Query psy11132
Match_columns 243
No_of_seqs 210 out of 1680
Neff 11.8
Searched_HMMs 46136
Date Fri Aug 16 18:49:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 7.4E-32 1.6E-36 218.4 21.9 225 2-239 324-561 (1051)
2 KOG3513|consensus 100.0 2E-29 4.2E-34 204.5 23.8 219 8-235 239-465 (1051)
3 KOG4194|consensus 100.0 3.1E-27 6.8E-32 180.4 16.6 230 8-239 502-750 (873)
4 KOG4221|consensus 99.9 8.7E-26 1.9E-30 183.6 21.6 231 3-242 134-374 (1381)
5 PHA02785 IL-beta-binding prote 99.9 1.3E-23 2.8E-28 157.7 20.0 204 19-237 36-264 (326)
6 KOG4194|consensus 99.9 6.4E-24 1.4E-28 162.5 14.6 188 2-198 605-796 (873)
7 PHA02826 IL-1 receptor-like pr 99.9 1.2E-22 2.7E-27 143.6 17.8 162 17-188 30-213 (227)
8 KOG4221|consensus 99.9 4.3E-22 9.4E-27 162.5 15.1 214 12-235 240-468 (1381)
9 KOG4222|consensus 99.9 5E-22 1.1E-26 161.2 13.9 221 4-237 125-356 (1281)
10 PHA02785 IL-beta-binding prote 99.9 2.7E-20 5.8E-25 139.8 21.1 175 9-190 121-319 (326)
11 KOG4222|consensus 99.9 9.2E-22 2E-26 159.7 13.9 217 8-237 30-266 (1281)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 8.4E-19 1.8E-23 108.4 11.8 96 10-107 1-96 (98)
13 cd05762 Ig8_MLCK Eighth immuno 99.8 2.6E-17 5.6E-22 101.8 11.0 85 115-201 10-94 (98)
14 cd05851 Ig3_Contactin-1 Third 99.7 1.6E-17 3.4E-22 100.8 9.3 87 9-101 1-87 (88)
15 cd05737 Ig_Myomesin_like_C C-t 99.7 9.8E-17 2.1E-21 98.4 10.6 85 16-101 8-92 (92)
16 cd05747 Ig5_Titin_like M5, fif 99.7 1.3E-16 2.8E-21 97.9 10.8 90 8-99 2-91 (92)
17 cd04975 Ig4_SCFR_like Fourth i 99.7 1.6E-16 3.5E-21 98.3 10.9 85 17-102 11-100 (101)
18 cd04975 Ig4_SCFR_like Fourth i 99.7 1.7E-16 3.6E-21 98.3 10.3 83 115-198 13-100 (101)
19 cd05737 Ig_Myomesin_like_C C-t 99.7 1.7E-16 3.6E-21 97.4 10.2 82 115-197 11-92 (92)
20 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2.8E-16 6E-21 94.8 10.7 81 116-197 6-86 (86)
21 PF07679 I-set: Immunoglobulin 99.7 1.5E-16 3.3E-21 97.5 9.4 90 10-101 1-90 (90)
22 cd05892 Ig_Myotilin_C C-termin 99.7 2.2E-16 4.8E-21 92.3 9.5 74 123-197 1-75 (75)
23 cd05851 Ig3_Contactin-1 Third 99.7 1.6E-16 3.5E-21 96.4 9.0 77 115-197 11-87 (88)
24 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 4.7E-16 1E-20 93.8 10.9 82 18-101 4-86 (86)
25 cd05865 Ig1_NCAM-1 First immun 99.7 4E-16 8.7E-21 95.8 10.4 87 14-101 5-95 (96)
26 cd05745 Ig3_Peroxidasin Third 99.7 2.2E-16 4.7E-21 92.8 8.8 74 119-197 1-74 (74)
27 cd05852 Ig5_Contactin-1 Fifth 99.7 3.4E-16 7.4E-21 91.2 8.7 73 120-197 1-73 (73)
28 cd05745 Ig3_Peroxidasin Third 99.7 3.8E-16 8.1E-21 91.7 8.8 74 23-101 1-74 (74)
29 cd05735 Ig8_DSCAM Eight immuno 99.7 1.8E-15 3.8E-20 91.8 11.8 82 24-106 1-86 (88)
30 cd05892 Ig_Myotilin_C C-termin 99.7 6.8E-16 1.5E-20 90.2 9.1 74 27-101 1-75 (75)
31 cd05859 Ig4_PDGFR-alpha Fourth 99.7 7E-16 1.5E-20 95.6 9.5 83 115-198 13-100 (101)
32 cd05857 Ig2_FGFR Second immuno 99.7 1.6E-15 3.5E-20 91.8 11.0 81 116-197 5-85 (85)
33 cd05865 Ig1_NCAM-1 First immun 99.7 1.4E-15 3E-20 93.4 10.7 82 115-197 10-95 (96)
34 cd04968 Ig3_Contactin_like Thi 99.7 1E-15 2.2E-20 93.2 9.7 87 9-101 1-87 (88)
35 cd05852 Ig5_Contactin-1 Fifth 99.7 7.6E-16 1.6E-20 89.7 8.6 73 24-101 1-73 (73)
36 cd05735 Ig8_DSCAM Eight immuno 99.7 3.5E-15 7.6E-20 90.4 11.8 79 120-199 1-83 (88)
37 cd05728 Ig4_Contactin-2-like F 99.7 1.2E-15 2.7E-20 92.0 9.7 83 13-101 3-85 (85)
38 cd05893 Ig_Palladin_C C-termin 99.7 1.1E-15 2.3E-20 89.5 9.1 74 123-197 1-75 (75)
39 cd05863 Ig2_VEGFR-3 Second imm 99.7 7.8E-16 1.7E-20 87.5 8.2 66 123-198 1-66 (67)
40 cd05853 Ig6_Contactin-4 Sixth 99.7 1.3E-15 2.8E-20 90.7 9.4 81 25-105 1-85 (85)
41 cd05891 Ig_M-protein_C C-termi 99.7 2.3E-15 5E-20 92.1 10.6 86 15-101 7-92 (92)
42 cd05744 Ig_Myotilin_C_like Imm 99.7 2.5E-15 5.4E-20 88.2 10.0 74 123-197 1-75 (75)
43 cd05730 Ig3_NCAM-1_like Third 99.7 2.5E-15 5.5E-20 92.9 10.5 91 9-103 1-94 (95)
44 cd05771 IgC_Tapasin_R Tapasin- 99.7 3.6E-15 7.8E-20 98.8 11.9 119 68-187 2-132 (139)
45 cd05857 Ig2_FGFR Second immuno 99.7 3.2E-15 7E-20 90.5 10.6 82 19-101 4-85 (85)
46 cd05747 Ig5_Titin_like M5, fif 99.7 3.4E-15 7.3E-20 91.6 10.7 89 104-195 3-91 (92)
47 cd05853 Ig6_Contactin-4 Sixth 99.7 2.7E-15 5.8E-20 89.3 9.8 78 121-198 1-82 (85)
48 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.7E-15 3.8E-20 93.9 9.4 84 18-102 12-100 (101)
49 cd05891 Ig_M-protein_C C-termi 99.6 3.5E-15 7.6E-20 91.3 10.5 82 115-197 11-92 (92)
50 cd05867 Ig4_L1-CAM_like Fourth 99.6 3.3E-15 7.1E-20 88.2 10.0 75 120-197 1-75 (76)
51 cd05854 Ig6_Contactin-2 Sixth 99.6 7.6E-15 1.6E-19 88.3 11.2 80 25-105 1-85 (85)
52 cd04972 Ig_TrkABC_d4 Fourth do 99.6 6.7E-15 1.5E-19 89.9 11.2 81 115-197 10-90 (90)
53 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.3E-15 5E-20 85.5 8.2 66 27-102 1-66 (67)
54 cd05854 Ig6_Contactin-2 Sixth 99.6 1.1E-14 2.3E-19 87.7 11.5 77 121-198 1-82 (85)
55 cd05723 Ig4_Neogenin Fourth im 99.6 4.4E-15 9.5E-20 86.4 9.5 71 122-197 1-71 (71)
56 cd05869 Ig5_NCAM-1 Fifth immun 99.6 4.8E-15 1E-19 91.8 10.2 91 9-101 2-97 (97)
57 cd04972 Ig_TrkABC_d4 Fourth do 99.6 8.2E-15 1.8E-19 89.5 11.0 84 16-101 7-90 (90)
58 cd05748 Ig_Titin_like Immunogl 99.6 8.1E-15 1.8E-19 86.2 10.4 74 122-197 1-74 (74)
59 cd05728 Ig4_Contactin-2-like F 99.6 4.9E-15 1.1E-19 89.4 9.6 77 115-197 9-85 (85)
60 cd04969 Ig5_Contactin_like Fif 99.6 3.7E-15 8.1E-20 87.3 8.9 73 120-197 1-73 (73)
61 PF07679 I-set: Immunoglobulin 99.6 2E-15 4.4E-20 92.5 8.1 81 115-197 10-90 (90)
62 cd05868 Ig4_NrCAM Fourth immun 99.6 6.1E-15 1.3E-19 86.9 9.7 75 120-197 1-75 (76)
63 cd05726 Ig4_Robo Fhird immunog 99.6 6.9E-15 1.5E-19 89.8 10.1 82 120-206 1-90 (90)
64 cd05855 Ig_TrkB_d5 Fifth domai 99.6 5.2E-15 1.1E-19 86.8 9.1 72 124-196 2-77 (79)
65 cd05870 Ig5_NCAM-2 Fifth immun 99.6 7.1E-15 1.5E-19 91.2 10.3 90 9-101 2-98 (98)
