BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11132
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 8 VPPKLSP-TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
V P++ P E VG+ +L CS+ GD+PL I W DG+ + ++ + V +
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG 676
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
S+L I++V A H+GN++C RN+ L V VPP+ P D +G+ +V
Sbjct: 677 SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRW--ILEPTDKAFAQGSDAKV 734
Query: 126 ICGVTHGDPPLTIRWLK 142
C G P + W K
Sbjct: 735 ECK-ADGFPKPQVTWKK 750
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 85/209 (40%), Gaps = 23/209 (11%)
Query: 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY--NSMLVIDSVS 75
++ + GE + C + I +I W +D R AL I + N L+I++V
Sbjct: 535 KKAIVAGETLIVTCPVAGYPID-SIVWERDNR------ALPINRKQKVFPNGTLIIENVE 587
Query: 76 ARHS--GNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG 132
R+S Y+C +N + + V V P+I FAF G + C V G
Sbjct: 588 -RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGG 646
Query: 133 DPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYS 192
D PL I W DG+ +S A+H+G +TC A N A +++
Sbjct: 647 DLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT 706
Query: 193 SKLQVKGNLNRLPPSYTL-----VFSQAS 216
+ L V +PP + L F+Q S
Sbjct: 707 TPLNV-----YVPPRWILEPTDKAFAQGS 730
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 71/193 (36%), Gaps = 23/193 (11%)
Query: 28 SLICSITKGDIPLTIKWLK--DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT 85
+L+C +P+ +W K +G + L+ V Q + L+I SG Y C
Sbjct: 267 ALLCPAQGYPVPV-FRWYKFIEGTTRKQAVVLN-DRVKQVSGTLIIKDAVVEDSGKYLCV 324
Query: 86 VRNMVAEDTQVQRLIVNVP--PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 143
V N V ++ L V P KI+ P + G C T G+P T+ W+KD
Sbjct: 325 VNNSVGGESVETVLTVTAPLSAKIDP---PTQTVDFGRPAVFTCQYT-GNPIKTVSWMKD 380
Query: 144 GKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR 203
GK + G Y C N A S++L++ G +
Sbjct: 381 GKAIG-----------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD- 428
Query: 204 LPPSYTLVFSQAS 216
PP F + +
Sbjct: 429 -PPVIRQAFQEET 440
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG 80
L +GE + C +T G P+ I W KD R + +T V+ ++ V+ V+ +G
Sbjct: 17 LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL-KVTKGDAG 74
Query: 81 NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW 140
Y+C N+ +D+ +L V PP+ P + + TR C + G P + + W
Sbjct: 75 QYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLW 133
Query: 141 LKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
KD + S +F SG+YTC A N A A S+ L+VK
Sbjct: 134 YKDETEIQESSKF---RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 6/177 (3%)
Query: 9 PPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP+ + P R + E C I G + + W KD + S+ ++ V+ +
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVESV-A 155
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
+L + ++S SG+Y+C N + L V PP P + L +GA + C
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL-KGADVHLEC 214
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASN 184
+ G PP + W KD + L +A GEY C ASN
Sbjct: 215 EL-QGTPPFQVSWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 8 VPP--KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
VPP L P + + L +GE + C +T G P+ I W KD R + +T V+
Sbjct: 196 VPPFFDLKPVSVD--LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENT 252
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
++ V+ V+ +G Y+C N+ +D+ +L V PP+ P + + TR
Sbjct: 253 ATLTVL-KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 311
Query: 126 ICGVTHGDPPLTIRWLKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 183
C + G P + + W KD + S +F SG+YTC A
Sbjct: 312 ECKIG-GSPEIKVLWYKDETEIQESSKF---RMSFVESVAVLEMYNLSVEDSGDYTCEAH 367
Query: 184 NTAAQARYSSKLQVK 198
N A A S+ L+VK
Sbjct: 368 NAAGSASSSTSLKVK 382
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 11/213 (5%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
+++ +PP + + +G + C I G PL + W KDG L + A L +
Sbjct: 93 LVIKERKLPPSFARKLKDVHETLGFPVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTS 151
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGL 117
+ ++ ++ + H G Y+C+ N + + +L ++ VPP + D L
Sbjct: 152 FIHNVATLQILQT-DQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD-L 209
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGE 177
G C VT G P+ I W KD + + P +G+
Sbjct: 210 ALGESGTFKCHVT-GTAPIKITWAKDNREIRPG-GNYKMTLVENTATLTVLKVTKGDAGQ 267
Query: 178 YTCVASNTAAQARYSSKLQVKGN---LNRLPPS 207
YTC ASN A + S++L V+ + +L PS
Sbjct: 268 YTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPS 300
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 6/177 (3%)
Query: 9 PPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP+ + P R + E C I G + + W KD + S+ ++ V+ +
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVESV-A 347
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
+L + ++S SG+Y+C N + L V PP P + L +GA + C
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL-KGADVHLEC 406
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASN 184
+ G PP + W KD + L +A GEY C ASN
Sbjct: 407 EL-QGTPPFQVSWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEYQCKASN 461
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 22/197 (11%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
+GE +L C + G + I W K+ L ++ A + + S LVI+ V G Y
Sbjct: 19 IGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS-LVINKVDHSDVGEY 76
Query: 83 SCTVRNMVAEDTQVQRLIV---NVPPKIESFAFPFD------GLPEGARTRVICGVTHGD 133
+C N V L++ +PP SFA G P R+ +G
Sbjct: 77 TCKAENSVGAVASSAVLVIKERKLPP---SFARKLKDVHETLGFPVAFECRI-----NGS 128
Query: 134 PPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
PL + W KDG+ L +H G+Y C ASN A S+
Sbjct: 129 EPLQVSWYKDGELLKDD-ANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSA 187
Query: 194 KLQVKGNLNRLPPSYTL 210
KL + + + +PP + L
Sbjct: 188 KLTL--SEHEVPPFFDL 202
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 66/183 (36%), Gaps = 7/183 (3%)
Query: 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS 75
+P TL G L C + +G P + W KD R L + I + S+ +++ V
Sbjct: 392 HPVETLK-GADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILN-VD 448
Query: 76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT-HGDP 134
+ G Y C N V DT V + + PP+ F + V T G
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLKAPPR---FVKKLSDISTVVGEEVQLQATIEGAE 505
Query: 135 PLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSK 194
P+++ W KD + A++G+YTC N A +
Sbjct: 506 PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT 565
Query: 195 LQV 197
L V
Sbjct: 566 LSV 568
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSG 80
L +GE + C +T G P+ I W KD R + +T V+ ++ V+ V+ +G
Sbjct: 17 LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL-KVTKGDAG 74
Query: 81 NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW 140
Y+C N+ +D+ +L V PP+ P + + TR C + G P + + W
Sbjct: 75 QYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLW 133
Query: 141 LKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
KD + S +F SG+YTC A N A A S+ L+VK
Sbjct: 134 YKDETEIQESSKF---RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK 190
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 6/177 (3%)
Query: 9 PPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP+ + P R + E C I G + + W KD + S+ ++ V+ +
Sbjct: 98 PPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVESV-A 155
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
+L + ++S SG+Y+C N + L V PP P + L +GA + C
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETL-KGADVHLEC 214
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASN 184
+ G PP + W KD + L +A GEY C ASN
Sbjct: 215 EL-QGTPPFQVSWHKDKRELRSG-KKYKIMSENFLTSIHILNVDSADIGEYQCKASN 269
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
VGER + G P IKW K+G L+++ + HV L I VS R +GNY
Sbjct: 214 VGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTIKAGHV------LTIMEVSERDTGNY 266
Query: 83 SCTVRNMVAEDTQ--VQRLIVNVPPKI--ESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
+ + N ++++ Q V L+V VPP+I +S P D G + C V PP I
Sbjct: 267 TVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 326
Query: 139 RW 140
W
Sbjct: 327 HW 328
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 21 LNVGERASLICSI-TKGDIPLTIKW-----LKDGRYLDNS--AALSITHVDQYNSMLVID 72
L+VGE+ L C+ T+ ++ + W + L N S + + ++ S L ID
Sbjct: 106 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 165
Query: 73 SVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE---GARTRVICGV 129
V+ G Y+C + + + V+ P + +F + L E G R R+
