R+ + +L++ + + C
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL---DLPRLSIQKDILTIKANTTLQITCRGQR 57
Query: 81 YDSGPYLIAWFKDGRQIPGRTSST---------SLVINPVGREDRGIYQCIARRSDG 128
W + R T +L I V D G Y+C R +D
Sbjct: 58 ----DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
Score = 62.5 bits (151), Expect = 2e-12
Identities = 26/170 (15%), Positives = 42/170 (24%), Gaps = 47/170 (27%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTP---YRVDVNP 61
L T G +L I V+ D+G Y +N + + V L V P +
Sbjct: 371 LESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLIS 430
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS------------------ 103
P+ S + C + P+ I W+ + S
Sbjct: 431 PVDSYQYGTTQTLTCTVYAIPP-PHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVE 489
Query: 104 -----------------------TSLVINPVGREDRGIYQCIARRSDGDV 130
T + +Y+C A G
Sbjct: 490 DFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRG 539
Score = 44.0 bits (103), Expect = 5e-06
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I V ED G Y C + ++ G A E +
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 84.9 bits (210), Expect = 1e-21
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 15/131 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L I +D+G Y+C + G ++ A V +++ P A C+
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 78 IT--PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG 128
+ P I W GR + + + L I + + D G Y+C R
Sbjct: 124 VVSSL----PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 129 DVAQGSAELQL 139
++Q+
Sbjct: 180 GE-INFKDIQV 189
Score = 54.8 bits (132), Expect = 3e-10
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRTS----------ST 104
+VD+ P + + S F C++ I+WF +G ++ S+
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+L I +D GIY+C+ DG ++ + ++
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96
Score = 44.4 bits (105), Expect = 2e-06
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 2 EPLLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+++ R VL L I G+ D GTYRC + +QV
Sbjct: 139 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 86.9 bits (215), Expect = 1e-21
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 15/132 (11%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQC 76
L I +D+G Y+C + G A V +++ P A C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 77 EIT--PYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSD 127
++ P I W GR + + S+ L I + + D G Y+C R
Sbjct: 123 DVVSSL----PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 178
Query: 128 GDVAQGSAELQL 139
++Q+
Sbjct: 179 RG-EINFKDIQV 189
Score = 85.3 bits (211), Expect = 5e-21
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 22/154 (14%)
Query: 2 EPLLVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVD 58
+++ R VL L I G+ D GTYRC + ++++ V+ P V
Sbjct: 139 RDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQ 198
Query: 59 VNPPLL--SVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR----------TSST 104
++ + +L S C+ P ++W KDG I S+
Sbjct: 199 ARQSIVNATANLGQSVTLVCDADGFP----EPTMSWTKDGEPIENEEEDDEKHIFSDDSS 254
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L I V + D Y CIA G+ S L+
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLK 287
Score = 54.9 bits (132), Expect = 6e-10
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRTS----------ST 104
+VD+ P + + S F C++ D+ I+WF +G ++ S+
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAG-DAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+L I +D GIY+C+ DG ++ + ++
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96
Score = 45.3 bits (107), Expect = 2e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I V D Y C + N GE A + L+V
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 84.8 bits (210), Expect = 2e-21
Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 2 EPLLVLPGPRTRVLGP----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV 57
+ + P ++ L I VT +SG Y ++N G+AT+ L V +
Sbjct: 44 QVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLV----KA 99
Query: 58 DVNPPL-------LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS---- 102
+ PP ++V Q +T P ++ +++DG +I
Sbjct: 100 ETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP----TPVVKFYRDGAEIQSSLDFQISQE 155
Query: 103 --STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
SL+I ED G Y A S G A +AEL
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVG-RATSTAEL 191
Score = 51.3 bits (123), Expect = 6e-09
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVI 108
+ V +A F+ I+ P ++WF+DG+ I T L I
Sbjct: 12 LQSVVVLEGSTATFEAHISGFP----VPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67
Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
V + + G Y A G A +AEL
Sbjct: 68 PAVTKANSGRYSLKATNGSG-QATSTAELL 96
Score = 46.3 bits (110), Expect = 5e-07
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ ++ L I EDSGTY +++N G AT+ L V
Sbjct: 144 IQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 84.6 bits (209), Expect = 2e-21
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 7/124 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L I + D+G Y+C ++ + + P +V + N C+
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQ 129
Query: 78 IT--PYDSGPYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 134
P P + W +D + ++ G + C A + G +
Sbjct: 130 AQGPP---EPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRT 186
Query: 135 AELQ 138
A +
Sbjct: 187 ATIT 190
Score = 49.1 bits (117), Expect = 4e-08
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 18/97 (18%)
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS---------------- 102
NP ++ + +C++ P + W +DG+ + S
Sbjct: 7 GNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWI 65
Query: 103 -STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ L I + D G YQC+ +
Sbjct: 66 VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVG 102
Score = 33.0 bits (75), Expect = 0.020
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
P GP ++ + ++ C + N G T+ + V P
Sbjct: 147 PLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTAT-------ITVLPQ 194
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 86.0 bits (213), Expect = 3e-21
Identities = 27/147 (18%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 5 LVLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDV 59
++ R V L I ED+G YRC +++ G+ A V L++
Sbjct: 44 KIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE 103
Query: 60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP----GR---TSSTSLVINP 110
A C ++ P ++W ++ R ++ +L I
Sbjct: 104 VVSPQEFKQGEDAEVVCRVSSSP----APAVSWLYHNEEVTTISDNRFAMLANNNLQILN 159
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAEL 137
+ + D GIY+C R +
Sbjct: 160 INKSDEGIYRCEGRVEARGEIDFRDII 186
Score = 82.6 bits (204), Expect = 6e-20
Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 2 EPLLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQVSTPYRVD 58
E + + R +L L I + D G YRC ++ + V+ P +
Sbjct: 137 EEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAIS 196
Query: 59 VNPPL--LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG------RTSSTSL 106
+ + F C + P I+WF++G+ I + S+T L
Sbjct: 197 MPQKSFNATAERGEEMTFSCRASGSPEP------AISWFRNGKLIEENEKYILKGSNTEL 250
Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHY 148
+ + D G Y C A G + A LQ+ + H+
Sbjct: 251 TVRNIINSDGGPYVCRATNKAG-EDEKQAFLQVFVQHHHHHH 291
Score = 47.9 bits (114), Expect = 2e-07
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 12/94 (12%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRT--------SST 104
+V ++ + + + S F C P I W+ G +I +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAI---GEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60
Query: 105 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L I ED GIY+C A + G + + L+
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 87.0 bits (215), Expect = 3e-21
Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 11/148 (7%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
RT + + V D+G Y CSSS + +A V + + +
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEID 339
Query: 68 LDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCI 122
F Y P + W + P + S+ + G Y
Sbjct: 340 QYEEFCFSVRFKAY---PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 123 ARRSDGDVAQGSAELQL-GGTRNIKHYN 149
A D L + GT++ H++
Sbjct: 397 AENDDA-QFTKMFTLNIRSGTKHHHHHH 423
Score = 71.2 bits (174), Expect = 2e-15
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 13/117 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
+ I +T +G Y + T + + + P ++ C
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163
Query: 79 TPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSDG 128
++ W Q V++ + D +C AR G
Sbjct: 164 ESV--PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELG 215
Score = 68.9 bits (168), Expect = 1e-14
Identities = 18/146 (12%), Positives = 36/146 (24%), Gaps = 20/146 (13%)
Query: 2 EPLLVLPGPRTRVLGPI-LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN 60
V+ + + D RC + N G +
Sbjct: 178 SQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFTIDLNQ-TPQTT 233
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------GRTSSTSL 106
P L + + +C+ + G + W + + +
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292
Query: 107 VINPVGREDRGIYQCIARRSDGDVAQ 132
++ V R D G Y C + + A
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQSAL 318
Score = 63.9 bits (155), Expect = 6e-13
Identities = 14/116 (12%), Positives = 27/116 (23%), Gaps = 13/116 (11%)
Query: 20 AIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT 79
+ S +Y S + L+ + + V + S Q +
Sbjct: 18 KNNDSSVGKSSSYPMVSESPED---LGCALRPQSS-GTVYEAAAVEVDVSASITLQVLVD 73
Query: 80 PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDG 128
G W + + S+VI + G Y +
Sbjct: 74 AP--GNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT 127
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 87.7 bits (217), Expect = 3e-21
Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 12/147 (8%)
Query: 3 PLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGG---EATAEVRLQVSTPYRVDV 59
P G L I+ + D+G Y EAT + R+ P
Sbjct: 57 PGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSIS 116
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGR 113
+ V + F CE + W+ + + +P + +L + V R
Sbjct: 117 SNNSKPVEDKDAVAFTCEPE---TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTR 173
Query: 114 EDRGIYQCIARRSDGDVAQGSAELQLG 140
D Y+C + S L +
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVL 200
Score = 84.2 bits (208), Expect = 6e-20
Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 12/139 (8%)
Query: 6 VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQV-STPYRVDVNP 61
+ PR ++ L + VT D G Y C N + + + V L V P ++P
Sbjct: 329 LPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
+ + C S P +W DG + L I+ + ++ G+Y
Sbjct: 389 SYTYYRPGVNLSLSCHAA---SNPPAQYSWLIDGNIQQ---HTQELFISNITEKNSGLYT 442
Query: 121 CIARRSDGDVAQGSAELQL 139
C A S + +
Sbjct: 443 CQANNSASGH-SRTTVKTI 460
Score = 83.5 bits (206), Expect = 9e-20
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 13/133 (9%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRV----DVNPPLLSVHLDGS 71
L I +T ++SG Y C ++N + ++ + + V +
Sbjct: 425 TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDA 484
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------SLVINPVGREDRGIYQCIARR 125
F CE ++ W+ +G+ +P +L + V R D Y C +
Sbjct: 485 VAFTCEP---EAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQN 541
Query: 126 SDGDVAQGSAELQ 138
S L
Sbjct: 542 SVSANRSDPVTLD 554
Score = 82.7 bits (204), Expect = 2e-19
Identities = 28/139 (20%), Positives = 45/139 (32%), Gaps = 12/139 (8%)
Query: 6 VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSN-IGGEATAEVRLQVST-PYRVDVNP 61
+ PR ++ L + VT D+ Y C N + + V L V P ++P
Sbjct: 507 LPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
P S + N C S P +W +G + L I + + G Y
Sbjct: 567 PDSSYLSGANLNLSCHS---ASNPSPQYSWRINGIPQ---QHTQVLFIAKITPNNNGTYA 620
Query: 121 CIARRSDGDVAQGSAELQL 139
C + S +
Sbjct: 621 CFV-SNLATGRNNSIVKSI 638
Score = 82.7 bits (204), Expect = 2e-19
Identities = 31/140 (22%), Positives = 48/140 (34%), Gaps = 8/140 (5%)
Query: 2 EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVS-TPYRVDV 59
+ L V P + L + VT D+ +Y+C + N V L V P +
Sbjct: 149 QSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI 208
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIY 119
+P S + N C P +WF +G S+ L I + + G Y
Sbjct: 209 SPLNTSYRSGENLNLSCHAASNP--PAQYSWFVNGTFQQ---STQELFIPNITVNNSGSY 263
Query: 120 QCIARRSDGDVAQGSAELQL 139
C A SD + +
Sbjct: 264 TCQAHNSDTG-LNRTTVTTI 282
Score = 76.5 bits (188), Expect = 2e-17
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 13/133 (9%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVST-PYRVDVNPPLLSVHLDG-S 71
L I +T +SG+Y C + N T + V P + + + D +
Sbjct: 247 TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDA 306
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARR 125
CE + W+ + + +P + +L + V R D G Y+C +
Sbjct: 307 VALTCE---PEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQN 363
Query: 126 SDGDVAQGSAELQ 138
L
Sbjct: 364 ELSVDHSDPVILN 376
Score = 41.9 bits (98), Expect = 3e-05
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 26/108 (24%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR--------------- 100
++ + +V P + +W+K R R
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNLPQH--LFGYSWYKGERVDGNRQIIGYVIGTQQATPG 58
Query: 101 ---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+ SL+I + + D G Y +SD + + + ++
Sbjct: 59 PAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRV 106
Score = 41.5 bits (97), Expect = 4e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+L I +T ++GTY C SN+ + ++
Sbjct: 603 TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 83.7 bits (207), Expect = 4e-21
Identities = 31/152 (20%), Positives = 48/152 (31%), Gaps = 25/152 (16%)
Query: 6 VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL 63
+ + + L + + D G Y C ++N GE + LQV + +
Sbjct: 45 IEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI-IQLKN 103
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP---------------GRTSSTSL 106
+ + +G C+ P I W + G+ S+SL
Sbjct: 104 ETTYENGQVTLVCDAEGEPIPE----ITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 159
Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
I V D G Y C A S Q S L
Sbjct: 160 HIKDVKLSDSGRYDCEA-ASRIGGHQKSMYLD 190
Score = 55.2 bits (133), Expect = 2e-10
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 52 STPYRVDVNPPL-LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG------RTS 102
S P + F C + P I+WF++G+ I + S
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSP----EPAISWFRNGKLIEENEKYILKGS 56
Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+T L + + D G Y C A G + A LQ
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAG-EDEKQAFLQ 91
Score = 44.8 bits (106), Expect = 1e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I+ V DSG Y C +++ G + L +
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 83.7 bits (207), Expect = 4e-21
Identities = 26/133 (19%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVN 60
++ R V L I ED+G YRC +++ G+ A V L++
Sbjct: 43 IISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 102
Query: 61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPV 111
A C ++ P ++W ++ + + +L I +
Sbjct: 103 VSPQEFKQGEDAEVVCRVSSSP----APAVSWLYHNEEVTTISDNRFAMLANNNLQILNI 158
Query: 112 GREDRGIYQCIAR 124
+ D GIY+C R
Sbjct: 159 NKSDEGIYRCEGR 171
Score = 50.6 bits (121), Expect = 1e-08
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--------GRTSSTS 105
+V ++ + + + S F C P + G +I +
Sbjct: 4 QVTISLSKVELSVGESKFFTCTAIGEPESI----DWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L I ED GIY+C A + G + + L+
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 92
Score = 39.8 bits (93), Expect = 8e-05
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 2 EPLLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
E + + R +L L I + D G YRC + V
Sbjct: 135 EEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 84.1 bits (208), Expect = 4e-21
Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 25/152 (16%)
Query: 18 ILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL-------LSVHLD 69
+L I+ + T D Y C +SN GE + RL V ++ P V
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 70 GSANFQCEIT--PYDSGPYLIAWFKDGRQIP-----------GRTSSTSLVINPVGREDR 116
+A C + P P I WFKD + S +L I D+
Sbjct: 124 RTATMLCAASGNPD---P-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 117 GIYQCIARRSDGDVAQGSAELQLGGTRNIKHY 148
G Y+C+A S G A L + GT++ H+
Sbjct: 180 GKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211
Score = 48.7 bits (116), Expect = 8e-08
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT---------SSTSLVINPVG 112
+ G A+F C+ T P P I W K G+++ + S + L I P+
Sbjct: 16 QTGVSGGVASFICQATGDPR---PK-IVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLR 71
Query: 113 R-EDRGIYQCIARRSDGDVAQGSAELQ 138
D IY+C+A + G S L
Sbjct: 72 TPRDEAIYECVASNNVG-EISVSTRLT 97
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 85.0 bits (210), Expect = 7e-21
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 6/127 (4%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP-LLSVHLDGSANFQC 76
IL+ T +++GTYRC+ +A + L V P R + V D A C
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPC 111
Query: 77 EITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVA 131
+T + GR + T I+ YQC A V
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVM 171
Query: 132 QGSAELQ 138
S L+
Sbjct: 172 SISIRLK 178
Score = 71.9 bits (176), Expect = 5e-16
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 17/135 (12%)
Query: 19 LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVST----PYRVDVNPPLLSVHLDGSAN 73
I S Y+CS + +RL+V P + + P L +A
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSST----------SLVINPVGREDRGIYQCIA 123
C + D + + + ++ S +L ++ V + G Y C+A
Sbjct: 206 IVCSASSVDV-NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVA 264
Query: 124 RRSDGDVAQGSAELQ 138
G S +
Sbjct: 265 SNVQG-KHSTSMFFR 278
Score = 43.8 bits (103), Expect = 5e-06
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L ++ V + +G Y C +SN+ G+ + + +V
Sbjct: 246 TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279
Score = 39.6 bits (92), Expect = 2e-04
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT---SSTSLVINPVG 112
++ + P L V + +C +G + W SS+ L N
Sbjct: 6 VIEPSVPELVVKPGATVTLRCVG----NGS--VEWDGPPSPHWTLYSDGSSSILSTNNAT 59
Query: 113 REDRGIYQCIARRSDGDV 130
++ G Y+C
Sbjct: 60 FQNTGTYRCTEPGDPLGG 77
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 84.8 bits (210), Expect = 1e-20
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 19/135 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL-----LSVHLDGSAN 73
L I VT +D+ Y+ ++N GG + L+V P ++ + L + +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 74 FQCEITPYDSGPYL-IAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIA 123
+ + P I W K I R+ ++ + N V R+D G Y A
Sbjct: 124 IKIPFS---GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 124 RRSDGDVAQGSAELQ 138
++ + Q + EL
Sbjct: 181 -KNRFGIDQKTVELD 194
Score = 48.6 bits (116), Expect = 1e-07
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----------RTSSTS 105
L+V +A C++T ++ W++ G++I +
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L+I V +D +YQ A G G+A L+
Sbjct: 64 LIIASVTDDDATVYQVRATNQGG-SVSGTASLE 95
Score = 40.5 bits (95), Expect = 6e-05
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
++ GV +D+G Y + N G V L V+
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 84.9 bits (210), Expect = 1e-20
Identities = 37/142 (26%), Positives = 52/142 (36%), Gaps = 22/142 (15%)
Query: 16 GPILAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP-------LLSVH 67
G +L I+ + T D Y C + N GE T +L V ++ P L V
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 68 LDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS--------STSLVINPVGREDRG 117
+A C + P I WFKD + S S +L I D+G
Sbjct: 122 RTRTATMLCAASGNPDPE----ITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 118 IYQCIARRSDGDVAQGSAELQL 139
Y+C+A S G A L +
Sbjct: 178 KYECVATNSAGVRYSSPANLYV 199
Score = 83.7 bits (207), Expect = 2e-20
Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 20/140 (14%)
Query: 10 PRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGE-----ATAEVRLQVSTPYRVDVNPPL 63
R + L L IE D G Y C ++N G A VR+Q P R + P
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAP-RFSILPMS 214
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTSSTSLVINPVGREDRG 117
+ G+ N C PY + W + + V+ +D
Sbjct: 215 HEIMPGGNVNITCVAVGSPMPY------VKWMQGAEDLTPEDDMPVGRNVLELTDVKDSA 268
Query: 118 IYQCIARRSDGDVAQGSAEL 137
Y C+A S V + A++
Sbjct: 269 NYTCVA-MSSLGVIEAVAQI 287
Score = 45.6 bits (108), Expect = 1e-06
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 51 VSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG--------- 99
P R P G A+F C+ T P + W K G+++
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDP----KPRVTWNKKGKKVNSQRFETIEFD 58
Query: 100 RTSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAELQ 138
++ L I P+ D +Y+C+A+ S G A+L
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVG-EITVHAKLT 97
Score = 44.0 bits (104), Expect = 4e-06
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
+E +DS Y C + + G A ++ V + +
Sbjct: 257 NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKH 299
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 85.3 bits (211), Expect = 1e-20
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPP-LLSVHL 68
R G L + ED G Y C N G+ ++L V + + + P ++ V
Sbjct: 264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQ 323
Query: 69 DGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIA 123
C++T P + + W + + + G + + LVI V D+G Y C A
Sbjct: 324 GQDVTIPCKVTGLPAPN----VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRA 379
Query: 124 RRSDGDVAQGSAELQ 138
GD +Q
Sbjct: 380 TNEHGDK-YFETLVQ 393
Score = 72.3 bits (177), Expect = 6e-16
Identities = 24/137 (17%), Positives = 38/137 (27%), Gaps = 17/137 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L A D G Y+C + G A+ + + + + C
Sbjct: 64 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCV 123
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPVGREDR---GIYQCI 122
+ P LI W K T +L V +ED Y C
Sbjct: 124 LPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 123 ARRSDGDVAQGSAELQL 139
A+ + D E ++
Sbjct: 183 AKNAAVDEEVVLVEYEI 199
Score = 66.1 bits (161), Expect = 1e-13
Identities = 22/146 (15%), Positives = 36/146 (24%), Gaps = 31/146 (21%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEA-----------TAEVRLQVSTPYRVDVNPPLLSV 66
+ D Y C++ N + + +
Sbjct: 165 FTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMA 224
Query: 67 HLDGSANFQCEI----TPYDSGPYLIAWFKDGRQIPG----------RTSSTSLVINPVG 112
C Y +FK+G+ + G RTS L+
Sbjct: 225 KAGDVTMIYCMYGSNPMGY------PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTL 278
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
ED G+Y C G + S +L
Sbjct: 279 PEDEGVYTCEVDNGVGKPQKHSLKLT 304
Score = 61.1 bits (148), Expect = 5e-12
Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------RT 101
L V + P + + +C I D +W KDG+ R
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQ-GVKYSWKKDGKSYNWQEHNAALRK 59
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIK 146
SLV D G YQC A G + +
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104
Score = 50.3 bits (120), Expect = 3e-08
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
L G R V L I+GV D G Y C ++N G+ E +QV+
Sbjct: 350 LSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 82.1 bits (203), Expect = 2e-20
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 21/135 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV-----NPPLLSVHLDGSAN 73
L I VT +D+ Y+ ++N GG + L+V P ++ + + +
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 74 FQCEIT--PYDSGPYLIAWFKDGRQI---------PGRTSSTSLVINPVGREDRGIYQCI 122
+ + P P +I W K I R+ ++ + N V R+D G Y
Sbjct: 124 IKIPFSGKPD---P-VITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 123 ARRSDGDVAQGSAEL 137
A+ G + Q + EL
Sbjct: 180 AKNRFG-IDQKTVEL 193
Score = 50.5 bits (121), Expect = 1e-08
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPV 111
L+V +A C++T P P ++ W++ G++I + L+I V
Sbjct: 14 LNVRYQSNATLVCKVTGHPK---P-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
+D +YQ A G G+A L+
Sbjct: 70 TDDDATVYQVRATNQGG-SVSGTASLE 95
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 5 LVLPGPRTRV-----LGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L+ +V ++ GV +D+G Y + N G V L V
Sbjct: 144 LIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 83.9 bits (207), Expect = 2e-20
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 26/143 (18%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD------------------VN 60
+ +E + ED GTY + + V L ++ V
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGRE 114
V + + +C++ + I W+KD R+I + +L+I ++
Sbjct: 228 YLSWEVTGECNVLLKCKVANIKKETH-IVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286
Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
D GIY+ I + G + +L
Sbjct: 287 DAGIYEVILKDDRGK-DKSRLKL 308
Score = 68.1 bits (166), Expect = 2e-14
Identities = 15/142 (10%), Positives = 41/142 (28%), Gaps = 24/142 (16%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL------------LS 65
+ + + +D G Y C ++ G A++ + + + ++ +
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGRED 115
+ G F + + + + ++I T + + + ED
Sbjct: 119 ILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177
Query: 116 RGIYQCIARRSDGDVAQGSAEL 137
G Y + + L
Sbjct: 178 EGTYTFQLQDGKA-TNHSTVVL 198
Score = 45.8 bits (108), Expect = 1e-06
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
Query: 61 PPLLSVHLDG--SANFQCEITPYDSGPYL-IAWFKDGRQIPGRT--------SSTSLVIN 109
+++V DG S NF+C+ P +W KD + T +
Sbjct: 8 EVVVNVDDDGVISLNFECDK----MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFK 63
Query: 110 PVGREDRGIYQCIARRSDGDVA 131
+G +D GIY C +DG +
Sbjct: 64 DLGMDDLGIYSCDVTDTDGIAS 85
Score = 43.8 bits (103), Expect = 5e-06
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 6 VLPGPRTRVLGPI--LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ + I L I + +D+G Y + G+ + ++L
Sbjct: 263 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 81.9 bits (202), Expect = 3e-20
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 23/150 (15%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQV---------------STPYRVDV 59
L V +D+G Y C +N + +L V + ++ V
Sbjct: 64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICV 123
Query: 60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRG 117
P + + QC P WFK+ + T ++ V E +G
Sbjct: 124 EPTSQKLMPGSTLVLQCVAVGSP----IPHYQWFKNELPLTHETKKL-YMVPYVDLEHQG 178
Query: 118 IYQCIARRSDGDVAQGSAELQLGGTRNIKH 147
Y C E+ + N+ H
Sbjct: 179 TYWCHVYNDRDSQDSKKVEIIIDELNNLGH 208
Score = 63.4 bits (154), Expect = 3e-13
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPG 99
V ++ VNP +V C T P++ WFK ++IP
Sbjct: 5 HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRAT---GHPFVQYQWFKMNKEIPN 61
Query: 100 RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+S L+ N V +D G Y C + ++L
Sbjct: 62 GNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 83.6 bits (206), Expect = 8e-20
Identities = 23/135 (17%), Positives = 36/135 (26%), Gaps = 10/135 (7%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
RT + + V D+G Y CSSS + +A V + + +
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-SALVTIVEKGFINATNSSEDYEIDQ 340
Query: 69 DGSANFQCEITPYDSGPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIA 123
F Y P + W + P + S+ + G Y A
Sbjct: 341 YEEFCFSVRFKAY---PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA 397
Query: 124 RRSDGDVAQGSAELQ 138
D L
Sbjct: 398 ENDDA-QFTKMFTLN 411
Score = 70.1 bits (171), Expect = 4e-15
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 11/127 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
+ I +T +G Y + T + + + P ++ C
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK-MENQDALVCIS 163
Query: 79 T--PYDSGPYLIAWFKDGRQIP----GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
P ++ W Q + + +C AR G
Sbjct: 164 ESVP----EPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECT 219
Query: 133 GSAELQL 139
+ L
Sbjct: 220 RLFTIDL 226
Score = 68.2 bits (166), Expect = 2e-14
Identities = 17/145 (11%), Positives = 36/145 (24%), Gaps = 18/145 (12%)
Query: 2 EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
V+ + + RC + N G + +
Sbjct: 178 SQGESCKEESPAVVKKEEKV--LHELFGTDIRCCARNELGRECTRL-FTIDLNQTPQTTL 234
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------------SSTSLV 107
P L + + +C+ + G + W + + +
Sbjct: 235 PQLFLKVGEPLWIRCKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 108 INPVGREDRGIYQCIARRSDGDVAQ 132
++ V R D G Y C + + A
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQSAL 318
Score = 65.1 bits (158), Expect = 2e-13
Identities = 15/135 (11%), Positives = 31/135 (22%), Gaps = 14/135 (10%)
Query: 20 AIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT 79
+ S +Y S + L+ + + V + S Q +
Sbjct: 18 KNNDSSVGKSSSYPMVSES---PEDLGCALRPQSS-GTVYEAAAVEVDVSASITLQVLVD 73
Query: 80 PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQ 132
G W + + S+VI + G Y + +
Sbjct: 74 --APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YT 130
Query: 133 GSAELQLGGTRNIKH 147
+ + T
Sbjct: 131 ILFTVSIRNTLLYTL 145
Score = 58.6 bits (141), Expect = 5e-11
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 29/136 (21%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
+ G ++ G Y + N + T L + +V +
Sbjct: 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV--------LA 420
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------------------TSLVI 108
++ C Y W K + P T +S +
Sbjct: 421 EASASQASCFSDGYP--LPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL 478
Query: 109 NPVGREDRGIYQCIAR 124
N + +C A
Sbjct: 479 NMSEAIKGFLVKCCAY 494
Score = 39.3 bits (91), Expect = 2e-04
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
+ A +C + N G + + L P+ +
Sbjct: 476 STLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGG 519
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 82.0 bits (202), Expect = 1e-19
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 14/141 (9%)
Query: 2 EPLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV 59
V TR+ L + EDSGTY C++ N + L+V +
Sbjct: 64 SARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFL 123
Query: 60 NPPLLS--VHLDGSANFQC---EITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLV 107
+ L S C D I W+KD + +T L+
Sbjct: 124 PFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLL 183
Query: 108 INPVGREDRGIYQCIARRSDG 128
++ V ED G Y+C+ +
Sbjct: 184 VHDVALEDAGYYRCVLTFAHE 204
Score = 62.0 bits (150), Expect = 3e-12
Identities = 22/152 (14%), Positives = 46/152 (30%), Gaps = 33/152 (21%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRL--QVSTPYRVDVNPPL-------LSVHLD 69
L + V ED+G YRC + + ++ + + P+ +S L
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLG 241