66 cd05893 Ig_Palladin_C C-termin 99.6 3.7E-15 8.1E-20 87.2 8.4 74 27-101 1-75 (75)
67 cd05773 Ig8_hNephrin_like Eigh 99.6 1.8E-14 3.9E-19 90.9 12.0 98 7-105 2-108 (109)
68 cd05730 Ig3_NCAM-1_like Third 99.6 8.8E-15 1.9E-19 90.4 10.4 81 115-198 13-93 (95)
69 cd05867 Ig4_L1-CAM_like Fourth 99.6 8.4E-15 1.8E-19 86.4 9.8 75 24-101 1-75 (76)
70 cd04978 Ig4_L1-NrCAM_like Four 99.6 6.5E-15 1.4E-19 87.2 9.4 75 120-197 1-75 (76)
71 cd05869 Ig5_NCAM-1 Fifth immun 99.6 8.8E-15 1.9E-19 90.7 10.3 80 117-197 14-97 (97)
72 cd05744 Ig_Myotilin_C_like Imm 99.6 8E-15 1.7E-19 86.1 9.4 74 27-101 1-75 (75)
73 cd04968 Ig3_Contactin_like Thi 99.6 9.7E-15 2.1E-19 88.9 9.7 77 115-197 11-87 (88)
74 cd04973 Ig1_FGFR First immunog 99.6 8.8E-15 1.9E-19 86.9 9.2 77 17-100 2-78 (79)
75 cd05866 Ig1_NCAM-2 First immun 99.6 1.3E-14 2.7E-19 88.3 9.9 84 15-101 6-91 (92)
76 cd04969 Ig5_Contactin_like Fif 99.6 8E-15 1.7E-19 85.9 8.6 73 24-101 1-73 (73)
77 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.5E-14 3.3E-19 89.6 10.3 90 9-101 2-96 (96)
78 cd05868 Ig4_NrCAM Fourth immun 99.6 1.1E-14 2.4E-19 85.7 9.1 75 24-101 1-75 (76)
79 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 1.7E-14 3.8E-19 85.6 9.8 72 124-196 2-79 (81)
80 cd05748 Ig_Titin_like Immunogl 99.6 1.6E-14 3.4E-19 84.9 9.6 74 26-101 1-74 (74)
81 cd04976 Ig2_VEGFR Second immun 99.6 8E-15 1.7E-19 85.1 8.2 70 123-198 1-70 (71)
82 cd05723 Ig4_Neogenin Fourth im 99.6 1.5E-14 3.2E-19 84.1 9.2 71 26-101 1-71 (71)
83 cd07693 Ig1_Robo First immunog 99.6 2.4E-14 5.3E-19 89.5 10.8 92 9-101 1-99 (100)
84 cd05740 Ig_CEACAM_D4 Fourth im 99.6 3E-14 6.5E-19 86.7 10.6 80 16-101 10-90 (91)
85 cd05763 Ig_1 Subgroup of the i 99.6 1.6E-14 3.5E-19 85.1 9.0 74 123-197 1-74 (75)
86 cd05732 Ig5_NCAM-1_like Fifth 99.6 2.6E-14 5.7E-19 88.6 10.4 82 115-197 11-96 (96)
87 cd05746 Ig4_Peroxidasin Fourth 99.6 7.9E-15 1.7E-19 84.8 7.5 68 123-195 1-68 (69)
88 cd05876 Ig3_L1-CAM Third immun 99.6 1.1E-14 2.3E-19 84.7 8.0 70 123-197 1-70 (71)
89 cd04970 Ig6_Contactin_like Six 99.6 2.7E-14 5.9E-19 86.2 10.1 77 121-198 1-82 (85)
90 cd04977 Ig1_NCAM-1_like First 99.6 2.4E-14 5.1E-19 87.6 9.8 85 14-100 5-91 (92)
91 cd05743 Ig_Perlecan_D2_like Im 99.6 3.5E-14 7.6E-19 84.2 10.1 76 120-197 1-76 (78)
92 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.1E-14 2.4E-19 83.8 7.7 69 123-198 1-69 (70)
93 cd05724 Ig2_Robo Second immuno 99.6 3.5E-14 7.5E-19 86.2 10.3 81 16-100 3-85 (86)
94 cd04970 Ig6_Contactin_like Six 99.6 4.3E-14 9.3E-19 85.4 10.4 80 25-105 1-85 (85)
95 cd04978 Ig4_L1-NrCAM_like Four 99.6 2.7E-14 5.9E-19 84.5 9.3 75 24-101 1-75 (76)
96 cd05773 Ig8_hNephrin_like Eigh 99.6 6E-14 1.3E-18 88.5 10.9 80 118-198 21-105 (109)
97 cd04976 Ig2_VEGFR Second immun 99.6 2E-14 4.3E-19 83.4 8.0 70 27-102 1-70 (71)
98 cd05870 Ig5_NCAM-2 Fifth immun 99.6 4.6E-14 1E-18 87.6 10.1 81 115-197 11-98 (98)
99 cd05743 Ig_Perlecan_D2_like Im 99.6 5.7E-14 1.2E-18 83.3 9.4 74 24-99 1-74 (78)
100 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 6.8E-14 1.5E-18 80.5 9.2 68 120-195 1-68 (69)
101 cd04973 Ig1_FGFR First immunog 99.6 5E-14 1.1E-18 83.7 8.9 76 115-197 4-79 (79)
102 cd05866 Ig1_NCAM-2 First immun 99.6 6.6E-14 1.4E-18 85.1 9.5 80 115-197 10-91 (92)
103 cd05760 Ig2_PTK7 Second immuno 99.6 8.8E-14 1.9E-18 82.2 9.8 73 123-198 1-75 (77)
104 cd05746 Ig4_Peroxidasin Fourth 99.6 2.3E-14 5E-19 82.9 7.0 68 27-99 1-68 (69)
105 cd05855 Ig_TrkB_d5 Fifth domai 99.6 8.6E-14 1.9E-18 81.6 9.4 71 29-100 3-77 (79)
106 cd05764 Ig_2 Subgroup of the i 99.6 9E-14 1.9E-18 81.7 9.6 73 120-197 1-74 (74)
107 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.8E-13 3.9E-18 83.3 11.1 77 115-197 13-90 (91)
108 cd05725 Ig3_Robo Third immunog 99.5 4.8E-14 1E-18 81.6 8.2 69 123-197 1-69 (69)
109 cd05848 Ig1_Contactin-5 First 99.5 1.3E-13 2.8E-18 84.7 10.2 80 10-93 2-85 (94)
110 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 1.4E-13 3.1E-18 81.7 9.9 72 28-100 2-79 (81)
111 cd05752 Ig1_FcgammaR_like Frst 99.5 4.1E-14 8.8E-19 83.4 7.5 76 10-100 1-77 (78)
112 cd04977 Ig1_NCAM-1_like First 99.5 1E-13 2.2E-18 84.8 9.6 80 115-196 10-91 (92)
113 cd07693 Ig1_Robo First immunog 99.5 1.6E-13 3.5E-18 85.8 10.7 82 115-197 11-99 (100)
114 cd05726 Ig4_Robo Fhird immunog 99.5 1.2E-13 2.5E-18 84.4 9.7 76 24-104 1-84 (90)
115 cd05856 Ig2_FGFRL1-like Second 99.5 6.4E-14 1.4E-18 84.2 8.4 78 116-197 5-82 (82)
116 cd05858 Ig3_FGFR-2 Third immun 99.5 1.2E-13 2.5E-18 84.4 9.6 77 120-197 1-89 (90)
117 cd05864 Ig2_VEGFR-2 Second imm 99.5 6E-14 1.3E-18 80.7 7.7 68 27-101 1-68 (70)
118 cd05731 Ig3_L1-CAM_like Third 99.5 4.8E-14 1E-18 82.2 7.4 70 123-197 1-70 (71)
119 cd05850 Ig1_Contactin-2 First 99.5 2.8E-13 6E-18 83.2 11.0 86 10-99 2-92 (94)
120 cd05763 Ig_1 Subgroup of the i 99.5 9.5E-14 2.1E-18 81.8 8.6 71 27-101 1-74 (75)
121 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 1.4E-13 3.1E-18 79.2 9.0 68 24-99 1-68 (69)
122 cd05876 Ig3_L1-CAM Third immun 99.5 6.3E-14 1.4E-18 81.5 7.5 70 27-101 1-70 (71)
123 cd05758 Ig5_KIRREL3-like Fifth 99.5 3.4E-13 7.3E-18 83.7 11.3 89 9-99 2-97 (98)
124 cd04974 Ig3_FGFR Third immunog 99.5 1.6E-13 3.4E-18 83.7 9.5 78 120-198 1-90 (90)
125 cd05750 Ig_Pro_neuregulin Immu 99.5 1.3E-13 2.8E-18 81.3 8.8 71 123-194 1-74 (75)
126 cd05722 Ig1_Neogenin First imm 99.5 2E-13 4.3E-18 84.3 10.0 84 14-100 4-94 (95)
127 cd05760 Ig2_PTK7 Second immuno 99.5 2E-13 4.4E-18 80.6 9.4 72 27-102 1-75 (77)
128 PHA02826 IL-1 receptor-like pr 99.5 1.4E-13 3.1E-18 97.7 10.2 119 115-238 32-176 (227)
129 cd05724 Ig2_Robo Second immuno 99.5 2.1E-13 4.5E-18 82.7 9.6 79 115-196 6-85 (86)
130 cd05849 Ig1_Contactin-1 First 99.5 2.7E-13 5.9E-18 82.9 10.0 84 10-99 2-91 (93)