Sbjct: 166 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV-AFGSGMESLVEATVGERVRIPAKY 224
Query: 130 THGDPPLTIRWLKDGKPL 147
G PP I+W K+G PL
Sbjct: 225 L-GYPPPEIKWYKNGIPL 241
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 10/198 (5%)
Query: 4 IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
IF + K +PT E GE A ++C + +P TI W GR D + +
Sbjct: 97 IFQKLMFKNAPTPQE--FKEGEDAVIVCDVVSS-LPPTIIWKHKGR--DVILKKDVRFIV 151
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAFPFDGLPE-G 120
N+ L I + G Y C R + + + ++IVNVPP +++ + G
Sbjct: 152 LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLG 211
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAH-SGEYT 179
++C G P T+ W KDG+P+ + EY
Sbjct: 212 QSVTLVCD-ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270
Query: 180 CVASNTAAQARYSSKLQV 197
C+A N A + S L+V
Sbjct: 271 CIAENKAGEQDASIHLKV 288
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
VGER + G P IKW K+G L+++ + HV L I VS R +GNY
Sbjct: 344 VGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTIKAGHV------LTIMEVSERDTGNY 396
Query: 83 SCTVRNMVAEDTQ--VQRLIVNVPPKI--ESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
+ + N ++++ Q V L+V VPP+I +S P D G + C V PP I
Sbjct: 397 TVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHI 456
Query: 139 RW 140
W
Sbjct: 457 HW 458
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 21 LNVGERASLICSI-TKGDIPLTIKW-----LKDGRYLDNS--AALSITHVDQYNSMLVID 72
L+VGE+ L C+ T+ ++ + W + L N S + + ++ S L ID
Sbjct: 236 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 295
Query: 73 SVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE---GARTRVICGV 129
V+ G Y+C + + + V+ P + +F + L E G R R+
Sbjct: 296 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV-AFGSGMESLVEATVGERVRIPAKY 354
Query: 130 THGDPPLTIRWLKDGKPL 147
G PP I+W K+G PL
Sbjct: 355 L-GYPPPEIKWYKNGIPL 371
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 23/121 (19%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
L + V P ++ +T ++GE + C+ + G+ P I W KD
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKD-------------- 703
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV---QRLIVNVPPKIESFAFPFDGLP 118
N LV DS GN + T+R + ED + Q V K+E+F F +G
Sbjct: 704 ----NETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF-FIIEGAQ 758
Query: 119 E 119
E
Sbjct: 759 E 759
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 70/177 (39%), Gaps = 17/177 (9%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
VG++ +L C +P IKW R +D S + T + L I SVS G Y
Sbjct: 220 VGQQVTLECFAFGNPVP-RIKW----RKVDGSLSPQWTTAE---PTLQIPSVSFEDEGTY 271
Query: 83 SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE-GARTRVICGVTHGDPPLTIRWL 141
C N DT R+IV P E D + G+ R C G P T+RWL
Sbjct: 272 ECEAENSKGRDTVQGRIIVQAQP--EWLKVISDTEADIGSNLRWGCAAA-GKPRPTVRWL 328
Query: 142 KDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
++G+PL+ + SG Y CVA N S++L V+
Sbjct: 329 RNGEPLASQ-----NRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 9/176 (5%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNY 82
G AS +C T G+ I W+K G+ + + I D S+L I + R Y
Sbjct: 21 GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 79
Query: 83 SCTVRNMVAEDTQVQRLIV----NVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLT 137
CT N + E +L V +PP S P + E ART + G+P
Sbjct: 80 ECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPE 139
Query: 138 IRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
I W KD P+ P + G+Y CVA+N+A RYS+
Sbjct: 140 ISWFKDFLPVDPAT-SNGRIKQLRSGALQIESSEESDQGKYECVATNSAG-TRYSA 193
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 80/202 (39%), Gaps = 14/202 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP+ + T ++T G AS IC T GD I W K G+ + N I D S+
Sbjct: 6 PPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSV 64
Query: 69 LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
L I + + R Y C N V E + RL V +I FP D P E
Sbjct: 65 LRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPR-GFPTIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYT 179
RT + G+P I W KD P+ S + G+Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 180 CVASNTAAQARYS--SKLQVKG 199
CVA+N+A RYS + L V+G
Sbjct: 184 CVATNSAG-TRYSAPANLYVRG 204
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 11/210 (5%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP+ ++ G AS +C T GD + W K G+ +++ +I + ++
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 69 LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
L I + + R Y C +N V E T +L V ++ S FP D P E
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 181
RT + G+P I W KD P+ P G+Y CV
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSA-SNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 182 ASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
A+N+A RYSS + + + P ++++
Sbjct: 183 ATNSAG-VRYSSPANLYVRVQNVAPRFSIL 211
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 25/182 (13%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
G+ +L C +P IKW R LD S + +L I +V G Y
Sbjct: 221 TGQMVTLECFAFGNPVP-QIKW----RKLDGSQTSKWLSSE---PLLHIQNVDFEDEGTY 272
Query: 83 SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPE-----GARTRVICGVTHGDPPLT 137
C N+ DT R+I++ P D + + G+ R C V G P
Sbjct: 273 ECEAENIKGRDTYQGRIIIHAQPDW------LDVITDTEADIGSDLRWSC-VASGKPRPA 325
Query: 138 IRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
+RWL+DG+PL+ + SG Y CVA N S++L V
Sbjct: 326 VRWLRDGQPLASQ-----NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
Query: 198 KG 199
+
Sbjct: 381 QA 382
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP+ ++ G AS +C T GD + W K G+ +++ +I + ++
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 69 LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
L I + + R Y C +N V E T +L V ++ S FP D P E
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 181
RT + G+P I W KD P+ P G+Y CV
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSA-SNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 182 ASNTAAQARYSS 193
A+N+A RYSS
Sbjct: 183 ATNSAG-VRYSS 193
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP+ ++ G AS +C T GD + W K G+ +++ +I + ++
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 69 LVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGA 121
L I + + R Y C +N V E T +L V ++ S FP D P E
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS-GFPNIDMGPQLKVVERT 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCV 181
RT + G+P I W KD P+ P G+Y CV
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPS-ASNGRIKQLRSGALQIESSEETDQGKYECV 182
Query: 182 ASNTAAQARYSS 193
A+N+A RYSS
Sbjct: 183 ATNSAG-VRYSS 193
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 69/177 (38%), Gaps = 11/177 (6%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNY 82
G AS +C T G+ I W+K G+ + + I D S+L I + R Y
Sbjct: 22 GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 83 SCTVRNMVAEDTQVQRLIVNVPPKIESFAFP-FDGLP-----EGARTRVICGVTHGDPPL 136
CT N + E +L V ++ S FP D P E RT + G+P
Sbjct: 81 ECTATNSLGEINTSAKLSVLEEDQLPS-GFPTIDMGPQLKVVEKGRTATMLCAAGGNPDP 139
Query: 137 TIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
I W KD P+ P + G+Y CVA+N+A RYS+
Sbjct: 140 EISWFKDFLPVDP-AASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG-TRYSA 194
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPXXXXXXXXXXXXXXXXXXXAAHSGEY 178
G +C T G+P I W+K GK +S RF Y
Sbjct: 22 GGVASFVCQAT-GEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIY 80
Query: 179 TCVASNTAAQARYSSKLQV 197
C A+N+ + S+KL V
Sbjct: 81 ECTATNSLGEINTSAKLSV 99
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 9/176 (5%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-SARHSGNY 82
G AS +C T GD + W K G+ +++ +I + ++L I + + R Y
Sbjct: 21 GGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIY 79
Query: 83 SCTVRNMVAEDTQVQRLIV----NVPPKIESFAF-PFDGLPEGARTRVICGVTHGDPPLT 137
C +N E T +L V +PP + P + E RT + G+P
Sbjct: 80 ECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPE 139
Query: 138 IRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSS 193
I W KD P+ P G+Y CVASN+A RYSS
Sbjct: 140 ITWFKDFLPVDPST-SNGRIKQLRSGGLQIESSEETDQGKYECVASNSAG-VRYSS 193
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-IDSVSARHSGN 81
+G + C +G +PL +W K L +S + + + + S ++ + + S+ +SG
Sbjct: 15 IGSDFKIKCEPKEGSLPLQYEWQK----LSDSQKMPTSWLAEMTSSVISVKNASSEYSGT 70
Query: 82 YSCTVRNMVAEDTQVQRLIVNVPP 105
YSCTVRN V D + RL V VPP
Sbjct: 71 YSCTVRNRVGSDQCLLRLNV-VPP 93
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG----------RYLDNSAAL 57
VPP N + +G RA L CS G P W KDG R NS+ +
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
++ LV D +SA +G YSC RN