Query: 70 GSANFQCEITPYDSGP--YLIAWFKDGRQIP--------------------GRTSSTSLV 107
C++ P ++ W + I L+
Sbjct: 242 SRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLI 301
Query: 108 INPVGREDRGI-YQCIARRSDGDVAQGSAELQ 138
+PV RED + ++C+ + ++
Sbjct: 302 FDPVTREDLHMDFKCVV-HNTLSFQTLRTTVK 332
Score = 50.8 bits (121), Expect = 2e-08
Identities = 18/111 (16%), Positives = 29/111 (26%), Gaps = 17/111 (15%)
Query: 44 TAEVRLQVSTPYRVD---VNPPLLSVHLDGSANFQCEITPYD-----SGPYLIAWFKDGR 95
T + + +C PY S + W K+
Sbjct: 5 TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64
Query: 96 QIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+L + P +ED G Y C R + + S EL+
Sbjct: 65 ARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASY-CDKMSIELR 114
Score = 39.7 bits (92), Expect = 1e-04
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 18 ILAIEGVTAEDSGT-YRCSSSNIGGEATAEVRLQV 51
L + VT ED ++C N T ++
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 81.9 bits (202), Expect = 2e-19
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 19/151 (12%)
Query: 6 VLPGPRTRVL--GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL 63
+ + L I + +D+G Y + G+ + ++L + +
Sbjct: 48 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCK 107
Query: 64 LSVHLDGSANFQCEIT--------PYDSGPYLIAWFKDGRQIP--GRTSST------SLV 107
Q Y + W +G I R + L
Sbjct: 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ 167
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
IN D+G Y Q + +L
Sbjct: 168 INEPTPNDKGKYVMELFDGKT-GHQKTVDLS 197
Score = 74.6 bits (183), Expect = 7e-17
Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 41/168 (24%)
Query: 6 VLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-------- 53
+ R + L I T D G Y + V L
Sbjct: 149 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 208
Query: 54 -------------PYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP 98
+ P ++++ + N C + P P ++W K+ + +
Sbjct: 209 QRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP----PPEVSWLKNEKALA 264
Query: 99 G---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
+ IN V D G Y + + G +
Sbjct: 265 SDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTV 311
Score = 56.1 bits (135), Expect = 3e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVG 112
V V + + +C++ + I W+KD R+I + +L+I
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETH-IVWYKDEREISVDEKHDFKDGICTLLITEFS 69
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
++D GIY+ I + G + +L
Sbjct: 70 KKDAGIYEVILKDDRG-KDKSRLKLV 94
Score = 47.2 bits (112), Expect = 3e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
I GV+ DSG Y N G T++ + V P
Sbjct: 281 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 79.8 bits (197), Expect = 2e-19
Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 25/154 (16%)
Query: 5 LVLPGPRTRVLGP-----ILAIEGVTA-EDSGTYRCSSSNIGGEA-TAEVRLQVSTPYRV 57
+ R VL IL IE V A D Y C + N G+A +A+ L + +
Sbjct: 47 VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT 106
Query: 58 DVNPPL-------LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG-----RTSS 103
P+ + + + C+ P I W K+ ++
Sbjct: 107 PAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP----TPNIYWIKNQTKVDMSNPRYSLKD 162
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
L I ED+G Y+C+A S G + L
Sbjct: 163 GFLQIENSREEDQGKYECVAENSMGTEHSKATNL 196
Score = 49.4 bits (118), Expect = 4e-08
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 17/101 (16%)
Query: 51 VSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSS----- 103
+ P + P V + G A+F C P S I W K+G+++ G S
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPS----IVWRKNGKKVSGTQSRYTVLE 58
Query: 104 -----TSLVINPVGR-EDRGIYQCIARRSDGDVAQGSAELQ 138
+ L I PV D Y+C+A GD A L
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT 99
Score = 39.4 bits (92), Expect = 1e-04
Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVSTPYRVDVNPP 62
L IE ED G Y C + N G ++ L V RV
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR-RVGTKHH 208
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 78.8 bits (194), Expect = 2e-19
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 4/130 (3%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
G + L I EDSG Y+C + V L+V + + V
Sbjct: 43 GSLSEETNSSLNIVNAKFEDSGEYKCQHQQ--VNESEPVYLEVF-SDWLLLQASAEVVME 99
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
+C + Y + ++KDG + + ++ I ED G Y C +
Sbjct: 100 GQPLFLRCH-GWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 129 DVAQGSAELQ 138
D +
Sbjct: 159 DYESEPLNIT 168
Score = 51.4 bits (123), Expect = 4e-09
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED 115
+V +NPP + + C WF +G +++SL I ED
Sbjct: 6 KVSLNPPWNRIFKGENVTLTCN-GNNFFEVSSTKWFHNGSLSE--ETNSSLNIVNAKFED 62
Query: 116 RGIYQCIARRSDG 128
G Y+C ++ +
Sbjct: 63 SGEYKCQHQQVNE 75
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 78.4 bits (193), Expect = 3e-19
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 6/131 (4%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
I+ T DSG YRC ++ + V+L+V + + P V
Sbjct: 46 ESLISSQASSYFIDAATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPR--WVFK 101
Query: 69 DG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
+ + +C + ++ + + + ++G+ ++ I +D G Y C
Sbjct: 102 EEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGS 160
Query: 128 GDVAQGSAELQ 138
+V+ + +
Sbjct: 161 KNVSSETVNIT 171
Score = 52.6 bits (126), Expect = 2e-09
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 50 QVSTPYR--VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 107
+ + V + P SV S +C+ Y WF + I + ++S
Sbjct: 1 RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQ-GAYSPEDNSTQWFHNESLIS--SQASSYF 57
Query: 108 INPVGREDRGIYQCIARRS 126
I+ D G Y+C S
Sbjct: 58 IDAATVNDSGEYRCQTNLS 76
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 81.5 bits (200), Expect = 3e-19
Identities = 27/145 (18%), Positives = 40/145 (27%), Gaps = 12/145 (8%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSV 66
LP R +L D+G Y C N + L+V +P L V
Sbjct: 69 LPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPV 128
Query: 67 H----LDGSANFQCEIT---PYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGRED 115
H G C S I W+ +I +L +
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISN 188
Query: 116 RGIYQCIARRSD-GDVAQGSAELQL 139
G Y C+ + G + L +
Sbjct: 189 NGNYTCVVTYPENGRTFHLTRTLTV 213
Score = 66.0 bits (160), Expect = 1e-13
Identities = 24/168 (14%), Positives = 45/168 (26%), Gaps = 34/168 (20%)
Query: 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDV- 59
+ G L+ ++G Y C + T + ++V + V
Sbjct: 165 KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP 224
Query: 60 -------NPPLLSVHLDGSANFQCEITPYDSG--PYLIAWFKDGRQI------------- 97
+ + C + + W DG++
Sbjct: 225 PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESI 284
Query: 98 -----PGRTSSTSLVINPVGREDRGI-YQCIARRSDGDVAQGSAELQL 139
T + L I V ED Y C AR + G +A+++
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG-EVAKAAKVKQ 331
Score = 41.0 bits (95), Expect = 4e-05
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 14/68 (20%)
Query: 83 SGPYLIAWFKDGRQIPGRT-------------SSTSLVINPVGREDRGIYQCIARRSDGD 129
S + W+ + L P D G Y C+ R +
Sbjct: 45 SAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC 104
Query: 130 VAQGSAEL 137
++ + L
Sbjct: 105 -SKVAFPL 111
Score = 38.3 bits (88), Expect = 4e-04
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 18 ILAIEGVTAED-SGTYRCSSSNIGGEATAEVRLQVSTP 54
IL+I+ VT+ED +Y C + + GE +++ P
Sbjct: 297 ILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVP 334
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 78.4 bits (193), Expect = 4e-19
Identities = 31/148 (20%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
L R I AEDSG Y C + A ++V + + +
Sbjct: 45 ELTATRKNASNMEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSEN 103
Query: 66 VHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------GR-------TSSTSLVIN 109
+ A C+ P W K + GR + ++N
Sbjct: 104 KNEGQDAMMYCKSVGYP----HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159
Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAEL 137
ED G Y+C A S G A S L
Sbjct: 160 LQITEDPGEYECNATNSIG-SASVSTVL 186
Score = 62.6 bits (152), Expect = 3e-13
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVG 112
R+ + ++ QC +T W K+G ++ S+ IN
Sbjct: 5 RIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPR 64
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
ED G Y C+ + +A ++
Sbjct: 65 AEDSGEYHCVYHFVSA--PKANATIE 88
Score = 36.0 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 19 LAIEGV-TAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I + ED G Y C+++N G A+ L+V
Sbjct: 155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 77.8 bits (192), Expect = 7e-19
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 23/151 (15%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
++ + ++ L + ED G Y C ++N GE +L + +
Sbjct: 48 LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107
Query: 62 PL---LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVI 108
PL + + P + + WF + + + T LV+
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPA----MTWFHGQKLLQNSENITIENTEHYTHLVM 163
Query: 109 NPVGRE-DRGIYQCIARRSDGDVAQGSAELQ 138
V R+ G Y+ G +++
Sbjct: 164 KNVQRKTHAGKYKVQLSNVFG-TVDAILDVE 193
Score = 48.9 bits (117), Expect = 5e-08
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 23/89 (25%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP----------GRTSSTSLVIN 109
++ L +A C+I P I W++ G+++ GRT +L +
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLP------DIKWYRFGKELIQSRKYKMSSDGRTH--TLTVM 68
Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ED G+Y CIA G + S++L
Sbjct: 69 TEEQEDEGVYTCIATNEVG-EVETSSKLL 96
Score = 40.4 bits (95), Expect = 4e-05
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 5 LVLPGPRTRVL----GPILAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQV 51
L+ + L ++ V + +G Y+ SN+ G A + +++
Sbjct: 143 LLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI 194
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 77.9 bits (192), Expect = 8e-19
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 10/127 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
+ + D G Y C + N GEA A + + + NP + V + A +
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD-DFRQNPSDVMVAVGEPAVME 132
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRSDGDV 130
C+ P I+W KDG + + L+I + D G Y C+ G+
Sbjct: 133 CQP-PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGER 191
Query: 131 AQGSAEL 137
AEL
Sbjct: 192 ESEVAEL 198
Score = 45.2 bits (107), Expect = 1e-06
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 20/110 (18%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIP----- 98
+R Q P R+ +P L V A C+ P I W+K G ++
Sbjct: 1 GSLR-QEDFPPRIVEHPSDLIVSKGEPATLNCKAE---GRPTPTIEWYKGGERVETDKDD 56
Query: 99 ----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
G +V R D G+Y C+AR G+ A L+
Sbjct: 57 PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 79.3 bits (195), Expect = 1e-18
Identities = 37/169 (21%), Positives = 53/169 (31%), Gaps = 41/169 (24%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD------- 58
++P R V L + + EDSG Y C P D
Sbjct: 50 LVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDE 109
Query: 59 ------------------VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP 98
++ LL+V + F+C P S I+W K+GR+
Sbjct: 110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS----ISWLKNGREFR 165
Query: 99 G---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
G R SLV+ V DRG Y C+ G + + L
Sbjct: 166 GEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLD 213
Score = 71.6 bits (175), Expect = 9e-16
Identities = 31/143 (21%), Positives = 40/143 (27%), Gaps = 25/143 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-----STPYRVDVNPPLLSVHLDGSAN 73
L +E V D G Y C N G L V P P + L
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 74 FQCEIT-------------------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 114
F C++ G + K L ++ V E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
D G Y C+A S G + SA L
Sbjct: 302 DAGEYTCLAGNSIG-FSHHSAWL 323
Score = 53.9 bits (129), Expect = 2e-09
Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 5/89 (5%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTSLVIN 109
P L + C W KDG + L +
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMG-PTVWVKDGTGLVPSERVLVGPQRLQVL 66
Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAELQ 138
ED G Y C R + + S +
Sbjct: 67 NASHEDSGAYSCRQRLTQRVLCHFSVRVT 95
Score = 43.5 bits (102), Expect = 6e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L++ VT ED+G Y C + N G + L V
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA 328
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 76.9 bits (189), Expect = 2e-18
Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 26/143 (18%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD------------------VN 60
+ +E + ED GTY + + V L ++ V
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGRE 114
V + + +C++ I W+KD R+I + +L+I ++
Sbjct: 123 YLSWEVTGECNVLLKCKVANIKK-ETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 181
Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
D GIY+ I + G + +L
Sbjct: 182 DAGIYEVILKDDRG-KDKSRLKL 203
Score = 45.7 bits (108), Expect = 7e-07
Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 11/71 (15%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
+ + G F + + + + ++I T + + +
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQD 70
Query: 114 EDRGIYQCIAR 124
ED G Y +
Sbjct: 71 EDEGTYTFQLQ 81
Score = 42.2 bits (99), Expect = 1e-05
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I + +D+G Y + G+ + ++L
Sbjct: 173 LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 77.2 bits (190), Expect = 2e-18
Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 18/140 (12%)
Query: 14 VLGPILAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRVDVNPPLLSVHLDG 70
L ++G +D G Y C + N G+A A +++ V V P V
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD-DFRVEPKDTRVAKGE 124
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVGREDRG 117
+A +C P + W KDG + +L+I+ V D G
Sbjct: 125 TALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 118 IYQCIARRSDGDVAQGSAEL 137
Y+CIA+ G A+L
Sbjct: 184 NYKCIAQNLVGTRESSYAKL 203
Score = 47.2 bits (112), Expect = 2e-07
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSS 103
A + Q +P + +P L V + A C++ P I WFKDG +
Sbjct: 1 APLAGQYQSPRII-EHPTDLVVKKNEPATLNCKVE---GKPEPTIEWFKDGEPVSTNEKK 56
Query: 104 T------------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+ + +D G Y C+A+ G A LQ+
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 76.5 bits (188), Expect = 3e-18
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 8/132 (6%)
Query: 9 GPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL 68
I+ T +DSG YRC + + V+L+V + + P V
Sbjct: 46 ESLISSQASSYFIDAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAPR--WVFK 101
Query: 69 DG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
+ + +C + ++ + + + ++G+ ++ I +D G Y C
Sbjct: 102 EEDPIHLRCH-SWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGS 160
Query: 128 GDVAQGSAELQL 139
+V S +Q+
Sbjct: 161 KNV--SSETVQI 170
Score = 51.0 bits (122), Expect = 9e-09
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
V + P V S +C+ WF + I + S S I+ +D
Sbjct: 10 VFLEPQWYRVLEKDSVTLKCQGAY-SPEDQSTQWFHNESLISSQAS--SYFIDAATVDDS 66
Query: 117 GIYQCIARRS 126
G Y+C + S
Sbjct: 67 GEYRCQTQLS 76
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 76.3 bits (187), Expect = 5e-18
Identities = 24/126 (19%), Positives = 34/126 (26%), Gaps = 8/126 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
+ + + D GTY+C G A + L V S + +CE
Sbjct: 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP 145
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSST------SLVINPVGREDRGIYQCIARRSDGDVAQ 132
S P W K T + + E G Y C + G Q
Sbjct: 146 K-EGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG-SDQ 203
Query: 133 GSAELQ 138
L
Sbjct: 204 CMLRLD 209
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 5 LVLPGPRTRVL-GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+P P + P+++++ ++E SGTY C+ N G +RL V P
Sbjct: 163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213
Score = 38.5 bits (89), Expect = 2e-04
Identities = 23/124 (18%), Positives = 32/124 (25%), Gaps = 41/124 (33%)
Query: 49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------- 98
L ++TP + +A C+ T P D GP I W
Sbjct: 1 LSITTP------EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL 54
Query: 99 ---------------GRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134
GR S+ + + D G YQC + VA
Sbjct: 55 YSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKV-KKAPGVANKK 113
Query: 135 AELQ 138
L
Sbjct: 114 FLLT 117
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 74.9 bits (184), Expect = 5e-18
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 4/120 (3%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
DSG Y C + + V L V + V P L + +C
Sbjct: 53 SYRFKANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTPHL-EFQEGETIMLRCH- 108
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ D + +F++G+ + I G Y C + +
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT 168
Score = 53.3 bits (128), Expect = 8e-10
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
+ + PP ++V + S C+ I WF +G IP T + D
Sbjct: 7 LKLEPPWINVLQEDSVTLTCQGAR-SPESDSIQWFHNGNLIP--THTQPSYRFKANNNDS 63
Query: 117 GIYQCIARRSDG 128
G Y C ++
Sbjct: 64 GEYTCQTGQTSL 75
Score = 39.4 bits (92), Expect = 1e-04
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQV 51
P +I SG Y C+ + + V + V
Sbjct: 133 DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 75.7 bits (186), Expect = 6e-18
Identities = 33/156 (21%), Positives = 48/156 (30%), Gaps = 27/156 (17%)
Query: 3 PLLVLPGPRTRVLGP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV--------- 51
P+ + R V L I V A D G Y C S+ + +
Sbjct: 50 PVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTT 109
Query: 52 -STPYRVDVNPPLLSVHLDGSANFQCEI----TPYDSGPYLIAWFKDGRQIPGR----TS 102
P + V + + + +C P I W K +P TS
Sbjct: 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD------IRWRKVLEPMPSTAEISTS 163
Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L I + ED GIY+C A G + A +
Sbjct: 164 GAVLKIFNIQLEDEGIYECEAENIRG-KDKHQARIY 198
Score = 54.1 bits (130), Expect = 6e-10
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 8/87 (9%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVG 112
P + V C+ + W + + +L I V
Sbjct: 15 RPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVE 74
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQL 139
D+G Y C + S + L
Sbjct: 75 ASDKGNYSCFVSSPSITKSVFSKFIPL 101
Score = 49.5 bits (118), Expect = 4e-08
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
G +L I + ED G Y C + NI G+ + R+ V
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 77.6 bits (190), Expect = 7e-18
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 11 RTRVLGPILAIEGVTAEDSGT-YRCSSSNIGGEA-TAEVRLQVSTPYRVDVNPPLLSVHL 68
RV L I T+ DS Y C+ + G+ VR + P L H
Sbjct: 83 NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHD 142
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIA 123
+ C I I W+K+ +++ S +L+I+ ED G Y C
Sbjct: 143 KYGIDLYCGILYAKHYNN-ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYV 201
Query: 124 RRSDG 128
D
Sbjct: 202 HYDDV 206
Score = 75.3 bits (184), Expect = 4e-17
Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 26/161 (16%)
Query: 4 LLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD----- 58
L++ G + G L I EDSG Y C ++ + V
Sbjct: 169 ELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228
Query: 59 ----VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP-------------G 99
+ P ++V + AN C LI W I G
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288
Query: 100 RTSSTSLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQL 139
+ +L V E G Y C + + + L
Sbjct: 289 GITEATLYFENVTEEYIGNTYTCRG-HNYYFDKTLTTTVVL 328
Score = 45.6 bits (107), Expect = 1e-06
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 66 VHLDGSANFQCEITP-------YDSGPYLIAWFKDGRQIP---GRTSSTSLVINPVGRED 115
L + +C Y+ ++ W K G+ R + L I D
Sbjct: 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSND 100
Query: 116 RG-IYQCIARRSDGDVAQGSAELQ 138
Y C +GD QG
Sbjct: 101 SHRRYLCTVTTKNGDCVQGIVRSH 124
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 76.3 bits (187), Expect = 2e-17
Identities = 19/135 (14%), Positives = 36/135 (26%), Gaps = 12/135 (8%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
T + + + C + + L V V + + +L
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQR 247
Query: 71 -SANFQCEITPYDSGP--YLIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIAR 124
C+ D+ P W +P + T P+ G Y C A
Sbjct: 248 MDVKLTCKA---DANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT 304
Query: 125 RSDGDVAQGSAELQL 139
G S ++++
Sbjct: 305 NPIG---TRSGQVEV 316
Score = 54.4 bits (130), Expect = 1e-09
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 19 LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLD-----GSA 72
+ + + ED G Y C ++ G +++ L V + +
Sbjct: 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVL 153
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTS-LVINPVGREDRGIYQCI 122
C + P +++W + G + S + P + CI
Sbjct: 154 VATCT-SANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212
Query: 123 AR 124
Sbjct: 213 VN 214
Score = 45.9 bits (108), Expect = 1e-06
Identities = 12/122 (9%), Positives = 25/122 (20%), Gaps = 29/122 (23%)
Query: 44 TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP--YLIAWFKDGRQIP--- 98
T ++ V V + + C + W K
Sbjct: 5 TGGQQMGRDPSQVVQV-NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63
Query: 99 -----------------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 135
+ ++ ++ + ED G+Y C +
Sbjct: 64 AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQL 123
Query: 136 EL 137
L
Sbjct: 124 NL 125
Score = 41.3 bits (96), Expect = 4e-05
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
LP + + +GTY C ++N G + +V + ++ ++ +
Sbjct: 274 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEHHHH 329
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 73.9 bits (181), Expect = 2e-17
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 10/122 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L + G Y C E T + L V P + V+ C +
Sbjct: 69 LVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV 128
Query: 79 T--P-------YDSGPYLIAWFKDGR-QIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 128
P G +G S + V + + C+ +
Sbjct: 129 NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Query: 129 DV 130
+
Sbjct: 189 EA 190
Score = 36.9 bits (85), Expect = 0.001
Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 26/86 (30%)
Query: 71 SANFQCEITPYDSGP-YLIAWFKDGR-------------------------QIPGRTSST 104
GP ++WFK G I ++
Sbjct: 8 RVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTF 67
Query: 105 SLVINPVGREDRGIYQCIARRSDGDV 130
LV+ G Y C + + +V
Sbjct: 68 FLVVTAANISHDGNYLCRMKLGETEV 93
Score = 35.0 bits (80), Expect = 0.004
Identities = 6/49 (12%), Positives = 9/49 (18%), Gaps = 4/49 (8%)
Query: 1 MEPLLVLPGPRTRVLG----PILAIEGVTAEDSGTYRCSSSNIGGEATA 45
+EP + + C N EA
Sbjct: 144 VEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 74.2 bits (182), Expect = 3e-17
Identities = 32/144 (22%), Positives = 39/144 (27%), Gaps = 29/144 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-----STPYRVDVNPPLLSVHLDGSAN 73
L +E V D G Y C N G L V P P S + G
Sbjct: 78 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVE 137
Query: 74 FQCEITPYDSGPY-LIAWFKDGRQIPGRTSST-------------------SLVINPVGR 113
F C++ S I W K + + L + V
Sbjct: 138 FVCKVY---SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTE 194
Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
D G Y C G A SA L
Sbjct: 195 ADAGEYICKVSNYIG-QANQSAWL 217
Score = 51.4 bits (123), Expect = 8e-09
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 21/116 (18%)
Query: 36 SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWF 91
+ + E + R T + L +V + F+C P + W
Sbjct: 2 AEDFVSENSNNKRAPYWTN-TEKMEKRLHAVPAANTVKFRCPAGGNPMPT------MRWL 54
Query: 92 KDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
K+G++ R SL++ V D+G Y C+ G + L
Sbjct: 55 KNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 109
Score = 41.8 bits (98), Expect = 2e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
LA+ VT D+G Y C SN G+A L V
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK 222
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 73.8 bits (181), Expect = 4e-17
Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 40/155 (25%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN- 60
+ R + L I T D G Y + V L
Sbjct: 44 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 103
Query: 61 --------------------PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP 98
P ++++ + N C + P P ++W K+ + +
Sbjct: 104 QRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP---P-EVSWLKNEKALA 159
Query: 99 G---------RTSSTSLVINPVGREDRGIYQCIAR 124
+ IN V D G Y + +
Sbjct: 160 QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK 194
Score = 47.2 bits (112), Expect = 2e-07
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 10/76 (13%)
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGREDRGIYQCI 122
+T Y + W +G I R + L IN D+G Y
Sbjct: 19 GIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77
Query: 123 ARRSDGDVAQGSAELQ 138
Q + +L
Sbjct: 78 LFDGKT-GHQKTVDLS 92
Score = 46.8 bits (111), Expect = 3e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
I GV+ DSG Y N G T++ + V P
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 74.8 bits (183), Expect = 5e-17
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 13/140 (9%)
Query: 2 EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVN 60
P+ R L EDSG Y C N ++ + + N
Sbjct: 47 TPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYN 106
Query: 61 PPLLS---VHLDGSANFQCEITPYDSG----PYLIAWFKDGRQIPG-----RTSSTSLVI 108
+ + + G C + + W+KD + + L++
Sbjct: 107 AQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIV 166
Query: 109 NPVGREDRGIYQCIARRSDG 128
V + RG Y C A +
Sbjct: 167 MNVAEKHRGNYTCHASYTYL 186
Score = 63.2 bits (153), Expect = 8e-13
Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 36/167 (21%)
Query: 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVN 60
L+L + L + V + G Y C +S T +
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE-NKPTR 208
Query: 61 PPLLS-------VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------- 100
P ++S V L C +T W +G I
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVT-GQLSDI-AYWKWNGSVIDEDDPVLGEDYYSVEN 266
Query: 101 -------TSSTSLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL 139
T T L I+ + + + C A+ + G + +L
Sbjct: 267 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG-IDAAYIQLIY 312
Score = 53.2 bits (127), Expect = 3e-09
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 11/91 (12%)
Query: 57 VDVNPPLLSVHLDG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLV 107
+ ++ V C + P + I W+KD + P T L
Sbjct: 7 KEREEKIILVSSANEIDVRPCPLNPNEH-KGTITWYKDDSKTPVSTEQASRIHQHKEKLW 65
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
P ED G Y C+ R S + +
Sbjct: 66 FVPAKVEDSGHYYCVVRNSSY-CLRIKISAK 95
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 72.7 bits (178), Expect = 2e-16
Identities = 31/145 (21%), Positives = 40/145 (27%), Gaps = 30/145 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-----STPYRVDVNPPLLSVHLDGSAN 73
L +E V D G Y C N G L V P P + L
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 133
Query: 74 FQCEITPYDSGPYL-IAWFKDGRQIPGR--------------------TSSTSLVINPVG 112
F C++ S I W K + + L + V
Sbjct: 134 FHCKVY---SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
Query: 113 REDRGIYQCIARRSDGDVAQGSAEL 137
D G Y C A G VA+ + L
Sbjct: 191 ERDGGEYLCRATNFIG-VAEKAFWL 214
Score = 61.1 bits (148), Expect = 3e-12
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 19/110 (17%)
Query: 43 ATAEVRLQVSTPYRVD---VNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQI 97
A + + PY ++ LL+V + F+C P S I+W K+GR+
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPS----ISWLKNGREF 56
Query: 98 PG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
G R SLV+ V DRG Y C+ G + + L
Sbjct: 57 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLD 105
Score = 44.5 bits (105), Expect = 2e-06
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + V+ D G Y C ++N G A L V P
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 71.0 bits (173), Expect = 4e-16
Identities = 15/134 (11%), Positives = 40/134 (29%), Gaps = 13/134 (9%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L + V+ + +Y C+++ + +++++ + + + +C
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCS 114
Query: 78 ITPYDSGPYL-IAWFKDGRQIP------------GRTSSTSLVINPVGREDRGIYQCIAR 124
+ L I K + T S + PV + + C A+
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174
Query: 125 RSDGDVAQGSAELQ 138
++ Q
Sbjct: 175 LHIDEMDSVPTVRQ 188
Score = 34.4 bits (78), Expect = 0.008
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 55 YRVDVNP-PLLSVHLDGSANFQCEITPYDSGPYLIAWFKD-----GRQIPGRTSSTSLVI 108
++++ P + S + C T +S +W ++ ++++L +
Sbjct: 1 FKIETTPESRYLAQIGDSVSLTCSTTGCESPF--FSWRTQIDSPLNGKVTNEGTTSTLTM 58
Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
NPV + Y C A + +Q+
Sbjct: 59 NPVSFGNEHSYLCTATCESR---KLEKGIQV 86
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 72.1 bits (176), Expect = 5e-16
Identities = 25/141 (17%), Positives = 40/141 (28%), Gaps = 13/141 (9%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVSTPYRVDVNPPL 63
T + + + + D C + E V L V P V ++
Sbjct: 166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYD 225
Query: 64 LSVHLDG-SANFQCEIT--PYDSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGI 118
+ +L A C+ P P W +P L+I PV +
Sbjct: 226 NNWYLGQNEATLTCDARSNP---EPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTT 282
Query: 119 YQCIARRSDGDVAQGSAELQL 139
C + G AEL +
Sbjct: 283 LICNVTNALG---ARQAELTV 300
Score = 65.9 bits (160), Expect = 9e-14
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 19 LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L + G+ ED G Y C + G + ++ L+V + + + + +C
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 140
Query: 78 ITPYDSGPYLIAWFKDGRQIPGR-----------TSSTSLVINPVGREDRGIYQCIAR 124
T I W D +P T ++ ++ P + D C
Sbjct: 141 STGGRPPAQ-ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVE 197
Score = 44.3 bits (104), Expect = 4e-06
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
P G L I V + T C+ +N G AE+ +QV
Sbjct: 261 PFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302
Score = 43.9 bits (103), Expect = 4e-06
Identities = 16/122 (13%), Positives = 28/122 (22%), Gaps = 38/122 (31%)
Query: 46 EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP---YLIAWFKDGRQIPGRT- 101
+V +Q P + L S C + + + W + G
Sbjct: 1 DVVVQA---------PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVF 51