131 cd05764 Ig_2 Subgroup of the i 99.5 2.7E-13 5.8E-18 79.7 9.6 73 24-101 1-74 (74)
132 cd05856 Ig2_FGFRL1-like Second 99.5 1.2E-13 2.6E-18 83.0 8.2 79 19-101 4-82 (82)
133 cd05756 Ig1_IL1R_like First im 99.5 8.2E-14 1.8E-18 85.3 7.4 81 18-101 8-94 (94)
134 cd05858 Ig3_FGFR-2 Third immun 99.5 3.1E-13 6.8E-18 82.5 10.0 77 24-101 1-89 (90)
135 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.9E-13 4.1E-18 80.1 8.4 72 123-197 1-73 (74)
136 cd05725 Ig3_Robo Third immunog 99.5 1.6E-13 3.6E-18 79.4 8.0 69 27-101 1-69 (69)
137 cd07702 Ig2_VEGFR-1 Second imm 99.5 2E-13 4.4E-18 78.7 8.2 70 123-197 1-70 (72)
138 cd05749 Ig2_Tyro3_like Second 99.5 2.6E-13 5.6E-18 80.4 8.9 70 14-93 3-73 (81)
139 cd05736 Ig2_Follistatin_like S 99.5 4.1E-13 9E-18 79.3 9.7 73 124-198 2-74 (76)
140 KOG3515|consensus 99.5 2.8E-13 6.1E-18 108.7 11.5 221 10-239 8-250 (741)
141 cd04974 Ig3_FGFR Third immunog 99.5 4.7E-13 1E-17 81.6 10.0 77 24-101 1-89 (90)
142 cd05765 Ig_3 Subgroup of the i 99.5 2.2E-13 4.7E-18 81.7 8.4 77 120-197 1-81 (81)
143 cd05753 Ig2_FcgammaR_like Seco 99.5 1.9E-13 4.2E-18 81.7 7.6 74 18-100 8-82 (83)
144 cd05736 Ig2_Follistatin_like S 99.5 5.5E-13 1.2E-17 78.7 9.4 74 27-102 1-74 (76)
145 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 3.5E-13 7.6E-18 79.0 8.2 70 27-101 1-73 (74)
146 cd05895 Ig_Pro_neuregulin-1 Im 99.5 5.1E-13 1.1E-17 78.9 8.9 72 123-194 1-75 (76)
147 cd05750 Ig_Pro_neuregulin Immu 99.5 4E-13 8.6E-18 79.2 8.4 72 27-98 1-74 (75)
148 cd05848 Ig1_Contactin-5 First 99.5 8.9E-13 1.9E-17 80.9 10.1 68 119-190 18-86 (94)
149 cd05756 Ig1_IL1R_like First im 99.5 2.4E-13 5.2E-18 83.2 7.4 79 115-197 9-94 (94)
150 cd05898 Ig5_KIRREL3 Fifth immu 99.5 1.5E-12 3.2E-17 79.6 10.7 91 8-99 1-97 (98)
151 cd05731 Ig3_L1-CAM_like Third 99.5 2.9E-13 6.3E-18 78.9 7.4 70 27-101 1-70 (71)
152 cd05742 Ig1_VEGFR_like First i 99.5 4.5E-13 9.7E-18 80.7 8.3 77 120-197 1-83 (84)
153 cd05729 Ig2_FGFR_like Second i 99.5 1.8E-12 3.9E-17 78.4 11.1 81 116-197 5-85 (85)
154 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.4E-12 3.1E-17 80.9 10.6 80 115-195 11-97 (98)
155 cd05873 Ig_Sema4D_like Immunog 99.5 1.3E-12 2.9E-17 78.0 9.2 69 15-90 2-71 (87)
156 cd05765 Ig_3 Subgroup of the i 99.4 8.8E-13 1.9E-17 79.0 8.4 77 24-101 1-81 (81)
157 cd07702 Ig2_VEGFR-1 Second imm 99.4 9.7E-13 2.1E-17 75.8 8.1 67 27-98 1-67 (72)
158 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 2.6E-12 5.7E-17 77.1 10.4 78 120-198 1-83 (84)
159 cd05722 Ig1_Neogenin First imm 99.4 2E-12 4.4E-17 79.8 10.0 79 115-196 9-94 (95)
160 cd05729 Ig2_FGFR_like Second i 99.4 3E-12 6.5E-17 77.4 10.5 81 20-101 5-85 (85)
161 cd05754 Ig3_Perlecan_like Thir 99.4 8.6E-13 1.9E-17 79.7 8.1 77 16-99 8-84 (85)
162 cd07701 Ig1_Necl-3 First (N-te 99.4 1.7E-12 3.7E-17 79.7 9.4 83 16-100 4-94 (95)
163 cd05882 Ig1_Necl-1 First (N-te 99.4 4E-12 8.6E-17 77.8 10.5 72 16-88 4-83 (95)
164 cd05895 Ig_Pro_neuregulin-1 Im 99.4 1.7E-12 3.6E-17 76.6 8.5 70 27-97 1-74 (76)
165 cd05849 Ig1_Contactin-1 First 99.4 2.5E-12 5.5E-17 78.6 9.5 72 119-195 18-91 (93)
166 cd05742 Ig1_VEGFR_like First i 99.4 1.6E-12 3.5E-17 78.3 8.4 77 24-101 1-83 (84)
167 cd05752 Ig1_FcgammaR_like Frst 99.4 8.1E-13 1.8E-17 77.8 6.8 58 115-185 10-68 (78)
168 cd05850 Ig1_Contactin-2 First 99.4 4.6E-12 1E-16 77.8 10.3 70 118-191 17-87 (94)
169 cd05757 Ig2_IL1R_like Second i 99.4 1.7E-12 3.8E-17 78.9 8.3 76 19-99 5-84 (92)
170 cd05749 Ig2_Tyro3_like Second 99.4 2.2E-12 4.8E-17 76.5 8.5 67 115-191 8-75 (81)
171 cd05733 Ig6_L1-CAM_like Sixth 99.4 2.5E-12 5.3E-17 76.0 8.4 67 123-191 1-71 (77)
172 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 8.2E-12 1.8E-16 75.0 10.4 78 24-102 1-83 (84)
173 cd05757 Ig2_IL1R_like Second i 99.4 2.5E-12 5.5E-17 78.2 8.0 78 116-198 6-87 (92)
174 cd05754 Ig3_Perlecan_like Thir 99.4 2.5E-12 5.4E-17 77.6 7.8 74 115-195 11-84 (85)
175 cd05874 Ig6_NrCAM Sixth immuno 99.4 4E-12 8.6E-17 74.9 8.3 67 123-191 1-71 (77)
176 cd05733 Ig6_L1-CAM_like Sixth 99.4 4.3E-12 9.3E-17 74.9 8.2 65 27-93 1-69 (77)
177 cd05875 Ig6_hNeurofascin_like 99.4 8.1E-12 1.7E-16 73.6 9.0 65 123-191 1-71 (77)
178 cd04979 Ig_Semaphorin_C Immuno 99.4 6.7E-12 1.4E-16 76.5 8.5 82 16-102 3-87 (89)
179 cd05874 Ig6_NrCAM Sixth immuno 99.4 9.6E-12 2.1E-16 73.3 8.8 65 27-93 1-69 (77)
180 cd04967 Ig1_Contactin First Ig 99.4 1.1E-11 2.4E-16 75.8 9.4 80 10-93 2-85 (91)
181 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.9E-11 4.1E-16 74.8 10.0 80 115-195 11-97 (98)
182 cd05753 Ig2_FcgammaR_like Seco 99.4 6.1E-12 1.3E-16 75.2 7.7 66 115-189 9-74 (83)
183 cd05734 Ig7_DSCAM Seventh immu 99.4 4.5E-12 9.8E-17 75.4 6.9 69 123-196 1-78 (79)
184 cd05875 Ig6_hNeurofascin_like 99.4 1.4E-11 3E-16 72.6 8.9 63 27-93 1-69 (77)
185 PHA03376 BARF1; Provisional 99.3 3.2E-10 6.9E-15 75.5 16.0 125 18-145 20-163 (221)
186 cd04967 Ig1_Contactin First Ig 99.3 2.6E-11 5.6E-16 74.1 9.5 70 118-191 17-87 (91)
187 cd05734 Ig7_DSCAM Seventh immu 99.3 1.4E-11 3E-16 73.2 7.9 69 27-100 1-78 (79)
188 cd05727 Ig2_Contactin-2-like S 99.3 1.2E-11 2.6E-16 75.0 7.0 73 17-92 11-85 (96)
189 cd05727 Ig2_Contactin-2-like S 99.3 1.3E-11 2.9E-16 74.8 7.0 72 115-189 13-86 (96)
190 cd05896 Ig1_IL1RAPL-1_like Fir 99.3 2.6E-11 5.7E-16 73.8 8.0 84 18-101 9-104 (104)
191 cd07701 Ig1_Necl-3 First (N-te 99.3 4.6E-11 9.9E-16 73.4 8.9 80 115-196 7-94 (95)
192 cd05882 Ig1_Necl-1 First (N-te 99.3 5.4E-11 1.2E-15 72.8 9.1 80 115-196 7-94 (95)
193 cd05717 Ig1_Necl-1-3_like Firs 99.3 1.1E-10 2.4E-15 72.0 10.1 83 16-100 4-94 (95)
194 cd05873 Ig_Sema4D_like Immunog 99.3 7.5E-11 1.6E-15 70.5 8.6 66 115-186 6-71 (87)
195 cd05871 Ig_Semaphorin_classIII 99.3 1.2E-10 2.5E-15 70.9 9.4 77 19-102 6-89 (91)