Sbjct: 166 ----LNPTTGELVFDPLSASDTGEYSCEARN 192
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDT-----QVQ-RLIVNVPPKIESFAFPFDGLPEGAR 122
+ SV+ +G Y+C MV+E+ +V+ +LIV VPP + P G R
Sbjct: 70 ITFKSVTREDTGTYTC----MVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT-IGNR 124
Query: 123 TRVICGVTHGDPPLTIRWLKDG--KPLSPR----FPXXXXXXXXXXXXXXXXXXXAAHSG 176
+ C G PP W KDG P +P+ F A+ +G
Sbjct: 125 AVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG 184
Query: 177 EYTCVASN 184
EY+C A N
Sbjct: 185 EYSCEARN 192
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T++WLK+G+ + V +++DSV GNY+C V N +L
Sbjct: 47 TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLD 106
Query: 100 IVNVPPK--IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFP 152
+V P I P + + G+ +C V + DP I+WLK +G + P
Sbjct: 107 VVERSPHRPILQAGLPANKTVALGSNVEFMCKV-YSDPQPHIQWLKHIEVNGSKIGPDNL 165
Query: 153 XXXXXXXXXXXXXXXXXXXAAH--------SGEYTCVASNTAAQARYSSKLQV 197
H +GEYTC+A N+ + +S+ L V
Sbjct: 166 PYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 108 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXX 167
E +P + C + G P T+RWLK+GK P
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCPSS-GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 168 XXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
+ G YTC+ N ++ +L V
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T++WLK+G+ + V +++DSV GNY+C V N +L
Sbjct: 47 TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLD 106
Query: 100 IVNVPPK--IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFP 152
+V P I P + + G+ +C V + DP I+WLK +G + P
Sbjct: 107 VVERSPHRPILQAGLPANKTVALGSNVEFMCKV-YSDPQPHIQWLKHIEVNGSKIGPDNL 165
Query: 153 XXXXXXXXXXXXXXXXXXXAAH--------SGEYTCVASNTAAQARYSSKLQV 197
H +GEYTC+A N+ + +S+ L V
Sbjct: 166 PYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 218
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 108 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXX 167
E +P + C + G P T+RWLK+GK P
Sbjct: 19 EKMEKKLHAVPAAKTVKFKCPSS-GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIM 77
Query: 168 XXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
+ G YTC+ N ++ +L V
Sbjct: 78 DSVVPSDKGNYTCIVENEYGSINHTYQLDV 107
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T++WLK+G+ + V +++DSV GNY+C V N +L
Sbjct: 48 TLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLD 107
Query: 100 IVNVPPK--IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFP 152
+V P I P + + G+ +C V + DP I+WLK +G + P
Sbjct: 108 VVERSPHRPILQAGLPANKTVALGSNVEFMCKV-YSDPQPHIQWLKHIEVNGSKIGPDNL 166
Query: 153 XXXXXXXXXXXXXXXXXXXAAH--------SGEYTCVASNTAAQARYSSKLQV 197
H +GEYTC+A N+ + +S+ L V
Sbjct: 167 PYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLTV 219
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 90 VAEDTQVQRLIV----NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 145
+A++T+ R+ V P K+E +P + C + G P T+RWLK+GK
Sbjct: 1 MADNTKPNRMPVAPYWTSPEKMEK---KLHAVPAAKTVKFKCP-SSGTPQPTLRWLKNGK 56
Query: 146 PLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
P + G YTC+ N ++ +L V
Sbjct: 57 EFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDV 108
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-IDSVSARHSG 80
+G L C +G +PL +W K L +S + + + S ++ + + S+ +SG
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQK----LSDSQTMPTPWLAEMTSPVISVKNASSEYSG 189
Query: 81 NYSCTVRNMVAEDTQVQRLIVNVPP 105
YSCTV+N V D + RL V VPP
Sbjct: 190 TYSCTVQNRVGSDQCMLRLDV-VPP 213
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-IDSVSARHSGN 81
+G L C +G +PL +W K L +S + + + S ++ + + S+ +SG
Sbjct: 137 IGNDFKLKCEPKEGSLPLQFEWQK----LSDSQTMPTPWLAEMTSPVISVKNASSEYSGT 192
Query: 82 YSCTVRNMVAEDTQVQRLIVNVPP 105
YSCTV+N V D + RL V VPP
Sbjct: 193 YSCTVQNRVGSDQCMLRLDV-VPP 215
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALS------ITHVDQYNSMLVIDSVSAR 77
GE A L C KG T+ W+KDG LD+ A+S + VD N L+I +V
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPI 180
Query: 78 HSGNYSCTVRNMVA-EDTQVQRLIVNV 103
GNY C +N+V ++ +LIV V
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIVQV 207
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 25 ERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-----IDSVSARHS 79
E A+L C + +G TI+W KDG + + S H Q+ + + +
Sbjct: 25 EPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRTMQGKKEQDG 81
Query: 80 GNYSCTVRNMVAE--------DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
G Y C +N V + V R V PK A +G + CG
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA-------KGETALLECGPPK 134
Query: 132 GDPPLTIRWLKDGKPL 147
G P T+ W+KDG PL
Sbjct: 135 GIPEPTLIWIKDGVPL 150
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALS------ITHVDQYNSMLVIDSVSAR 77
GE A L C KG T+ W+KDG LD+ A+S + VD N L+I +V
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPI 180
Query: 78 HSGNYSCTVRNMVA-EDTQVQRLIVNV 103
GNY C +N+V ++ +LIV V
Sbjct: 181 DEGNYKCIAQNLVGTRESSYAKLIVQV 207
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 25 ERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV-----IDSVSARHS 79
E A+L C + +G TI+W KDG + + S H Q+ + + +
Sbjct: 25 EPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKS--HRVQFKDGALFFYRTMQGKKEQDG 81
Query: 80 GNYSCTVRNMVAE--------DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
G Y C +N V + V R V PK A +G + CG
Sbjct: 82 GEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA-------KGETALLECGPPK 134
Query: 132 GDPPLTIRWLKDGKPL 147
G P T+ W+KDG PL
Sbjct: 135 GIPEPTLIWIKDGVPL 150
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 90/217 (41%), Gaps = 30/217 (13%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
PP++ + + VG AS C+ +GD P +I W K+G+ + + + T ++Q
Sbjct: 8 PPEIIRKPQNQGVRVGGVASFYCA-ARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGI 65
Query: 67 SMLVIDSVSA-RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
S+L I+ V A R Y C N V + + FP + +G TRV
Sbjct: 66 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPV--ITQGPGTRV 123
Query: 126 ICGVTH---------GDPPLTIRWLKDGKPL---SPRFPXXXXXXXXXXXXXXXXXXXAA 173
I V H G+P I W+K+ + +PR+
Sbjct: 124 I-EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-------SLKDGFLQIENSREE 175
Query: 174 HSGEYTCVASNT-AAQARYSSKLQVKGNLNRLPPSYT 209
G+Y CVA N+ + ++ L VK + R+PP+++
Sbjct: 176 DQGKYECVAENSMGTEHSKATNLYVK--VRRVPPTFS 210
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 75/198 (37%), Gaps = 23/198 (11%)
Query: 6 STVPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLK--DGRYLDNSAALSITH 61
+V PK++P + + ++V SL+C P + +W K +G + L+
Sbjct: 210 GSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTP-SFRWYKFIEGTTRKQAVVLN-DR 267
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP--PKIESFAFPFDGLPE 119
V Q + L+I SG Y C V N V ++ L V P KI+ P +
Sbjct: 268 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP---PTQTVDF 324
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYT 179
G C T G+P T+ W+KDGK + G Y
Sbjct: 325 GRPAVFTCQYT-GNPIKTVSWMKDGKAIG-----------HSESVLRIESVKKEDKGMYQ 372
Query: 180 CVASNTAAQARYSSKLQV 197
C N A S++L++
Sbjct: 373 CFVRNDRESAEASAELKL 390
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
+L + + + K+ P P +T++ G A C T G+ T+ W+KDG+ + +S
Sbjct: 304 VLTVTAPLSAKIDP--PTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGKAIGHS------ 354
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRN 88
S+L I+SV G Y C VRN
Sbjct: 355 -----ESVLRIESVKKEDKGMYQCFVRN 377
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRL--PPSYTLVFSQASYMSTSYYS--FEQDSW 230
SG+Y CV +N+ + L V L+ PP+ T+ F + + + Y + SW
Sbjct: 285 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 344
Query: 231 MIDNE 235
M D +
Sbjct: 345 MKDGK 349
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+ GE A C T G+ T+ WL+ G+ L SA +T +Y S I SV A
Sbjct: 19 TVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQVT-TTKYKSTFEISSVQASDE 76
Query: 80 GNYSCTVRN 88
GNYS V N
Sbjct: 77 GNYSVVVEN 85
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 19 RTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
R++ V GE A C T G+ T+ WL+ G+ L SA +T +Y S I SV A
Sbjct: 22 RSMTVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQVT-TTKYKSTFEISSVQA 79
Query: 77 RHSGNYSCTVRN 88
GNYS V N
Sbjct: 80 SDEGNYSVVVEN 91
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 20/179 (11%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 44 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Query: 95 QVQRLIVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWL----KDG 144
L +V + GLP A T V +C V + D I+W+ K+G
Sbjct: 104 HTYHL--DVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNG 160