Query: 102 -------------------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
+ SL + + ED G Y C+
Sbjct: 52 HQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIW 111
Query: 137 LQ 138
L+
Sbjct: 112 LR 113
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 69.5 bits (170), Expect = 8e-16
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS-ANFQCE 77
L I+ + +D Y+ S + G+ E + ++ + CE
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL----KIQERVSKPKISWTCINTTLTCE 123
Query: 78 ITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
+ +G + ++DG+ + S ++ + ++C A
Sbjct: 124 VM---NGTDPELNLYQDGKHLK---LSQRVITHKWTTSLSAKFKCTAG 165
Score = 41.4 bits (97), Expect = 2e-05
Identities = 11/78 (14%), Positives = 19/78 (24%), Gaps = 17/78 (21%)
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------GR---TSSTSLVINP 110
L N I W K + + +L I
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72
Query: 111 VGREDRGIYQCIARRSDG 128
+ +D+ IY+ + G
Sbjct: 73 LKTDDQDIYKVSIYDTKG 90
Score = 32.5 bits (74), Expect = 0.031
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ T S ++C++ N + ++ +
Sbjct: 147 VITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCP 180
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 67.8 bits (165), Expect = 2e-14
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 12/138 (8%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
E A +GTY CS+SN T+ + + V P ++ + L
Sbjct: 48 FNEMVENKKNEWIQEKAEATRTGTYTCSNSN---GLTSSIYVFVRDPAKLFLVGLPLFGK 104
Query: 68 LDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRTS------STSLVINPVGREDRGIYQ 120
D A +C +T D + + DG+ +P + + + N R +
Sbjct: 105 EDSDALVRCPLT--DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR 162
Query: 121 CIARRSDGDVAQGSAELQ 138
C A+R + L+
Sbjct: 163 CAAQRDGTWLHSDKFTLK 180
Score = 61.3 bits (148), Expect = 4e-12
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 21/121 (17%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAE-----VRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
A RC++ G ++ VR + V V + + C I
Sbjct: 153 KRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTI 212
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTS---------------STSLVINPVGREDRGIYQCIA 123
+ W K Q +L I+ +D G++ C A
Sbjct: 213 KDVST-SVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYA 271
Query: 124 R 124
Sbjct: 272 N 272
Score = 42.4 bits (99), Expect = 1e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I +DSG + C ++N G A L+V
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 37.4 bits (86), Expect = 8e-04
Identities = 9/77 (11%), Positives = 15/77 (19%), Gaps = 7/77 (9%)
Query: 53 TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR-QIPGRTSSTSLVINPV 111
+P + L V + + C P + W +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTC------IDPDFVRWTFKTYFNEMVENKKNEWIQEKA 64
Query: 112 GREDRGIYQCIARRSDG 128
G Y C
Sbjct: 65 EATRTGTYTCSNSNGLT 81
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 66.6 bits (162), Expect = 2e-14
Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGE-ATAEVRLQVST-PYRVDVNPPLLSVHLDGSANFQC 76
L + +T +D G Y ++ A VR V + + +V S C
Sbjct: 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTC 132
Query: 77 EITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIAR 124
+ I W + + + +++ L I+P+ RED G YQC
Sbjct: 133 LS---NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183
Score = 41.2 bits (96), Expect = 3e-05
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVS-TPYRVDVN 60
IL I+ + ED+G Y+C SN + ++L + P+ +
Sbjct: 162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHHHH 208
Score = 37.3 bits (86), Expect = 7e-04
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 46 EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPY--DSGPYLIAWFKDGRQIPGRTSS 103
V L V + + + + + EI + +S GR+I S+
Sbjct: 16 NVLLLVHN---LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREII--YSN 70
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
SL+ + +D G+Y + Q +
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRF 104
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 64.3 bits (156), Expect = 8e-14
Identities = 25/142 (17%), Positives = 41/142 (28%), Gaps = 20/142 (14%)
Query: 12 TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
+ G + + + G Y C E +Q+ P RV ++ +
Sbjct: 44 DALPGQKTEFKVDSDDQWGEYSCVFLP---EPMGTANIQLHGPPRVKAVKSSEHINEGET 100
Query: 72 ANFQCEITPYDSGPYLIAWFKDGR--------------QIPGRTSSTSLVINPVGRE-DR 116
A C+ AW+K + + L I + E D
Sbjct: 101 AMLVCKSESVPP-VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 159
Query: 117 GIYQCIARRSDGDVAQGSAELQ 138
G Y+C S G Q L+
Sbjct: 160 GQYRCNGTSSKG-SDQAIITLR 180
Score = 52.7 bits (126), Expect = 2e-09
Identities = 14/86 (16%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-GRTSSTSLVINPVGREDRGIYQCIAR 124
L C + + W K G + + G Y C+
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFL 69
Query: 125 RSDGDVAQGSAELQLGGTRNIKHYNN 150
G+A +QL G +K +
Sbjct: 70 PE----PMGTANIQLHGPPRVKAVKS 91
Score = 38.9 bits (90), Expect = 2e-04
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 19 LAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQV 51
L IE + E D G YRC+ ++ G A + L+V
Sbjct: 148 LHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 66.6 bits (161), Expect = 8e-14
Identities = 32/142 (22%), Positives = 46/142 (32%), Gaps = 28/142 (19%)
Query: 12 TRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
T L + I + D+G Y C + + LQV P P L+ L GS
Sbjct: 180 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGS 234
Query: 72 ANFQCEITPYDSG------------PYLIAWFKDGRQIP---GRTSST--------SLVI 108
F C + P + + G++ P GR S+VI
Sbjct: 235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVI 294
Query: 109 NPVGREDRGIYQCIARRSDGDV 130
+ +ED G Y C A
Sbjct: 295 TGLRKEDAGRYLCGAHSDGQLQ 316
Score = 63.9 bits (154), Expect = 7e-13
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 25/136 (18%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
++ I ++ +DSG Y+C + +V L+VS + + + +V L + C
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCP 135
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSSTS------------------------LVINPVGR 113
++ + +K P +S +VIN +
Sbjct: 136 FKT-ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194
Query: 114 EDRGIYQCIARRSDGD 129
D G Y C A
Sbjct: 195 SDAGQYLCQAGDDSNS 210
Score = 61.2 bits (147), Expect = 6e-12
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 18/138 (13%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
+ + +T+ D+G Y C ++ T + + V + + L + C
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNV-TAVLGETLKVPCH 465
Query: 78 ITPYDSGP--YLIAWFKDGRQIPGRT---------------SSTSLVINPVGREDRGIYQ 120
S Y W G Q SL +N V R D G Y
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYW 525
Query: 121 CIARRSDGDVAQGSAELQ 138
C ++ + +
Sbjct: 526 CGVKQGHFYGETAAVYVA 543
Score = 57.3 bits (137), Expect = 1e-10
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 31/142 (21%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ----VSTPYRVDVNPPLLSVHLDGSAN 73
+ I G+ ED+G Y C + + G V+ + +P ++ S
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIP------------------GRTS--------STSLV 107
C +S + W GR S + +++
Sbjct: 351 VLCPYNRKES-KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVI 409
Query: 108 INPVGREDRGIYQCIARRSDGD 129
+N + D G Y C+
Sbjct: 410 LNQLTSRDAGFYWCLTNGDTLW 431
Score = 35.0 bits (79), Expect = 0.006
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 25/97 (25%)
Query: 61 PPLLSVHLDGSANFQCEITP-YDSGPYLIAWFKDGRQIP----------------GRTSS 103
P ++ S + C P + W + G + GR +
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 104 T--------SLVINPVGREDRGIYQCIARRSDGDVAQ 132
T + I + ++D G Y+C + ++
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSF 103
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 65.7 bits (159), Expect = 8e-14
Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 37/153 (24%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L ++ V D G Y C + +++ + P L V + + +C I
Sbjct: 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV---LPEEPRDLRVRVGDTTQMRCSI 142
Query: 79 T-PYDSGPYLIAWFKDGRQIP------------------------GRTSST--------S 105
+ + W R T S
Sbjct: 143 QSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGS 202
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ + V D+GIY C + ++ + L
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLH 234
Score = 44.9 bits (105), Expect = 2e-06
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
+ ++ V D G Y CS E+ + L V P
Sbjct: 203 IKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246
Score = 40.6 bits (94), Expect = 6e-05
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 30/113 (26%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGR------------------- 95
+ V+ P L VH+ S C + + + W
Sbjct: 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66
Query: 96 -QIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+ R+ SL++ V + D GIY C R + ++L
Sbjct: 67 GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEI-RLKNESMVMKKPVEL 118
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 63.8 bits (155), Expect = 1e-13
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 12/112 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I+ + EDS TY C + EV+L V + + N + S E
Sbjct: 70 LIIKNLKIEDSDTYICEVED----QKEEVQLLV---FGLTANSDT-HLLQGQSLTLTLES 121
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
P S P + + +L ++ + +D G + C ++ V
Sbjct: 122 PPGSS-PS-VQCRSPRGKN--IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV 169
Score = 44.6 bits (105), Expect = 2e-06
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
P + G L++ + +DSGT+ C+ + ++ + V
Sbjct: 134 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177
Score = 37.3 bits (86), Expect = 7e-04
Identities = 11/86 (12%), Positives = 18/86 (20%), Gaps = 27/86 (31%)
Query: 70 GSANFQCEITPYDSGPYLIAWFK-------------------------DGRQIPGRTSST 104
+ C + W D R+ +
Sbjct: 11 DTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 105 SLVINPVGREDRGIYQCIARRSDGDV 130
L+I + ED Y C +V
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEV 94
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 62.9 bits (153), Expect = 2e-13
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 23/135 (17%)
Query: 21 IEGVTA-EDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP----PL--LSVHLDGSAN 73
I G++ + SG+ S N + L+ + V P + + V +A
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 74 FQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCI 122
F C++ P + WFKD + + SL I+ V +D Y C
Sbjct: 61 FDCKVEGYP----DPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 123 ARRSDGDVAQGSAEL 137
A S G A +AEL
Sbjct: 117 AVNSLG-EATCTAEL 130
Score = 45.2 bits (107), Expect = 6e-07
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I V +D Y C + N GEAT L V T
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 63.4 bits (154), Expect = 2e-13
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I+ +T +DSGTY + + G L + V+ P++ +A CE+
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM--VSKPMIYWE-CSNATLTCEV 119
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
+ + ++ + S ++ R ++C A
Sbjct: 120 L--EGTDVELKLYQGKEHLR---SLRQKTMSYQWTNLRAPFKCKAV 160
Score = 43.0 bits (101), Expect = 6e-06
Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 15/84 (17%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP------------GR---TSST 104
+ + L N + W + + G ++
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 105 SLVINPVGREDRGIYQCIARRSDG 128
L I + R+D G Y ++G
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNG 85
Score = 25.7 bits (56), Expect = 5.9
Identities = 2/37 (5%), Positives = 9/37 (24%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ ++C + N + + +
Sbjct: 139 LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 63.3 bits (153), Expect = 7e-13
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 12/122 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN---PPLLSVHLDGSANFQ 75
L + T+E++G+Y+ + + + E + + + VN P V
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELH 113
Query: 76 CEIT------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129
+ P D+ +W K I + + I + G+Y D
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQDITIQEFTADKNGVYTVKVWGESED 170
Query: 130 VA 131
A
Sbjct: 171 SA 172
Score = 57.1 bits (137), Expect = 1e-10
Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 26/139 (18%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL--LSVHLDGSAN 73
+ I+ TA+ +G Y ++ A ++ + +V L +
Sbjct: 144 TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEIS 203
Query: 74 FQCEIT----------PYDSGPYLIAWFKDGRQIPGRTSST--------------SLVIN 109
++ P + Y ++G+ P S L
Sbjct: 204 LNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKE 263
Query: 110 PVGREDRGIYQCIARRSDG 128
+D + C+A+
Sbjct: 264 SATYDDTAKFWCVAKLYQQ 282
Score = 45.6 bits (107), Expect = 1e-06
Identities = 11/83 (13%), Positives = 22/83 (26%), Gaps = 4/83 (4%)
Query: 57 VDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 114
V + + W KD + T++ L + E
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT--LTVADATSE 62
Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
+ G Y+ + +D + S
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVF 85
Score = 32.5 bits (73), Expect = 0.039
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDV 59
L E T +D+ + C + + T EV S ++V
Sbjct: 260 LFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEV 302
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 62.8 bits (152), Expect = 9e-13
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 19/129 (14%)
Query: 27 EDSGTYRCSSSNIGGEATAEVRL---QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDS 83
+ +Y C ++ E ++ + V VN V + C + +
Sbjct: 151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI--GN 208
Query: 84 GPYLIAWFKDGRQIP-------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
W ++ + L I ED G Y C S D
Sbjct: 209 EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDH 268
Query: 131 AQGSAELQL 139
+ +
Sbjct: 269 QD-EKAINI 276
Score = 60.5 bits (146), Expect = 6e-12
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRV----DVNPPLLSVHLDG 70
+L + +T D+G Y C+ ++ G + + V P D + +
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111
Query: 71 SANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129
C +T P L + + + G + Y C D +
Sbjct: 112 EITIPCRVT----DPQLVVTLHEKKGDVALPVPY-DHQRGFSGIFEDRSYICKTTIGDRE 166
Query: 130 V 130
V
Sbjct: 167 V 167
Score = 43.5 bits (102), Expect = 5e-06
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDR 116
L +++ + C SG + W + ++ P + S+ L + + D
Sbjct: 10 LVLNVSSTFVLTC------SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDT 63
Query: 117 GIYQCIARRSDGDVAQGSAELQL 139
G Y C S G L +
Sbjct: 64 GEYFCTHNDSRGLETDERKRLYI 86
Score = 40.5 bits (94), Expect = 8e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
IL I EDSGTY C+ + + E + +
Sbjct: 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 62.9 bits (152), Expect = 1e-12
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I+ + EDS TY C + EV+L V + + N + S E
Sbjct: 69 LIIKNLKIEDSDTYICEVED----QKEEVQLLV---FGLTANSD-THLLQGQSLTLTLES 120
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
P S P + + +L ++ + +D G + C + + ++
Sbjct: 121 PP-GSSPS-VQCRSPRGKN--IQGGKTLSVSQLELQDSGTWTCTV-LQNQKKVEFKIDI 174
Score = 59.0 bits (142), Expect = 3e-11
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 18/122 (14%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L SG + G+ EV L V N CE
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA-------------TQLQKNLTCE 304
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
+ S +++ + ++ S V + G++QC+ SD + +
Sbjct: 305 VWGPTSPKLMLSLKLENKEAK---VSKREKAVWVLNPEAGMWQCLL--SDSGQVLLESNI 359
Query: 138 QL 139
++
Sbjct: 360 KV 361
Score = 57.5 bits (138), Expect = 1e-10
Identities = 20/153 (13%), Positives = 39/153 (25%), Gaps = 28/153 (18%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV------------STPY 55
P + G L++ + +DSGT+ C+ + ++ + V
Sbjct: 133 PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGE 192
Query: 56 RVDVNPPLL----SVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------- 104
+V+ + PL + G +Q E + T
Sbjct: 193 QVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKK 252
Query: 105 -----SLVINPVGREDRGIYQCIARRSDGDVAQ 132
+L G G + Q
Sbjct: 253 LPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQ 285
Score = 37.9 bits (87), Expect = 7e-04
Identities = 11/86 (12%), Positives = 18/86 (20%), Gaps = 27/86 (31%)
Query: 70 GSANFQCEITPYDSGPYLIAWFK-------------------------DGRQIPGRTSST 104
+ C + W D R+ +
Sbjct: 10 DTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 67
Query: 105 SLVINPVGREDRGIYQCIARRSDGDV 130
L+I + ED Y C +V
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQKEEV 93
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 60.6 bits (147), Expect = 3e-12
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 20/119 (16%)
Query: 30 GTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIA 89
TY +SS + + ++ P V N CE+ I+
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAV-------YTWEGNQVNITCEVFA-YPSAT-IS 51
Query: 90 WFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
WF+DG+ +P S++ L + P D G Y C A + L
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA-VNRIGQESLEFILV 109
Score = 42.9 bits (101), Expect = 9e-06
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + + D G Y C++ N G+ + E L +
Sbjct: 77 YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 57.9 bits (140), Expect = 3e-12
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG----RTSSTS 105
+ + P+ V V L VH +C + D I W +DG Q+ R +
Sbjct: 5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQ-SINWLRDGVQLVESNRTRITGEE 61
Query: 106 LVINPVGREDRGIYQCIARRSDG 128
+ + D G+Y C+ G
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSG 84
Score = 53.3 bits (128), Expect = 2e-10
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
++ RTR+ G + + DSG Y C +S+ G T + VS
Sbjct: 49 LVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 61.3 bits (148), Expect = 5e-12
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 24/132 (18%)
Query: 9 GPRTRVLGPILAIEGVTAE-DSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH 67
+ L + VT++ + C + N G A V++ VS P V ++ + H
Sbjct: 204 MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHH 263
Query: 68 LDGSANFQCEITPYDSGPY-LIAWFKDGRQIPGRTSST---------------SLVINPV 111
C D P + W +G + + L +N
Sbjct: 264 W-------CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQP 316
Query: 112 GREDRGIYQCIA 123
+ G Y +A
Sbjct: 317 THVNNGNYTLLA 328
Score = 44.3 bits (104), Expect = 3e-06
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + T ++G Y ++N G+A+A +
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346
Score = 41.6 bits (97), Expect = 3e-05
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 9/76 (11%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVI 108
+ V P SV + +C++ G W + S +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEG--RGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217
Query: 109 NPVGREDRGIYQCIAR 124
N +R C A
Sbjct: 218 NVTSDLNRKNVTCWAE 233
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 59.4 bits (144), Expect = 5e-12
Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDG 70
L I + +G YRCS N + ++ L + + P LS V G
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVF----AKPSLSAQPGPAVSSGG 109
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRS 126
QC+ G A +K+G P + S I V G Y+C + S
Sbjct: 110 DVTLQCQ---TRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166
Query: 127 DG 128
Sbjct: 167 RD 168
Score = 32.9 bits (75), Expect = 0.018
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 11/74 (14%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 114
P L L+ +C+ P G L K L I + R
Sbjct: 8 KPSLQALPSSLVPLEKPVTLRCQGPP---GVDLYRLEKLSSSRYQ--DQAVLFIPAMKRS 62
Query: 115 DRGIYQCIARRSDG 128
G Y+C +
Sbjct: 63 LAGRYRCSYQNGSL 76
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 57.4 bits (139), Expect = 5e-12
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPV 111
++ V P +V G+ CE+ P I W KDG +P S L++ +
Sbjct: 12 QLVVEPEGGAVAPGGTVTLTCEVPAQPSPQ------IHWMKDGVPLPLPPSPV-LILPEI 64
Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQL 139
G +D+G Y C+A S Q S + +
Sbjct: 65 GPQDQGTYSCVATHSSHGP-QESRAVSI 91
Score = 40.9 bits (96), Expect = 1e-05
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTP 54
P+L + + +D GTY C +++ + + V + + P
Sbjct: 56 SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 59.8 bits (144), Expect = 6e-12
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 20/132 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV---STPYRVDVNPP-LLSVHLDGSANF 74
I +G C + + + + V Y V ++P + + +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125
Query: 75 QCEITPYDSGPYLIAWFKDGRQIP----------------GRTSSTSLVINPVGREDRGI 118
C + W + + ++L I+ V R D+G+
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185
Query: 119 YQCIARRSDGDV 130
Y C A
Sbjct: 186 YTCAASSGLMTK 197
Score = 43.2 bits (101), Expect = 5e-06
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
G + L I+GVT D G Y C++S+ ++V
Sbjct: 162 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
Score = 36.7 bits (84), Expect = 0.001
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVI 108
++ + + + C + + L A + + R +P S I
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTI 68
Query: 109 NPVGREDRGIYQCIARRSDGDV 130
G+ C A+ +D
Sbjct: 69 PSYMISYAGMVFCEAKINDESY 90
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 60.1 bits (145), Expect = 7e-12
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 7/130 (5%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
E + C+ + + + +V V
Sbjct: 55 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 114
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS-DGD 129
+CE P +G L++ ++ + C A G
Sbjct: 115 EVTVKCEAHP------RAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQ 168
Query: 130 VAQGSAELQL 139
+ + +L
Sbjct: 169 LIHKNQTREL 178
Score = 50.4 bits (120), Expect = 2e-08
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 17/138 (12%)
Query: 9 GPRTRVLGPILAIEGVTAEDSG-TYRCSSSN-IGGEATAE---VRLQVSTPYRVDV--NP 61
P + + T ED+G ++ CS++ + G+ + L+V R+D P
Sbjct: 133 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 192
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC 121
+ + C+ + KDG V R+ G Y C
Sbjct: 193 GNWTWPENSQQTPMCQAWGN--PLPELKCLKDGTFPL-----PIGESVTVTRDLEGTYLC 245
Query: 122 IARRSDGDVAQGSAELQL 139
AR + G+V + E+ +
Sbjct: 246 RARSTQGEV---TREVTV 260
Score = 40.8 bits (95), Expect = 4e-05
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
PI VT + GTY C + + GE T EV + V +P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 57.0 bits (138), Expect = 1e-11
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 22/111 (19%)
Query: 38 NIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQ 96
+ G L V + P + +A +CE+ S + W+K
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCEL----SKMAPVEWWKGHET 57
Query: 97 IP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
+ G L I + ED G Y C+ + + SA L
Sbjct: 58 LRDGDRHSLRQDGARCE--LQIRGLVAEDAGEYLCMCGK-----ERTSAML 101
Score = 32.3 bits (74), Expect = 0.016
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I G+ AED+G Y C G+ L V
Sbjct: 74 ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAM 106
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 59.5 bits (143), Expect = 1e-11
Identities = 28/160 (17%), Positives = 42/160 (26%), Gaps = 41/160 (25%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIG-----GEATAEVRLQV---STPYRVDVNPP-LLSV 66
P L + V +D G Y C + G V L+V + V V+ ++ V
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148
Query: 67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------------------GR 100
C T D + W+ GR
Sbjct: 149 DEGNDITMTCPCT--DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGR 206
Query: 101 TS---STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
S + +LVI D G C G++
Sbjct: 207 ASFSGARNLVIRAAKITDAGRVWCELATGQGEL-DADRSS 245
Score = 41.4 bits (96), Expect = 3e-05
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I D+G C + GE A+ +
Sbjct: 215 LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 37.6 bits (86), Expect = 6e-04
Identities = 18/118 (15%), Positives = 27/118 (22%), Gaps = 38/118 (32%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGP-YLIAWFKDGRQIP----------------- 98
V + VH G+ C + +I+W K
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 99 ---------------GRTSST-----SLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
GR S +L + V +D G Y C + G
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 58.4 bits (141), Expect = 1e-11
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I V+ ED G Y + + ++ ++V V+ P++ +A CE+
Sbjct: 71 LRIYNVSKEDRGDYYMRMLHETED-QWKITMEVYEM----VSKPMIYWECS-NATLTCEV 124
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
+ + ++ + S ++ R ++C A
Sbjct: 125 L--EGTDVELKLYQGKEHL---RSLRQKTMSYQWTNLRAPFKCKAV 165
Score = 33.7 bits (77), Expect = 0.012
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 58 DVNPPLLSVHLDGSANFQCEITP----------YDSGPYLIAWFKDGRQIP------GR- 100
D + P ++ + P + + ++ +F +G++ R
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 101 ---TSSTSLVINPVGREDRGIYQC 121
++ +L I V +EDRG Y
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYM 86
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 58.8 bits (142), Expect = 2e-11
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 19/131 (14%)
Query: 21 IEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDGSA 72
I + + +G Y C E + + L V+ Y P LS V
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYD----TPTLSVHPGPEVISGEKV 119
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDG 128
F C + D+ + K+GR + + PV RG Y+C ++
Sbjct: 120 TFYCRL---DTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 176
Query: 129 DVAQGSAELQL 139
+ S ++L
Sbjct: 177 AWSFPSEPVKL 187
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 16/81 (19%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLV 107
P + + C+ G +G R +
Sbjct: 7 KPFIWAEPHFMVPKEKQVTICCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFY 63
Query: 108 INPVGREDRGIYQCIARRSDG 128
I + G Y CI R +
Sbjct: 64 IPDMNSRMAGQYSCIYRVGEL 84
Score = 33.0 bits (75), Expect = 0.025
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 21 IEGVTAEDSGTYRCSSSN---IGGEATAEVRLQVS-TPYRVDVNPPLLSVHLDGSANFQC 76
+ VT GTYRC S + V+L V+ + P + D +
Sbjct: 156 LGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLL 215
Query: 77 EITPYDSGPYLIAW 90
T W
Sbjct: 216 T-TETGLQKDHALW 228
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 59.1 bits (142), Expect = 3e-11
Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST-PYRVDVNPPLLSVHLDGSANFQCE 77
E ++ C S+ G++TA+ L V P RV++ P + + +C+
Sbjct: 50 KVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQ 109
Query: 78 ITPYDSGPYL-IAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIAR 124
+ L + + +++ + + + + C
Sbjct: 110 VEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Score = 54.5 bits (130), Expect = 1e-09
Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-IGGE---ATAEVRLQVSTPYRVDV--NPPLLSVHLDGSA 72
L ++ ++ ++ CS++ + G+ L+V R+D P + +
Sbjct: 329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388
Query: 73 NFQCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
C+ P + KDG V R+ G Y C AR + G
Sbjct: 389 TPMCQAWGNP----LPELKCLKDGTF-----PLPIGESVTVTRDLEGTYLCRARSTQG-- 437
Query: 131 AQGSAELQL 139
+ + E+ +
Sbjct: 438 -EVTREVTV 445
Score = 41.4 bits (96), Expect = 4e-05
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
PI VT + GTY C + + GE T EV + V +P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 36.4 bits (83), Expect = 0.002
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 15/130 (11%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPL---------LSVHL 68
+ + C + E+ S PY++ + +
Sbjct: 143 TTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEV 202
Query: 69 DGSANFQCEIT-PYDSGPYLIAWFKDGRQIP-----GRTSSTSLVINPVGREDRGIYQCI 122
D C + + + +++ G S ++ V ED G +
Sbjct: 203 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 123 ARRSDGDVAQ 132
G+ +Q
Sbjct: 263 CAVILGNQSQ 272
Score = 35.2 bits (80), Expect = 0.005
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
V+P + + GS C + I +++ ++ V ++
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNR-KVYELSNVQED 60
Query: 117 GIYQCIARRSDGDVAQGSAELQL 139
C + DG Q +A+ L
Sbjct: 61 SQPMCYSNCPDG---QSTAKTFL 80
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 57.6 bits (139), Expect = 4e-11
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 18/120 (15%)
Query: 21 IEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDGSA 72
I+ + A +G Y+C + + L V+ Y P LS + +
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLY----GKPFLSADRGLVLMPGENI 123
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRSDG 128
+ C + K+G + S + + PV GIY+C +
Sbjct: 124 SLTCSSAHI--PFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRS 181
Score = 34.8 bits (80), Expect = 0.006
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDG------RQIPGRTSST-SLV 107
P +S LDGS QC+ ++ + K+ R++ + V
Sbjct: 9 MPFISAKSSPVIPLDGSVKIQCQ-AIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFV 67
Query: 108 INPVGREDRGIYQCIARRSDG 128
I+ + G YQC R
Sbjct: 68 IDHMDANKAGRYQCQYRIGHY 88
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 57.7 bits (139), Expect = 4e-11
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I V +D+G YRC S GG + ++V+ PY L+ + C+
Sbjct: 82 LQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA 140
Query: 79 TPYDSGPYL-IAWFK-DGRQIPGRTS-------------STSLVINPVGREDRGIYQCIA 123
Y P + W D + + G+T+ +++L IN I+ C
Sbjct: 141 EGY---PKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINT---TTNEIFYCTF 194
Query: 124 RRSDGDV 130
RR D +
Sbjct: 195 RRLDPEE 201
Score = 40.8 bits (95), Expect = 5e-05
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 31/113 (27%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPY---DSGPYLIAWFKDGRQIP-------------- 98
V V L V + +C+ D ++ W + + I
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 99 ---GRTS---------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
R + +L I V +D G+Y+C+ S G +++
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKV 113
Score = 33.1 bits (75), Expect = 0.022
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+ + + C+ + E L +
Sbjct: 182 INTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 54.7 bits (132), Expect = 8e-11
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 17/103 (16%)
Query: 46 EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG-- 99
++ + + N + + S C + P I WFKD +
Sbjct: 2 QLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQ------IMWFKDNETLVEDS 55
Query: 100 ----RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ + +L I V +ED G+Y C A G A+ A
Sbjct: 56 GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-CAKVEAFFI 97
Score = 45.4 bits (108), Expect = 2e-07
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I V ED G Y C + ++ G A E +