196 cd05862 Ig1_VEGFR First immuno 99.2 1.2E-10 2.6E-15 70.2 9.2 78 120-198 1-85 (86)
197 cd05885 Ig2_Necl-4 Second immu 99.2 1.1E-10 2.3E-15 68.3 8.5 68 122-189 1-69 (80)
198 PF00047 ig: Immunoglobulin do 99.2 2.7E-11 5.9E-16 68.9 5.9 63 24-86 1-64 (64)
199 cd05862 Ig1_VEGFR First immuno 99.2 1.1E-10 2.4E-15 70.3 8.8 79 24-102 1-85 (86)
200 cd05860 Ig4_SCFR Fourth immuno 99.2 2.3E-10 5E-15 69.5 10.0 83 115-198 13-100 (101)
201 smart00409 IG Immunoglobulin. 99.2 4.4E-10 9.5E-15 67.7 11.6 82 18-101 3-85 (86)
202 smart00410 IG_like Immunoglobu 99.2 4.4E-10 9.5E-15 67.7 11.6 82 18-101 3-85 (86)
203 cd05845 Ig2_L1-CAM_like Second 99.2 4.9E-11 1.1E-15 72.2 7.0 78 10-91 3-83 (95)
204 smart00408 IGc2 Immunoglobulin 99.2 1.5E-10 3.2E-15 65.5 8.1 63 119-187 1-63 (63)
205 cd05885 Ig2_Necl-4 Second immu 99.2 1.9E-10 4.2E-15 67.3 8.3 66 27-92 2-68 (80)
206 cd04979 Ig_Semaphorin_C Immuno 99.2 1.1E-10 2.4E-15 71.0 7.7 79 115-198 6-87 (89)
207 smart00408 IGc2 Immunoglobulin 99.2 1.9E-10 4.2E-15 65.0 7.8 63 23-91 1-63 (63)
208 cd07690 Ig1_CD4 First immunogl 99.2 9.5E-11 2E-15 71.3 6.7 72 20-92 3-90 (94)
209 PF13895 Ig_2: Immunoglobulin 99.2 1.8E-10 3.9E-15 68.7 7.9 71 19-101 9-80 (80)
210 cd05881 Ig1_Necl-2 First (N-te 99.2 7.1E-10 1.5E-14 67.4 10.4 72 16-88 4-83 (95)
211 cd05860 Ig4_SCFR Fourth immuno 99.2 5.5E-10 1.2E-14 67.9 9.7 85 17-102 11-100 (101)
212 PF00047 ig: Immunoglobulin do 99.2 1E-10 2.3E-15 66.5 6.2 63 120-182 1-64 (64)
213 cd05897 Ig2_IL1R2_like Second 99.2 2.1E-10 4.7E-15 69.6 7.3 72 19-92 5-80 (95)
214 cd05845 Ig2_L1-CAM_like Second 99.2 1.4E-10 3E-15 70.3 6.2 70 115-187 13-83 (95)
215 smart00409 IG Immunoglobulin. 99.1 2.3E-09 4.9E-14 64.6 11.5 80 116-197 5-85 (86)
216 smart00410 IG_like Immunoglobu 99.1 2.3E-09 4.9E-14 64.6 11.5 80 116-197 5-85 (86)
217 cd05872 Ig_Sema4B_like Immunog 99.1 6.2E-10 1.3E-14 66.1 8.0 64 17-87 4-67 (85)
218 cd05897 Ig2_IL1R2_like Second 99.1 4.8E-10 1E-14 68.1 7.7 73 116-190 6-82 (95)
219 cd05717 Ig1_Necl-1-3_like Firs 99.1 1.6E-09 3.4E-14 66.8 9.8 80 115-196 7-94 (95)
220 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 6.7E-10 1.5E-14 67.7 7.7 82 116-197 11-104 (104)
221 cd05759 Ig2_KIRREL3-like Secon 99.1 2.6E-09 5.7E-14 63.9 9.8 69 123-191 2-74 (82)
222 cd05871 Ig_Semaphorin_classIII 99.1 1.1E-09 2.5E-14 66.5 8.2 75 117-198 8-89 (91)
223 cd07690 Ig1_CD4 First immunogl 99.1 7.6E-10 1.6E-14 67.3 7.4 72 116-188 3-90 (94)
224 PF13895 Ig_2: Immunoglobulin 99.1 3.5E-10 7.5E-15 67.4 5.7 71 115-197 9-80 (80)
225 cd05877 Ig_LP_like Immunoglobu 99.1 2.6E-09 5.5E-14 67.3 9.2 80 23-102 1-103 (106)
226 cd05751 Ig1_LILRB1_like First 99.1 1.6E-09 3.5E-14 66.0 7.8 73 10-89 3-75 (91)
227 cd05759 Ig2_KIRREL3-like Secon 99.0 5.9E-09 1.3E-13 62.4 9.5 67 26-92 1-71 (82)
228 cd05714 Ig_CSPGs_LP Immunoglob 99.0 5.3E-09 1.1E-13 65.9 9.5 81 23-103 1-104 (106)
229 PF13927 Ig_3: Immunoglobulin 99.0 7.3E-10 1.6E-14 65.1 5.0 75 9-88 1-75 (75)
230 KOG3515|consensus 99.0 4.9E-09 1.1E-13 84.9 10.3 229 3-234 91-339 (741)
231 cd05751 Ig1_LILRB1_like First 99.0 5.6E-09 1.2E-13 63.7 8.3 65 115-185 11-75 (91)
232 cd05883 Ig2_Necl-2 Second immu 99.0 1.2E-08 2.7E-13 59.9 9.0 77 27-103 2-81 (82)
233 cd05881 Ig1_Necl-2 First (N-te 99.0 2.2E-08 4.7E-13 61.0 10.1 70 115-185 7-84 (95)
234 cd05879 Ig_P0 Immunoglobulin ( 99.0 1.7E-08 3.6E-13 64.1 9.9 77 16-92 5-105 (116)
235 cd05878 Ig_Aggrecan_like Immun 98.9 1.5E-08 3.2E-13 64.0 9.5 81 23-103 1-108 (110)
236 cd05718 Ig1_PVR_like First imm 98.9 1.2E-08 2.5E-13 63.4 8.9 77 25-101 1-97 (98)
237 cd05877 Ig_LP_like Immunoglobu 98.9 2E-08 4.3E-13 63.3 9.9 81 119-199 1-104 (106)
238 cd05883 Ig2_Necl-2 Second immu 98.9 2.1E-08 4.4E-13 59.0 9.1 75 123-197 2-79 (82)
239 cd05772 IgC_SIRP Signal-regula 98.9 4.1E-08 8.9E-13 61.8 10.9 88 101-189 2-95 (111)
240 cd05774 Ig_CEACAM_D1 First imm 98.9 1.3E-08 2.8E-13 63.4 8.5 82 17-99 6-103 (105)
241 cd04983 IgV_TCR_alpha_like Imm 98.9 7.1E-09 1.5E-13 65.7 7.6 75 15-90 4-93 (109)
242 cd05900 Ig_Aggrecan Immunoglob 98.9 1.8E-08 3.9E-13 63.5 8.8 80 23-102 1-109 (112)
243 cd05899 IgV_TCR_beta Immunoglo 98.9 7E-09 1.5E-13 65.8 7.1 73 15-89 4-94 (110)
244 cd05775 Ig_SLAM-CD84_like_N N- 98.9 1.8E-08 3.8E-13 62.2 8.3 80 22-101 2-96 (97)
245 cd05755 Ig2_ICAM-1_like Second 98.9 2.1E-08 4.6E-13 61.4 7.9 79 12-91 4-86 (100)
246 cd05713 Ig_MOG_like Immunoglob 98.9 2.2E-08 4.7E-13 62.4 8.2 78 24-101 1-99 (100)
247 cd05846 Ig1_MRC-OX-2_like Firs 98.9 2.3E-08 5E-13 61.8 8.1 78 24-101 1-96 (97)
248 cd05771 IgC_Tapasin_R Tapasin- 98.9 7.4E-09 1.6E-13 68.6 6.3 68 164-236 2-80 (139)
249 PHA02987 Ig domain OX-2-like p 98.9 4.2E-08 9.1E-13 65.9 9.7 88 18-105 24-125 (189)
250 cd00099 IgV Immunoglobulin var 98.9 1.7E-08 3.7E-13 63.5 7.6 72 20-91 2-91 (105)
251 cd05886 Ig1_Nectin-1_like Firs 98.8 6.1E-08 1.3E-12 59.7 9.3 76 26-101 2-98 (99)
252 cd05741 Ig_CEACAM_D1_like Firs 98.8 2.4E-08 5.2E-13 61.1 7.5 68 24-92 1-82 (92)
253 cd05755 Ig2_ICAM-1_like Second 98.8 5.2E-08 1.1E-12 59.7 8.5 74 115-189 11-88 (100)
254 cd05711 Ig_FcalphaRI Immunoglo 98.8 3.7E-08 8E-13 60.4 7.9 74 10-87 2-75 (94)
255 cd05880 Ig_EVA1 Immunoglobulin 98.8 5.4E-08 1.2E-12 62.0 8.7 76 16-91 5-103 (115)
256 cd05887 Ig1_Nectin-3_like Firs 98.8 7.9E-08 1.7E-12 58.6 8.8 77 25-101 1-95 (96)
257 cd05715 Ig_P0-like Immunoglobu 98.8 8E-08 1.7E-12 61.5 8.9 77 16-92 5-105 (116)
258 cd05714 Ig_CSPGs_LP Immunoglob 98.8 1.1E-07 2.5E-12 59.8 9.4 81 119-199 1-104 (106)
259 cd05761 Ig2_Necl-1-4_like Seco 98.8 1E-07 2.2E-12 56.8 8.6 67 123-189 2-71 (82)
260 cd04982 IgV_TCR_gamma Immunogl 98.8 6.7E-08 1.5E-12 61.9 8.3 74 15-88 4-98 (116)
261 cd04980 IgV_L_kappa Immunoglob 98.8 3.7E-08 8.1E-13 62.0 6.9 72 15-88 6-92 (106)