Query: 145 KPLSP------RFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
P + A +GEY C SN QA S+ L V
Sbjct: 161 SKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
+L + + + K+ P P +T++ G A C T I T+ W+KDG+ + +S
Sbjct: 307 VLTVTAPLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS------ 357
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRN 88
S+L I+SV G Y C VRN
Sbjct: 358 -----ESVLRIESVKKEDKGMYQCFVRN 380
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 65/181 (35%), Gaps = 21/181 (11%)
Query: 21 LNVGERASLICSITKGDIPLTIKWLK--DGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
L V SL+C P + +W K +G + L+ V Q + L+I
Sbjct: 230 LMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLN-DRVKQVSGTLIIKDAVVED 287
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVP--PKIESFAFPFDGLPEGARTRVICGVTHGDPPL 136
SG Y C V N V ++ L V P KI+ P + G C T G+P
Sbjct: 288 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP---PTQTVDFGRPAVFTCQYT-GNPIK 343
Query: 137 TIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQ 196
T+ W+KDGK + G Y C N A S++L+
Sbjct: 344 TVSWMKDGKAIG-----------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 392
Query: 197 V 197
+
Sbjct: 393 L 393
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRL--PPSYTLVFSQASYMSTSYYS--FEQDSW 230
SG+Y CV +N+ + L V L+ PP+ T+ F + + + Y + SW
Sbjct: 288 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 347
Query: 231 MIDNE 235
M D +
Sbjct: 348 MKDGK 352
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
+L + + + K+ P P +T++ G A C T I T+ W+KDG+ + +S
Sbjct: 301 VLTVTAPLSAKIDP--PTQTVDFGRPAVFTCQYTGNPIK-TVSWMKDGKAIGHS------ 351
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRN 88
S+L I+SV G Y C VRN
Sbjct: 352 -----ESVLRIESVKKEDKGMYQCFVRN 374
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 65/181 (35%), Gaps = 21/181 (11%)
Query: 21 LNVGERASLICSITKGDIPLTIKWLK--DGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
L V SL+C P + +W K +G + L+ V Q + L+I
Sbjct: 224 LMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLN-DRVKQVSGTLIIKDAVVED 281
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVP--PKIESFAFPFDGLPEGARTRVICGVTHGDPPL 136
SG Y C V N V ++ L V P KI+ P + G C T G+P
Sbjct: 282 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP---PTQTVDFGRPAVFTCQYT-GNPIK 337
Query: 137 TIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQ 196
T+ W+KDGK + G Y C N A S++L+
Sbjct: 338 TVSWMKDGKAIG-----------HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Query: 197 V 197
+
Sbjct: 387 L 387
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRL--PPSYTLVFSQASYMSTSYYS--FEQDSW 230
SG+Y CV +N+ + L V L+ PP+ T+ F + + + Y + SW
Sbjct: 282 SGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSW 341
Query: 231 MIDNE 235
M D +
Sbjct: 342 MKDGK 346
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 66/180 (36%), Gaps = 22/180 (12%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 44 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 103
Query: 95 QVQRL-IVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWL----KD 143
L +V P GLP A T V +C V + D I+W+ K+
Sbjct: 104 HTYHLDVVERSPHRPILQ---AGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKN 159
Query: 144 GKPLSP------RFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
G P + A +GEY C SN QA S+ L V
Sbjct: 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 219
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 12/108 (11%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAAL-------SIT 60
VPP + ++ +G RA L CS G P W KDG + + A S
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRN-----MVAEDTQVQRLIVNV 103
+D + L+ D V+A SG Y C +N M +E + + +NV
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 210
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQ-RLIVNVPPKIESFAFPFDGLPEGART 123
+S + SV+ + +G Y+C V ++ +V L V VPP + + P + G R
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRA 122
Query: 124 RVICGVTHGDPPLTIRWLKDG 144
+ C G PP W KDG
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDG 143
>pdb|2E6P|A Chain A, Solution Structure Of The Ig-Like Domain (714-804) From
Human Obscurin-Like Protein 1
Length = 104
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T ER L C +++ D P T W KDG+ ++ S L + +D L++ + S
Sbjct: 21 TFTTSERVVLTCELSRVDFPAT--WYKDGQKVEESELL-VVKMDGRKHRLILPEAKVQDS 77
Query: 80 GNYSCTVRNMVA 91
G + C + A
Sbjct: 78 GEFECRTEGVSA 89
>pdb|2EO1|A Chain A, Solution Structure Of The Ig Domain Of Human Obscn
Protein
Length = 102
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
V K P + E G A+L C + + +T W KDG+ L +S+ + + V
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEVAQAQTEVT--WYKDGKKLSSSSKVRVEAVG-CTR 66
Query: 68 MLVIDSVSARHSGNYSC 84
LV+ +G YSC
Sbjct: 67 RLVVQQAGQAEAGEYSC 83
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 36 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 95
Query: 95 QVQRLIVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWLK------ 142
L +V + GLP A T V +C V + D I+W+K
Sbjct: 96 HTYHL--DVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNG 152
Query: 143 -----DGKP-LSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQ 196
DG P L +GEYTC+A N+ + +S+ L
Sbjct: 153 SKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 212
Query: 197 V 197
V
Sbjct: 213 V 213
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 68/181 (37%), Gaps = 22/181 (12%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 34 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 93
Query: 95 QVQRLIVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWLK------ 142
L +V + GLP A T V +C V + D I+W+K
Sbjct: 94 HTYHL--DVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNG 150
Query: 143 -----DGKP-LSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQ 196
DG P L +GEYTC+A N+ + +S+ L
Sbjct: 151 SKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 210
Query: 197 V 197
V
Sbjct: 211 V 211
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 65/175 (37%), Gaps = 21/175 (12%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100
T++WLK+G+ + V + L+++SV GNY+C V N L
Sbjct: 42 TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL- 100
Query: 101 VNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWLK-----------D 143
+V + GLP A T V +C V + D I+W+K D
Sbjct: 101 -DVVERWPHRPILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPD 158
Query: 144 GKP-LSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
G P L +GEYTC+A N+ + +S+ L V
Sbjct: 159 GLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T+RWLK+GK + G YTCV N +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 192 SSKLQV 197
+ L V
Sbjct: 97 TYHLDV 102
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 23/176 (13%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T++WLK+G+ + V + L+++SV GNY+C V N L
Sbjct: 42 TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 101
Query: 100 IVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWLK----------- 142
+V P GLP A T V +C V + D I+W+K
Sbjct: 102 VVERSPHRPILQ---AGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGP 157
Query: 143 DGKP-LSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
DG P L +GEYTC+A N+ + +S+ L V
Sbjct: 158 DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T+RWLK+GK + G YTCV N +
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 192 SSKLQV 197
+ L V
Sbjct: 97 TYHLDV 102
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 23/176 (13%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T++WLK+G+ + V + L+++SV GNY+C V N L
Sbjct: 41 TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 100
Query: 100 IVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWLK----------- 142
+V P GLP A T V +C V + D I+W+K
Sbjct: 101 VVERSPHRPILQ---AGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGP 156
Query: 143 DGKP-LSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
DG P L +GEYTC+A N+ + +S+ L V
Sbjct: 157 DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 212
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T+RWLK+GK + G YTCV N +
Sbjct: 36 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 192 SSKLQV 197
+ L V
Sbjct: 96 TYHLDV 101
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 61/174 (35%), Gaps = 21/174 (12%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T +WLK+G+ + V + L+ +SV GNY+C V N L
Sbjct: 49 TXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLD 108
Query: 100 IVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWL----KDGKPLSP 149
+V P GLP A T V +C V + D I+W+ K+G P
Sbjct: 109 VVERSPHRPILQA---GLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGP 164