Sbjct: 66 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 54.3 bits (131), Expect = 8e-11
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--GRT--SSTSLV 107
S+ V VH +C + I W +DG Q+ RT + +
Sbjct: 2 SSG-SSGVEVESFLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLAESNRTRITGEEVE 57
Query: 108 INPVGREDRGIYQCIARRSDG 128
+ D G+Y C+ G
Sbjct: 58 VQDSVPADSGLYACVTSSPSG 78
Score = 52.4 bits (126), Expect = 6e-10
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 6 VLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ RTR+ G + ++ DSG Y C +S+ G T + VS
Sbjct: 43 LAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 57.6 bits (139), Expect = 9e-11
Identities = 27/141 (19%), Positives = 39/141 (27%), Gaps = 27/141 (19%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCS-----SSNIGGEATAEVRLQVSTPYRVDVNPP 62
P R+ + VT +G Y C S + V + V+ +R P
Sbjct: 65 PIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHR----KP 120
Query: 63 LLSVHLD------GSANFQCEITPYDSGPYLIAWFKDG---------RQIPGRTSSTSLV 107
L H QC D K+G QI S +
Sbjct: 121 SLLAHPGPLVKSGERVILQCWS---DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS 177
Query: 108 INPVGREDRGIYQCIARRSDG 128
I P+ G Y+C +
Sbjct: 178 IGPMMLALAGTYRCYGSVTHT 198
Score = 47.2 bits (112), Expect = 3e-07
Identities = 19/124 (15%), Positives = 30/124 (24%), Gaps = 21/124 (16%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEA-------TAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
I + +GTYRC S ++ + P V S
Sbjct: 178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVT 237
Query: 74 FQCEITPYDSGPYLIAWFKDGR---------QIPGRTSSTSLVINPVGREDRGIYQCIAR 124
C S + ++G + RT + P G Y+C
Sbjct: 238 LSCSS---RSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPA--THGGTYRCFGS 292
Query: 125 RSDG 128
Sbjct: 293 FRHS 296
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 53.9 bits (130), Expect = 9e-11
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTSSTSLV 107
+ ++ V P + + QC P+ WFK+ + T +
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPH------YQWFKNELPLTHETKKL-YM 53
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ V E +G Y C E+
Sbjct: 54 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 38.5 bits (90), Expect = 7e-05
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQVSTP 54
+ + V E GTY C N ++ V + +
Sbjct: 49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 54.7 bits (132), Expect = 1e-10
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG- 99
G + + +Q + + + V SA F+C I+P + P + WF D +
Sbjct: 1 GSSGSSGLVQGRRV-HIIEDLEDVDVQEGSSATFRCRISPANYEP--VHWFLDKTPLHAN 57
Query: 100 --------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
L + + +D G A GD + SA L
Sbjct: 58 ELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GD-QRASAAL 98
Score = 33.5 bits (77), Expect = 0.007
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + + +DSGT + G+ A L+V+
Sbjct: 72 LTLRQLALKDSGTIYFEA----GDQRASAALRVTEK 103
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 55.3 bits (132), Expect = 2e-10
Identities = 21/156 (13%), Positives = 34/156 (21%), Gaps = 39/156 (25%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEA--------------------------TAEVRLQV 51
+ + G Y+C S + A+
Sbjct: 50 KWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSD 109
Query: 52 STPYRVDVNPPLLSVHLDG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------S 102
+ V + G + C P I W + + I G
Sbjct: 110 GNEEMGGITQTPYKVSISGTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDE 165
Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ E G Y C R S + A L+
Sbjct: 166 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201
Score = 45.7 bits (107), Expect = 9e-07
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 88 IAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
I WFKDG+ I + ++ RG+YQC ++ Q
Sbjct: 32 ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQ 77
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 54.7 bits (131), Expect = 4e-10
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 17/120 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
I V DSG YRC + ++V Y + ++ +L V G C+
Sbjct: 69 FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY-MRIDTRILEVPGTGEVQLTCQA 127
Query: 79 TPYDSGPY-LIAWFKDGRQIPGRTS---------STSLVINPVGREDRGIYQCIARRSDG 128
Y P ++W ++ L + P + + C+ +
Sbjct: 128 RGY---PLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP---QPSRNFSCMFWNAHM 181
Score = 41.6 bits (97), Expect = 2e-05
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 22/101 (21%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------GRTS----- 102
V + +V + S + +C+ + + Q R +
Sbjct: 4 TVTAPKEVYTVDVGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQ 61
Query: 103 ----STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
I V D G Y+C+ L +
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVICGAA---WDYKYLTV 99
Score = 26.5 bits (58), Expect = 3.6
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ + S + C N + +
Sbjct: 164 LKPQPSRNFSCMFWNAHMKELTSAIIDP 191
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 54.5 bits (131), Expect = 5e-10
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 19/125 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDG 70
+I +T +G YRC + G E + + L V+ Y P LS V
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYN----KPTLSALPSPVVTSGE 115
Query: 71 SANFQCEITPYDS-------GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 123
+ QC G + ++W D + P + PV R + +C
Sbjct: 116 NVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Query: 124 RRSDG 128
R
Sbjct: 176 SRRHI 180
Score = 33.3 bits (76), Expect = 0.017
Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 16/81 (19%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLV 107
L S +C+ T K+G P T +
Sbjct: 5 KATLWAEPGSVISRGNSVTIRCQGTL---EAQEYRLVKEGSPEPWDTQNPLEPKNKARFS 61
Query: 108 INPVGREDRGIYQCIARRSDG 128
I + G Y+C G
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAG 82
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 54.4 bits (131), Expect = 5e-10
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 19/131 (14%)
Query: 21 IEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDGSA 72
I + + +G Y C E + + L V+ Y P LS V
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYD----TPTLSVHPGPEVISGEKV 116
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDG 128
F C + D+ + K+GR + + PV RG Y+C ++
Sbjct: 117 TFYCRL---DTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNH 173
Query: 129 DVAQGSAELQL 139
+ S ++L
Sbjct: 174 AWSFPSEPVKL 184
Score = 35.6 bits (82), Expect = 0.002
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 16/81 (19%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLV 107
P + + C+ G +G R +
Sbjct: 4 KPFIWAEPHFMVPKEKQVTICCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFY 60
Query: 108 INPVGREDRGIYQCIARRSDG 128
I + G Y CI R +
Sbjct: 61 IPDMNSRMAGQYSCIYRVGEL 81
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 52.3 bits (126), Expect = 5e-10
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPG--------RTSSTSLVINPVGREDRGIYQC 121
G + C+I YD + W+ RQ+ L + + + D G Y+C
Sbjct: 17 GHVKYVCKIENYDQ-STQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRC 75
Query: 122 IARRSDGDVAQGSAELQLGGTR 143
G+ AEL + G R
Sbjct: 76 KVVNDYGE-DSSYAELFVKGVR 96
Score = 45.4 bits (108), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L ++ +T D GTYRC N GE ++ L V
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 54.8 bits (131), Expect = 5e-10
Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 27/134 (20%)
Query: 19 LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQV----STPYRVDVNPPLLSVHLDGSAN 73
L + D Y C + G A A RL V L +
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEI 138
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGR---------------------TSSTSLVINPVG 112
C + P I W+++G+++ + +++L +
Sbjct: 139 ATCNSRNGNPAP-KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK 197
Query: 113 REDRGIYQCIARRS 126
+ + C A S
Sbjct: 198 DDRDASFHCAAHYS 211
Score = 42.5 bits (99), Expect = 1e-05
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 30/111 (27%)
Query: 57 VDVN-PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------------- 92
V ++ PPL+ V S C T Y++ WF
Sbjct: 2 VRLSVPPLVEVMRGKSVILDCTPTGTH-DHYMLEWFLTDRSGARPRLASAEMQGSELQVT 60
Query: 93 ----DGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
GR P + S LV+ D Y C+ R A+ +A L
Sbjct: 61 MHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN 111
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 54.2 bits (130), Expect = 6e-10
Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 11/111 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L + + ED+G+YR S + L+ + ++ H N CE+
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR----ILRQLRNIQVTNHSQLFQNMTCEL 127
Query: 79 T-----PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
W G + + V Y CIA
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLS--SQPNLTVSWDPRISSEQDYTCIAE 176
Score = 33.0 bits (75), Expect = 0.019
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 24/88 (27%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP------------------ 98
+ + P +++ L S E I W + +
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPK 59
Query: 99 --GR---TSSTSLVINPVGREDRGIYQC 121
R T S SL ++ + ED G Y+
Sbjct: 60 QGKRLNFTQSYSLQLSNLKMEDTGSYRA 87
Score = 26.1 bits (57), Expect = 5.1
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 27 EDSGTYRCSSSNIGGEATAEVRLQV 51
Y C + N + V Q
Sbjct: 166 SSEQDYTCIAENAVSNLSFSVSAQK 190
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 51.6 bits (124), Expect = 9e-10
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 61 PPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTS------STSLVINP 110
P ++ +DG+A +C+ T P I+W K+G PGR +L I
Sbjct: 15 PANQTLAVDGTALLKCKATGDPLPV------ISWLKEGFTFPGRDPRATIQEQGTLQIKN 68
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ D G Y C+A S G SA L
Sbjct: 69 LRISDTGTYTCVATSSSG-ETSWSAVLD 95
Score = 45.8 bits (109), Expect = 1e-07
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 5 LVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
PR + L I+ + D+GTY C +++ GE + L V
Sbjct: 49 FPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 51.6 bits (124), Expect = 1e-09
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPV 111
++V+ SA F C+ P + W + G+ + R ++ I+ V
Sbjct: 24 MTVYEGESARFSCDTDGEPVP------TVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV 77
Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
D G Y + S+G + L
Sbjct: 78 QASDEGNYSVVVENSEG-KQEAEFTLT 103
Score = 45.4 bits (108), Expect = 3e-07
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
I V A D G Y N G+ AE L +
Sbjct: 72 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 51.6 bits (124), Expect = 1e-09
Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 26/109 (23%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-- 98
G + + +L+V L+V A F+CE++ W+K+G ++
Sbjct: 1 GSSGSSGQLEVLQD------IADLTVKAAEQAVFKCEVS---DEKVTGKWYKNGVEVRPS 51
Query: 99 --------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
GR LVI+ V ED G Y + S +L
Sbjct: 52 KRITISHVGRFHK--LVIDDVRPEDEGDYTFVPDGY-----ALSLSAKL 93
Score = 38.5 bits (90), Expect = 1e-04
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVR---LQVSTP 54
L I+ V ED G Y +A++ ++VS P
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGP 103
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.2 bits (123), Expect = 1e-09
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 14/82 (17%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGRED 115
+ V S +F+C ++ + W G+ + R +T LV+ D
Sbjct: 18 MEVLEGESCSFECVLSHESASD-PAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSD 76
Query: 116 RGIYQCIARRSDGDVAQGSAEL 137
G R A L
Sbjct: 77 AGEVVFSVRG-----LTSKASL 93
Score = 34.7 bits (80), Expect = 0.002
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48
IL + D+G S + +A+ VR
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 51.2 bits (123), Expect = 1e-09
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 21/96 (21%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRT 101
S P R + +A QCE++ + W K + G
Sbjct: 6 SGPARFTQDLKTKEASEGATATLQCELSK----VAPVEWKKGPETLRDGGRYSLKQDGTR 61
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
L I+ + D G Y C+ G + SA L
Sbjct: 62 CE--LQIHDLSVADAGEYSCMC----GQ-ERTSATL 90
Score = 32.0 bits (73), Expect = 0.020
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48
L I ++ D+G Y C AT VR
Sbjct: 63 ELQIHDLSVADAGEYSCMCGQERTSATLTVR 93
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 51.2 bits (123), Expect = 2e-09
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 16/83 (19%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP-GRTSST----SLVINPVGRE 114
+V QC + P I W +G+ I R++ L I E
Sbjct: 21 CAVIEGQDFVLQCSVRGTPVPR------ITWLLNGQPIQYARSTCEAGVAELHIQDALPE 74
Query: 115 DRGIYQCIARRSDGDVAQGSAEL 137
D G Y C+A + G SA +
Sbjct: 75 DHGTYTCLAENALG-QVSCSAWV 96
Score = 42.7 bits (101), Expect = 2e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I+ ED GTY C + N G+ + + V
Sbjct: 66 LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 53.5 bits (128), Expect = 2e-09
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L + G+ E++G YRC +A V+L+V + + + CE
Sbjct: 84 LRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCES 142
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVI-NPVGREDRGIYQC 121
+ + I W K ++ P + VI P + G +
Sbjct: 143 SGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNV 186
Score = 27.7 bits (61), Expect = 1.5
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 37/123 (30%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT---PYDSGPYLIAWF---------- 91
A++++++ L+ + C I P + I WF
Sbjct: 1 ADLKVEMMAG-------GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEV 53
Query: 92 -----KDGRQIPGRTSST-----------SLVINPVGREDRGIYQCIARRSDGDVAQGSA 135
Q R + SL + + E+ G Y+C + AQG+
Sbjct: 54 KVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPL-KAQGTV 112
Query: 136 ELQ 138
+L+
Sbjct: 113 QLE 115
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 50.8 bits (122), Expect = 2e-09
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
+ V A F+ E + W + G I G + L + VG
Sbjct: 18 VEVAAGSPAVFEAETE---RAGVKVRWQRGGSDISASNKYGLATEGTRHT--LTVREVGP 72
Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
D+G Y IA ++ +L
Sbjct: 73 ADQGSYAVIAGS-----SKVKFDL 91
Score = 32.7 bits (75), Expect = 0.011
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L + V D G+Y I G + + L+V
Sbjct: 65 LTVREVGPADQGSYAV----IAGSSKVKFDLKV 93
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 52.6 bits (125), Expect = 2e-09
Identities = 25/133 (18%), Positives = 40/133 (30%), Gaps = 31/133 (23%)
Query: 26 AEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP------------------------ 61
EDSG Y C + ++ +V + +
Sbjct: 54 VEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL 113
Query: 62 -PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIY 119
+ DGS C +T I W KDG I P + + + ++ RG Y
Sbjct: 114 VQVDGSRGDGSVLLTCGLTDKT-----IKWLKDGSIISPLNATKNTWNLGNNAKDPRGTY 168
Query: 120 QCIARRSDGDVAQ 132
QC + + Q
Sbjct: 169 QCQGAKETSNPLQ 181
Score = 43.3 bits (101), Expect = 5e-06
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 58 DVNPPLLSVHLDG-SANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR-ED 115
D V + G S C + ++ + W K+G+++P LV+ ED
Sbjct: 2 DAENIEYKVSISGTSVELTCPLDSDEN----LKWEKNGQELPQ-KHDKHLVLQDFSEVED 56
Query: 116 RGIYQCIARRSDG 128
G Y C S+
Sbjct: 57 SGYYVCYTPASNK 69
Score = 25.6 bits (55), Expect = 7.1
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ + GTY+C + LQV
Sbjct: 152 KNTWNLGNNAKDPRGTYQCQGAK-----ETSNPLQV 182
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 50.8 bits (122), Expect = 2e-09
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPG---------RTSSTSLVINPVG 112
+S+ +++ P P ++W+ +GR + SL+ V
Sbjct: 15 MSIDEGRFCRMDFKVSGLPA---P-DVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
D G Y C+A+ G+ A + +L
Sbjct: 71 ASDAGAYACVAKNRAGE-ATFTVQLD 95
Score = 43.5 bits (103), Expect = 1e-06
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L E V A D+G Y C + N GEAT V+L V
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 51.9 bits (124), Expect = 3e-09
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 12/106 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I +T+ D Y S NI T + L V V+ P++ +A CE+
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEM----VSKPMIYWEC-SNATLTCEV 114
Query: 79 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
+ + ++ + S ++ R ++C A
Sbjct: 115 L--EGTDVELKLYQGKEHL---RSLRQKTMSYQWTNLRAPFKCKAV 155
Score = 32.2 bits (73), Expect = 0.029
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 23/80 (28%)
Query: 68 LDGSANFQCEIT-PYDSGPYLIAWFKDGRQI--------------PGR----TSSTSLVI 108
+ G+ F P + W K ++ R T S SL I
Sbjct: 9 VYGNVTFHVPSNVPLKE----VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64
Query: 109 NPVGREDRGIYQCIARRSDG 128
+ D Y+ +
Sbjct: 65 YNLTSSDEDEYEMESPNITD 84
Score = 25.7 bits (56), Expect = 6.0
Identities = 2/37 (5%), Positives = 9/37 (24%)
Query: 16 GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ ++C + N + + +
Sbjct: 134 LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 170
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 50.7 bits (121), Expect = 4e-09
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 17/99 (17%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
G + + L V+ P + + +C I P IAW +
Sbjct: 1 GSSGSSGTLTVNGPPII-SSTQTQHALHGEKGQIKCFIRSTPP-PDRIAWSWKENVLESG 58
Query: 101 TSS--------------TSLVINPVGREDRG-IYQCIAR 124
TS ++L I+ + R D IY C A
Sbjct: 59 TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAW 97
Score = 36.0 bits (83), Expect = 0.001
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 18 ILAIEGVTAEDSGT-YRCSSSNIGGEATAEVRLQVSTP 54
L I + D T Y C++ N G T +RL+
Sbjct: 77 TLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 50.1 bits (120), Expect = 4e-09
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVG 112
L+V C+++ P P ++W DG+ + SL+I PV
Sbjct: 19 LTVQEGKLCRMDCKVSGLPT---PD-LSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74
Query: 113 REDRGIYQCIARRSDGDVAQGSAELQ 138
D GIY CIA G S EL
Sbjct: 75 SRDAGIYTCIATNRAG-QNSFSLELV 99
Score = 43.9 bits (104), Expect = 1e-06
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L IE VT+ D+G Y C ++N G+ + + L V+
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 49.8 bits (119), Expect = 5e-09
Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 52 STPYRVDVNPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFK-DGRQIPGRT--SSTSLV 107
S P V V SV F C + W + ++P R + L
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYT-LVWTRLHNGKLPSRAMDFNGILT 65
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
I V D G Y C + QG+A L
Sbjct: 66 IRNVQPSDAGTYVCTGSNMFA-MDQGTATLH 95
Score = 47.1 bits (112), Expect = 5e-08
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
R IL I V D+GTY C+ SN+ L V
Sbjct: 52 KLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 49.6 bits (119), Expect = 5e-09
Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 19/86 (22%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPV 111
+V D A F + T P W KDG+ I G+ L I+
Sbjct: 16 TTVSSDSVAKFAVKATGEPRP------TAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKT 69
Query: 112 GREDRGIYQCIARRSDGDVAQGSAEL 137
D G+Y C + S G S +L
Sbjct: 70 DTSDSGLYTCTVKNSAG-SVSSSCKL 94
Score = 43.4 bits (103), Expect = 1e-06
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ G + ++ G L I DSG Y C+ N G ++ +L +
Sbjct: 47 ITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 49.7 bits (119), Expect = 5e-09
Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 24/108 (22%)
Query: 43 ATAEVRLQVSTPYR-VDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQI--- 97
+ P V E+ + + W K+G++I
Sbjct: 4 HHHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL----ADHDAEVKWLKNGQEIQMS 59
Query: 98 --------PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
G + L I+ D YQC+ + S EL
Sbjct: 60 GSKYIFESIGAKRT--LTISQCSLADDAAYQCVVGG-----EKCSTEL 100
Score = 33.5 bits (77), Expect = 0.007
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 4/33 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I + D Y+C G L V
Sbjct: 74 LTISQCSLADDAAYQCVV----GGEKCSTELFV 102
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.8 bits (119), Expect = 6e-09
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS------STSLV 107
+ P +V +DG+ C T P I W KDG + + S + L
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSP----VPTILWRKDGVLVSTQDSRIKQLENGVLQ 65
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
I D G Y CIA G A SA ++
Sbjct: 66 IRYAKLGDTGRYTCIASTPSG-EATWSAYIE 95
Score = 47.5 bits (113), Expect = 6e-08
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 4 LLVLPGPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
L+ R + L +L I D+G Y C +S GEAT ++V V PP
Sbjct: 48 LVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP-VQPP 106
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 49.4 bits (118), Expect = 7e-09
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 20/93 (21%)
Query: 59 VNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG---------RTSSTS 105
+ L +V + F+C P + W K+G++ R S
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPT------MRWLKNGKEFKQEHRIGGYKVRNQHWS 66
Query: 106 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L++ V D+G Y C+ G + L
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 98
Score = 41.3 bits (97), Expect = 8e-06
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L +E V D G Y C N G L V
Sbjct: 67 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 49.7 bits (119), Expect = 7e-09
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPG--------RTSSTSLVINPV 111
+ V A +C + P ++ W K G+Q+ + L++
Sbjct: 23 VRVVSGAEAELKCVVLGEPPP------VVVWEKGGQQLAASERLSFPADGAEHGLLLTAA 76
Query: 112 GREDRGIYQCIARRSDGDVAQGSAELQ 138
D G+Y C AR + G A +A +
Sbjct: 77 LPTDAGVYVCRARNAAG-EAYAAAAVT 102
Score = 45.5 bits (108), Expect = 2e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + D+G Y C + N GEA A + V P
Sbjct: 71 LLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 49.7 bits (119), Expect = 7e-09
Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 21/112 (18%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQ 96
G + P V S +C+I+ P + W ++
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPK------LFWKRNNEM 55
Query: 97 IP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ T +L+I V ++D G Y A G V + L
Sbjct: 56 VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAG-VTTCNTRLD 106
Score = 46.2 bits (110), Expect = 2e-07
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I+ V +D+G Y S+ N G T RL V+
Sbjct: 75 LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 48.9 bits (117), Expect = 1e-08
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 19/98 (19%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRT 101
S+ ++ +V+L +CEI S W K+G + GR
Sbjct: 5 SSGLKILTPLTDQTVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRI 60
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
LVI ED G Y D A++ +
Sbjct: 61 HK--LVIANALTEDEGDYVFAP---DAYNVTLPAKVHV 93
Score = 38.1 bits (89), Expect = 1e-04
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I ED G Y + T ++ V +
Sbjct: 62 KLVIANALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 50.8 bits (121), Expect = 1e-08
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L + G+ ED G+Y C G + ++ L+V + + + + +C
Sbjct: 80 LRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCV 139
Query: 78 ITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRG-IYQCIAR 124
T I W D +P G + TSL I + G C
Sbjct: 140 STGGRPPA-QITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVE 196
Score = 38.1 bits (88), Expect = 4e-04
Identities = 14/107 (13%), Positives = 24/107 (22%), Gaps = 29/107 (27%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGP---YLIAWFKDGRQIP-----------------GR 100
P + L S C + + + W + G
Sbjct: 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLE 65
Query: 101 TSST---------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ SL + + ED G Y C+ L+
Sbjct: 66 FVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLR 112
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.5 bits (116), Expect = 2e-08
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPG--------RTS 102
S + P V G F E+ + P L + W+K+G++I +
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL----ADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 103 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
L IN D Y A GD + S EL
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GD-EKCSTEL 91
Score = 32.4 bits (74), Expect = 0.017
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
IL I D Y ++ G+ L V +
Sbjct: 64 ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRSG 96
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 49.8 bits (119), Expect = 3e-08
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 24/126 (19%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG--EATAEVRLQVSTPYRVDVNPPLLS------VHLDG 70
+I +T + +G YRC + G + + + L ++ Y + P LS V
Sbjct: 60 FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAY----SKPTLSALPSPLVTSGK 115
Query: 71 SANFQCEITPYDSGPYLIAWFKDGR---------QIPGRTSSTSLVINPVGREDRGIYQC 121
S C+ S K+ + + ++PV G Y+C
Sbjct: 116 SVTLLCQS---RSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Query: 122 IARRSD 127
+
Sbjct: 173 FSSHGF 178
Score = 31.3 bits (71), Expect = 0.064
Identities = 13/81 (16%), Positives = 19/81 (23%), Gaps = 16/81 (19%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLV 107
P L S C+ T K+ P +
Sbjct: 5 KPTLWAEPGSVISWGNSVTIWCQGTL---EAREYRLDKEESPAPWDRQNPLEPKNKARFS 61
Query: 108 INPVGREDRGIYQCIARRSDG 128
I + + G Y+C R G
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVG 82
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 47.7 bits (114), Expect = 3e-08
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
+ V + +A+F+ E++ W G+ + G+ L+++
Sbjct: 15 VEVFVGETAHFEIELS---EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI--LILHNCQL 69
Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
G A + +A L
Sbjct: 70 GMTGEVSFQAAN-----TKSAANL 88
Score = 35.0 bits (81), Expect = 0.002
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 6 VLPGPRTRVL--GP--ILAIEGVTAEDSGTYRCSSSNIGGEATAEVR 48
+ P ++ G IL + +G ++N A +V+
Sbjct: 45 LAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTKSAANLKVK 91
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 47.7 bits (114), Expect = 4e-08
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 20/84 (23%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
L V G+A +C ++ S + W + G LV+ +
Sbjct: 18 LEVLEGGAATLRCVLS---SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE--LVVRNLRP 72
Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
+D G Y C GD SA L
Sbjct: 73 QDSGRYSCSF----GD-QTTSATL 91
Score = 32.7 bits (75), Expect = 0.010
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + + +DSG Y CS G+ T L V+
Sbjct: 64 ELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTAL 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 50.1 bits (120), Expect = 4e-08
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 9 GPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
R V L + +D+GTY C ++N GG + L V +
Sbjct: 432 NGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 36.6 bits (85), Expect = 0.001
Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP-----GRTS- 102
D + V + F C D P I W + + GR +
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRADG-DPPPA-ILWLSPRKHLVSAKSNGRLTV 437
Query: 103 --STSLVINPVGREDRGIYQCIAR 124
+L + +D G Y CIA
Sbjct: 438 FPDGTLEVRYAQVQDNGTYLCIAA 461
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 47.3 bits (113), Expect = 5e-08
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------- 103
S+ V + + +CE++ + WFK+G +I S
Sbjct: 5 SSGIMVTKQLEDTTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 104 --TSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
L+I + D Y + Q SA+L
Sbjct: 62 KKHILIIEGATKADAAEYSVMT----TG-GQSSAKL 92
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
IL IEG T D+ Y ++ A V L+
Sbjct: 65 ILIIEGATKADAAEYSVMTTGGQSSAKLSVDLKSGPS 101
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 46.9 bits (112), Expect = 5e-08
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 17/86 (19%)
Query: 64 LSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPV 111
+S+ C T P P + W GR+I + T+L+I V
Sbjct: 15 ISIDEGKVLTVACAFTGEPT---P-EVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV 70
Query: 112 GREDRGIYQCIARRSDGDVAQGSAEL 137
++D G+Y G + +
Sbjct: 71 QKQDGGLYTLSLGNEFGS-DSATVNI 95
Score = 45.8 bits (109), Expect = 2e-07
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I V +D G Y S N G +A V + +
Sbjct: 65 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 48.7 bits (116), Expect = 6e-08
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 20/123 (16%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEATAE---VRLQVSTPYRVDVNPPLLS------VHLDGS 71
I +T E +G YRC + + + L V+ Y P LS V+ G+
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAY----IKPTLSAQPSPVVNSGGN 117
Query: 72 ANFQCEITPYDSGPYLI-------AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 124
QC+ G L + + +S + PV R Y+C A
Sbjct: 118 VTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAY 177
Query: 125 RSD 127
S+
Sbjct: 178 DSN 180
Score = 34.4 bits (79), Expect = 0.007
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 16/91 (17%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLV 107
P L +C+ +++ + P
Sbjct: 5 KPTLWAEPGSVITQGSPVTLRCQGGQ---ETQEYRLYREKKTAPWITRIPQELVKKGQFP 61
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
I + E G Y+C ++ S L+
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLE 92
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 47.0 bits (112), Expect = 6e-08
Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 29/114 (25%)
Query: 41 GEATAEVRLQV--STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQI 97
G + + ++ P +V SA CE+ + + W+KDG+++
Sbjct: 1 GSSGSSGKVVFAKEQPAHREV-----QAEAGASATLSCEV----AQAQTEVTWYKDGKKL 51
Query: 98 P----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 141
G T LV+ G+ + G Y C A Q S LQ+ G
Sbjct: 52 SSSSKVRVEAVGCTRR--LVVQQAGQAEAGEYSCEAGG-----QQLSFRLQVAG 98
Score = 30.8 bits (70), Expect = 0.061
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L ++ ++G Y C + G RLQV
Sbjct: 68 LVVQQAGQAEAGEYSCEA----GGQQLSFRLQV 96
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 46.9 bits (112), Expect = 6e-08
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGR 113
V +CE++ + W KD + I G + LVI
Sbjct: 18 QWVAPGEDVELRCELS---RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAM--LVIRGASL 72
Query: 114 EDRGIYQCIARRSDGDVAQGSAEL 137
+D G Y C S + +A L
Sbjct: 73 KDAGEYTCEVEAS-----KSTASL 91
Score = 41.9 bits (99), Expect = 5e-06
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+L I G + +D+G Y C A+ V + S P