262 cd05872 Ig_Sema4B_like Immunog 98.8 7.7E-08 1.7E-12 57.2 7.7 63 115-184 6-68 (85)
263 cd05718 Ig1_PVR_like First imm 98.8 1.5E-07 3.3E-12 58.3 9.3 77 121-197 1-97 (98)
264 cd05900 Ig_Aggrecan Immunoglob 98.8 1.7E-07 3.7E-12 59.1 9.3 81 119-199 1-110 (112)
265 cd05761 Ig2_Necl-1-4_like Seco 98.7 1.6E-07 3.5E-12 56.0 8.6 65 27-92 2-70 (82)
266 cd05713 Ig_MOG_like Immunoglob 98.7 1.6E-07 3.5E-12 58.4 9.0 78 120-197 1-99 (100)
267 cd05902 Ig_Neurocan Immunoglob 98.7 2.6E-07 5.5E-12 58.0 9.3 79 24-102 2-107 (110)
268 cd05772 IgC_SIRP Signal-regula 98.7 3.8E-07 8.3E-12 57.4 9.9 86 6-92 2-94 (111)
269 cd04983 IgV_TCR_alpha_like Imm 98.7 1.5E-07 3.2E-12 59.6 8.3 71 115-186 8-93 (109)
270 cd07705 Ig2_Necl-1 Second immu 98.7 2.6E-07 5.7E-12 55.1 8.8 66 123-188 2-71 (83)
271 PF13927 Ig_3: Immunoglobulin 98.7 1E-08 2.2E-13 60.2 2.5 57 123-184 18-75 (75)
272 cd05901 Ig_Versican Immunoglob 98.7 3.1E-07 6.7E-12 57.8 9.1 79 24-102 2-114 (117)
273 cd07705 Ig2_Necl-1 Second immu 98.7 4E-07 8.8E-12 54.3 9.3 65 27-92 2-71 (83)
274 cd05889 Ig1_DNAM-1_like First 98.7 3.5E-07 7.5E-12 55.9 9.1 74 25-98 1-92 (96)
275 cd05888 Ig1_Nectin-4_like Frst 98.7 3.8E-07 8.1E-12 56.6 9.4 76 26-101 2-99 (100)
276 cd05716 Ig_pIgR Immunoglobulin 98.7 1.3E-07 2.8E-12 58.6 7.2 71 20-90 3-87 (98)
277 cd05774 Ig_CEACAM_D1 First imm 98.7 3.4E-07 7.3E-12 57.0 8.8 81 115-196 8-104 (105)
278 cd07706 IgV_TCR_delta Immunogl 98.7 1.5E-07 3.2E-12 60.3 7.4 75 14-88 4-93 (116)
279 cd05884 Ig2_Necl-3 Second immu 98.7 3.1E-07 6.8E-12 54.7 8.2 66 123-188 2-71 (83)
280 cd05878 Ig_Aggrecan_like Immun 98.7 3.5E-07 7.6E-12 57.8 8.9 81 119-199 1-108 (110)
281 cd05711 Ig_FcalphaRI Immunoglo 98.7 3.2E-07 6.9E-12 56.2 8.4 67 115-184 10-76 (94)
282 cd05884 Ig2_Necl-3 Second immu 98.7 3E-07 6.6E-12 54.7 8.0 66 27-92 2-71 (83)
283 cd05775 Ig_SLAM-CD84_like_N N- 98.6 2.6E-07 5.7E-12 57.0 7.8 80 118-197 2-96 (97)
284 cd00099 IgV Immunoglobulin var 98.6 2.7E-07 5.8E-12 58.0 7.9 71 116-187 2-91 (105)
285 cd07694 Ig2_CD4 Second immunog 98.6 4.8E-07 1E-11 53.1 8.2 75 20-101 10-85 (88)
286 cd05899 IgV_TCR_beta Immunoglo 98.6 2.9E-07 6.4E-12 58.3 7.8 70 115-186 8-95 (110)
287 cd04984 IgV_L_lambda Immunoglo 98.6 3.1E-07 6.8E-12 56.9 7.6 68 20-88 2-84 (98)
288 cd05886 Ig1_Nectin-1_like Firs 98.6 1.2E-06 2.5E-11 54.0 9.9 37 161-197 61-98 (99)
289 cd05741 Ig_CEACAM_D1_like Firs 98.6 3.3E-07 7.2E-12 56.0 7.4 75 120-195 1-90 (92)
290 cd05846 Ig1_MRC-OX-2_like Firs 98.6 6.3E-07 1.4E-11 55.3 8.5 78 120-197 1-96 (97)
291 cd00098 IgC Immunoglobulin Con 98.6 2.6E-07 5.7E-12 56.9 6.8 71 22-92 11-87 (95)
292 cd00098 IgC Immunoglobulin Con 98.6 5.1E-07 1.1E-11 55.6 7.7 71 118-188 11-87 (95)
293 cd05879 Ig_P0 Immunoglobulin ( 98.6 1.1E-06 2.4E-11 55.9 9.2 75 115-189 8-106 (116)
294 PF07686 V-set: Immunoglobulin 98.5 3.4E-07 7.3E-12 58.4 6.6 74 16-89 8-101 (114)
295 cd05887 Ig1_Nectin-3_like Firs 98.5 1.8E-06 3.9E-11 52.7 9.1 77 121-197 1-95 (96)
296 PHA02987 Ig domain OX-2-like p 98.5 1.4E-06 3.1E-11 58.7 8.8 86 115-200 25-124 (189)
297 PHA03270 envelope glycoprotein 98.5 2.7E-05 5.7E-10 59.1 16.1 159 68-236 183-360 (466)
298 cd07694 Ig2_CD4 Second immunog 98.5 2.6E-06 5.7E-11 50.1 8.6 77 115-198 9-86 (88)
299 cd05888 Ig1_Nectin-4_like Frst 98.5 3.7E-06 8.1E-11 52.1 10.0 76 122-197 2-99 (100)
300 cd04984 IgV_L_lambda Immunoglo 98.5 2E-06 4.3E-11 53.3 8.6 68 116-185 2-85 (98)
301 cd04982 IgV_TCR_gamma Immunogl 98.5 1.5E-06 3.4E-11 55.6 8.3 70 115-185 8-99 (116)
302 cd07700 IgV_CD8_beta Immunoglo 98.5 8E-07 1.7E-11 55.9 6.8 68 20-87 2-92 (107)
303 cd05712 Ig_Siglec_N Immunoglob 98.5 1.3E-06 2.9E-11 56.1 7.7 74 16-89 6-102 (119)
304 cd07699 IgC_L Immunoglobulin C 98.5 8.6E-07 1.9E-11 54.9 6.4 83 9-91 1-90 (100)
305 cd07699 IgC_L Immunoglobulin C 98.5 7.9E-07 1.7E-11 55.1 6.1 71 117-187 14-90 (100)
306 PHA03376 BARF1; Provisional 98.4 1.2E-05 2.5E-10 54.3 11.7 114 115-234 21-162 (221)
307 cd07698 IgC_MHC_I_alpha3 Class 98.4 4.4E-06 9.4E-11 51.1 9.0 81 9-92 2-85 (93)
308 PHA03269 envelope glycoprotein 98.4 4.1E-05 8.8E-10 59.0 15.6 163 66-236 288-470 (566)
309 cd04980 IgV_L_kappa Immunoglob 98.4 2.2E-06 4.8E-11 53.9 7.5 69 115-185 10-93 (106)
310 cd05902 Ig_Neurocan Immunoglob 98.4 3.1E-06 6.7E-11 53.2 7.7 39 161-199 70-108 (110)
311 PF08205 C2-set_2: CD80-like C 98.4 2.5E-06 5.4E-11 51.8 6.9 69 24-92 14-86 (89)
312 cd05901 Ig_Versican Immunoglob 98.4 1E-05 2.2E-10 51.0 9.6 39 161-199 77-115 (117)
313 cd05715 Ig_P0-like Immunoglobu 98.4 5E-06 1.1E-10 53.2 8.4 74 115-188 8-105 (116)
314 cd05880 Ig_EVA1 Immunoglobulin 98.4 6E-06 1.3E-10 52.6 8.6 74 115-188 8-104 (115)
315 cd05770 IgC_beta2m Class I maj 98.3 1.2E-05 2.6E-10 48.9 9.0 71 21-91 12-84 (93)
316 cd05716 Ig_pIgR Immunoglobulin 98.3 4E-06 8.7E-11 51.9 7.1 71 116-186 3-87 (98)
317 cd05889 Ig1_DNAM-1_like First 98.3 1.3E-05 2.8E-10 49.0 8.9 75 121-195 1-93 (96)
318 cd05766 IgC_MHC_II_beta Class 98.3 1.7E-05 3.7E-10 48.5 9.1 71 22-92 12-85 (94)
319 smart00407 IGc1 Immunoglobulin 98.3 9E-06 2E-10 47.5 7.6 65 26-90 1-71 (75)
320 PF08205 C2-set_2: CD80-like C 98.3 4.9E-06 1.1E-10 50.5 6.5 69 120-188 14-86 (89)
321 cd07698 IgC_MHC_I_alpha3 Class 98.3 1.6E-05 3.6E-10 48.5 8.8 68 120-187 14-84 (93)
322 PHA03271 envelope glycoprotein 98.3 0.00044 9.5E-09 52.5 17.5 167 64-236 204-386 (490)
323 cd00096 Ig Immunoglobulin doma 98.2 9E-06 1.9E-10 46.5 7.2 63 27-90 1-66 (74)
324 cd05766 IgC_MHC_II_beta Class 98.2 3.8E-05 8.3E-10 46.9 10.0 71 118-188 12-85 (94)
325 smart00407 IGc1 Immunoglobulin 98.2 1.8E-05 3.9E-10 46.2 8.2 64 123-186 2-71 (75)
326 cd05720 Ig_CD8_alpha Immunoglo 98.2 6.8E-06 1.5E-10 51.4 6.8 66 20-87 2-89 (104)
327 cd07700 IgV_CD8_beta Immunoglo 98.2 8.5E-06 1.9E-10 51.3 7.2 69 116-184 2-93 (107)