Query: 150 ------RFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
+ A +GEY C SN QA S+ L V
Sbjct: 165 DGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTV 218
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T RWLK+GK + G YTCV N +
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 103
Query: 192 SSKLQV 197
+ L V
Sbjct: 104 TYHLDV 109
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 76/192 (39%), Gaps = 27/192 (14%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
PP++ + + VG AS C+ +GD P +I W K+G+ + + + T ++Q
Sbjct: 6 PPEIIRKPQNQGVRVGGVASFYCA-ARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPGGI 63
Query: 67 SMLVIDSVSA-RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
S+L I+ V A R Y C N V + + FP + +G TRV
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPV--ITQGPGTRV 121
Query: 126 ICGVTH---------GDPPLTIRWLKDGKPL---SPRFPXXXXXXXXXXXXXXXXXXXAA 173
I V H G+P I W+K+ + +PR+
Sbjct: 122 I-EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-------SLKDGFLQIENSREE 173
Query: 174 HSGEYTCVASNT 185
G+Y CVA N+
Sbjct: 174 DQGKYECVAENS 185
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 39/100 (39%)
Query: 98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXX 157
++IVNVPP + + + +++ + G P T+ W KDG+P+
Sbjct: 5 QVIVNVPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYS 64
Query: 158 XXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
+ EY C+A N A + + L+V
Sbjct: 65 FNYDGSELIIKKVDKSDEAEYICIAENKAGEQDATIHLKV 104
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 29 LICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
L+ I G I W K G L + A + +N L I +VS SG Y C N
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKA----KFENFNKALRITNVSEEDSGEYFCLASN 296
Query: 89 MVAEDTQVQRLIVNVPPKIESFAFPFDG-----LPEGARTRVICGVTHGDPPLTIRWLKD 143
+ R ++V ++++ + D L G R++C +G+P T++W+ +
Sbjct: 297 KMGS----IRHTISV--RVKAAPYWLDEPKNLILAPGEDGRLVCRA-NGNPKPTVQWMVN 349
Query: 144 GKPL 147
G+PL
Sbjct: 350 GEPL 353
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQ 188
+ G P I W K G L P SGEY C+ASN
Sbjct: 245 IASGVPTPDIAWYKKGGDL----PSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 189 ARYSSKLQVKG 199
R++ ++VK
Sbjct: 301 IRHTISVRVKA 311
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 20/191 (10%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH--VDQYN 66
PP++ + ++ GE A+L C P TI+W K G ++ +H +
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSG 67
Query: 67 SMLVIDSVSARHS----GNYSCTVRNMVAE----DTQVQRLIVNVPPKIESFAFPFDGLP 118
S+ + V R S G Y C RN + E D ++ I+ + + P D +
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL----RDDFRQNPSDVMV 123
Query: 119 EGARTRVI-CGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGE 177
V+ C G P TI W KDG PL + + +G+
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK----DERITIRGGKLMITYTRKSDAGK 179
Query: 178 YTCVASNTAAQ 188
Y CV +N +
Sbjct: 180 YVCVGTNMVGE 190
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
VGE A + C +G TI W KDG LD+ + L+I +G Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKD----ERITIRGGKLMITYTRKSDAGKY 180
Query: 83 SCTVRNMVAE-DTQVQRLIV 101
C NMV E +++V L V
Sbjct: 181 VCVGTNMVGERESEVAELTV 200
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ-YNSMLVIDSVSARH 78
T++ G+ L CS+ + P I+W+KDG + N L I +Q + L + SV
Sbjct: 13 TVSQGQPVKLNCSVEGXEEP-DIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF-PFD-GLPEGARTRVICGVTHGDPPL 136
+G Y C V + +T++ + + + F P D +P A ++ C P+
Sbjct: 72 AGRYWCQVED--GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPV 129
Query: 137 TIRWLK 142
TI W +
Sbjct: 130 TIVWWR 135
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+ E+A C ++ D +T KW K+G + S ++I+HV +++ LVID V
Sbjct: 19 TVKAAEQAVFKCEVS--DEKVTGKWYKNGVEVRPSKRITISHVGRFHK-LVIDDVRPEDE 75
Query: 80 GNYS 83
G+Y+
Sbjct: 76 GDYT 79
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 61/175 (34%), Gaps = 21/175 (12%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100
+I WLK+GR + + LV++SV GNY+C V N Q L
Sbjct: 154 SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL- 212
Query: 101 VNVPPKIESFAFPFDGLPE------GARTRVICGVTHGDPPLTIRWLK-----------D 143
+V + GLP G+ C V + D I+WLK D
Sbjct: 213 -DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPD 270
Query: 144 GKPLSPRFPXXXXXXXXXXXXXXXXXXXA-AHSGEYTCVASNTAAQARYSSKLQV 197
G P +GEYTC+A N+ + +S+ L V
Sbjct: 271 GTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVV 325
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 23/176 (13%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL- 99
T +WLK+G+ + V + L+ +SV GNY+C V N L
Sbjct: 42 TXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINHTYHLD 101
Query: 100 IVNVPPKIESFAFPFDGLPEGARTRV------ICGVTHGDPPLTIRWLK----------- 142
+V P GLP A T V +C V + D I+W+K
Sbjct: 102 VVERSPHRPILQ---AGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGP 157
Query: 143 DGKP-LSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQV 197
DG P L +GEYTC+A N+ + +S+ L V
Sbjct: 158 DGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 213
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T RWLK+GK + G YTCV N +
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 96
Query: 192 SSKLQV 197
+ L V
Sbjct: 97 TYHLDV 102
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
G +C I D + W R L+NS IT+ D ++L + ++ G Y
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGV-AILYVKDITKLDDGTYR 74
Query: 84 CTVRNMVAEDTQVQRLIVN 102
C V N ED+ L V
Sbjct: 75 CKVVNDYGEDSSYAELFVK 93
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 57/176 (32%), Gaps = 20/176 (11%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100
+I WLK+GR + + LV++SV GNY+C V N Q L
Sbjct: 46 SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL- 104
Query: 101 VNVPPKIESFAFPFDGLPE------GARTRVICGVTHGDPPLTIRWLK-----------D 143
+V + GLP G+ C V + D I+WLK D
Sbjct: 105 -DVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPD 162
Query: 144 GKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVKG 199
G P GEY C A+N A + L V G
Sbjct: 163 GTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 69/185 (37%), Gaps = 32/185 (17%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLD-NSAALSITHVDQYNSMLVIDSVSARHSGNY 82
G+ A L C ++ G P + WL+ + S S+ S L+I +V+ SG Y
Sbjct: 236 GKDAVLECCVS-GYPPPSFTWLRGEEVIQLRSKKYSLLG----GSNLLISNVTDDDSGTY 290
Query: 83 SCTVRNMVAEDTQVQRLIVNVPP----------KIESFAFPFDGLPEGARTRVICGVTHG 132
+C V + L V VPP ES F+ C V+ G
Sbjct: 291 TCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFE-----------CAVS-G 338
Query: 133 DPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYS 192
P T+ W+K+G + P + G Y CVA N A A+ S
Sbjct: 339 KPVPTVNWMKNGDVVIP----SDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSS 394
Query: 193 SKLQV 197
++L V
Sbjct: 395 AQLIV 399
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQY---NSMLVIDSVSARH----SGNYSC--TVRNMVA 91
IKW KDG L AL + Q S+L+ + + +RH G Y C ++ + +
Sbjct: 53 VIKWKKDGLIL----ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGS 108
Query: 92 EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF 151
++ +++V P + S G + C V GDP TI W K+ + L+P
Sbjct: 109 IISRTAKVMVAGPLRFLSQTESITAF-MGDTVLLKCEVI-GDPMPTIHWQKNQQDLNP-I 165
Query: 152 PXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVK 198
P SG Y C A N A+ R ++ +V+
Sbjct: 166 PGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAS-TRTGNEAEVR 211
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 73/181 (40%), Gaps = 8/181 (4%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHSGN 81
G A+ I+ +P + W +DG+ + S + I+ D + L I +V+ +SG
Sbjct: 20 GSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDG-RAKLTIPAVTKANSGR 77
Query: 82 YSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP--EGARTRVICGVTHGDPPLTIR 139
YS N + T L+V +F + +G++ R+ VT G P ++
Sbjct: 78 YSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVT-GIPTPVVK 136
Query: 140 WLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQVKG 199
+ +DG + SG Y+ A+N+ +A +++L V+G
Sbjct: 137 FYRDGAEIQSSL-DFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQG 195
Query: 200 N 200
Sbjct: 196 E 196
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 132 GDPPLTIRWLKDGKPLSPR-FPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQAR 190
G P + W +DG+ +S P A+SG Y+ A+N + QA
Sbjct: 31 GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 191 YSSKLQVKGNLNRLPPSY 208
+++L VK PP++
Sbjct: 91 STAELLVKAET--APPNF 106
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP L+ E GE A ++CS + D+ + +L+ S H ++Y +
Sbjct: 186 PPALTLVPAELVRIRGEAAQIVCSASSVDVNFDV-FLQHNNTKLAIPQQSDFHNNRYQKV 244