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTASLHVEEKASGP 100
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 49.0 bits (117), Expect = 8e-08
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 9 GPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST 53
PR VL L V D+G Y C +N+ G + A L VST
Sbjct: 398 HPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 39.3 bits (92), Expect = 2e-04
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 13/81 (16%)
Query: 53 TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST-------- 104
+ + P L++ A +C P S + W + S
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLND 406
Query: 105 -SLVINPVGREDRGIYQCIAR 124
+L + V D G+Y C+
Sbjct: 407 GTLNFSHVLLSDTGVYTCMVT 427
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 46.5 bits (111), Expect = 9e-08
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 20/87 (22%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQI---PGRTSST------SLVINP 110
SV + P +++W ++ + + R + L I
Sbjct: 15 QSVREGQDVIMSIRVQGEPKP------VVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILA 68
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAEL 137
R D G Y C A G Q A L
Sbjct: 69 AERGDAGFYTCKAVNEYG-ARQCEARL 94
Score = 44.6 bits (106), Expect = 5e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I D+G Y C + N G E RL+V
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 48.1 bits (114), Expect = 9e-08
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG-----EATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
+ I + D GTY C E AEV L V + + +
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT-PSISDFEIPTSNIRR 125
Query: 74 FQCEITPYDSGPY---LIAWFKDGRQIPGRTSSTS 105
C SG + ++W ++G ++ ++ S
Sbjct: 126 IICST----SGGFPEPHLSWLENGEELNAINTTVS 156
Score = 39.6 bits (92), Expect = 1e-04
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 21/96 (21%)
Query: 65 SVHLDGSANFQC--EITPYDSGPYLIAWFKDGRQI--------------PGRTSST---- 104
+ + A C ++ + I W K+ + + RT
Sbjct: 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 105 -SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
S+VI + D G Y+C+ + + D + ++
Sbjct: 65 LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 46.6 bits (111), Expect = 1e-07
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 22/97 (22%)
Query: 52 STPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY-LIAWFKDGRQIP----------GR 100
S L V G+A F C+ P + W K ++ G
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKT----EHPAATVTWRKGLLELRASGKHQPSQEGL 61
Query: 101 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
T L I+ + + D Y C G AQ A+L
Sbjct: 62 TLR--LTISALEKADSDTYTCDI----GQ-AQSRAQL 91
Score = 32.3 bits (74), Expect = 0.017
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I + DS TY C A V+ + S P
Sbjct: 65 LTISALEKADSDTYTCDIGQAQSRAQLLVQGRRSGP 100
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 48.7 bits (116), Expect = 1e-07
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLV 107
R V P V SANF C + P + W KD R++ L
Sbjct: 484 RFIVKPYGTEVGEGQSANFYCRVIASSP-PV-VTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 108 INPVGREDRGIYQCIARRSDGDVAQGSAEL 137
IN V +D+G Y A+ S G + L
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGT-KEEIVFL 570
Score = 40.6 bits (95), Expect = 8e-05
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
L I V +D G Y + N G V L V+
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVT 573
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 46.2 bits (110), Expect = 1e-07
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 20/86 (23%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPV 111
V + E++ + W K+G ++ S L+ + V
Sbjct: 18 QQVFVGDRVEMAVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74
Query: 112 GREDRGIYQCIARRSDGDVAQGSAEL 137
+EDRG YQ I Q AEL
Sbjct: 75 VQEDRGRYQVITNGG-----QCEAEL 95
Score = 33.5 bits (77), Expect = 0.005
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ 50
IL V ED G Y+ ++ G+ AE+ ++
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG--GQCEAELIVE 98
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 47.1 bits (111), Expect = 1e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
I +EG ED G Y + N GE + ++V
Sbjct: 104 IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Score = 34.3 bits (78), Expect = 0.005
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 103 STSLVINPVGREDRGIYQCIAR 124
+ + +ED G+Y +
Sbjct: 102 RSIFTVEGAEKEDEGVYTVTVK 123
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 47.8 bits (113), Expect = 1e-07
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 12/110 (10%)
Query: 27 EDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLSVHLDGSANFQCEIT-PYDSG 84
E C A ++ P RV++ P + + C +
Sbjct: 61 EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRA 120
Query: 85 PYLIAWFKDGRQIPGRT---------SSTSLVINPVGREDRG-IYQCIAR 124
+ + +++ R+ + RED G + C A
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAE 170
Score = 33.9 bits (77), Expect = 0.011
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 1/70 (1%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR 113
P+ D+ P + V GS C + + + + R
Sbjct: 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDI-R 60
Query: 114 EDRGIYQCIA 123
E C
Sbjct: 61 EPETQPVCFF 70
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 48.3 bits (115), Expect = 2e-07
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCE 77
L + V ED G Y C + T V L+V + + + L+ D ++ Q E
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY-NFTLHGHHDTLNAAADPWSHPQFE 360
Score = 39.4 bits (92), Expect = 2e-04
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-------TSLVINPVG 112
HL + +C+ G + Q+ + S+ L V
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQ--QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 113 REDRGIYQCIAR 124
ED G+Y C A
Sbjct: 310 VEDGGVYTCYAM 321
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 45.9 bits (109), Expect = 2e-07
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD 58
L ++ T ++G Y + N G+ ++ +D
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
Score = 41.3 bits (97), Expect = 8e-06
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 13/50 (26%)
Query: 88 IAWFKDGRQIP-------------GRTSSTSLVINPVGREDRGIYQCIAR 124
+ WF +G + L ++ + G Y IA+
Sbjct: 33 LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 9 GPRTRVLGP-ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
R VL L VT +D+G Y C SN G TA L V+
Sbjct: 388 KVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 37.0 bits (86), Expect = 0.001
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 12/81 (14%)
Query: 53 TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST-------- 104
+ P L+V +A +C + S ++W + +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAS--TSLT-SVSWITPNGTVMTHGAYKVRIAVLSD 396
Query: 105 -SLVINPVGREDRGIYQCIAR 124
+L V +D G+Y C+
Sbjct: 397 GTLNFTNVTVQDTGMYTCMVS 417
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 45.4 bits (108), Expect = 2e-07
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ DSG Y+ N GE A + V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 44.6 bits (106), Expect = 3e-07
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 15/78 (19%)
Query: 71 SANFQCEIT--PYDSGPYLIAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQ 120
+ N + + P + W +TS+ R D G Y+
Sbjct: 19 THNLEVDFIGAPDPT----ATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74
Query: 121 CIARRSDGDVAQGSAELQ 138
+ G+ + E+
Sbjct: 75 LKVKNELGE-DEAIFEVI 91
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 47.1 bits (111), Expect = 2e-07
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 9/129 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGE----ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L+I ED+G+Y ++ L+V+ L +
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRL 143
Query: 75 QCEIT-PYDSGPYL-IAWFKDGRQIPGRTSSTS--LVINPVGREDRGIYQCIARRSDGDV 130
C + ++GP L +W + ++ S L + P + C +R V
Sbjct: 144 SCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQV 203
Query: 131 AQGSAELQL 139
+QL
Sbjct: 204 -TTERTVQL 211
Score = 33.7 bits (76), Expect = 0.014
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 43 ATAEVRLQVSTPYRVDVNPPLLSV--HLDGSANFQCEITPYDSGPYLIAWFKDGR-QIPG 99
V S P+R + P L V DG + E+ ++ + GR ++ G
Sbjct: 16 LCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLG 75
Query: 100 --RTSSTSLVINPVGREDRGIYQCIARRSDGD 129
+ + SL I ED G Y R
Sbjct: 76 DVQKKNCSLSIGDARMEDTGSYFFRVERGRDV 107
Score = 29.8 bits (66), Expect = 0.24
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAE--VRLQVS 52
L + + C G + T E V+L VS
Sbjct: 178 ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 45.5 bits (108), Expect = 3e-07
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ + DSG Y S + TA +R++V
Sbjct: 80 VFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 41.2 bits (97), Expect = 1e-05
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 88 IAWFKDGRQIPG-----RTS--STSLVINPVGREDRGIYQCIAR 124
+ W K G + RTS T + R D G Y+ +
Sbjct: 56 VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 45.6 bits (108), Expect = 3e-07
Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 26/124 (20%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP-- 98
+R Q P R+ +P L V A C+ P I W+K G ++
Sbjct: 1 GSLR-QEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP------TIEWYKGGERVETD 53
Query: 99 -------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNI 145
G +V R D G+Y C+AR G+ A L++ +
Sbjct: 54 KDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
Query: 146 KHYN 149
H++
Sbjct: 114 HHHH 117
Score = 33.6 bits (77), Expect = 0.006
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-TAEVRLQVSTP 54
+ + D G Y C + N GEA + + L+V+
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 45.0 bits (106), Expect = 4e-07
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I +G+YRC S + L V
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106
Score = 40.4 bits (94), Expect = 2e-05
Identities = 16/97 (16%), Positives = 23/97 (23%), Gaps = 21/97 (21%)
Query: 61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGR-----------------QIPGRT 101
P V + GS F + P ++ WFK +
Sbjct: 11 PQDGEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
L I G Y+C D + L
Sbjct: 70 YLFELHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLT 105
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 44.7 bits (106), Expect = 4e-07
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 20/77 (25%)
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQ 120
CE++ + W+KDG+++ GR L++ +D G ++
Sbjct: 27 RVVLTCELS---RVDFPATWYKDGQKVEESELLVVKMDGRKHR--LILPEAKVQDSGEFE 81
Query: 121 CIARRSDGDVAQGSAEL 137
C +
Sbjct: 82 CRTEG-----VSAFFGV 93
Score = 32.4 bits (74), Expect = 0.015
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + +DSG + C + +A + V P
Sbjct: 67 LILPEAKVQDSGEFECRT----EGVSAFFGVTVQDP 98
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 45.0 bits (107), Expect = 4e-07
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 13/84 (15%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIP--GRTS------STSLVINPVGRE 114
V S ++T + W K +QI + L I +E
Sbjct: 17 QKVRAGESVELFGKVTGT---QPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQE 73
Query: 115 DRGIYQCIARRSDGDVAQGSAELQ 138
G Y + G Q L
Sbjct: 74 HCGCYTLLVENKLGS-RQAQVNLT 96
Score = 43.5 bits (103), Expect = 2e-06
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 6 VLPGPRTRVL----GPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ +V G L I E G Y N G A+V L V
Sbjct: 48 IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 46.8 bits (110), Expect = 5e-07
Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 13/127 (10%)
Query: 5 LVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPL 63
L+LPG +V ++ C S+ G++TA+ L V TP RV++ P
Sbjct: 42 LLLPGNNRKVYEL------SNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP 95
Query: 64 LSVHLDGSANFQCEIT-PYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRG 117
+ + +C++ + + +++ + + +
Sbjct: 96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGA 155
Query: 118 IYQCIAR 124
+ C
Sbjct: 156 NFSCRTE 162
Score = 29.1 bits (64), Expect = 0.48
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 7/49 (14%)
Query: 20 AIEGVTAEDSGTY--RCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSV 66
A VTAED GT C+ + + + P + +
Sbjct: 247 ASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP-----APNVIL 290
Score = 28.7 bits (63), Expect = 0.69
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
V+P + + GS C + I +++ ++ V ++
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNR-KVYELSNVQED 60
Query: 117 GIYQCIARRSDGDVAQGSAEL 137
C + + L
Sbjct: 61 SQPMCYS-NCPDGQSTAKTFL 80
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 45.7 bits (108), Expect = 6e-07
Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 29/127 (22%)
Query: 21 IEGVTAEDSGTYRCS-----SSNIGGEATAEVRLQVSTPYRVDVNPPLLS------VHLD 69
I +T + +GTYRC S + + + + Y P LS V
Sbjct: 67 ISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYE----KPSLSAQPGPTVLAG 122
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQ 120
+ C S + ++G T + P G Y+
Sbjct: 123 ENVTLSCSS---RSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPA--THGGTYR 177
Query: 121 CIARRSD 127
C D
Sbjct: 178 CFGSFHD 184
Score = 32.6 bits (74), Expect = 0.030
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 18/83 (21%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTS 105
P L H + + QC D ++G S +
Sbjct: 8 KPSLLAHPGPLVKSEETVILQCW---SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKAN 64
Query: 106 LVINPVGREDRGIYQCIARRSDG 128
I+ + ++ G Y+C +
Sbjct: 65 FSISRMTQDLAGTYRCYGSVTHS 87
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 44.0 bits (104), Expect = 1e-06
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPP 62
L T ++G Y + N G A + P+ VD P
Sbjct: 67 LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111
Score = 43.3 bits (102), Expect = 2e-06
Identities = 21/108 (19%), Positives = 31/108 (28%), Gaps = 26/108 (24%)
Query: 47 VRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIP---- 98
V L V P RV L L + + P + W +G+ +
Sbjct: 1 VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPP------TLHWLHNGQPLRESKI 51
Query: 99 --------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
G S L+ N + G Y IA+ G A +
Sbjct: 52 IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG-TANQTINGH 98
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 45.7 bits (108), Expect = 1e-06
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 19 LAIEGVTAEDSGTYRC-----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL-DGSA 72
++I +T D+GTY C S + ++ A L V V + +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
+F CE + + WFK+G ++ ++
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVD 168
Score = 38.0 bits (88), Expect = 4e-04
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT---AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
+ + C +++ + L + + V + N
Sbjct: 182 AKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVT 241
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C++ + + W ++G T+ST
Sbjct: 242 CQVRKFYPQRLQLTWLENGNVSRTETASTV 271
Score = 29.1 bits (65), Expect = 0.45
Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 29/95 (30%)
Query: 49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------- 98
LQV P +SV SA C +T I WF+
Sbjct: 4 LQVIQP------DKSVSVAAGESAILHCTVTSLIPVGP-IQWFRGAGPARELIYNQKEGH 56
Query: 99 ----------GRTSST--SLVINPVGREDRGIYQC 121
+ + S+ I+ + D G Y C
Sbjct: 57 FPRVTTVSESTKRENMDFSISISNITPADAGTYYC 91
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 45.3 bits (106), Expect = 1e-06
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 7 LPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPLLS 65
L ++ +L + + +GT C S G V+L V + P ++ V+P L
Sbjct: 49 LGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL- 107
Query: 66 VHLDGSANFQCEIT---PYDSGPYLIAWFKDGRQIPGRTS 102
+ G C P D + G+++ G +
Sbjct: 108 --VPGDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQA 145
Score = 39.1 bits (90), Expect = 2e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST---SLVINP 110
P +V+ P+++V L S C + D G + W + S T L +
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGAS-VQWRGLDTSLGAVQSDTGRSVLTVRN 65
Query: 111 VGREDRGIYQCIA 123
G C+
Sbjct: 66 ASLSAAGTRVCVG 78
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 43.4 bits (103), Expect = 1e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
L I VT EDS + + NI GE ++ L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 42.6 bits (101), Expect = 2e-06
Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 71 SANFQCEITPYDSGPY-LIAWFKDGRQI---PGRTSST------SLVINPVGREDRGIYQ 120
A+F+ + P W+K+G +I LVI V ED
Sbjct: 22 DAHFRVRVVGK---PDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIM 78
Query: 121 CIARRSDGDVAQGSAEL 137
A G+ A L
Sbjct: 79 VKAINIAGE-TSSHAFL 94
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 43.9 bits (104), Expect = 1e-06
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L T +D G Y ++N G + RL V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAV 103
Score = 43.1 bits (102), Expect = 2e-06
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 21/88 (23%)
Query: 64 LSVHLDGSANFQCEIT----PYDSGPYLIAWFKDGRQIPGRTS----------STSLVIN 109
+ F C + P I WFKDG+QI ++ + SL
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPK------IYWFKDGKQISPKSDHYTIQRDLDGTCSLHTT 71
Query: 110 PVGREDRGIYQCIARRSDGDVAQGSAEL 137
+D G Y +A G + L
Sbjct: 72 ASTLDDDGNYTIMAANPQG-RISCTGRL 98
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 43.9 bits (103), Expect = 1e-06
Identities = 18/98 (18%), Positives = 24/98 (24%), Gaps = 16/98 (16%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST----------- 104
++ V P S +F C P AW D +
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGEL 71
Query: 105 -----SLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
L + V G YQC+ G A L
Sbjct: 72 MEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 34.7 bits (79), Expect = 0.003
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGGEATAE-VRLQV 51
IL + V G Y+C SN G + + L +
Sbjct: 77 ILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 43.4 bits (103), Expect = 1e-06
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I +DSGTYR +N GEA+ L V+
Sbjct: 66 LEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 42.7 bits (101), Expect = 2e-06
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 19/79 (24%)
Query: 71 SANFQCEIT----PYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGREDRGI 118
+ F + + W+ +G ++ + T +L I +D G
Sbjct: 25 NTRFILNVQSKPTA------EVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGT 78
Query: 119 YQCIARRSDGDVAQGSAEL 137
Y+ + G A A L
Sbjct: 79 YRAVCTNYKG-EASDYATL 96
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 43.8 bits (103), Expect = 1e-06
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
+ I +G YRC + + L+V
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHES 112
Score = 40.4 bits (94), Expect = 3e-05
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 21/97 (21%)
Query: 61 PPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQ-----------------IPGRT 101
P +V + F ++ P I WFK R
Sbjct: 14 PQGGTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ + I G Y+C D S +L+
Sbjct: 73 YTFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLE 108
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 43.0 bits (101), Expect = 3e-06
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------------GR 100
++ + S GS QC ++ + + W + + + R
Sbjct: 6 TIETTGNI-SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDR 64
Query: 101 TSST---SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKH 147
+ L + + D G Y CI G L++ + +H
Sbjct: 65 VAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEH 114
Score = 36.8 bits (85), Expect = 6e-04
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 19 LAIEGVTAEDSGTYRCS-SSNIGGEATAEVRLQVSTP 54
L ++ +T D+G Y C + G T + L+V
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLES 109
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 42.8 bits (100), Expect = 4e-06
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 2 EPLLVLPGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
L G + L I+GVT D G Y C++S+ ++V V
Sbjct: 59 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 118
Query: 62 PLLS 65
+ S
Sbjct: 119 GMES 122
Score = 38.6 bits (89), Expect = 1e-04
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 17/91 (18%)
Query: 55 YRVDVNPP-LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIP--------------- 98
Y V ++P + + + C + W +
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 99 -GRTSSTSLVINPVGREDRGIYQCIARRSDG 128
+ ++L I+ V R D+G+Y C A
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 98
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 42.4 bits (100), Expect = 4e-06
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 26/112 (23%)
Query: 35 SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKD 93
SS + G + ++ + V +V V + CE+ P+ + W KD
Sbjct: 2 SSGSSGTDVSSWI---VYPSGKVYV-----AAVRLERVVLTCEL----CRPWAEVRWTKD 49
Query: 94 GRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 137
G ++ + LV+ V ED G Y C D S +
Sbjct: 50 GEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DD-ESASFTV 96
Score = 31.7 bits (72), Expect = 0.030
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L + V EDSG Y C + +A + V+ P
Sbjct: 70 LVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 43.5 bits (102), Expect = 6e-06
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 35/114 (30%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITP-YDSGPYLIAWFKDGRQIP----- 98
A+++ V P + + A+ C + P + + W +
Sbjct: 1 ADLQFSVLGP------SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYA 54
Query: 99 --------------GRTSST---------SLVINPVGREDRGIYQCIARRSDGD 129
GRTS +L I+ V D G Y C + D
Sbjct: 55 DGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108
Score = 39.3 bits (91), Expect = 2e-04
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 19/119 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
L I VTA DSG Y C + G+ + +++ + + DG + +C
Sbjct: 85 LRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRS 142
Query: 79 TPYDSGPYLIAWFKD-GRQIPGRTS------------STSLVINPVGREDRGIYQCIAR 124
T + P I W + G IP + + S+++ C R
Sbjct: 143 TGWYPQPQ-IQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG---SSGEGVSCTIR 197
Score = 27.7 bits (61), Expect = 1.5
Identities = 2/32 (6%), Positives = 9/32 (28%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTPY 55
+ C+ + + ++ P+
Sbjct: 184 MRGSSGEGVSCTIRSSLLGLEKTASISIADPF 215
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 42.2 bits (99), Expect = 6e-06
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
L I+ V D G Y C + + A V L+V P+ +NP H
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW-INPGRSRSHHHH 137
Score = 36.1 bits (83), Expect = 0.001
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 32/120 (26%)
Query: 49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEITP-YDSGPYLIAWFKDGRQIP--------- 98
++ S +RV + + A C I+P ++ + W++
Sbjct: 1 MRGSGQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKD 60
Query: 99 ----------GRTSST---------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
GRT +L I V D G Y C R A ++L
Sbjct: 61 QDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQ---EEAAVEL 117
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 41.9 bits (98), Expect = 7e-06
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 8 PGPRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV-STPYRVDVNPPL 63
P V L + T ++G Y ++N G+A+A + P+ + P+
Sbjct: 54 PAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPI 110
Score = 38.8 bits (90), Expect = 1e-04
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 15/52 (28%)
Query: 88 IAWFKDGRQIP---------------GRTSSTSLVINPVGREDRGIYQCIAR 124
+ W +G + L +N + G Y +A
Sbjct: 32 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 83
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 41.5 bits (97), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
++I+ + ED+GTY C +SN +V
Sbjct: 92 ISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
Score = 38.1 bits (88), Expect = 2e-04
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 36/120 (30%)
Query: 30 GTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT----PYDSGP 85
G+ + ++ + + S P + GS CE P
Sbjct: 2 GSSHHHHHH-----SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVP----- 51
Query: 86 YLIAWFKDGRQIP---------------------GRTSSTSLVINPVGREDRGIYQCIAR 124
I W+ +G+ + +++++ I+ + ED G Y+C A
Sbjct: 52 -EIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 42.3 bits (99), Expect = 2e-05
Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 21/123 (17%)
Query: 21 IEGVTAEDSGTYRCS-----SSNIGGEATAEVRLQVSTPYRVDV--NPPLLSVHLDGSAN 73
I + + +GTYRC S + + + ++ Y P +V S
Sbjct: 66 IGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVT 125
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIAR 124
C S + ++G T + P G Y+C
Sbjct: 126 LSCSS---RSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPA--THGGTYRCFGS 180
Query: 125 RSD 127
D
Sbjct: 181 FRD 183
Score = 33.8 bits (77), Expect = 0.012
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 18/83 (21%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTS 105
P L H + + QC ++G+ S +
Sbjct: 7 KPSLLAHPGPLVKSEETVILQCWSDV---RFQHFLLHREGKFKDTLHLIGEHHDGVSKAN 63
Query: 106 LVINPVGREDRGIYQCIARRSDG 128
I P+ ++ G Y+C +
Sbjct: 64 FSIGPMMQDLAGTYRCYGSVTHS 86
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 41.8 bits (97), Expect = 3e-05
Identities = 14/97 (14%), Positives = 22/97 (22%), Gaps = 10/97 (10%)
Query: 49 LQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-----TSS 103
L +V +L+ S C + W
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 140
L++ V D G Y C G+ L +
Sbjct: 60 RRLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVD 92
Score = 32.1 bits (72), Expect = 0.047
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
R +G L + V DSG Y C G V L V P P L
Sbjct: 54 RWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVHLLVDVP---PEEPQLSCFRKSP 107
Query: 71 SANFQCEITPYDSG 84
+N CE P +
Sbjct: 108 LSNVVCEWGPRSTP 121
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 41.5 bits (96), Expect = 3e-05
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 4/110 (3%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP--LLSVHLDGSANFQC 76
+ V GTY + + + L V P +V + P + + C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315
Query: 77 EITP-YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR-GIYQCIAR 124
++ Y SG + W G + R G
Sbjct: 316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGH 365
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 39.5 bits (92), Expect = 6e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQV 51
+ + + D GTY+C G A ++ L V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 31.4 bits (71), Expect = 0.041
Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 37/124 (29%)
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQC--EITPYDSGPYLIAWFK--------------- 92
+ + ++ +A C ++P D GP I W
Sbjct: 1 DFARSLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILY 60
Query: 93 -----DGRQIP---GRTSST---------SLVINPVGREDRGIYQCIARRSDGDVAQGSA 135
P GR T S+ + + D G YQC +++ G +
Sbjct: 61 SGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGV---ANK 117
Query: 136 ELQL 139
++ L
Sbjct: 118 KIHL 121
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 40.4 bits (94), Expect = 7e-05
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR----VDVNPPLLSVHLDGSANF 74
L + + TY+C ++ ++ R V
Sbjct: 180 LPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTL 239
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I + + W + Q+P ST+
Sbjct: 240 ACLIQNFMPEDISVQWLHNEVQLPDARHSTT 270
Score = 27.7 bits (61), Expect = 1.6
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
H + C ++ Y G I W +DG+ + S+ S
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAS 60
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 38.3 bits (89), Expect = 1e-04
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 19/89 (21%)
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI----------PG 99
+V ++V G+A C + + + W +Q
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDN 59
Query: 100 RTSST-------SLVINPVGREDRGIYQC 121
R S+ ++ V D G Y C
Sbjct: 60 RIELVRASWHELSISVSDVSLSDEGQYTC 88
Score = 31.4 bits (71), Expect = 0.043
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 6 VLPGPRTRVLGP-----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L R ++ +++ V+ D G Y CS T++ L V
Sbjct: 55 ALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTVLGV 107
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 39.4 bits (92), Expect = 1e-04
Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 21/123 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C + G E++ + P V + PP G A+
Sbjct: 115 LKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 173
Query: 74 FQCEITPYDSGPYLIAWFKDGR--------QIPGRTS-------STSLVINPVGREDRGI 118
C + + + W DG + S S++L + E
Sbjct: 174 VVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 233
Query: 119 YQC 121
Y C
Sbjct: 234 YTC 236
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 37.7 bits (88), Expect = 2e-04
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 26/111 (23%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------------- 102
RVD P ++ S C + W+ R+ G +
Sbjct: 2 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWY---RKKSGEGNEESISKGGRYVET 58
Query: 103 ------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL----GGTR 143
S SL IN + ED G Y+C + G + GT
Sbjct: 59 VNSGSKSFSLRINDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGDGTA 109
Score = 29.6 bits (67), Expect = 0.19
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAE 46
L I +T ED GTYRC GG
Sbjct: 68 LRINDLTVEDGGTYRCGLGVAGGYCDYA 95
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 38.3 bits (89), Expect = 3e-04
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 15/116 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV------RLQVSTPYRVDVNPPLLSV------ 66
L ++ T C+SS T ++ +L V + +V PP ++V
Sbjct: 76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK-NVFPPEVAVFEPSEA 134
Query: 67 --HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ S+ + + Y
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYA 190
Score = 30.6 bits (69), Expect = 0.15
Identities = 6/52 (11%), Positives = 11/52 (21%)
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129
T G + + R + T L + C +
Sbjct: 48 FTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHWT 99
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 37.7 bits (87), Expect = 3e-04
Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 19/77 (24%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI----------PGRTSST-------SL 106
++V + +C + + W + S+
Sbjct: 11 ITVEEGQTLTLKCVTS--LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSI 68
Query: 107 VINPVGREDRGIYQCIA 123
+ V +D G+Y+C+