328 cd05769 IgC_TCR_beta T cell re 98.2 9.1E-06 2E-10 51.4 7.1 74 21-94 15-96 (115)
329 cd00096 Ig Immunoglobulin doma 98.2 1.5E-05 3.2E-10 45.5 7.6 63 123-186 1-66 (74)
330 KOG1480|consensus 98.2 3.3E-07 7.1E-12 73.8 0.5 174 10-190 25-210 (909)
331 cd05769 IgC_TCR_beta T cell re 98.2 1.2E-05 2.5E-10 50.9 7.3 74 117-190 15-96 (115)
332 cd05847 IgC_CH2_IgE CH2 domain 98.2 1.4E-05 3E-10 48.8 7.5 72 119-190 13-90 (94)
333 cd07706 IgV_TCR_delta Immunogl 98.2 1.3E-05 2.9E-10 51.2 7.8 71 115-185 9-94 (116)
334 PF07686 V-set: Immunoglobulin 98.2 9.2E-06 2E-10 51.7 7.0 82 115-196 11-113 (114)
335 PHA03273 envelope glycoprotein 98.2 0.00034 7.4E-09 53.8 15.9 160 67-234 198-376 (486)
336 cd05767 IgC_MHC_II_alpha Class 98.2 4.1E-05 8.8E-10 46.7 9.0 66 23-91 14-85 (94)
337 cd04981 IgV_H Immunoglobulin ( 98.2 1.6E-05 3.5E-10 50.8 7.6 73 16-88 4-97 (117)
338 cd05768 IgC_CH4 CH4 domain (fo 98.2 1E-05 2.3E-10 50.2 6.5 71 117-187 13-92 (102)
339 cd05767 IgC_MHC_II_alpha Class 98.2 5E-05 1.1E-09 46.3 9.1 65 119-186 14-84 (94)
340 cd05847 IgC_CH2_IgE CH2 domain 98.1 1.6E-05 3.4E-10 48.5 6.9 70 23-92 13-88 (94)
341 PF07654 C1-set: Immunoglobuli 98.1 3.3E-05 7.3E-10 46.1 8.0 67 119-188 7-79 (83)
342 cd05768 IgC_CH4 CH4 domain (fo 98.1 1.7E-05 3.6E-10 49.3 6.8 71 21-91 13-92 (102)
343 cd05719 Ig2_PVR_like Second im 98.1 9.8E-05 2.1E-09 45.1 9.7 70 121-193 16-89 (95)
344 PHA03270 envelope glycoprotein 98.1 0.00065 1.4E-08 51.9 15.6 171 2-184 214-401 (466)
345 cd05770 IgC_beta2m Class I maj 98.1 0.00016 3.4E-09 44.0 10.3 68 118-186 13-83 (93)
346 cd05719 Ig2_PVR_like Second im 98.1 8.9E-05 1.9E-09 45.3 9.2 68 24-94 15-86 (95)
347 PF07654 C1-set: Immunoglobuli 98.1 6.4E-05 1.4E-09 44.9 8.5 68 22-92 6-79 (83)
348 cd05720 Ig_CD8_alpha Immunoglo 98.1 3.4E-05 7.5E-10 48.2 7.3 67 117-184 3-90 (104)
349 smart00406 IGv Immunoglobulin 98.1 2.1E-05 4.6E-10 46.6 6.2 61 26-86 1-81 (81)
350 cd07696 IgC_CH3 CH3 domain (th 98.0 4.6E-05 9.9E-10 46.7 7.4 73 20-92 10-88 (96)
351 cd07696 IgC_CH3 CH3 domain (th 98.0 3E-05 6.6E-10 47.5 6.3 73 116-188 10-88 (96)
352 cd07703 Ig2_Nectin-2_like Seco 98.0 7E-05 1.5E-09 45.7 7.7 74 121-196 16-92 (95)
353 cd07703 Ig2_Nectin-2_like Seco 98.0 0.00011 2.3E-09 44.9 8.4 74 24-100 15-92 (95)
354 cd07697 IgC_TCR_gamma T cell r 98.0 7.1E-05 1.5E-09 45.7 7.6 67 21-90 13-85 (96)
355 cd04986 IgC_CH2 CH2 domain (se 97.9 6.5E-05 1.4E-09 46.0 6.6 70 117-187 16-90 (99)
356 PHA02914 Immunoglobulin-like d 97.9 0.0024 5.1E-08 48.5 15.8 115 117-234 276-418 (500)
357 cd07697 IgC_TCR_gamma T cell r 97.9 0.00015 3.3E-09 44.3 7.9 67 117-186 13-85 (96)
358 PF08204 V-set_CD47: CD47 immu 97.9 2.7E-05 5.9E-10 49.7 4.5 80 22-102 25-120 (130)
359 cd04985 IgC_CH1 CH1 domain (fi 97.9 9.8E-05 2.1E-09 45.2 6.7 67 23-90 15-87 (95)
360 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.00015 3.3E-09 44.1 7.2 75 17-92 9-86 (97)
361 PHA03269 envelope glycoprotein 97.9 0.0018 3.9E-08 50.4 14.3 170 2-184 322-512 (566)
362 cd07691 Ig_CD3_gamma_delta Imm 97.8 8.3E-05 1.8E-09 41.5 5.4 49 24-88 6-54 (69)
363 cd04985 IgC_CH1 CH1 domain (fi 97.8 0.00019 4.1E-09 43.9 7.3 67 119-186 15-87 (95)
364 cd07704 Ig2_Nectin-3-4_like Se 97.8 0.00012 2.5E-09 44.6 6.3 72 115-188 11-86 (97)
365 PHA03271 envelope glycoprotein 97.8 0.0028 6.2E-08 48.3 14.6 136 6-148 244-388 (490)
366 cd07692 Ig_CD3_epsilon Immunog 97.8 7.1E-05 1.5E-09 41.4 4.6 51 22-88 5-55 (65)
367 cd05712 Ig_Siglec_N Immunoglob 97.8 0.0002 4.3E-09 46.0 7.5 71 115-185 9-102 (119)
368 cd07692 Ig_CD3_epsilon Immunog 97.7 9.4E-05 2E-09 41.0 4.6 50 119-184 6-55 (65)
369 cd07689 Ig2_VCAM-1 Second immu 97.7 0.00042 9.1E-09 42.1 7.8 71 116-187 11-87 (99)
370 cd04981 IgV_H Immunoglobulin ( 97.7 0.00029 6.4E-09 45.0 7.4 69 115-184 7-97 (117)
371 PHA02982 hypothetical protein; 97.7 0.0069 1.5E-07 41.9 13.9 122 17-145 32-172 (251)
372 PHA02633 hypothetical protein; 97.7 0.00014 3.1E-09 39.5 4.7 40 66-105 17-56 (63)
373 smart00406 IGv Immunoglobulin 97.7 0.00023 5.1E-09 42.0 6.2 60 122-182 1-81 (81)
374 cd04986 IgC_CH2 CH2 domain (se 97.6 0.00032 6.9E-09 43.0 6.2 70 21-91 16-90 (99)
375 cd07689 Ig2_VCAM-1 Second immu 97.5 0.0011 2.5E-08 40.2 7.5 67 21-88 12-84 (99)
376 PHA02633 hypothetical protein; 97.5 0.00043 9.3E-09 37.6 4.7 38 162-199 17-54 (63)
377 PHA03273 envelope glycoprotein 97.4 0.027 5.8E-07 43.9 15.3 131 2-144 230-376 (486)
378 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0011 2.4E-08 37.1 5.4 50 119-184 5-54 (69)
379 PHA02914 Immunoglobulin-like d 97.2 0.045 9.8E-07 41.9 14.0 164 18-188 273-469 (500)
380 PF08204 V-set_CD47: CD47 immu 97.2 0.00039 8.4E-09 44.6 2.8 80 118-198 25-120 (130)
381 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.005 1.1E-07 38.7 7.2 70 17-86 6-93 (115)
382 PHA02982 hypothetical protein; 97.0 0.013 2.8E-07 40.5 8.8 82 116-197 35-135 (251)
383 PHA03042 CD47-like protein; Pr 96.9 0.01 2.3E-07 42.8 8.1 71 24-102 31-105 (286)
384 KOG1480|consensus 96.6 0.00099 2.1E-08 54.7 1.7 74 15-92 135-208 (909)
385 cd05721 IgV_CTLA-4 Immunoglobu 96.6 0.034 7.4E-07 35.0 7.8 67 115-182 8-93 (115)
386 PHA03042 CD47-like protein; Pr 96.5 0.024 5.3E-07 41.0 7.8 72 118-198 29-105 (286)
387 PF11465 Receptor_2B4: Natural 96.4 0.0096 2.1E-07 36.5 4.5 61 138-198 46-107 (108)
388 TIGR00864 PCC polycystin catio 96.0 1.7 3.7E-05 42.5 19.8 193 12-234 1700-1905(2740)
389 PF07354 Sp38: Zona-pellucida- 96.0 0.017 3.6E-07 41.6 4.8 49 38-90 11-60 (271)
390 PF11465 Receptor_2B4: Natural 95.9 0.024 5.2E-07 34.8 4.4 37 65-101 69-106 (108)
391 PF07354 Sp38: Zona-pellucida- 95.8 0.024 5.1E-07 40.9 4.9 49 134-186 11-60 (271)
392 KOG4597|consensus 95.3 0.039 8.3E-07 43.2 4.8 82 116-198 207-292 (560)
393 PF06328 Lep_receptor_Ig: Ig-l 95.2 0.21 4.6E-06 30.1 6.9 68 16-86 10-81 (89)