Query: 69 LVI--DSVSARHSGNYSCTVRNM 89
L + D V +H+GNYSC N+
Sbjct: 245 LTLNLDQVDFQHAGNYSCVASNV 267
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEY 178
EG R+ C V+ G P + W DGKP+ P + +G Y
Sbjct: 23 EGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIY 81
Query: 179 TCVASNTAAQARYSSKLQV 197
TC+A+N A Q +S +L V
Sbjct: 82 TCIATNRAGQNSFSLELVV 100
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+ G+ + C ++ P + W DG+ + +A + + L+I+ V++R +
Sbjct: 20 TVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 80 GNYSCTVRNMVAEDTQVQRLIV 101
G Y+C N +++ L+V
Sbjct: 79 GIYTCIATNRAGQNSFSLELVV 100
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
GE L C +++ P + WLKD + + S + + +MLVI S + +G Y+
Sbjct: 23 GEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVV-CEGTMAMLVIRGASLKDAGEYT 79
Query: 84 CTVR 87
C V
Sbjct: 80 CEVE 83
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 33 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 86
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T+RWLK+GK + G YTCV N +
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 192 SSKLQV 197
+ L V
Sbjct: 94 TYHLDV 99
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
V E S+ + DI I+WL + + L + ++++ Q NS+L ID + +G Y
Sbjct: 122 VKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEY 178
Query: 83 SCTVRNMVA 91
C + N V+
Sbjct: 179 QCEISNPVS 187
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 38 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 91
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T+RWLK+GK + G YTCV N +
Sbjct: 39 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 98
Query: 192 SSKLQV 197
+ L V
Sbjct: 99 TYHLDV 104
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
V E S+ + DI I+WL + + L + ++++ Q NS+L ID + +G Y
Sbjct: 122 VKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEY 178
Query: 83 SCTVRNMVA 91
C + N V+
Sbjct: 179 QCEISNPVS 187
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 36 GDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
G P+ T++WLK+G+ + V + L+++SV GNY+C V N
Sbjct: 37 GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVEN 90
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 23/66 (34%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T+RWLK+GK + G YTCV N +
Sbjct: 38 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 97
Query: 192 SSKLQV 197
+ L V
Sbjct: 98 TYHLDV 103
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+ G+ +L C++ GD P + WLK+ + L + ++ + I+ VS S
Sbjct: 128 TIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVP 104
G Y V+N +T + V +P
Sbjct: 187 GKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSG 176
+ EG + C V GDPP + WLK+ K L+ A SG
Sbjct: 129 IQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 177 EYTCVASN 184
+Y V N
Sbjct: 188 KYGLVVKN 195
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSA--ALSITHVDQYNSMLVIDSVSARHSGN 81
G A+ I+ +P + W +DG+ + S + I+ D + L I +V+ +SG
Sbjct: 20 GSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDG-RAKLTIPAVTKANSGR 77
Query: 82 YSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP--EGARTRVICGVTHGDPPLTIR 139
YS N + T L+V +F + +G++ R+ VT G P ++
Sbjct: 78 YSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVT-GIPTPVVK 136
Query: 140 WLKDGKPL 147
+ +DG +
Sbjct: 137 FYRDGAEI 144
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 132 GDPPLTIRWLKDGKPLSPR-FPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQAR 190
G P + W +DG+ +S P A+SG Y+ A+N + QA
Sbjct: 31 GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQAT 90
Query: 191 YSSKLQVKGNLNRLPPSY 208
+++L VK PP++
Sbjct: 91 STAELLVKAET--APPNF 106
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 70/196 (35%), Gaps = 23/196 (11%)
Query: 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-----HVDQYNSMLVI 71
PE + G+ L+C D P R+L N + IT V Q N L I
Sbjct: 16 PEVRVKEGKGMVLLC-----DPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP-PKIESFAFPFDGLPEGARTRVICG-- 128
+V A GNYSC V + + + I +P P+ + +P D + + + G
Sbjct: 71 ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN 130
Query: 129 -----VTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 183
G+P IRW K +P+ G Y C A
Sbjct: 131 VTLECFALGNPVPDIRWRKVLEPMP-----STAEISTSGAVLKIFNIQLEDEGIYECEAE 185
Query: 184 NTAAQARYSSKLQVKG 199
N + ++ +++ V+
Sbjct: 186 NIRGKDKHQARIYVQA 201
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 62/181 (34%), Gaps = 18/181 (9%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSAR-----H 78
GE A ++C ++ P + WL N +I+ D +ML +++
Sbjct: 17 GEDAEVVCRVSSSPAP-AVSWL-----YHNEEVTTIS--DNRFAMLANNNLQILNINKSD 68
Query: 79 SGNYSCTVRNMVAEDTQVQRLIV--NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL 136
G Y C R + + +IV NVPP I F+ E G P
Sbjct: 69 EGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 128
Query: 137 TIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQ 196
I W ++GK + + G Y C A+N A + + LQ
Sbjct: 129 AISWFRNGKLIEEN---EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Query: 197 V 197
V
Sbjct: 186 V 186
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+ G+ +L C++ GD P + WLK+ + L + ++ + I+ VS S
Sbjct: 233 TIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVP 104
G Y V+N +T + V +P
Sbjct: 292 GKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSG 176
+ EG + C V GDPP + WLK+ K L+ A SG
Sbjct: 234 IQEGKALNLTCNV-WGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSG 292
Query: 177 EYTCVASN 184
+Y V N
Sbjct: 293 KYGLVVKN 300
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 62/181 (34%), Gaps = 18/181 (9%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSAR-----H 78
GE A ++C ++ P + WL N +I+ D +ML +++
Sbjct: 113 GEDAEVVCRVSSSPAP-AVSWL-----YHNEEVTTIS--DNRFAMLANNNLQILNINKSD 164
Query: 79 SGNYSCTVRNMVAEDTQVQRLIV--NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL 136
G Y C R + + +IV NVPP I F+ E G P
Sbjct: 165 EGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP 224
Query: 137 TIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARYSSKLQ 196
I W ++GK + + G Y C A+N A + + LQ
Sbjct: 225 AISWFRNGKLIEEN---EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Query: 197 V 197
V
Sbjct: 282 V 282
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 11/130 (8%)
Query: 17 PERTLNV----GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
P+++ N GE + C + P I W ++G+ ++ + + N+ L +
Sbjct: 8 PQKSFNATAERGEEMTFSCRASGSPEP-AISWFRNGKLIEENEKYILKG---SNTELTVR 63
Query: 73 SVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG 132
++ G Y C N ED + L V V P I + E + ++C G
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHI--IQLKNETTYENGQVTLVCDA-EG 120
Query: 133 DPPLTIRWLK 142
+P I W +
Sbjct: 121 EPIPEITWKR 130
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 23/121 (19%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
L + V P ++ +T ++GE + C+ + G+ P I W KD
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKD-------------- 47
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV---QRLIVNVPPKIESFAFPFDGLP 118
N LV DS GN + T+R + ED + Q V K+E+F F +G
Sbjct: 48 ----NETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF-FIIEGAQ 102
Query: 119 E 119
E
Sbjct: 103 E 103
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
V P + T + + G A C + P + W KD + S I + ++ N
Sbjct: 40 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L I V Y+C N + E T L+V
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEY 178
EG+ R C V G P + W KD P+ +Y
Sbjct: 55 EGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 113
Query: 179 TCVASNTAAQARYSSKLQVK 198
TC A N+ +A +++L V+
Sbjct: 114 TCKAVNSLGEATCTAELLVE 133
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 64/185 (34%), Gaps = 24/185 (12%)
Query: 24 GERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYNSMLVIDSVSARHSGN 81
G+ L+C L+ W+ + Y DN +S Q L I V GN
Sbjct: 116 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS-----QETGNLYIAKVEKSDVGN 170
Query: 82 YSCTVRNMVAEDTQV----------QRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
Y+C V N V + ++ PKIE FP E T +
Sbjct: 171 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE-VQFPETVPAEKGTTVKLECFAL 229
Query: 132 GDPPLTIRWLK-DGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQAR 190
G+P TI W + DGKP++ + +G Y CVA N+ +
Sbjct: 230 GNPVPTILWRRADGKPIARK-----ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 284
Query: 191 YSSKL 195
+L
Sbjct: 285 AKGQL 289
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 17/197 (8%)
Query: 4 IFSTVPPKLSPTNPERT-LNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITH 61
+ PK+ PE G L C +P TI W + DG+ + A