Sbjct: 69 TVPNVTLQDEGVYKCLH 85
Score = 33.0 bits (75), Expect = 0.014
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDV 59
+ + VT +D G Y+C + +T EV++ V + +
Sbjct: 68 ITVPNVTLQDEGVYKCLHYS-DSVSTKEVKVIVLATMKGEF 107
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 38.3 bits (89), Expect = 3e-04
Identities = 22/155 (14%), Positives = 39/155 (25%), Gaps = 46/155 (29%)
Query: 19 LAIEGVTAEDSGTYRC---SSSNIGGEATAEVRLQVSTPYRVDVN--------------- 60
+ + + DSG Y C + + L V+ +
Sbjct: 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVT 140
Query: 61 --PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------DGRQIPGR-- 100
+S+ + + C Y+ W+K + GR
Sbjct: 141 QAQSSVSMPVRKAVTLNCLYETSWWSYYI-FWYKRLPSKEMIFLIRQGSDEQNAKSGRYS 199
Query: 101 ------TSSTSLVINPVGREDRGIYQCIARRSDGD 129
S +L I+ + ED Y C A
Sbjct: 200 VNFKKAAKSVALTISALQLEDSAKYFC-ALGESLT 233
Score = 28.3 bits (63), Expect = 0.80
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRTSSTS--LVINPVGREDRGIYQCIARRSDGD 129
Y S L + G+ ++ + +++ + D G+Y C +
Sbjct: 51 YDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYY 104
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 38.5 bits (90), Expect = 3e-04
Identities = 30/140 (21%), Positives = 49/140 (35%), Gaps = 36/140 (25%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEV-----RLQVSTPYRVDVNPPLLSVHLDGSANFQC-- 76
+T+EDS Y C+ + G + + + VS+ + P L V L A+ C
Sbjct: 86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS 145
Query: 77 -EITPYDSGPYLIAWFKDGRQIPGR-----------------------TSST--SLVINP 110
+ + +G + W+ Q PG+ S T +L I+
Sbjct: 146 SQSIVHSNGNTYLEWYL---QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 202
Query: 111 VGREDRGIYQCIARRSDGDV 130
V ED G+Y C
Sbjct: 203 VEAEDLGVYYCFQGSHVPYT 222
Score = 28.1 bits (63), Expect = 0.89
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I V AED G Y C +
Sbjct: 198 LKISRVEAEDLGVYYCFQGS 217
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 38.2 bits (89), Expect = 4e-04
Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 21/124 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-------GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ +ED Y C++ + GG V Q V + PP
Sbjct: 93 LAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 152
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIP------------GRTSSTS--LVINPVGREDRG 117
A C I+ + G +AW DG + + S L + P +
Sbjct: 153 ATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR 212
Query: 118 IYQC 121
Y C
Sbjct: 213 SYSC 216
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 38.3 bits (89), Expect = 4e-04
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 13/115 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV------RLQVSTPYRVDVNPPLL-------S 65
L + EDS Y CS+ ++ A E RL V+ + P +
Sbjct: 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAE 161
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
+ A C T + ++W+ +G+++ S+ + + Y
Sbjct: 162 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS 216
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 36.8 bits (85), Expect = 4e-04
Identities = 22/108 (20%), Positives = 31/108 (28%), Gaps = 29/108 (26%)
Query: 61 PPLLSVHLDGSANFQCEITPYDS-GPYLIAWFK----------------DGRQIP---GR 100
P ++ G QC P L+ W D Q GR
Sbjct: 8 PESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGR 67
Query: 101 TS-------STSLVINPVGREDRGIYQC--IARRSDGDVAQGSAELQL 139
SL IN + +DR Y C + DG+ ++L
Sbjct: 68 LKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
Score = 30.7 bits (69), Expect = 0.087
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 19 LAIEGVTAEDSGTYRC-------SSSNIGGEATAEVRLQ 50
L I + +D Y C + + + E+R++
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 36.7 bits (85), Expect = 5e-04
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV 51
L + G+ ED G Y C G + ++ L+V
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
Score = 30.6 bits (69), Expect = 0.089
Identities = 17/121 (14%), Positives = 28/121 (23%), Gaps = 38/121 (31%)
Query: 46 EVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPY---LIAWFKDG-------- 94
+V +Q P + L S C + + + W + G
Sbjct: 1 DVVVQA---------PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVF 51
Query: 95 -------RQIPGR-----------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE 136
R + SL + + ED G Y C+
Sbjct: 52 HQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIW 111
Query: 137 L 137
L
Sbjct: 112 L 112
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 36.5 bits (85), Expect = 6e-04
Identities = 25/110 (22%), Positives = 34/110 (30%), Gaps = 25/110 (22%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTS------------- 102
RVD P ++ S C + W+ R+ PG +
Sbjct: 2 RVDQTPQRITKETGESLTINCVVRDSRCVLSTGYWY---RKPPGSRNEESISDGGRYVET 58
Query: 103 ------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL---GGTR 143
S SL IN + +D G Y+C G A L GGT
Sbjct: 59 VNRGSKSFSLRINDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGGGTV 108
Score = 29.6 bits (67), Expect = 0.16
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG 41
L I +T +DSGTYRC + G
Sbjct: 68 LRINDLTVKDSGTYRCKPESRYG 90
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 37.4 bits (87), Expect = 8e-04
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I V AED G Y C ++ G E++ + P V + PP G A+
Sbjct: 111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAP-TVSIFPPSSEQLTSGGAS 169
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPG 99
C + + + W DG +
Sbjct: 170 VVCFLNNFYPKDINVKWKIDGSERQN 195
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 36.5 bits (84), Expect = 8e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG-GEATAEVRLQV 51
LA+ G+T ED G Y C + G L+V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 27.3 bits (60), Expect = 1.5
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 91 FKDGRQIPGRTSSTSLVINPVGREDRGIYQCI 122
G+ +L ++ + ED G Y C
Sbjct: 80 QSTGQDTEAELQDATLALHGLTVEDEGNYTCE 111
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 36.8 bits (85), Expect = 0.001
Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 4/91 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + T++C ++ E + +V P +
Sbjct: 84 LPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSI 143
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C + + W +G+ ++
Sbjct: 144 TCMVKGFYPPDIYTEWKMNGQPQENYKNTPP 174
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 35.7 bits (82), Expect = 0.001
Identities = 24/107 (22%), Positives = 29/107 (27%), Gaps = 30/107 (28%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYL--IAWFKD----------------GRQIPGRTS 102
PP + SA C + + WF+D GR P +S
Sbjct: 14 PPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASS 73
Query: 103 ------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR 143
L I V D IY C V G GTR
Sbjct: 74 RFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTG------NGTR 114
Score = 30.3 bits (68), Expect = 0.10
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGE 42
L I V D+ Y C +G
Sbjct: 83 LHIRDVRGHDASIYVCRVEVLGLG 106
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 37.1 bits (85), Expect = 0.001
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 17/128 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
+ E +T+ G V T + + V+ A FQC
Sbjct: 137 VIFEVITSGHQGYLAIDEVK--------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSA 188
Query: 79 TPYDSGPYLIAW---------FKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD 129
+ K+ + R S + + D G Y+C+ R G
Sbjct: 189 IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV 248
Query: 130 VAQGSAEL 137
AEL
Sbjct: 249 GISNYAEL 256
Score = 31.3 bits (70), Expect = 0.12
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 6/97 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEI 78
+ T D+G YRC GG + V V + PP L+ Q
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284
Query: 79 TPYDSGPYLIAWF------KDGRQIPGRTSSTSLVIN 109
+ ++A STS I
Sbjct: 285 NSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIG 321
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 36.3 bits (83), Expect = 0.001
Identities = 20/116 (17%), Positives = 31/116 (26%), Gaps = 21/116 (18%)
Query: 25 TAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLL--SVHLDGSANFQCEITPYD 82
TA + S G + + + D P +V G+ +C D
Sbjct: 7 TAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC--QVKD 64
Query: 83 SGPYLIAWFKDGRQIP----------------GRTSST-SLVINPVGREDRGIYQC 121
+ W +Q T S+ I+ V D G Y C
Sbjct: 65 HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
Score = 29.4 bits (65), Expect = 0.32
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 6 VLPGPRTRVLGP-----ILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L R +++ ++I V D G Y CS TA+ + V
Sbjct: 87 ALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT-MPVRTAKSLVTVLGI 139
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.5 bits (81), Expect = 0.001
Identities = 13/69 (18%), Positives = 18/69 (26%), Gaps = 12/69 (17%)
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCI 122
+ C P I W + + I G + E G Y C
Sbjct: 23 TVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 123 ARRSDGDVA 131
R S + A
Sbjct: 79 PRGSKPEDA 87
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 36.6 bits (84), Expect = 0.001
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS-TPYRVDVNPPLLSV--------HLD 69
L I+ DS Y C++S +G +++ +V PP ++V
Sbjct: 102 LKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHT 161
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ + + + Y
Sbjct: 162 QKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYS 212
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 35.4 bits (82), Expect = 0.001
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 20/81 (24%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWF---KDGRQIPGRTSS-----TSL 106
P LS+H L + +C P + AW +G +
Sbjct: 5 QPSLSLHPSQGVSLGDTVTLRCH------LPRMAAWVQLWLNGTLRFDKEKDKEQDAAEF 58
Query: 107 VINPVGREDRGIYQCIARRSD 127
ED G YQC + S+
Sbjct: 59 SFAVTNLEDAGTYQCRYQVSE 79
Score = 28.1 bits (63), Expect = 0.59
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 21 IEGVTAEDSGTYRCSSS 37
ED+GTY+C
Sbjct: 60 FAVTNLEDAGTYQCRYQ 76
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 36.1 bits (83), Expect = 0.002
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 19/120 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT-----------AEVRLQVSTPYRVDVNPPLLSVH 67
L I EDSGTY C++ ++ V P P + +
Sbjct: 73 LHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVE-PKSQPPAKPSVFI- 130
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT------SSTSLVINPVGREDRGIYQC 121
+ N C + + I+ + + S + D C
Sbjct: 131 MKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTC 190
Score = 29.9 bits (67), Expect = 0.20
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 32/94 (34%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------------- 100
P LS+H + +C + + + WF RQ
Sbjct: 8 PSALSLHEGTDSALRCN---FTTTMRSVQWF---RQNSRGSLISLFYLASGTKENGRLKS 61
Query: 101 ------TSSTSLVINPVGREDRGIYQCIARRSDG 128
++L I ED G Y C A
Sbjct: 62 AFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHI 95
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 36.4 bits (84), Expect = 0.002
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 4/91 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANF 74
L I+ ++C +N A E + +V V PP
Sbjct: 307 LPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTL 366
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C +T + + W +G+ ++
Sbjct: 367 TCMVTDFMPEDIYVEWTNNGKTELNYKNTEP 397
Score = 28.3 bits (63), Expect = 1.1
Identities = 19/127 (14%), Positives = 31/127 (24%), Gaps = 17/127 (13%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG------GEATA-EVRLQVSTPYRVDVNPPLLSVHLDGS 71
L + + +ED+ Y C+ G+ T V +T V P+ S
Sbjct: 81 LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSS 140
Query: 72 ANFQCEITPYDSGPYLIAWFKDGR----------QIPGRTSSTSLVINPVGREDRGIYQC 121
C + Y P + W + +S V C
Sbjct: 141 VTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITC 200
Query: 122 IARRSDG 128
Sbjct: 201 NVAHPAS 207
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.2 bits (80), Expect = 0.002
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I V D G YR + + V P
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 27.5 bits (60), Expect = 0.95
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 18/87 (20%)
Query: 60 NPPLLSVHLDGSANFQCEITPYD-SGPYLIAWFK---------DGRQI--------PGRT 101
P +SV A ++ + I WFK G +
Sbjct: 18 KPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNV 77
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDG 128
+ L I V DRG Y+ + D
Sbjct: 78 YTVELHIGKVVLGDRGYYRLEVKAKDT 104
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 36.4 bits (84), Expect = 0.002
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS----TPYRVDVNPPLLSVHLDGSANF 74
L I + ++C ++ A E + + +V PP +
Sbjct: 297 LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSL 356
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPG 99
C IT + + W DG+
Sbjct: 357 TCMITDFFPEDITVEWQSDGQAPEN 381
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 36.0 bits (83), Expect = 0.002
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 11/113 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI----------GGEATAEVRLQVSTPYRVDVNPP-LLSVH 67
L + EDS Y CS+ G T L+ P V V P +
Sbjct: 79 LTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 138
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ + + + Y
Sbjct: 139 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA 191
Score = 26.0 bits (57), Expect = 4.8
Identities = 18/101 (17%), Positives = 27/101 (26%), Gaps = 37/101 (36%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------------------- 99
+P + S +C D + W+ RQ P
Sbjct: 7 HPSWVISKSGTSVKIEC--RSLDFQATTMFWY---RQFPKQSLMLMATSNEGSKATYEQG 61
Query: 100 ---------RTSST--SLVINPVGREDRGIYQCIARRSDGD 129
S T +L + ED Y C + R+ GD
Sbjct: 62 VEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC-SARTSGD 101
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 35.9 bits (83), Expect = 0.002
Identities = 25/155 (16%), Positives = 39/155 (25%), Gaps = 49/155 (31%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN-----------------P 61
L +E T + Y C+S ++G + + P
Sbjct: 75 LILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP 134
Query: 62 PLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG---------------------- 99
L+V +A C +S W+ +Q PG
Sbjct: 135 QSLTVWEGETAILNCSYE--NSAFDYFPWY---QQFPGEGPALLISILSVSDKKEDGRFT 189
Query: 100 -----RTSSTSLVINPVGREDRGIYQCIARRSDGD 129
R SL I D Y C A ++
Sbjct: 190 IFFNKREKKLSLHIADSQPGDSATYFCAAIDTNAY 224
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 34.9 bits (80), Expect = 0.003
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ I ++ +DSG Y+C + +V L+V
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVL 110
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 35.8 bits (82), Expect = 0.003
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV----RLQVSTPYRVDVNPPLL-------SVH 67
L I+ A DS Y C+SS + T RL V + P + +
Sbjct: 103 LEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEIS 162
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ + + + Y
Sbjct: 163 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA 215
Score = 27.3 bits (60), Expect = 2.1
Identities = 15/103 (14%), Positives = 24/103 (23%), Gaps = 36/103 (34%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
P L A +C + G ++ W+ +Q
Sbjct: 33 TPRYLVKGQGQKAKMRCIP---EKGHPVVFWY---QQNKNNEFKFLINFQNQEVLQQIDM 86
Query: 101 -----------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 132
S SL I D +Y C + + Q
Sbjct: 87 TEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQ 129
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 35.6 bits (82), Expect = 0.003
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV------RLQVSTPYRVDVNPPLLSV------ 66
L+ + + DSG Y C+ S G + L V V PP ++V
Sbjct: 76 LSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLN-KVFPPEVAVFEPSEA 134
Query: 67 --HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ + + + Y
Sbjct: 135 EISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA 190
Score = 29.1 bits (65), Expect = 0.49
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 33/96 (34%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------------- 100
P L + + +C T + + W+ RQ GR
Sbjct: 8 PATLVQPVGSPLSLEC--TVEGTSNPNLYWY---RQAAGRGLQLLFYSVGIGQISSEVPQ 62
Query: 101 --------TSSTSLVINPVGREDRGIYQCIARRSDG 128
L + D G Y C S G
Sbjct: 63 NLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVG 98
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 35.4 bits (81), Expect = 0.003
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVST---PYRVDVNPPLLSV--------H 67
L I+ EDS Y C+SS G A +V PP ++V
Sbjct: 78 LKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 137
Query: 68 LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ + + + Y
Sbjct: 138 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA 190
Score = 26.5 bits (58), Expect = 4.0
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 24/97 (24%)
Query: 60 NPPLLSVHLDGSANFQCE-ITPYDS----------GPYLIAWFKDGRQ------IPGRTS 102
P + + C+ ++ + + F +G+ + S
Sbjct: 8 IPSHQIIDMGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFS 67
Query: 103 ST-------SLVINPVGREDRGIYQCIARRSDGDVAQ 132
+L I P ED +Y C + Q
Sbjct: 68 VERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQ 104
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 34.3 bits (79), Expect = 0.004
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ +E + D+G Y C + G + +V + +
Sbjct: 76 VTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIG 109
Score = 28.5 bits (64), Expect = 0.46
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 29/96 (30%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSG--PYLIAWFK----------------DGRQIPGRTS 102
P +S GS QC Y SG Y W + + R S
Sbjct: 8 PEEVSGQEQGSLTVQC---RYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVS 64
Query: 103 --------STSLVINPVGREDRGIYQCIARRSDGDV 130
++ + + D GIY C + D
Sbjct: 65 IRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDP 100
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 35.1 bits (81), Expect = 0.004
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSN------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSA 72
L + G+ +D Y C S GG V Q V + PP A
Sbjct: 70 LTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKA 129
Query: 73 NFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C I+ + G +AW D + +T+
Sbjct: 130 TLVCLISDFYPGAVTVAWKADSSPVKAGVETTT 162
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 35.0 bits (80), Expect = 0.004
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 19 LAIEGVTAEDSGTYRCS----SSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
+ + + C+ + + +TP + P
Sbjct: 79 VPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTL 138
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 108
C + + I W +D R +P T+ V+
Sbjct: 139 SCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVL 172
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 33.8 bits (78), Expect = 0.005
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT 44
L I + EDSGTY+C + T
Sbjct: 68 LTIRDLRVEDSGTYKCKAYRRCAFNT 93
Score = 28.4 bits (64), Expect = 0.43
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 22/92 (23%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------------- 101
RVD P + + S C + W+ R G T
Sbjct: 2 RVDQTPRIATKETGESLTINCVLRDTACALDSTNWY---RTKLGSTKEQTISIGGRYSET 58
Query: 102 -----SSTSLVINPVGREDRGIYQCIARRSDG 128
+S SL I + ED G Y+C A R
Sbjct: 59 VDEGSNSASLTIRDLRVEDSGTYKCKAYRRCA 90
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 35.2 bits (81), Expect = 0.005
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG----GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L + + Y+C SN E T +V PP +
Sbjct: 316 LTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSL 375
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C + + + W +G+ ++
Sbjct: 376 TCLVKGFYPSDIAVEWESNGQPENNYKTTPP 406
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 34.6 bits (79), Expect = 0.006
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 19 LAIEGVTAEDSGTYRCSSS---------NIGGEATAEVRLQVSTPYRVDVNPP-LLSVHL 68
+ + + EDS Y C+SS G T L+ TP +V + P +
Sbjct: 77 MNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIAN 136
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C + ++W+ +G+++ S+ +E Y
Sbjct: 137 KQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDP----QAYKESNYSYS 184
Score = 26.9 bits (59), Expect = 2.5
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 35/91 (38%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P + G + C SG + W+ +Q G+
Sbjct: 8 SPRHIIKEKGGRSVLTCIP---ISGHSNVVWY---QQTLGKELKFLIQHYEKVERDKGFL 61
Query: 101 ----------TSSTSLVINPVGREDRGIYQC 121
+ + ++ + ED +Y C
Sbjct: 62 PSRFSVQQFDDYHSEMNMSALELEDSAMYFC 92
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 34.6 bits (79), Expect = 0.007
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG----------GEATAEVRLQVSTPYRVDVNPPLLSVHL 68
L + + Y C+SS+ E V P P +
Sbjct: 78 LTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISH 137
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C T + ++W+ +G+++ S+ + + Y
Sbjct: 138 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS 189
Score = 25.4 bits (55), Expect = 9.9
Identities = 13/91 (14%), Positives = 21/91 (23%), Gaps = 35/91 (38%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P L + CE + + W+ RQ PG+
Sbjct: 9 SPKYLFRKEGQNVTLSCEQ---NLNHDAMYWY---RQDPGQGLRLIYYSQIVNDFQKGDI 62
Query: 101 ----------TSSTSLVINPVGREDRGIYQC 121
S L + + Y C
Sbjct: 63 AEGYSVSREKKESFPLTVTSAQKNPTAFYLC 93
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 33.6 bits (77), Expect = 0.008
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 16/95 (16%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWF-------------KDGRQIPGRTS 102
VD P + S C + W+ GR +
Sbjct: 2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK 61
Query: 103 ---STSLVINPVGREDRGIYQCIARRSDGDVAQGS 134
S SL I+ + ED G Y+C A GS
Sbjct: 62 GSKSFSLRISDLRVEDSGTYKCQAFYVFFAEDVGS 96
Score = 31.7 bits (72), Expect = 0.035
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I + EDSGTY+C +
Sbjct: 68 LRISDLRVEDSGTYKCQAFY 87
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 34.2 bits (78), Expect = 0.009
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 29/91 (31%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------------- 100
P + + + + C + Y+ W+ RQ+P +
Sbjct: 6 PNSMESNEEEPVHLPCNHSTISGTDYI-HWY---RQLPSQGPEYVIHGLTSNVNNRMASL 61
Query: 101 -----TSSTSLVINPVGREDRGIYQCIARRS 126
S++L+++ D +Y CI +
Sbjct: 62 AIAEDRKSSTLILHRATLRDAAVYYCILPLA 92
Score = 33.8 bits (77), Expect = 0.012
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV------RLQVSTPYRVDVNPPLLSVHL---D 69
L + T D+ Y C GG + ++ L V NP L
Sbjct: 72 LILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVH---PNIQNPDPAVYQLRDSK 128
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQC 121
S C T +DS + I +T S + V ++ + C
Sbjct: 129 SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFAC 185
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 34.3 bits (77), Expect = 0.009
Identities = 13/73 (17%), Positives = 15/73 (20%), Gaps = 5/73 (6%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR 113
V C+ D I W D + T L I
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTCDTPEEDG----ITWTLDQSSEVLGSGKT-LTIQVKEF 60
Query: 114 EDRGIYQCIARRS 126
D G Y C
Sbjct: 61 GDAGQYTCHKGGE 73
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 33.3 bits (76), Expect = 0.010
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATA---EVRLQVSTPYRVD 58
+ + + EDSG Y+C E +RL V+ +
Sbjct: 83 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTLEHHHH 125
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 33.7 bits (77), Expect = 0.011
Identities = 12/107 (11%), Positives = 27/107 (25%), Gaps = 16/107 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHL---------- 68
L T+ C+++ + ++ N VHL
Sbjct: 68 LPGCAEPWNHGKTFTCTAAYPESKTP------LTATLSKSGNTFRPEVHLLPPPSEELAL 121
Query: 69 DGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED 115
+ C + L+ W + +++P T +
Sbjct: 122 NELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT 168
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.9 bits (74), Expect = 0.015
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGG 41
IL E V D+G+YRCS++
Sbjct: 74 ILHFEPVLPNDNGSYRCSANFQSN 97
Score = 25.2 bits (54), Expect = 7.1
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 101 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG-GTRNIKHYNN 150
S L PV D G Y+C A + S L + + H+++
Sbjct: 70 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKHHHHHHHH 120
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 33.4 bits (76), Expect = 0.017
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT-AEVRLQVSTPYRVDVNPPLLSVHL-DGSANFQC 76
L I+G EDS TY C+ + L V P + +P + + S C
Sbjct: 74 LYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVI-PNIQNPDPAVYQLRDSKSSDKSVC 132
Query: 77 EITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQC 121
T +DS + I +T S + V ++ + C
Sbjct: 133 LFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNKSDFAC 182
Score = 29.5 bits (66), Expect = 0.32
Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 32/95 (33%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P L V S NF C S Y + W+ R +
Sbjct: 6 SPQSLHVQEGDSTNFTCSFP--SSNFYALHWY---RWETAKSPEALFVMTLNGDEKKKGR 60
Query: 101 --------TSSTSLVINPVGREDRGIYQCIARRSD 127
+ L I ED Y C +
Sbjct: 61 ISATLNTKEGYSYLYIKGSQPEDSATYLCARNTGN 95
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer,
SCFV, variable domain, immune system; 2.60A {Mus
musculus} SCOP: b.1.1.1 b.1.1.1
Length = 240
Score = 33.1 bits (76), Expect = 0.019
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 28/98 (28%)
Query: 19 LAIEGVTAEDSGTYRCSSSN----------------IGGEATAEVRLQVSTPYRVDVNPP 62
L I+ V A+D TY C +N G EV+LQ S V+ P
Sbjct: 77 LIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVE---P 133
Query: 63 LLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
SV L C + ++ + W K Q P +
Sbjct: 134 GASVKL------SCTASGFNIKDTYMHWVK---QRPEQ 162
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 32.6 bits (74), Expect = 0.019
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA--TAEVRLQV 51
+ I + D+GT+ C N T++V L V
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117
Score = 27.6 bits (61), Expect = 0.85
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 69 DGSANFQCEITPYDSGPYLIAW--FKDGRQIPGRTSST--SLVINPVGREDRGIYQCIAR 124
+G + PY+ FK+ Q G S S+VI+ + D G + C +
Sbjct: 42 EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVK 101
Query: 125 RSDGDVAQGSAELQL 139
D+ ++++ L
Sbjct: 102 NP-PDIVGKTSQVTL 115
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 32.6 bits (74), Expect = 0.019
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
+ +E + D+ TY C G + V++ +
Sbjct: 77 VTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
Score = 27.2 bits (60), Expect = 1.5
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 29/96 (30%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSG--PYLIAWFK----------------DGRQIPGRTS 102
P ++ GS QC Y SG YL W + + R S
Sbjct: 9 PTTVNGLERGSLTVQC---VYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVS 65
Query: 103 --------STSLVINPVGREDRGIYQCIARRSDGDV 130
+ ++ + + + D Y C ++ D+
Sbjct: 66 IKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDL 101
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system;
2.21A {Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 32.3 bits (74), Expect = 0.020
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG 41
L I + EDSGTY+C +
Sbjct: 68 LRISDLRVEDSGTYKCQADYSPS 90
Score = 31.5 bits (72), Expect = 0.031
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 24/109 (22%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-------------- 101
VD P ++ S +C + + G W+ R G T
Sbjct: 2 WVDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWY---RTQLGSTNEKTISIGGRYDET 58
Query: 102 -----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL--GGTR 143
S SL I+ + ED G Y+C A S + S E + GT
Sbjct: 59 VDKGSKSFSLRISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEGAGTV 107
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 33.4 bits (76), Expect = 0.021
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 4/93 (4%)
Query: 27 EDSGTYRCSSSNIGGEATAEVRLQVSTPYRVD----VNPPLLSVHLDGSANFQCEITPYD 82
T+ C+++ + L S + PP + L+ C +
Sbjct: 319 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS 378
Query: 83 SGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED 115
L+ W + +++P T +
Sbjct: 379 PKDVLVRWLQGSQELPREKYLTWASRQEPSQGT 411
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 32.1 bits (72), Expect = 0.022
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 18 ILAIEGVTAEDSGTYRCSSSNIGG 41
+L + + D+G+Y CS++
Sbjct: 80 VLHFKPIHLSDNGSYSCSTNFNSQ 103
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 33.6 bits (75), Expect = 0.022
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLS 65
+ L I ++ DSG Y+C S + ++ V V P +
Sbjct: 580 YGLMGRKNLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLEVKVVPKPVV 633
Score = 32.8 bits (73), Expect = 0.037
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS------LVINPVGREDRGIYQ 120
G+A +C S + W + + L+I + D G+YQ
Sbjct: 546 KHGGTAELKC---SQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQ 602
Query: 121 CIA 123
C++
Sbjct: 603 CLS 605
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 32.2 bits (73), Expect = 0.022
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 21/95 (22%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFK---------DGRQIP-------GR----TSS 103
++V + + + WF D R+ GR S
Sbjct: 14 MTVVSGSNVTLNISESL-PENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 104 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 138
+L I+ V +ED Y + G+ + +LQ
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
Score = 31.8 bits (72), Expect = 0.037
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-GGEATAEVRLQVSTP 54
L I V ED+ TY G E +++LQV P
Sbjct: 75 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDP 111
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 32.9 bits (75), Expect = 0.026
Identities = 31/136 (22%), Positives = 43/136 (31%), Gaps = 21/136 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
LAI G+ AED Y C+S N G V Q V + PP
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGR--------------TSSTSLVINPVGREDRG 117
A C I+ + G +AW DG + +S+ L + P +
Sbjct: 132 ATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR 191
Query: 118 IYQCIARRSDGDVAQG 133
Y C V +
Sbjct: 192 SYSCQVTHEGSTVEKT 207
Score = 31.4 bits (71), Expect = 0.11
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYR----VDVNPPLLSVHLDGSANF 74
L + D Y+C SN A E + + V PP +
Sbjct: 386 LTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSL 445
Query: 75 QCEITPYDSGPYLIAWFKDG 94
C + + + W +G
Sbjct: 446 TCLVKGFYPSDIAVEWESNG 465
Score = 30.2 bits (68), Expect = 0.28
Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 15/118 (12%)
Query: 19 LAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L++ + +Y C S + + V P G+A
Sbjct: 180 LSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAAL 239
Query: 75 QCEITPYDSGPYLIAW-----------FKDGRQIPGRTSSTSLVINPVGREDRGIYQC 121
C + Y P ++W F Q G S +S+V P Y C
Sbjct: 240 GCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYIC 297
Score = 26.3 bits (58), Expect = 5.0
Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 31/94 (32%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------------- 100
PP S C T SG + W+ +Q+PG
Sbjct: 7 PPSASGTPGQRVTISC--TGTSSGSITVNWY---QQLPGMAPKLLIYRDAMRPSGVPTRF 61
Query: 101 -----TSSTSLVINPVGREDRGIYQCIARRSDGD 129
+S SL I+ + ED Y C A + D
Sbjct: 62 SGSKSGTSASLAISGLEAEDESDYYC-ASWNSSD 94
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 33.1 bits (74), Expect = 0.027
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 80 PYDSGPYLIAWFKDGRQIPGRTSST-----SLVINPVGREDRGIYQCIA 123
P +S +W L I + + G Y C A
Sbjct: 523 PMESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEA 571
Score = 32.3 bits (72), Expect = 0.050
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSS 36
P + IL IE +TA+ G Y C +
Sbjct: 545 PGHQSPNCILFIENLTAQQYGHYFCEA 571
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.9 bits (72), Expect = 0.029
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 19 LAIEGVTAEDSGTYRC---SSSNIGGEATAEVRLQVS 52
+ + + EDSG Y C S+ + L VS
Sbjct: 86 VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVVS 122
Score = 28.4 bits (63), Expect = 0.46
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 24/103 (23%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------DGRQIPGRTS-- 102
+L + +C+ P S W K R +
Sbjct: 17 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIW 76
Query: 103 ------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
++ + + ED G Y C R + S L
Sbjct: 77 DDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYL 119
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 32.3 bits (74), Expect = 0.032
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI---------GGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
L+I + ED Y C + GG V Q + + V PP +
Sbjct: 77 LSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKE 136
Query: 70 GSANFQCEITPYDSGPYLIAWFKDG 94
A C I+ + +AW +G
Sbjct: 137 NKATLVCLISNFSPSGVTVAWKANG 161
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 31.4 bits (71), Expect = 0.040
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 10 PRTRVLGPI------LAIEGVTAEDSGTYRCSSSNIG--GEATAEVRLQV 51
R ++ G + L I+ VT +D GTY C G + E++L +
Sbjct: 59 SRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108
Score = 30.7 bits (69), Expect = 0.061
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 6/93 (6%)
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGR-QIPGRTSST--SL 106
+ P + P + QC + + + K R Q+ G + SL
Sbjct: 17 SYTLPTSGTLVP--MCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSL 74
Query: 107 VINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
+I V +D G Y C + G + EL+L
Sbjct: 75 IIKNVTLDDHGTYCCRIQFP-GLMNDKKLELKL 106
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 31.1 bits (70), Expect = 0.046
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 22/77 (28%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST------------------S 105
+ V+ A F ++ S WF +G ++
Sbjct: 18 VQVYDGEDAVFSLDL----STIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHR 73
Query: 106 LVINPVGREDRGIYQCI 122
L+++ V +D G
Sbjct: 74 LILHAVKHQDSGALVGF 90
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 32.0 bits (73), Expect = 0.050
Identities = 24/123 (19%), Positives = 32/123 (26%), Gaps = 20/123 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSS-------NIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I A D Y C S G V Q + V + PP
Sbjct: 72 LTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQ 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST-------------SLVINPVGREDRGI 118
A C I + + W DG I +T L + + R
Sbjct: 132 ATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNT 191
Query: 119 YQC 121
+ C
Sbjct: 192 FIC 194
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.052
Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 11/91 (12%)
Query: 59 VNPPLLSVHLDGSANFQCEITPYDSG-----PYLIAWFKDGRQIPGRT-----SSTSLVI 108
++P V L + C + I W + IP + S V
Sbjct: 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVT 67
Query: 109 NPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
C + G + Q + +
Sbjct: 68 FTDIASLNIQLTCNI-LTFGQLEQNVYGITI 97
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 32.1 bits (73), Expect = 0.054
Identities = 6/47 (12%), Positives = 13/47 (27%)
Query: 53 TPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+V PP + C + + + W +G+
Sbjct: 241 REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 287
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 31.8 bits (72), Expect = 0.056
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 18 ILAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I + ++C ++ E T +V PP +
Sbjct: 69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVS 128
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C IT + + W +G+ ++
Sbjct: 129 LTCMITDFFPEDITVEWESNGQPAENYKNTQP 160
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 31.4 bits (70), Expect = 0.057
Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 38/103 (36%)
Query: 57 VDVNPPLLSVHLDGSANFQCEIT-PYDSGPYLIAWFKD---------------------- 93
V + VH G+ C D+ P +I+W K
Sbjct: 7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 66
Query: 94 ---------------GRQIPGRTSSTSLVINPVGREDRGIYQC 121
GR ++ +L + V +D G Y C
Sbjct: 67 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWC 109
Score = 28.7 bits (63), Expect = 0.45
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQ 50
P L + V +D G Y C + + +
Sbjct: 92 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 128
Score = 31.0 bits (70), Expect = 0.060
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
R +V GP + + V E + + S + ++ ++ P V +
Sbjct: 23 RIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANP---SGASTECFVTDNA 79
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+Q E TP++ G +++ D IP
Sbjct: 80 DGTYQVEYTPFEKGLHVVEVTYDDVPIPN 108
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.0 bits (70), Expect = 0.061
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 5/38 (13%)
Query: 19 LAIEGVTAEDSGTYRC--SSSNIGGEAT---AEVRLQV 51
L + + +D G Y+C G L V
Sbjct: 71 LRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSV 108
Score = 28.7 bits (64), Expect = 0.37
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 99 GRTSST----SLVINPVGREDRGIYQC 121
GRTS +L ++ + +D+G+YQC
Sbjct: 60 GRTSFDSDSWTLRLHNLQIKDKGLYQC 86
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 30.6 bits (69), Expect = 0.064
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 21 IEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
+ + ED+G Y C + G ++ +VS +++ PP
Sbjct: 72 MVTLQEEDAGEYGCM---VDGARGPQILHRVS----LNILPP 106
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 115
Score = 30.9 bits (70), Expect = 0.066
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 10 PRTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLD 69
+ R GP L G+ A + + + G + +Q+ P + P ++ +
Sbjct: 12 SKVRASGPGLNASGIPASLPVEFTIDARDAGE---GLLTVQILDP---EGKPKKANIRDN 65
Query: 70 GSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
G + P SG Y I G +IP
Sbjct: 66 GDGTYTVSYLPDMSGRYTITIKYGGDEIPY 95
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 31.5 bits (71), Expect = 0.072
Identities = 19/96 (19%), Positives = 26/96 (27%), Gaps = 33/96 (34%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P LS+ + C S + W+ RQ PG
Sbjct: 7 SPQFLSIQEGENLTVYCN---SSSVFSSLQWY---RQEPGEGPVLLVTVVTGGEVKKLKR 60
Query: 101 --------TSSTSLVINPVGREDRGIYQCIARRSDG 128
+SL I D G+Y C S G
Sbjct: 61 LTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
Score = 29.6 bits (66), Expect = 0.34
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT--AEVRLQVSTPYRVDVNPPLLSVHL-DGSANFQ 75
L I D+G Y C+ + G +L V P + +P + + S
Sbjct: 74 LHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSV-KPNIQNPDPAVYQLRDSKSSDKSV 132
Query: 76 CEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C T +DS + I +T
Sbjct: 133 CLFTDFDSQTNVSQSKDSDVYITDKTVLDM 162
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 30.6 bits (69), Expect = 0.078
Identities = 14/104 (13%), Positives = 24/104 (23%), Gaps = 30/104 (28%)
Query: 55 YRVDVNPPLLSVHLDGSA----NFQCEITPYDSGPYLIAWFKDG-------------RQI 97
+ V P + F S W+ D + +
Sbjct: 2 WGVSS-PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLV 60
Query: 98 PGRTS------------STSLVINPVGREDRGIYQCIARRSDGD 129
R +L++ + ED G Y SD +
Sbjct: 61 DKRFRGRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSN 104
Score = 28.3 bits (63), Expect = 0.59
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 19 LAIEGVTAEDSGTYRC 34
L ++ + EDSGTY
Sbjct: 81 LLLKDLKPEDSGTYNF 96
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 30.0 bits (67), Expect = 0.079
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 80 PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSD 127
P DS + W K+G+++P + ++ + ED G Y C S+
Sbjct: 22 PLDSDE-NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASN 68
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 31.5 bits (72), Expect = 0.080
Identities = 28/158 (17%), Positives = 43/158 (27%), Gaps = 63/158 (39%)
Query: 24 VTAEDSGTYRC--------------------------SSSNIGGEATAEVRLQVSTPYRV 57
V++ED+ TY C S G +++ L S
Sbjct: 93 VSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQS----- 147
Query: 58 DVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR----------------- 100
P ++S C + S +L W+ +Q PG
Sbjct: 148 ---PAIMSASPGEKVTLTCSASSSVSSSHL-YWY---QQKPGSSPKLWIYSTSNLASGVP 200
Query: 101 ---TSSTS-----LVINPVGREDRGIYQCIARRSDGDV 130
+ S S L I+ + ED Y C S
Sbjct: 201 ARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFT 238
Score = 26.5 bits (59), Expect = 3.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I + AED+ +Y C +
Sbjct: 214 LTISSMEAEDAASYFCHQWS 233
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 31.1 bits (71), Expect = 0.10
Identities = 20/100 (20%), Positives = 26/100 (26%), Gaps = 27/100 (27%)
Query: 19 LAIEGVTAEDSGTYRC-------------------SSSNIGGEATAEVRLQVSTPYRVDV 59
L I V AED G Y C GG + +V
Sbjct: 78 LKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQL-----Q 132
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ C+ T Y Y + W +Q PG
Sbjct: 133 QSGPELKKPGETVKISCKATNYAFTDYSMHWV---KQAPG 169
Score = 25.3 bits (56), Expect = 9.7
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 31/89 (34%)
Query: 61 PPLLSVHLDGSANFQC---EITPYDSGPYLIAWFKDGRQIPGR----------------- 100
P L V L A+ C + +++G + W+ Q PG+
Sbjct: 8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWY---LQKPGQSPQLLIYKVSNRFSGVP 64
Query: 101 ------TSST--SLVINPVGREDRGIYQC 121
S T +L I+ V ED GIY C
Sbjct: 65 DRFSGSGSGTDFTLKISRVEAEDLGIYYC 93
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 30.3 bits (68), Expect = 0.10
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 10 PRTRVLGPI------LAIEGVTAEDSGTYRCSSSNIG--GEATAEVRLQV 51
R + G I L IE DSG Y C G + LQV
Sbjct: 60 SRYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQV 109
Score = 27.6 bits (61), Expect = 1.1
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 28/88 (31%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK---------------DGRQIPGRTSST- 104
+ + C + G W + +G ++ + SS
Sbjct: 4 YVEVKGVVGHPVTLPCTYST-YRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 105 -----------SLVINPVGREDRGIYQC 121
SL I D G+Y C
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCC 90
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 29.9 bits (68), Expect = 0.13
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 38/111 (34%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------------------- 99
+P LS+H + +C + + + WF RQ
Sbjct: 7 SPSALSLHEGTDSALRCN---FTTTMRSVQWF---RQNSRGSLISLFYLASGTKENGRLK 60
Query: 100 ------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG-GTR 143
R ++L I ED G Y C A S GS +L G GT+
Sbjct: 61 SAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS-----SGSWQLIFGSGTQ 106
Score = 26.1 bits (58), Expect = 2.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG 41
L I EDSGTY C++ G
Sbjct: 73 LHIRDAQLEDSGTYFCAAEASSG 95
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 30.7 bits (69), Expect = 0.13
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 16/114 (14%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----------GGEATAEVRLQVSTPYRVDVNPP-LLSV 66
L +E T + Y C+S G T L+ TP +V + P +
Sbjct: 74 LILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEI 133
Query: 67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQ 120
A C + ++W+ +G+++ S+ +E Y
Sbjct: 134 ANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDP----QAYKESNYSYC 183
Score = 28.4 bits (63), Expect = 0.82
Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 35/99 (35%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG-------------------- 99
+P G C+ + + W+ RQ G
Sbjct: 5 SPRNKVAVTGGKVTLSCQ---QTNNHNNMYWY---RQDTGHGLRLIHYSYGAGSTEKGDI 58
Query: 100 -------RTSST--SLVINPVGREDRGIYQCIARRSDGD 129
R S SL++ +Y C + G
Sbjct: 59 PDGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGS 97
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 30.8 bits (70), Expect = 0.13
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT 44
L +E + + Y C+SS+ G+
Sbjct: 212 LTLESASPSQTSLYFCASSDAPGQLY 237
Score = 28.9 bits (65), Expect = 0.51
Identities = 22/164 (13%), Positives = 31/164 (18%), Gaps = 60/164 (36%)
Query: 19 LAIEGVTAEDSGTYRCSSS--------------------NIGGEATAEVRLQVSTPYRVD 58
L V DS Y C+ S GG S +
Sbjct: 78 LRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSE 137
Query: 59 VN----PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG--------------- 99
P + C + + W+ RQ G
Sbjct: 138 AAVTQSPRNKVTVTGENVTLSCR---QTNSHNYMYWY---RQDTGHELRLIYYSYGAGNL 191
Query: 100 ------------RTSSTS--LVINPVGREDRGIYQCIARRSDGD 129
RT+ L + +Y C A
Sbjct: 192 QIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFC-ASSDAPG 234
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 30.7 bits (69), Expect = 0.13
Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 32/97 (32%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
P LSV + C T DS Y + WF RQ PG+
Sbjct: 6 IPAALSVPEGENLVLNCSFT--DSAIYNLQWF---RQDPGKGLTSLLLIQSSQREQTSGR 60
Query: 101 --------TSSTSLVINPVGREDRGIYQCIARRSDGD 129
+ ++L I D Y C R + G
Sbjct: 61 LNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGG 97
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 29.9 bits (67), Expect = 0.14
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 10 PRTRVLGPI------LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVS 52
R ++ G I L IE D G Y C G + L+V
Sbjct: 61 SRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
Score = 28.4 bits (63), Expect = 0.44
Identities = 12/88 (13%), Positives = 20/88 (22%), Gaps = 27/88 (30%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK---------------DGRQIPGRTSST- 104
+ C + + G + W +G + + +S
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 105 -----------SLVINPVGREDRGIYQC 121
SL I D G Y C
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCC 91
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.9 bits (67), Expect = 0.14
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIG--GEATAEVRLQVST 53
L I DSG Y C G + VRL++
Sbjct: 75 LTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111
Score = 27.2 bits (60), Expect = 1.4
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 28/103 (27%)
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFK---------------DGRQIPGRTSS----- 103
+ L C + + W K DG +I R S+
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 104 -------TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
SL I+ R D G+Y C G ++L
Sbjct: 66 GKVQFGEVSLTISNTNRGDSGVYCCRIEVP-GWFNDVKKNVRL 107
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 30.6 bits (69), Expect = 0.14
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 26/99 (26%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------DGRQIPGRTSS 103
+P L+V +A C DS W+ ++ GR +
Sbjct: 6 SPQSLTVWEGETAILNCSYE--DSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTI 63
Query: 104 T--------SLVINPVGREDRGIYQCIARRSDGDVAQGS 134
SL I D Y C A + G+
Sbjct: 64 FFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGT 102
Score = 29.5 bits (66), Expect = 0.33
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ-CE 77
L I DS TY C++S+ +L V P + P + + S + C
Sbjct: 74 LHIADSQPGDSATYFCAASDNRIFFGDGTQLVVK-PNIQNPEPAVYQLKDPRSQDSTLCL 132
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRT 101
T +DS + + G I +T
Sbjct: 133 FTDFDSQINVPKTMESGTFITDKT 156
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 29.9 bits (67), Expect = 0.16
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
+ GP L+ GV A + + + G + +Q++ + P VH +
Sbjct: 23 KVTASGPGLSSYGVPASLPVDFAIDARDAGE---GLLAVQITDQ---EGKPKRAIVHDNK 76
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ P +G Y+I G IP
Sbjct: 77 DGTYAVTYIPDKTGRYMIGVTYGGDDIPL 105
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 30.3 bits (69), Expect = 0.18
Identities = 26/124 (20%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-------IGGEATAEVRLQ-VSTPYRVDVNPPLLSVHLDG 70
L I G ED Y C SS G V S+P +V V PP
Sbjct: 71 LTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSP-KVTVFPPSPEELRTN 129
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQI--------PGRTSST-----SLVINPVGREDRG 117
A C + + G + W +G I P + L + +
Sbjct: 130 KATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHN 189
Query: 118 IYQC 121
C
Sbjct: 190 RVSC 193
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 29.6 bits (67), Expect = 0.19
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT 44
L I+ + ED+G Y C
Sbjct: 79 LTIQNIQYEDNGIYFCKQKCDSANHN 104
Score = 28.1 bits (63), Expect = 0.67
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 24/79 (30%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT---------------SST 104
+P + F C Y + + WF R+ + + +
Sbjct: 23 HPRFAAKKRSSMVKFHC----YTNHSGALTWF---RKRGSQQPQELVSEEGRIVQTQNGS 75
Query: 105 --SLVINPVGREDRGIYQC 121
+L I + ED GIY C
Sbjct: 76 VYTLTIQNIQYEDNGIYFC 94
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 30.3 bits (68), Expect = 0.19
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 25/120 (20%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI--------GGEATAEVRLQVSTP----YRVDVNPPLLSV 66
L ++ + +DS +Y C+ G + V + P Y++ +
Sbjct: 72 LLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRDS------ 125
Query: 67 HLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQC 121
S C T +DS + I + S + V ++ + C
Sbjct: 126 --KSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFAC 183
Score = 28.7 bits (64), Expect = 0.59
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 25/91 (27%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK---------------DGRQIPGRTSST- 104
P ++ C SG + W++ DG + GR SS
Sbjct: 6 PTEMTATEGAIVQINCTYQ--TSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFL 63
Query: 105 -------SLVINPVGREDRGIYQCIARRSDG 128
L++ + +D Y C + S G
Sbjct: 64 SRSKGYSYLLLKELQMKDSASYLCAVQASGG 94
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 30.0 bits (67), Expect = 0.19
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 21/91 (23%)
Query: 60 NPPLLSVHLDGSANFQC--EITPYDS----------GP-YLIAWFKDGRQIPGRTSST-- 104
+P LSV G A+ C + GP L++ F DG + GR ++
Sbjct: 8 SPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLN 67
Query: 105 ------SLVINPVGREDRGIYQCIARRSDGD 129
SL I D +Y C A +
Sbjct: 68 KASLHVSLHIRDSQPSDSALYFCAASEQNNY 98
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 30.1 bits (67), Expect = 0.20
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVH-LDGSANFQCE 77
L I +D+ TY C + G + PY + P + + + C
Sbjct: 75 LHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQLKDPRSQDSTLCL 134
Query: 78 ITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQC 121
T +DS + + G I + + S + ++ + C
Sbjct: 135 FTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTC 183
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 30.0 bits (68), Expect = 0.20
Identities = 27/122 (22%), Positives = 35/122 (28%), Gaps = 19/122 (15%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I G ED Y C+ + GG V Q + V + PP A
Sbjct: 75 LTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKAT 134
Query: 74 FQCEITPYDSGPYLIAWFKDGRQIP------------GRTSSTS--LVINPVGREDRGIY 119
C IT + G + W DG + S L + E Y
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY 194
Query: 120 QC 121
C
Sbjct: 195 SC 196
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 29.4 bits (66), Expect = 0.23
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTP 54
L I V ED GTY E ++ L+V P
Sbjct: 75 LHISNVRKEDKGTYYMRVLR-ETENELKITLEVFDP 109
Score = 27.5 bits (61), Expect = 0.95
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 22/87 (25%)
Query: 56 RVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQI-----------------P 98
R + P ++ + + + P I W Q
Sbjct: 5 RARGSIPDINAYTGSNVTLKIHKDPLGP-YRRITWLHTKNQKILEYNYNSTKTIFESEFK 63
Query: 99 GR----TSSTSLVINPVGREDRGIYQC 121
GR ++ +L I+ V +ED+G Y
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYM 90
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 29.7 bits (66), Expect = 0.23
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 54 PYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR 113
+ V V P L+V GS C T + P + +I +
Sbjct: 2 VFEVHVRPKKLAVEPKGSLEVNCSTT--CNQPEVGGLETSLNKILLDEQAQWKHYLVSNI 59
Query: 114 EDRGIYQCIAR 124
+ QC
Sbjct: 60 SHDTVLQCHFT 70
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.7 bits (64), Expect = 0.23
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 88 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 139
I W + + T L + + RGIY+C + +Q+
Sbjct: 20 ITWVEGTVGTL-LSDITRLDLGKRILDPRGIYRC---NGTDIYKDKESTVQV 67
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.4 bits (66), Expect = 0.23
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATA---EVRLQVS 52
+ + + EDSG Y+C E +RL V+
Sbjct: 78 VRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVT 114
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 30.1 bits (67), Expect = 0.25
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 31/115 (26%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P LS+H + +C + + + WF R+
Sbjct: 9 SPSALSLHEGTGSALRCN---FTTTMRAVQWF---RKNSRGSLINLFYLASGTKENGRLK 62
Query: 101 ------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTRNIKHYN 149
++L I ED G Y C A S+ + +L NI++ +
Sbjct: 63 SAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPD 117
Score = 25.0 bits (54), Expect = 9.6
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA---TAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQ 75
L I EDSGTY C++ RLQV P + +P + + S++
Sbjct: 74 LHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVL-PNIQNPDPAVYQLRDSKSSDKS 132
Query: 76 -CEITPYDS 83
C T +DS
Sbjct: 133 VCLFTDFDS 141
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.1 bits (67), Expect = 0.25
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPP 62
I + DSG + CS + + G V P+ + V
Sbjct: 387 FTIHRILPPDSGVWVCSVNTVAG--------MVEKPFNISVKVL 422
>3l4y_A Maltase-glucoamylase, intestinal; glycoside hydrolase family 31,
cell membrane, disulfide bond, glycoprotein,
glycosidase, hydrolase, membrane; HET: NR4 NAG; 1.80A
{Homo sapiens} PDB: 3l4u_A* 3l4v_A* 3l4w_A* 3l4x_A*
3l4t_A* 3l4z_A* 2qmj_A* 2qly_A* 3ctt_A*
Length = 875
Score = 30.2 bits (68), Expect = 0.30
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 28 DSGTYRCSS-SNIGGEATAE-VRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGP 85
+ + + N TA L S + +V+ LL+ S F ++T +
Sbjct: 49 NHSYHVEGNLVNTNAGFTARLKNLPSSPVFGSNVDNVLLTAEYQTSNRFHFKLTDQTNNR 108
Query: 86 YLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
+ + +S + + + R+ I + RRS+ V
Sbjct: 109 FEVPHEHVQSFSGNAAASLTYQVE-ISRQPFSI--KVTRRSNNRV 150
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 29.5 bits (67), Expect = 0.33
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPP----LLSVHLD 69
IE + +ED Y C S+ GG E++ + P V + PP L S
Sbjct: 95 FTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAP-TVSIFPPSSEQLTS---- 149
Query: 70 GSANFQCEITPYDSGPYLIAWFKDG 94
G A+ C + + + W DG
Sbjct: 150 GGASVVCFLNNFYPKDINVKWKIDG 174
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 29.2 bits (65), Expect = 0.37
Identities = 17/95 (17%), Positives = 27/95 (28%), Gaps = 31/95 (32%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
NPP LS++ + +C + + + WF +Q
Sbjct: 7 NPPALSLYEGADSGLRCN---FSTTMKSVQWF---QQNHRGRLITLFYLAQGTKENGRLK 60
Query: 101 ------TSSTSLVINPVGREDRGIYQCIARRSDGD 129
++L I ED G Y C A
Sbjct: 61 STFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSG 95
Score = 28.1 bits (62), Expect = 1.1
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT----AEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I+ EDSGTY C++ + G L V P + P + + S +
Sbjct: 72 LHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSV-KPNIQNPEPAVYQLKDPRSQDS 130
Query: 75 Q-CEITPYDS 83
C T +DS
Sbjct: 131 TLCLFTDFDS 140
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 28.4 bits (63), Expect = 0.41
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 19 LAIEGVTAEDSGTYRC--SSSNIGGEATAEVRLQV 51
L I + ED+G Y+ ++ T LQ+
Sbjct: 74 LVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 28.5 bits (64), Expect = 0.43
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 62 PLLSVH------LDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST-----SLVINP 110
+ + C + ++ KDG +++ I P
Sbjct: 10 ITIFPNSSLMISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGP 69
Query: 111 VGREDRGIYQCIARRSDG 128
V G Y CI +
Sbjct: 70 VNETITGHYSCIYSKGIT 87
Score = 26.6 bits (59), Expect = 1.6
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 21 IEGVTAEDSGTYRCSSSN 38
I V +G Y C S
Sbjct: 67 IGPVNETITGHYSCIYSK 84
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 28.5 bits (64), Expect = 0.43
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 66 VHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSS-----TSLVINPVGREDRGIYQ 120
+ C + ++ KDG +++ I PV G Y
Sbjct: 20 ISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYS 79
Query: 121 CIARRSDG 128
CI +
Sbjct: 80 CIYSKGIT 87
Score = 25.8 bits (57), Expect = 4.0
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 21 IEGVTAEDSGTYRCSSSN 38
I V +G Y C S
Sbjct: 67 IGPVNETITGHYSCIYSK 84
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.8 bits (64), Expect = 0.43
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L + + E+ G Y CS +
Sbjct: 92 LTLNKFSKENEGYYFCSVIS 111
Score = 25.0 bits (54), Expect = 9.4
Identities = 14/102 (13%), Positives = 24/102 (23%), Gaps = 41/102 (40%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG--------------------- 99
P + L + CE+ S +W Q
Sbjct: 16 PKKMDAELGQKVDLVCEVL--GSVSQGCSWL---FQNSSSKLPQPTFVVYMASSHNKITW 70
Query: 100 -------------RTSST--SLVINPVGREDRGIYQCIARRS 126
R ++ L +N +E+ G Y C +
Sbjct: 71 DEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 112
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 28.3 bits (63), Expect = 0.44
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNP 61
+ +E +T ED+GTY C + + ++V V V P
Sbjct: 70 VTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEV----EVSVFP 108
Score = 26.7 bits (59), Expect = 1.6
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 29/105 (27%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSG--PYLIAWFK---------------DGRQIPGRTS- 102
++ + GS + QC PY+ W + + GR S
Sbjct: 3 ARTVAGPVGGSLSVQC---PYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSI 59
Query: 103 -------STSLVINPVGREDRGIYQC-IARRSDGDVAQGSAELQL 139
S ++ + + ED G Y C + D E+++
Sbjct: 60 RDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEV 104
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 29.2 bits (65), Expect = 0.44
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA-----TAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L DS Y C+ L V P + P + + S +
Sbjct: 75 LQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVV-PNIQNPEPAVYQLKDPRSQD 133
Query: 74 FQ-CEITPYDSGPYLIAWFKDGRQIPGRT 101
C T +DS + + G I +T
Sbjct: 134 STLCLFTDFDSQINVPKTMESGTFITDKT 162
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 105
Score = 28.2 bits (63), Expect = 0.45
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
G + + V P +N + + E P+ G Y + G IPG
Sbjct: 38 GAGIGGLGITVEGPSESKIN-----CRDNKDGSCSAEYIPFAPGDYDVNITYGGAHIPG 91
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 108
Score = 28.2 bits (63), Expect = 0.45
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
+ ++ GP L GV A ++ SS G A + ++V P ++V +G
Sbjct: 13 KVKIAGPGLG-SGVRARVLQSFTVDSSKAGL---APLEVRVLGP---RGLVEPVNVVDNG 65
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
TP GPY+++ +IP
Sbjct: 66 DGTHTVTYTPSQEGPYMVSVKYADEEIPR 94
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10
PDB: 2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 27.7 bits (62), Expect = 0.53
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
+ R GP +E A + + G + + V P + +++
Sbjct: 5 KVRAGGP--GLERAEAGVPAEFSIWTREAGA---GGLAIAVEGPSKAEIS-----FEDRK 54
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ + G Y ++ + IP
Sbjct: 55 DGSCGVAYVVQEPGDYEVSVKFNEEHIPD 83
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin
binding protein, cytoskeleton, complex; 2.32A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 27.7 bits (62), Expect = 0.57
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ L + P + ++ S + P G Y I + + +PG
Sbjct: 37 GGLSLAIEGPSKAEI-----SCTDNQDGTCSVSYLPVLPGDYSILVKYNEQHVPG 86
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 28.1 bits (63), Expect = 0.58
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 25/87 (28%)
Query: 61 PPLLSVH------LDGSANFQCEITPYDSGPYLIAWF---KDGRQIP----------GRT 101
P +S L F C GP + F ++ R
Sbjct: 9 RPSISAEPGTVIPLGSHVTFVC------RGPVGVQTFRLERESRSTYNDTEDVSQASPSE 62
Query: 102 SSTSLVINPVGREDRGIYQCIARRSDG 128
S I+ V + G Y+CI +
Sbjct: 63 SEARFRIDSVSEGNAGPYRCIYYKPPK 89
Score = 27.4 bits (61), Expect = 1.1
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 21 IEGVTAEDSGTYRCSSSNIGG 41
I+ V+ ++G YRC
Sbjct: 69 IDSVSEGNAGPYRCIYYKPPK 89
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction
with GP1BA, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 115
Score = 28.2 bits (63), Expect = 0.59
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ L + P + ++ S + P G Y I + + IPG
Sbjct: 48 DAGEGGLDLAIEGPSKAEI-----SCIDNKDGTCTVTYLPTLPGDYSILVKYNDKHIPG 101
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen,
allergen, antimic bacteriolytic enzyme, glycosidase,
hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A
1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A
1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A
1rih_L 1p2c_A ...