394 cd05890 Ig2_Nectin-1_like Seco 94.9 0.085 1.8E-06 31.7 4.5 73 123-196 23-97 (98)
395 KOG4597|consensus 94.9 0.067 1.4E-06 42.0 5.0 86 16-102 203-292 (560)
396 PHA02865 MHC-like TNF binding 94.5 0.19 4.2E-06 38.1 6.6 37 7-47 201-238 (338)
397 PHA02865 MHC-like TNF binding 94.4 0.23 5E-06 37.7 6.8 22 122-143 216-238 (338)
398 PF05790 C2-set: Immunoglobuli 94.2 0.44 9.6E-06 28.0 6.4 52 135-197 26-78 (80)
399 PF05790 C2-set: Immunoglobuli 94.0 0.66 1.4E-05 27.3 6.9 51 40-101 27-78 (80)
400 TIGR00864 PCC polycystin catio 94.0 7 0.00015 38.7 21.1 158 21-200 1965-2127(2740)
401 KOG0613|consensus 93.5 0.5 1.1E-05 42.0 8.0 131 67-198 278-428 (1205)
402 PHA03283 envelope glycoprotein 92.2 5.4 0.00012 32.4 12.4 77 66-142 133-233 (542)
403 PF02124 Marek_A: Marek's dise 91.9 3.4 7.4E-05 29.3 13.2 134 40-184 7-159 (211)
404 cd05890 Ig2_Nectin-1_like Seco 91.4 0.87 1.9E-05 27.6 4.9 71 27-99 23-96 (98)
405 PHA03052 Hypothetical protein; 90.5 1.1 2.3E-05 25.2 4.3 36 17-52 5-42 (69)
406 PF06328 Lep_receptor_Ig: Ig-l 90.3 1.1 2.4E-05 27.0 4.8 65 115-182 13-81 (89)
407 KOG0613|consensus 89.6 0.91 2E-05 40.5 5.5 166 17-187 342-517 (1205)
408 PHA03112 IL-18 binding protein 89.0 2.4 5.2E-05 27.8 5.8 30 19-48 33-63 (141)
409 PF03921 ICAM_N: Intercellular 88.9 3.6 7.8E-05 24.9 8.9 82 13-106 7-90 (91)
410 PF02124 Marek_A: Marek's dise 88.3 7.3 0.00016 27.7 9.2 95 135-236 6-116 (211)
411 PHA03240 envelope glycoprotein 88.2 1.3 2.8E-05 31.1 4.5 68 18-86 32-124 (258)
412 KOG1026|consensus 87.7 1.7 3.6E-05 37.2 5.7 163 18-198 201-363 (774)
413 PHA03286 envelope glycoprotein 84.3 6.4 0.00014 31.3 6.9 39 162-200 126-165 (492)
414 KOG1026|consensus 83.1 0.94 2E-05 38.6 2.3 168 18-198 61-273 (774)
415 PHA03189 UL14 tegument protein 82.5 19 0.00041 27.2 10.6 76 16-92 59-158 (348)
416 PHA03286 envelope glycoprotein 82.1 25 0.00053 28.3 13.2 77 66-142 126-225 (492)
417 PF06832 BiPBP_C: Penicillin-B 80.8 9.7 0.00021 22.8 8.4 54 26-93 31-84 (89)
418 PHA03052 Hypothetical protein; 80.5 4.4 9.6E-05 22.8 3.6 35 115-149 7-43 (69)
419 PHA03240 envelope glycoprotein 75.5 7 0.00015 27.6 4.2 29 161-189 103-131 (258)
420 PF11049 KSHV_K1: Glycoprotein 72.8 9.7 0.00021 21.3 3.5 44 28-88 2-45 (71)
421 PF01688 Herpes_gI: Alphaherpe 68.3 17 0.00037 24.7 4.7 36 66-101 123-158 (161)
422 PF02440 Adeno_E3_CR1: Adenovi 64.9 22 0.00049 19.8 4.6 21 21-46 2-22 (63)
423 PF06832 BiPBP_C: Penicillin-B 63.4 29 0.00064 20.7 9.6 56 122-191 31-86 (89)
424 PHA03112 IL-18 binding protein 63.3 41 0.0009 22.3 6.3 27 118-144 36-63 (141)
425 PF05955 Herpes_gp2: Equine he 60.0 55 0.0012 22.7 6.1 60 31-90 114-179 (226)
426 PHA03281 envelope glycoprotein 59.2 48 0.001 27.5 6.3 40 162-201 297-337 (642)
427 PHA03290 envelope glycoprotein 55.3 41 0.00089 25.9 5.1 37 66-102 128-164 (357)
428 PF01688 Herpes_gI: Alphaherpe 54.6 39 0.00085 23.1 4.5 34 163-196 124-157 (161)
429 PRK14081 triple tyrosine motif 53.7 1.5E+02 0.0033 25.7 19.5 156 21-198 302-476 (667)
430 PHA03283 envelope glycoprotein 53.2 46 0.00099 27.5 5.4 38 162-199 133-170 (542)
431 PF00801 PKD: PKD domain; Int 52.3 40 0.00087 18.8 5.4 29 19-48 6-34 (69)
432 PHA03282 envelope glycoprotein 49.0 45 0.00098 27.1 4.7 37 66-102 123-161 (540)
433 PF11141 DUF2914: Protein of u 48.5 49 0.0011 18.6 7.8 59 40-101 7-65 (66)
434 PHA03282 envelope glycoprotein 48.4 53 0.0012 26.7 5.0 37 162-198 123-161 (540)
435 PF13220 DUF4028: Protein of u 45.5 21 0.00045 18.9 1.7 20 170-189 5-24 (65)
436 PHA03289 envelope glycoprotein 45.4 63 0.0014 24.8 4.8 36 66-101 121-156 (352)
437 PHA03189 UL14 tegument protein 42.5 1.6E+02 0.0034 22.7 10.0 21 165-186 136-156 (348)
438 PHA03292 envelope glycoprotein 42.2 68 0.0015 25.3 4.6 36 66-101 127-162 (413)
439 PHA03291 envelope glycoprotein 40.6 94 0.002 24.3 5.1 37 66-102 128-164 (401)
440 COG5475 Uncharacterized small 40.1 63 0.0014 17.4 3.4 28 164-193 19-46 (60)
441 PF02010 REJ: REJ domain; Int 39.7 16 0.00035 29.4 1.3 77 66-142 147-233 (440)
442 KOG0200|consensus 36.4 2.8E+02 0.0061 23.9 9.9 111 66-186 12-140 (609)
443 PF03921 ICAM_N: Intercellular 35.5 1.1E+02 0.0023 18.7 9.7 74 115-198 13-86 (91)
444 PHA03290 envelope glycoprotein 31.4 1.3E+02 0.0028 23.4 4.6 36 162-197 128-163 (357)
445 PHA03289 envelope glycoprotein 31.3 1.4E+02 0.003 23.1 4.7 35 163-197 122-156 (352)
446 PF04668 Tsg: Twisted gastrula 30.4 17 0.00036 23.7 -0.0 16 219-234 93-108 (132)
447 PHA03281 envelope glycoprotein 30.1 3.4E+02 0.0074 23.0 7.0 77 66-142 297-394 (642)
448 PHA03291 envelope glycoprotein 29.3 2.3E+02 0.0049 22.4 5.5 36 163-198 129-164 (401)
449 PHA03292 envelope glycoprotein 28.6 1.5E+02 0.0032 23.5 4.6 36 162-197 127-162 (413)
450 KOG3611|consensus 23.9 1.8E+02 0.0038 25.8 4.7 72 26-103 571-649 (737)
451 PF02480 Herpes_gE: Alphaherpe 23.2 27 0.00059 28.3 0.0 77 66-142 88-189 (439)
452 PF03293 Pox_RNA_pol: Poxvirus 23.0 2.4E+02 0.0051 18.7 5.4 19 27-52 68-86 (160)
453 PF09191 CD4-extracel: CD4, ex 22.7 2.1E+02 0.0045 17.9 7.0 34 67-100 74-107 (108)
454 PF12988 DUF3872: Domain of un 21.7 2.5E+02 0.0055 18.6 7.1 36 11-46 34-73 (137)
455 PF03174 CHB_HEX_C: Chitobiase 21.1 1.8E+02 0.0039 16.6 4.5 61 18-94 9-69 (75)
456 PHA02935 Hypothetical protein; 21.0 90 0.0019 22.0 2.1 36 163-198 102-138 (349)
457 smart00635 BID_2 Bacterial Ig- 20.9 1.9E+02 0.0041 16.8 4.1 39 13-51 6-46 (81)
No 1
>KOG3513|consensus
Probab=100.00 E-value=7.4e-32 Score=218.37 Aligned_cols=225 Identities=22% Similarity=0.329 Sum_probs=184.7
Q ss_pred eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGN 81 (243)
Q Consensus 2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 81 (243)
..|.+..+|.+...+++..+..|+++.|.|.+. +.|.+.|+|++||.++....+...... ....|+|.+++..|+|.