Sbjct: 198 VMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP-TILWRRADGKPIARKA-----R 251
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGA 121
+ N +L I + +G+Y C N ++ +L P ++ + +
Sbjct: 252 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP---NWVQIINDIHVAM 308
Query: 122 RTRVICGV-THGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTC 180
V +G P T RWLK+G PL R + +G Y C
Sbjct: 309 EESVFWECKANGRPKPTYRWLKNGDPLLTR-----DRIQIEQGTLNITIVNLSDAGMYQC 363
Query: 181 VASNTAAQARYSSKLQV 197
VA N S++L V
Sbjct: 364 VAENKHGVIFSSAELSV 380
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
V P + T + + G A C + P + W KD + S I + ++ N
Sbjct: 40 VKPYFTKTILDMDVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNC 98
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L I V Y+C N + E T L+V
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEY 178
EG+ R C V G P + W KD P+ +Y
Sbjct: 55 EGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 113
Query: 179 TCVASNTAAQARYSSKLQVK 198
TC A N+ +A +++L V+
Sbjct: 114 TCKAVNSLGEATCTAELLVE 133
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 64/185 (34%), Gaps = 24/185 (12%)
Query: 24 GERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYNSMLVIDSVSARHSGN 81
G+ L+C L+ W+ + Y DN +S Q L I V GN
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS-----QETGNLYIAKVEKSDVGN 171
Query: 82 YSCTVRNMVAEDTQV----------QRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
Y+C V N V + ++ PKIE FP E T +
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE-VQFPETVPAEKGTTVKLECFAL 230
Query: 132 GDPPLTIRWLK-DGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQAR 190
G+P TI W + DGKP++ + +G Y CVA N+ +
Sbjct: 231 GNPVPTILWRRADGKPIARK-----ARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNV 285
Query: 191 YSSKL 195
+L
Sbjct: 286 AKGQL 290
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 68/197 (34%), Gaps = 17/197 (8%)
Query: 4 IFSTVPPKLSPTNPERT-LNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITH 61
+ PK+ PE G L C +P TI W + DG+ + A
Sbjct: 199 VMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP-TILWRRADGKPIARKA-----R 252
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGA 121
+ N +L I + +G+Y C N ++ +L P ++ + +
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP---NWVQIINDIHVAM 309
Query: 122 RTRVICGV-THGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTC 180
V +G P T RWLK+G PL R + +G Y C
Sbjct: 310 EESVFWECKANGRPKPTYRWLKNGDPLLTR-----DRIQIEQGTLNITIVNLSDAGMYQC 364
Query: 181 VASNTAAQARYSSKLQV 197
VA N S++L V
Sbjct: 365 VAENKHGVIFSSAELSV 381
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 73/197 (37%), Gaps = 31/197 (15%)
Query: 15 TNPERTLN--VGERASLICSITKGDIPLTIKW--------LKDGRYLDNSAALSITHVDQ 64
T P T++ V E A+ +C++ P I W L D RY + +
Sbjct: 11 TTPLETVDALVEEVATFMCAVESYPQP-EISWTRNKILIKLFDTRY----------SIRE 59
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ-VQRLIVNVPPKIESFAFPFDGLPEGART 123
+L I SV G Y CT N V + L V + PKI + EG +
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK-IIEGLKA 118
Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 183
+ C T G+P ++ W+K L +G+Y CVA
Sbjct: 119 VLPC-TTMGNPKPSVSWIKGDSALREN----SRIAVLESGSLRIHNVQKEDAGQYRCVAK 173
Query: 184 NTAAQARYSS--KLQVK 198
N+ A YS KL+V+
Sbjct: 174 NSLGTA-YSKLVKLEVE 189
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 25 ERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
ER L C + + P ++W KDG + S AL + D LV+ +V SG Y
Sbjct: 29 ERVVLTCELCR---PWAEVRWTKDGEEVVESPALLLQKEDTVR-RLVLPAVQLEDSGEYL 84
Query: 84 CTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG 116
C + + A T + V PP ++ P G
Sbjct: 85 CEIDDESASFT----VTVTEPPVRIIYSGPSSG 113
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYN----SMLVIDSVSARHSGNYSCTVRNMVAEDT 94
TI W +DG+ L +S + +++ YN S L + S GNY+CT N + +++
Sbjct: 49 TISWFRDGQLLPSS---NYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES 103
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP + P + + VG+ L+C+ P +KW + L T+ ++ N
Sbjct: 11 PPSIHPGKSDLIVRVGDEIRLLCT-----DPGFVKWTFE--------ILDETNENKQNEW 57
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
+ + A ++G Y+CT ++ ++ V V P K+ G E + T V C
Sbjct: 58 -ITEKAEATNTGKYTCTNKHGLSNSIYV---FVRDPAKLFLVDRSLYG-KEDSDTLVRCP 112
Query: 129 VTHGDPPLTIRWLK--DGKPL 147
+T DP +T LK GKPL
Sbjct: 113 LT--DPEVTSYSLKGCQGKPL 131
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 175 SGEYTCVASNTAAQARYSSKLQV--KGNLNRLPPSYTLVF---SQASYMSTSYYSF---E 226
SG + C A+NT A ++ L+V KG +N P T VF + + Y +F E
Sbjct: 260 SGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE 319
Query: 227 QDSWMIDNENY 237
W+ N +
Sbjct: 320 HQQWIYMNRTF 330
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 147
L V PP++ S PE I V G+PP T+ WL +G+PL
Sbjct: 3 LTVYYPPRVVSLE-----EPELRLEHCIEFVVRGNPPPTLHWLHNGQPL 46
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 30.8 bits (68), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 19/129 (14%)
Query: 26 RASLICSITKGDIP-LTIKWLKDG-------RYLDNSAALSITHVDQYNSMLVIDSVSAR 77
+ +L+C IP +T K DG + LD + H +S L I V
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG---SSSLHIKDVKLS 73
Query: 78 HSGNYSCTVRNMVAEDTQVQRLIVNVPPKI---ESFAFPFDGLPEGARTRVICGVTHGDP 134
SG Y C + + + L + PK ++ + ++G P + C V +P
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP----INISCDVK-SNP 128
Query: 135 PLTIRWLKD 143
P +I W +D
Sbjct: 129 PASIHWRRD 137
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 44 WLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
W KDG+ + ++ D+ L I SG Y+CTV+N + +L +
Sbjct: 40 WTKDGKAITQGGKYKLSE-DKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
G+P T W KDGK ++ + + SG YTC N+A
Sbjct: 32 GEPRPTAIWTKDGKAIT-QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSS 90
Query: 192 SSKLQVK 198
S KL +K
Sbjct: 91 SCKLTIK 97
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQARY 191
GDP I WLK+G R P + +G YTCVA++++ + +
Sbjct: 34 GDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRI---SDTGTYTCVATSSSGETSW 90
Query: 192 SSKLQV 197
S+ L V
Sbjct: 91 SAVLDV 96
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 114 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR 150
F+G+P RV G+P I W KDGK +SP+
Sbjct: 20 FEGMPVTFTCRVA-----GNPKPKIYWFKDGKQISPK 51
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 22/141 (15%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP + P + + VG+ L+C+ P +KW + L T+ ++ N
Sbjct: 36 PPSIHPGKSDLIVRVGDEIRLLCT-----DPGFVKWTFE--------ILDETNENKQNEW 82
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
+ + A ++G Y+CT ++ ++ V V P K+ G E T V C
Sbjct: 83 -ITEKAEATNTGKYTCTNKHGLSNSIYV---FVRDPAKLFLVDRSLYG-KEDNDTLVRCP 137
Query: 129 VTHGDPPLTIRWLK--DGKPL 147
+T DP +T LK GKPL
Sbjct: 138 LT--DPEVTNYSLKGCQGKPL 156
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 175 SGEYTCVASNTAAQARYSSKLQV--KGNLNRLPPSYTLVF---SQASYMSTSYYSF---E 226
SG + C A+NT A ++ L+V KG +N P T VF + + Y +F E
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE 344
Query: 227 QDSWMIDNENY 237
W+ N +
Sbjct: 345 HQQWIYMNRTF 355
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 19/129 (14%)
Query: 26 RASLICSITKGDIP-LTIKWLKDG-------RYLDNSAALSITHVDQYNSMLVIDSVSAR 77
+ +L+C IP +T K DG + LD + H +S L I V
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG---SSSLHIKDVKLS 73
Query: 78 HSGNYSCTVRNMVAEDTQVQRLIVNVPPKI---ESFAFPFDGLPEGARTRVICGVTHGDP 134
SG Y C + + + L + PK ++ + ++G P + C V +P
Sbjct: 74 DSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNP----INISCDVK-SNP 128
Query: 135 PLTIRWLKD 143
P +I W +D
Sbjct: 129 PASIHWRRD 137
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 24 GERASLICSITKGDIPLTIKW--LKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN 81
G + IC+ T+ W L +G+ + +N +L I +V +G
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM--------DFNGILTIRNVQPSDAGT 76
Query: 82 YSCTVRNMVAEDTQVQRLIVNV 103
Y CT NM A D L V V
Sbjct: 77 YVCTGSNMFAMDQGTATLHVQV 98
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 114 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR 150
F+G+P RV G+P I W KDGK +SP+
Sbjct: 21 FEGMPVTFTCRVA-----GNPKPKIYWFKDGKQISPK 52
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 27/71 (38%)
Query: 130 THGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVASNTAAQA 189
G+P + WL++ +P+ P +G YTC A N
Sbjct: 29 VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGAR 88
Query: 190 RYSSKLQVKGN 200
+ ++L+V+G
Sbjct: 89 QCEARLEVRGE 99
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 66 NSMLVIDSVSARHSGNYSCTV---------RNMVAEDTQVQRLIVNVP-PKIESFAFPFD 115
N +VI ++ G Y C V R +AE T + + P P I F P
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK--ADFPTPSISDFEIPTS 121