Length = 213
Score = 28.7 bits (65), Expect = 0.63
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLD-GSA 72
L+I V ED G Y C SN GG E++ + P V + PP S L G A
Sbjct: 73 LSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP-TVSIFPP-SSEQLTSGGA 130
Query: 73 NFQCEITPYDSGPYLIAWFKDG 94
+ C + + + W DG
Sbjct: 131 SVVCFLNNFYPKDINVKWKIDG 152
>3top_A Maltase-glucoamylase, intestinal; membrane, hydrolase-hydrolase
inhibitor complex; HET: ACR; 2.88A {Homo sapiens} PDB:
3ton_A*
Length = 908
Score = 29.1 bits (65), Expect = 0.64
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 28 DSGTYRCSSSNIGGEATAEVRLQVSTP----YRVDVNPPLLSVHLDGSANFQCEITPYDS 83
+ ATA++ L+ S VNP L V + Q +I +
Sbjct: 49 NDLYSVSDVQYNSHGATADISLKSSVYANAFPSTPVNPLRLDVTYHKNEMLQFKIYDPNK 108
Query: 84 GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV 130
Y + + +P T L + + GI I R+S G +
Sbjct: 109 NRYEVPVPLNIPSMPSSTPEGQLYDVLIKKNPFGIE--IRRKSTGTI 153
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 28.5 bits (63), Expect = 0.65
Identities = 18/93 (19%), Positives = 26/93 (27%), Gaps = 33/93 (35%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P LS+ +A C Y + + W+ RQ GR
Sbjct: 7 DPQALSIQEGENATMNCS---YKTSINNLQWY---RQNSGRGLVHLILIRSNEREKHSGR 60
Query: 101 --------TSSTSLVINPVGREDRGIYQCIARR 125
S+SL+I D Y C
Sbjct: 61 LRVTLDTSKKSSSLLITASRAADTASYFCATDT 93
Score = 25.4 bits (55), Expect = 7.6
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT----AEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I A D+ +Y C++ G RL+V + +P + + S++
Sbjct: 74 LLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVL-ANIQNPDPAVYQLRDSKSSDK 132
Query: 75 Q-CEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQC 121
C T +DS + I +T S + V ++ + C
Sbjct: 133 SVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFAC 185
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 27.7 bits (61), Expect = 0.68
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 87 LIAWFKDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDG 128
L+A FK + ++ L I + R+D G Y ++G
Sbjct: 38 LVAEFKRKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 83
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.5 bits (63), Expect = 0.70
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 32/96 (33%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+P L + + QC T S + W+ +Q GR
Sbjct: 9 SPQSLIILEGKNCTLQCNYT--VSPFSNLRWY---KQDTGRGPVSLTIMTFSENTKSNGR 63
Query: 101 --------TSSTSLVINPVGREDRGIYQCIARRSDG 128
T +SL I D Y C+
Sbjct: 64 YTATLDADTKQSSLHITASQLSDSASYICVVSDRGS 99
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 28.8 bits (63), Expect = 0.73
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 4/92 (4%)
Query: 19 LAIEGVTAEDSGTYRCSSSN----IGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I + ++C ++ E T ++ PP +
Sbjct: 235 LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSL 294
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTSL 106
C IT + + W +G+ ++ +
Sbjct: 295 TCMITDFFPEDITVEWQWNGQPAENYKNTQPI 326
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.78
Identities = 32/166 (19%), Positives = 49/166 (29%), Gaps = 75/166 (45%)
Query: 17 PILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVN---------PPL---- 63
P+L+I +T E Y + +N A ++++S VN PP
Sbjct: 337 PMLSISNLTQEQVQDY-VNKTN--SHLPAGKQVEISL-----VNGAKNLVVSGPPQSLYG 388
Query: 64 LSVHLDG----SANFQCEI-----------------TPYDSGPYL--------------- 87
L++ L S Q I +P+ S L
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS-HLLVPASDLINKDLVKNN 447
Query: 88 IAWFKDGRQIP------G---RTSSTSLVINPVGREDRGIYQCIAR 124
+++ QIP G R S S+ I CI R
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSGSIS--------ERIVDCIIR 485
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 28.1 bits (63), Expect = 0.79
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 19 LAIEGVTAEDSGTYRCSS 36
L I+G+ ED+G Y C
Sbjct: 82 LTIQGIRFEDNGIYFCQQ 99
Score = 27.3 bits (61), Expect = 1.2
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 29/102 (28%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT-----------------S 102
+P ++ + C + +S ++W +Q S
Sbjct: 24 SPRFIARKRGFTVKMHCYM---NSASGNVSWLW--KQEMDENPQQLKLEKGRMEESQNES 78
Query: 103 STSLVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGGTR 143
+L I + ED GIY C + ++ V QG GT
Sbjct: 79 LATLTIQGIRFEDNGIYFCQQKCNNTSEVYQG------CGTE 114
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 28.1 bits (63), Expect = 0.81
Identities = 23/124 (18%), Positives = 30/124 (24%), Gaps = 41/124 (33%)
Query: 60 NPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR------------------- 100
+SV + C DS +L W+K Q
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLF-WYK---QTASGEIVFLIRQDSYKKENATVG 61
Query: 101 ---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG-GTR-----NI 145
SS L+I ED +Y C R G +L G GT
Sbjct: 62 HYSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGDYG---GSGNKLIFGTGTLLSVKPGS 118
Query: 146 KHYN 149
Sbjct: 119 ADDA 122
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 27.4 bits (61), Expect = 0.84
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
+ R GP +E A + + G + + V P + ++ +
Sbjct: 13 KVRAGGP--GLERGEAGVPAEFSIWTREAGA---GGLSIAVEGPSKAEI-----TFDDHK 62
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ + + G Y ++ + IP
Sbjct: 63 NGSCGVSYIAQEPGNYEVSIKFNDEHIPE 91
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon,
T-cell receptor, signalling, IMMU; 2.50A {Cricetulus
migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Length = 213
Score = 28.3 bits (64), Expect = 0.87
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPP----LLSVHLD 69
I + +ED G+Y C G E++ + P V + PP L +
Sbjct: 73 FTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKP-TVSIFPPSSEQLGT---- 127
Query: 70 GSANFQCEITPYDSGPYLIAWFKDG 94
GSA C + + + W DG
Sbjct: 128 GSATLVCFVNNFYPKDINVKWKVDG 152
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Length = 259
Score = 28.4 bits (64), Expect = 0.89
Identities = 20/105 (19%), Positives = 30/105 (28%), Gaps = 26/105 (24%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLS-------- 65
L I + ED TY C + GG +++ +
Sbjct: 73 LTISSLQPEDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQ 132
Query: 66 VHLD----------GSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
V L S C+ + Y Y + W K Q PG+
Sbjct: 133 VQLQESGAELVKPGASVKLSCKASGYTFTRYYLYWVK---QRPGQ 174
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 28.0 bits (63), Expect = 0.94
Identities = 27/158 (17%), Positives = 42/158 (26%), Gaps = 62/158 (39%)
Query: 24 VTAEDSGTYRC------------------------SSSNIGGEATAEVRLQVSTPYRVDV 59
+T+ D+ Y C S G +E+ + +
Sbjct: 87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQT------- 139
Query: 60 NPPLLSVHLDGSANFQCEIT--PYDSGPYLIAWFKDGRQIPGR----------------- 100
P L+V L A C + G + W++ Q G+
Sbjct: 140 -PASLAVSLGQRATISCRASENVDRYGNSFMHWYQ---QKAGQPPKLLIYRASNLESGIP 195
Query: 101 ------TSST--SLVINPVGREDRGIYQCIARRSDGDV 130
S T +L INPV +D Y C
Sbjct: 196 ARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWT 233
Score = 27.6 bits (62), Expect = 1.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I V A+D TY C SN
Sbjct: 209 LTINPVEADDVATYFCQRSN 228
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 28.0 bits (63), Expect = 1.0
Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 28/94 (29%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR-------------------- 100
PP +S L +A C + G AW +Q G
Sbjct: 146 PPSVSKGLRQTATLTCTGNSNNVGNQGAAWL---QQHQGHPPKLLSYRNNDRPSGISERF 202
Query: 101 -----TSSTSLVINPVGREDRGIYQCIARRSDGD 129
++ SL I + ED Y C S
Sbjct: 203 SASRSGNTASLTITGLQPEDEADYYCSTWDSSLS 236
Score = 26.1 bits (58), Expect = 4.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I G+ ED Y CS+ +
Sbjct: 213 LTITGLQPEDEADYYCSTWD 232
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 28.1 bits (63), Expect = 1.0
Identities = 27/165 (16%), Positives = 43/165 (26%), Gaps = 69/165 (41%)
Query: 24 VTAEDSGTYRC-----------------------------SSSNIGGEATAEVRLQVSTP 54
+T+EDS Y C S G +++ + S
Sbjct: 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQS-- 165
Query: 55 YRVDVNPPLLSVHLDGSANFQCEITPYDSGPYL----IAWFKDGRQIPGR---------- 100
P L+V C+ + +AW++ Q PG+
Sbjct: 166 ------PSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQ---QKPGQSPKLLIYWAS 216
Query: 101 -------------TSST--SLVINPVGREDRGIYQCIARRSDGDV 130
S T +L I+ V ED +Y C
Sbjct: 217 TRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYT 261
Score = 27.3 bits (61), Expect = 1.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I V AED Y C S
Sbjct: 237 LTISSVQAEDLAVYYCKQSY 256
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 28.0 bits (63), Expect = 1.0
Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 41/111 (36%)
Query: 19 LAIEGVTAEDSGTYRC------------------SSSNIGG-----------EATAEVRL 49
L I + ED GTY C G +EV+L
Sbjct: 76 LTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQL 135
Query: 50 QVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
Q S P V P SV + C+ + Y + W K Q PG+
Sbjct: 136 QQSGPELVK---PGASVKI------SCKDSGYAFSSSWMNWVK---QRPGQ 174
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 27.9 bits (63), Expect = 1.0
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 19 LAIEGVTAEDSGTYRCSSSNI-----GGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSAN 73
L I+ V A+D+ Y C S G E++ + P V + PP G A+
Sbjct: 72 LTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAP-TVSIFPPSTEQLATGGAS 130
Query: 74 FQCEITPYDSGPYLIAWFKDG 94
C + + + W DG
Sbjct: 131 VVCLMNNFYPRDISVKWKIDG 151
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 28.1 bits (63), Expect = 1.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L+I V ED G Y C SN
Sbjct: 209 LSINSVETEDFGIYFCQQSN 228
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 27.6 bits (61), Expect = 1.1
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L + + E+ G Y CS +
Sbjct: 87 LTLNKFSKENEGYYFCSVIS 106
Score = 26.4 bits (58), Expect = 2.7
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 99 GRTSST--SLVINPVGREDRGIYQCIARRS 126
R ++ L +N +E+ G Y C +
Sbjct: 78 MRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 27.3 bits (61), Expect = 1.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
+ I DSG Y C + +
Sbjct: 75 MNILDTRRNDSGIYLCGAIS 94
Score = 25.0 bits (55), Expect = 8.2
Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 26/86 (30%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------------DGR-QI 97
P L+V +A F C ++ S ++ W + D R QI
Sbjct: 6 PAWLTVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQI 64
Query: 98 PGRTSST--SLVINPVGREDRGIYQC 121
+ + I R D GIY C
Sbjct: 65 IQLPNRHDFHMNILDTRRNDSGIYLC 90
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 27.9 bits (63), Expect = 1.2
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATA-------EVRLQVSTPYRVDVNPPLLSVHLDGS 71
L I + D+ TY C S+ + V+ P V + PP + G+
Sbjct: 73 LTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAP-TVLIFPPSADLVATGT 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDG 94
C Y + W DG
Sbjct: 132 VTIVCVANKYFPD-VTVTWEVDG 153
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 28.0 bits (62), Expect = 1.2
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 19 LAIEGVTAEDSGTYRC----SSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L I+ ++C E T + +V + PP +
Sbjct: 78 LPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSL 137
Query: 75 QCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C + ++ G + W +G +
Sbjct: 138 TCLVVGFNPGDISVEWTSNGHTEENYKDTAP 168
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain,
structural protein; 2.80A {Dictyostelium discoideum}
SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Length = 311
Score = 28.1 bits (61), Expect = 1.2
Identities = 9/102 (8%), Positives = 24/102 (23%), Gaps = 5/102 (4%)
Query: 20 AIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEIT 79
+ AE + + + + ++ P + V+ V + +
Sbjct: 118 VFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDA---KVTDNNDGTYGVVYD 174
Query: 80 PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC 121
G Y + G I + + +
Sbjct: 175 APVEGNYNVNVTLRGNPIKN--MPIDVKCIEGANGEDSSFGS 214
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens}
PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A
3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L
3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Length = 216
Score = 27.6 bits (62), Expect = 1.3
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT------AEVRLQVSTPYRVDVNPPLLSVHLD-GS 71
L I G+ D Y C + + E++ V+ P V + PP L G+
Sbjct: 74 LGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAP-SVFIFPP-SDEQLKSGT 131
Query: 72 ANFQCEITPYDSGPYLIAWFKDGRQIPG--RTSSTS 105
A+ C + + + W D G + S T
Sbjct: 132 ASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE 167
Score = 26.8 bits (60), Expect = 2.2
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 34/108 (31%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRT------------------- 101
PP +S C + + G ++W+ +Q+PG
Sbjct: 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWY---QQLPGTAPKLLIYDNNKRPSGIPDRF 63
Query: 102 ------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGTR 143
+S +L I + D Y C S + G GGT+
Sbjct: 64 SGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFG------GGTK 105
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 27.2 bits (60), Expect = 1.3
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 63 LLSVH--LDGSANFQCEITPYDSGPYLIAWFK-------DGRQIPGR---TSSTSLVINP 110
LL VH + G I + G GR + SL+I
Sbjct: 19 LLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQN 78
Query: 111 VGREDRGIYQCIARRSDGDVAQGSAELQ 138
+ + D G Y +SD + + + +
Sbjct: 79 IIQNDAGFYTLHVIKSDLVNEEATGQFR 106
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 1 MEPLLVLPGPRTRVLGPILAIEGVTAE 27
++ L L + P LAI+ T E
Sbjct: 25 LQASLKLYADDS---APALAIKA-TME 47
Score = 26.1 bits (56), Expect = 4.5
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 8/22 (36%)
Query: 68 LDGSANFQCEITPY--DSGPYL 87
L S + Y DS P L
Sbjct: 25 LQAS------LKLYADDSAPAL 40
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 27.6 bits (62), Expect = 1.5
Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 14/85 (16%)
Query: 19 LAIEGVTAEDSGTYRCSSSN-----IGGEATAEVRLQVSTPYRVDVNPP----LLSVHLD 69
L I + ED TY C S G E++ V+ P V + PP L S
Sbjct: 96 LTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAP-SVFIFPPSDEQLKS---- 150
Query: 70 GSANFQCEITPYDSGPYLIAWFKDG 94
G+A+ C + + + W D
Sbjct: 151 GTASVVCLLNNFYPREAKVQWKVDN 175
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 27.7 bits (62), Expect = 1.5
Identities = 28/152 (18%), Positives = 44/152 (28%), Gaps = 51/152 (33%)
Query: 24 VTAEDSGTYRCSS--------------------SNIGGEATAEVRLQVSTPYRVDVNPPL 63
+T+ED+ Y C+ S+ GG + + + +P +
Sbjct: 112 LTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAI 171
Query: 64 LSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGR----------------------- 100
+S C + S + WF +Q PG
Sbjct: 172 MSASPGEKVTITCSAS---SSVSYMHWF---QQKPGTSPKLWIYSTSNLASGVPARFSGS 225
Query: 101 TSST--SLVINPVGREDRGIYQCIARRSDGDV 130
S T SL I+ + ED Y C R S
Sbjct: 226 GSGTSYSLTISRMEAEDAATYYCQQRSSYPLT 257
Score = 26.2 bits (58), Expect = 4.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I + AED+ TY C +
Sbjct: 233 LTISRMEAEDAATYYCQQRS 252
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 26.9 bits (59), Expect = 1.6
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIY 119
P ++ G A+F CE +P + + + RQ + + +
Sbjct: 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVL---RQTNDQMTEVCATTFTEKNTVGFLD 62
Query: 120 QCIARRSDGDVAQGSAELQLGGTR 143
G + L + G R
Sbjct: 63 Y---PFCSGTFNESRVNLTIQGLR 83
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 27.3 bits (61), Expect = 1.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG 41
L I + D G+Y C+ +G
Sbjct: 77 LKILAPSERDEGSYYCACDTLGM 99
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 27.0 bits (59), Expect = 1.9
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIY 119
P ++ G A+F CE + + + Q + + +G E +
Sbjct: 8 PAVVLASSRGIASFVCEYASPGKATEVRVTVLR---QADSQVTEVCAATYMMGNELTFLD 64
Query: 120 QCIARRSDGDVAQGSAELQLGGTR 143
G + L + G R
Sbjct: 65 D---SICTGTSSGNQVNLTIQGLR 85
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 113
Score = 26.6 bits (59), Expect = 2.0
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
+ GP +E ++G S G + L+ + + + DG
Sbjct: 13 KVVASGP--GLEHGKVGEAGLLSVDCSEAGP---GALGLEAVSDSGTKA-EVSIQNNKDG 66
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ + P +G Y + G +P
Sbjct: 67 T--YAVTYVPLTAGMYTLTMKYGGELVPH 93
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 124
Score = 26.7 bits (59), Expect = 2.0
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
+ GP +A V + + + G +V V TP D V +
Sbjct: 13 KCLATGPGIA-STVKTGEEVGFVVDAKTAGK---GKVTCTVLTP---DGTEAEADVIENE 65
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ T G Y+I G IP
Sbjct: 66 DGTYDIFYTAAKPGTYVIYVRFGGVDIPN 94
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10
Length = 111
Score = 26.3 bits (58), Expect = 2.1
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ L V P + ++ + DG+ P G Y I D + IPG
Sbjct: 42 GGLSLAVEGPSKAEITC---KDNKDGT--CTVSYLPTAPGDYSIIVRFDDKHIPG 91
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 26.8 bits (59), Expect = 2.2
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 50 QVSTPYRVDVNPPLLSV--HLDGSANFQCEITPYDSGPYLIAWFKDGR-QIPG--RTSST 104
S P D + + G+ ++ + + R + G +T +
Sbjct: 29 SFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNC 88
Query: 105 SLVINPVGREDRGIYQCIARR 125
+L I D G Y +
Sbjct: 89 TLSIRDARMSDAGRYFFRMEK 109
Score = 26.1 bits (57), Expect = 3.3
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAE---VRLQV 51
L+I D+G Y + + + + V
Sbjct: 90 LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation,
immun like, cytoskeleton, actin-binding, cell junction,
shape; HET: CME; 2.44A {Homo sapiens}
Length = 100
Score = 26.2 bits (58), Expect = 2.5
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 16/76 (21%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDS 83
V +G E T E+ + P V + H DG+ P
Sbjct: 31 VDCSSAG---------SAELTIEICSEAGLPAEVYIQD-----HGDGT--HTITYIPLCP 74
Query: 84 GPYLIAWFKDGRQIPG 99
G Y + G+ +P
Sbjct: 75 GAYTVTIKYGGQPVPN 90
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 26.3 bits (58), Expect = 2.6
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSST 104
+ L V P +VD+ DG+ + P G Y+++ +PG S
Sbjct: 42 GGISLAVEGPSKVDIQ---TEDLEDGT--CKVSYFPTVPGVYIVSTKFADEHVPG--SPF 94
Query: 105 SLVINPVGREDRGI 118
++ I+ GR G
Sbjct: 95 TVKISGEGRVKSGP 108
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 26.3 bits (58), Expect = 2.7
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 26/86 (30%)
Query: 61 PPLLSVHLDGSANFQCEITPYDSGPYLIAWFK----------------------DGR-QI 97
P L+V +A F C ++ + L W + D R QI
Sbjct: 16 PAWLTVSEGANATFTCSLSNWSEDLML-NWNRLSPSNQTEKQAAFSNGLSQPVQDARFQI 74
Query: 98 PGRTSST--SLVINPVGREDRGIYQC 121
+ + I R D GIY C
Sbjct: 75 IQLPNRHDFHMNILDTRRNDSGIYLC 100
Score = 25.1 bits (55), Expect = 6.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEAT 44
+ I DSG Y C + ++ +A
Sbjct: 85 MNILDTRRNDSGIYLCGAISLHPKAK 110
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 131
Score = 26.4 bits (58), Expect = 2.7
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 41 GEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
G T + L V P + +G P G Y + + IPG
Sbjct: 58 GAGTGGLGLTVEGPCEAKI-----ECSDNGDGTCSVSYLPTKPGEYFVNILFEEVHIPG 111
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 26.8 bits (58), Expect = 2.9
Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 69 DGSANFQCEITPYDSGPY-LIAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIY 119
A FQC L D R P R S + + D G Y
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238
Query: 120 QCIARRSDGDVAQGSAEL 137
+C+ R G AEL
Sbjct: 239 RCMIRTEGGVGISNYAEL 256
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 26.5 bits (58), Expect = 3.5
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEA----TAEVRLQVSTPYRVDVNPPLLSVHLDGSANF 74
L V DS Y C+ S G + +L VS P + +P + + S++
Sbjct: 84 LRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVS-PNIQNPDPAVYQLRDSKSSDK 142
Query: 75 Q-CEITPYDSGPYLIAWFKDGRQIPGRTSSTS 105
C T +DS + I +
Sbjct: 143 SVCLFTDFDSQTNVSQSKDSDVYITDKCVLDM 174
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 26.5 bits (57), Expect = 3.6
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 11 RTRVLGPILAIEGVTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDG 70
R RV G + + + + + G + L + P +VD+N
Sbjct: 8 RVRVSGQ--GLHEGHTFEPAEFIIDTRDAGY---GGLSLSIEGPSKVDIN-----TEDLE 57
Query: 71 SANFQCEITPYDSGPYLIAWFKDGRQIPGR 100
+ P + G Y+I + +PG
Sbjct: 58 DGTCRVTYCPTEPGNYIINIKFADQHVPGS 87
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 25.9 bits (57), Expect = 4.0
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 24 VTAEDSGTYRCSSSNIGGEATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDS 83
+ +D+ G +V + V V + + TP +
Sbjct: 34 LLCKDAAGEIMGR----GGDNVQVAVVPKDKKDSPVRT---MVQDNKDGTYYISYTPKEP 86
Query: 84 GPYLIAWFKDGRQIPG 99
G Y + + + G
Sbjct: 87 GVYTVWVCIKEQHVQG 102
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 26.2 bits (58), Expect = 4.0
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I + ED TY C N
Sbjct: 211 LTISSLQPEDVATYFCYQYN 230
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell
adhesion, cell junction, cell shape, cytoplasm,
cytoskeleton; NMR {Homo sapiens}
Length = 119
Score = 25.6 bits (56), Expect = 4.1
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ + V P + ++ + + + G Y ++ + IP
Sbjct: 49 GGLSIAVEGPSKAEI-----AFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPD 98
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 26.2 bits (58), Expect = 4.3
Identities = 7/20 (35%), Positives = 7/20 (35%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I V ED Y C
Sbjct: 222 LTITRVEPEDFALYYCQVYG 241
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 26.2 bits (58), Expect = 4.7
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 31/98 (31%)
Query: 61 PPLLSVHLDGSANFQC---EITPYDSGPYLIAWFKDGRQIPGRT---------------- 101
P L V L A+ C + + +G + W+ Q PG++
Sbjct: 22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWY---LQKPGQSPKVLIYKVSNRVSGVP 78
Query: 102 ---------SSTSLVINPVGREDRGIYQCIARRSDGDV 130
+ +L IN V ED G+Y C
Sbjct: 79 DRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWT 116
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 25.8 bits (56), Expect = 5.1
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 45 AEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
+ L + P +VD+N + P + G Y+I + +PG
Sbjct: 128 GGLSLSIEGPSKVDIN-----TEDLEDGTCRVTYCPTEPGNYIINIKFADQHVPG 177
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV,
immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 25.8 bits (57), Expect = 5.5
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L I V AED Y C +
Sbjct: 83 LTIGSVKAEDLAVYYCQQYS 102
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system;
2.35A {Mus musculus} PDB: 2e7l_C
Length = 121
Score = 25.2 bits (56), Expect = 5.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L +E T + Y C+S
Sbjct: 76 LTLESATPSQTSVYFCASGG 95
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 25.8 bits (56), Expect = 6.0
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 57 VDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR 116
V+P + + GS C + I +++ ++ V ++
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNR-KVYELSNVQED 60
Query: 117 GIYQCIAR 124
C +
Sbjct: 61 SQPMCYSN 68
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 25.3 bits (56), Expect = 6.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 19 LAIEGVTAEDSGTYRC 34
++I +T D+GTY C
Sbjct: 81 ISISNITPADAGTYYC 96
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.1.18.10 PDB: 2eeb_A
Length = 112
Score = 25.2 bits (55), Expect = 6.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 43 ATAEVRLQVSTPYRVDVNPPLLSVHLDGSANFQCEITPYDSGPYLIAWFKDGRQIPG 99
A + +V TP +S P+++G + I +G IPG
Sbjct: 39 ARGVIDARVHTPSGAVE-ECYVSELDSDK--HTIRFIPHENGVHSIDVKFNGAHIPG 92
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 25.2 bits (56), Expect = 7.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 19 LAIEGVTAEDSGTYRCSSSN 38
L +E T + Y C+S
Sbjct: 81 LILELATPSQTSVYFCASGG 100
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex,
immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Length = 115
Score = 24.8 bits (55), Expect = 7.3
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGGEATAEV 47
L+I + ED Y C + E V
Sbjct: 78 LSISNIQPEDEAIYICGVGDTIKEQFVYV 106
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 24.9 bits (55), Expect = 7.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 19 LAIEGVTAEDSGTYRCSS 36
L + E+ G Y CS+
Sbjct: 79 LTLSDFRRENEGYYFCSA 96
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 25.0 bits (55), Expect = 7.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 19 LAIEGVTAEDSGTYRC 34
++I +T D+GTY C
Sbjct: 76 ISISNITPADAGTYYC 91
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1
PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A*
4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Length = 146
Score = 25.1 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 82 DSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED 115
SG + FKD +++ + L I+P GR D
Sbjct: 8 GSGAFPPGHFKDPKRLYCKNGGFFLRIHPDGRVD 41
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 25.3 bits (56), Expect = 8.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 19 LAIEGVTAEDSGTYRCSSSNIGG 41
L I V +D TY C+
Sbjct: 82 LTIHNVEKQDIATYYCALWEAQQ 104
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 25.3 bits (56), Expect = 9.8
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 83 SGPYLIAWFKDGRQ--IPGR-TSSTS-----LVINPVGREDRGIYQCIARRSDGDV 130
P + + R IP R + S S L I+ + ED +Y C R +
Sbjct: 176 QAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPT 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.408
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,273,066
Number of extensions: 126230
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1113
Number of HSP's successfully gapped: 775
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)