Query: 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 148
+ R+IC + G P + WL++G+ L+
Sbjct: 122 NI-----RRIICSTSGGFPEPHLSWLENGEELN 149
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 53/150 (35%), Gaps = 19/150 (12%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
LV+ PK P E LN G + +G P W R L N +
Sbjct: 384 LVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGP----WDSVARVLPNGS------ 433
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEG 120
L + +V + G + C N ++T+ R+ V P L G
Sbjct: 434 -------LFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAG 486
Query: 121 ARTRVICGVTHGD-PPLTIRWLKDGKPLSP 149
+V V+ G P T+ W DGKPL P
Sbjct: 487 VPNKVGTCVSEGSYPAGTLSWHLDGKPLVP 516
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 17/93 (18%)
Query: 66 NSMLVIDSVSARHSGNYSCTV---------RNMVAEDTQVQRLIVNVP-PKIESFAFPFD 115
N +VI ++ G Y C V R +AE T + + P P I F P
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVK--ADFPTPSISDFEIPTS 121
Query: 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 148
+ R+IC + G P + WL++G+ L+
Sbjct: 122 NI-----RRIICSTSGGFPEPHLSWLENGEELN 149
>pdb|2CRY|A Chain A, Solution Structure Of The Fifth Ig-Like Domain Of Human
Kin Of Irre Like 3
Length = 122
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-----LSITHVD 63
PP +S T + L+ GE+ + C I P I W L++ + +I+ +
Sbjct: 14 PPIISSTQTQHALH-GEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72
Query: 64 QYNSMLVIDS-VSARHSGNYSCTVRNMVAEDTQVQRL 99
S L I + V A Y+CT N DT++ RL
Sbjct: 73 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
>pdb|1N26|A Chain A, Crystal Structure Of The Extra-Cellular Domains Of Human
Interleukin-6 Receptor Alpha Chain
Length = 325
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM---LVIDSVSARHSG 80
G+ +L C + + T+ W+ L AA S H ++ M L++ SV SG
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWV-----LRKPAAGS--HPSRWAGMGRRLLLRSVQLHDSG 73
Query: 81 NYSCTVRNMVAEDTQVQRLIVNVPPK 106
NYSC A L+V+VPP+
Sbjct: 74 NYSCYRAGRPAGTVH---LLVDVPPE 96
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVA 182
T V+ V G P TI W KDG +S + +G YTC+A
Sbjct: 25 TFVLSCVATGSPVPTILWRKDGVLVSTQ---DSRIKQLENGVLQIRYAKLGDTGRYTCIA 81
Query: 183 SNTAAQARYSSKLQVK 198
S + +A +S+ ++V+
Sbjct: 82 STPSGEATWSAYIEVQ 97
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 18/132 (13%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
G SL C + P WL DG ++ L I+++ + NS L + SG+
Sbjct: 396 GVNLSLSCH-AASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSR 454
Query: 84 CTVRNMV--AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL 141
TV+ + AE + N P + A F PE T T W
Sbjct: 455 TTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNT-------------TYLWW 501
Query: 142 KDGK--PLSPRF 151
+G+ P+SPR
Sbjct: 502 VNGQSLPVSPRL 513
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 24/110 (21%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
V++ P +SP N + GE +L C + P W +G +
Sbjct: 199 VLYGPDAPTISPLN--TSYRSGENLNLSCH-AASNPPAQYSWFVNGTF------------ 243
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV------PPK 106
Q L I +++ +SG+Y+C N DT + R V PPK
Sbjct: 244 QQSTQELFIPNITVNNSGSYTCQAHN---SDTGLNRTTVTTITVYAEPPK 290
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM--------LVI 71
T +GE L C P ++W + + LS ++S+ L +
Sbjct: 6 TARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFL 65
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+V + G + C N ++T+ R+ V P L G +V V+
Sbjct: 66 PAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVS 125
Query: 131 HGD-PPLTIRWLKDGKPLSP 149
G P T+ W DGKPL P
Sbjct: 126 EGSYPAGTLSWHLDGKPLVP 145
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM--------LVI 71
T +GE L C P ++W + + LS ++S+ L +
Sbjct: 9 TARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFL 68
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+V + G + C N ++T+ R+ V P L G +V V+
Sbjct: 69 PAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVS 128
Query: 131 HGD-PPLTIRWLKDGKPLSP 149
G P T+ W DGKPL P
Sbjct: 129 EGSYPAGTLSWHLDGKPLVP 148
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 25/104 (24%)
Query: 42 IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC---------------TV 86
++W KD + L L H L++ +V+ +H GNY+C +
Sbjct: 143 LQWYKDCKPL----LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 198
Query: 87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ E+ + R ++ V P E+ G++ ++IC VT
Sbjct: 199 EFITLEENKPTRPVI-VSPANETMEVDL-----GSQIQLICNVT 236
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 25/104 (24%)
Query: 42 IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC---------------TV 86
++W KD + L L H L++ +V+ +H GNY+C +
Sbjct: 141 LQWYKDCKPL----LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Query: 87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ E+ + R ++ V P E+ G++ ++IC VT
Sbjct: 197 EFITLEENKPTRPVI-VSPANETMEVDL-----GSQIQLICNVT 234
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 25/104 (24%)
Query: 42 IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC---------------TV 86
++W KD + L L H L++ +V+ +H GNY+C +
Sbjct: 141 LQWYKDCKPL----LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 196
Query: 87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ E+ + R ++ V P E+ G++ ++IC VT
Sbjct: 197 EFITLEENKPTRPVI-VSPANETMEVDL-----GSQIQLICNVT 234
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 25/104 (24%)
Query: 42 IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC---------------TV 86
++W KD + L L H L++ +V+ +H GNY+C +
Sbjct: 138 LQWYKDCKPL----LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVI 193
Query: 87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ E+ + R ++ V P E+ G++ ++IC VT
Sbjct: 194 EFITLEENKPTRPVI-VSPANETMEVDL-----GSQIQLICNVT 231
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-- 74
P + L G ++ CS +G + W KDG+ + + ++ + + + + SV
Sbjct: 118 PNKDLRPGNMVTITCSSYQGYPEAEVFW-KDGQGVPLTGNVTTSQMANERGLFDVHSVLR 176
Query: 75 -SARHSGNYSCTVRNMVAE 92
+G YSC VRN V +
Sbjct: 177 VVLGANGTYSCLVRNPVLQ 195
>pdb|3DBX|A Chain A, Structure Of Chicken Cd1-2 With Bound Fatty Acid
Length = 289
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 29 LICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVD-------QYNSMLVIDSVSARHSG 80
L+C +T P+ + WL+DGR + S ALS V Q S L+ VS +
Sbjct: 207 LVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLL---VSPQDGH 263
Query: 81 NYSCTVRN 88
Y+C V++
Sbjct: 264 GYACRVQH 271
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 172 AAHSGEYTCVASNTAAQARYSSKLQV 197
A+ +G Y CVA N A +A ++ +L V
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLDV 96
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 25/161 (15%)
Query: 11 KLSPTNPERTLNV--GERASLICSITKGDIPLT-IKWL-------------KDGRYLDNS 54
+L P+++++V GE A L C++T IP+ I+W K+G + +
Sbjct: 3 ELQVIQPDKSVSVAAGESAILHCTVTSL-IPVGPIQWFRGAGPARELIYNQKEGHFPRVT 61
Query: 55 AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----RLIVNVPPKIES 109
T + + + I +++ +G Y C + DT+ + L V P
Sbjct: 62 TVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPV 121
Query: 110 FAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLS 148
+ P C +HG P +T++W K+G LS
Sbjct: 122 VSGPAARATPQHTVSFTCE-SHGFSPRDITLKWFKNGNELS 161
>pdb|3JVG|A Chain A, Crystal Structure Of Chicken Cd1-1
pdb|3JVG|B Chain B, Crystal Structure Of Chicken Cd1-1
Length = 281
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 29 LICSITKG-DIPLTIKWLKDGRYLDNSAALSITHV-------DQYNSMLVIDSVSARHSG 80
L+C +T P+ + WL+DGR + S ALS V Q S L+ VS +
Sbjct: 199 LVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLL---VSPQDGH 255
Query: 81 NYSCTVRN 88
Y+C V++
Sbjct: 256 GYACRVQH 263
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVI 71
++P PE LNV L CS G P+ + + + + A T ++S+L +
Sbjct: 3 VTPPGPELVLNVSSTFVLTCS---GSAPVVWERMSQEPPQEMAKAQDGT----FSSVLTL 55
Query: 72 DSVSARHSGNYSCTVRNMVAEDT-QVQRLIVNVPPKIESFAFPFDG------LPEGARTR 124
+++ +G Y CT + +T + +RL + VP F P D L E
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGF-LPNDAEELFIFLTEITEIT 114
Query: 125 VICGVTHGDPPLTI 138
+ C VT DP L +
Sbjct: 115 IPCRVT--DPQLVV 126
>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 269
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 207 SYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL 243
+Y + F + + Y+ QD W I+NE+Y+YC ++
Sbjct: 138 NYMIRFDLKDKENDTRYAIYQDFW-IENEDYLYCLHI 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,854,332
Number of Sequences: 62578
Number of extensions: 259067
Number of successful extensions: 1133
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 231
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)