T Consensus 324 ~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~-g~P~p~v~WlkNg~pl~~~~r~~~~~i--~~g~L~is~v~~~dsg~ 400 (1051)
T KOG3513|consen 324 GHVTVYAPPYWLQKPQDTEADTGSNVTLECKAS-GKPNPTVKWLKNGEPLEPAERDPRYKI--DDGTLIISNVQESDSGV 400 (1051)
T ss_pred EEEEEecCchhhcccceeEecCCCCeEEEEEec-CCCCCceEEeeCCeecCccCCCcceEE--eCCEEEEEecccccCeE
Confidence 467899999999999999999999999999995 999999999999999987665221111 16789999999999999
Q ss_pred EEEEEEeCCCcceeEEEEEEEcC-CCccccccCC-CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec
Q psy11132 82 YSCTVRNMVAEDTQVQRLIVNVP-PKIESFAFPF-DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159 (243)
Q Consensus 82 Y~C~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 159 (243)
|+|.|+|..|.....+.|.|... |.+...+... ..+..|.++.|.|.. .+.|.+.++|.+++..+....++.+..
T Consensus 401 YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~~~~~~~r~~i~e-- 477 (1051)
T KOG3513|consen 401 YQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGEKLLQSGRIRILE-- 477 (1051)
T ss_pred EEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCcccccCceEEECC--
Confidence 99999999999999999999876 5555444332 245689999999999 799999999999998655555444432
Q ss_pred cceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeee-------eccceeeeccCccccc----cc
Q psy11132 160 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL-------VFSQASYMSTSYYSFE----QD 228 (243)
Q Consensus 160 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~----~~ 228 (243)
.++|.|.+++.+|+|.|+|.|.|..|.......|.|+ .++.+++ ..+..+++.|+...-+ .|
T Consensus 478 --dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vk-----d~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f 550 (1051)
T KOG3513|consen 478 --DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVK-----DATRITLAPSNTDVKVGESVTLTCEASHDPSLDITF 550 (1051)
T ss_pred --CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEe-----cCceEEeccchhhhccCceEEEEeecccCCCcceEE
Confidence 5789999999999999999999999999999999999 4555444 4467888899876433 78
Q ss_pred ceEEeCCeeEE
Q psy11132 229 SWMIDNENYVY 239 (243)
Q Consensus 229 ~W~~~~~~~~~ 239 (243)
.|.+||+.+.+
T Consensus 551 ~W~~nG~~id~ 561 (1051)
T KOG3513|consen 551 TWKKNGRPIDF 561 (1051)
T ss_pred EEEECCEEhhc
Confidence 99999986543
No 2
>KOG3513|consensus
Probab=99.97 E-value=2e-29 Score=204.48 Aligned_cols=219 Identities=24% Similarity=0.372 Sum_probs=175.2
Q ss_pred cCCCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132 8 VPPKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV 86 (243)
Q Consensus 8 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 86 (243)
.+|.+... ++.....+|+.+.|.|.+ .|.|.|.|.|.|.+..... .+.. .......|.|.+++.+|+|.|.|.|
T Consensus 239 ~~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~~~-~r~~---~~~~~~vL~I~nv~~~D~G~Y~C~A 313 (1051)
T KOG3513|consen 239 YAPKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKPPP-RRAT---YSNYGKVLKIPNVQYEDAGEYECIA 313 (1051)
T ss_pred cCCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCCCC-ccee---eeccccEEEecccCcCCCeEEEEEE
Confidence 46666655 557778899999999999 6999999999998874322 1111 1123678999999999999999999
Q ss_pred EeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132 87 RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 166 (243)
Q Consensus 87 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
.|..|.......+.|..+|.....+.. ..+..|+++.+.|.+ .|.|.|.+.|+++|.++.......... -....|.
T Consensus 314 eN~~G~~~~~~~v~v~a~P~w~~~~~d-~~~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~--i~~g~L~ 389 (1051)
T KOG3513|consen 314 ENSRGSATHSGHVTVYAPPYWLQKPQD-TEADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYK--IDDGTLI 389 (1051)
T ss_pred ecccccceeeEEEEEecCchhhcccce-eEecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceE--EeCCEEE
Confidence 999999999999999999998875544 677899999999999 599999999999999998654411111 1247899
Q ss_pred EeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCC--C---eeeeeccceeeeccCccccc--ccceEEeCC
Q psy11132 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLP--P---SYTLVFSQASYMSTSYYSFE--QDSWMIDNE 235 (243)
Q Consensus 167 i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~--p---~~~~~~~~~~~~~~~~~~~~--~~~W~~~~~ 235 (243)
|.+++..|+|.|.|.|.|.+|..-+++.|.|....+..+ | .+....+..+++.|.....| .++|.+.++
T Consensus 390 is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~ 465 (1051)
T KOG3513|consen 390 ISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGE 465 (1051)
T ss_pred EEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCc
Confidence 999999999999999999999999999999985321111 1 13445678889999988876 899999887
No 3
>KOG4194|consensus
Probab=99.95 E-value=3.1e-27 Score=180.38 Aligned_cols=230 Identities=23% Similarity=0.348 Sum_probs=172.0
Q ss_pred cCCCccCCCCCcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecC-----CCceEE-------EEeeeeceEEEEeec
Q psy11132 8 VPPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDN-----SAALSI-------THVDQYNSMLVIDSV 74 (243)
Q Consensus 8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~-----~~~~~~-------~~~~~~~~~l~i~~~ 74 (243)
..|++...|+.+....|+.++|+|.+... ..+.++.|.++...... ...+.- .......+.|++.++
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 45788888888889999999999998532 34569999998763211 000000 001112478999999
Q ss_pred CCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe
Q psy11132 75 SARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 153 (243)
Q Consensus 75 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~ 153 (243)
+..|+|.|+|+++|..|+ -+..+++.|...|.+...+.. .++..|....|.|.+ .|.|.|++.|.++|..-.+..+.
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~d-ltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFPAA~e 659 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPED-LTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFPAARE 659 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCccc-ceeecccceeeeeec-cCCCCcceeehhcCCCCCchhhh
Confidence 999999999999999997 577899999999999988766 788899999999999 69999999999988763322222
Q ss_pred eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCe--eeeeccceeeeccCcccc---ccc
Q psy11132 154 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS--YTLVFSQASYMSTSYYSF---EQD 228 (243)
Q Consensus 154 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~--~~~~~~~~~~~~~~~~~~---~~~ 228 (243)
.....-.....+.|.++..+|.|.|+|.|.|.+|..+..+++.|...+...-|. -.+..++..++.|..-.. |..
T Consensus 660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~ 739 (873)
T KOG4194|consen 660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRL 739 (873)
T ss_pred heeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccc
Confidence 222222224568899999999999999999999999999999999543222221 234557777887765544 589
Q ss_pred ceEEeCCeeEE
Q psy11132 229 SWMIDNENYVY 239 (243)
Q Consensus 229 ~W~~~~~~~~~ 239 (243)
.|+|+++.+.+
T Consensus 740 ~W~k~d~pil~ 750 (873)
T KOG4194|consen 740 EWFKEDKPILI 750 (873)
T ss_pred cccCCCCceEE
Confidence 99999887765
No 4
>KOG4221|consensus
Probab=99.95 E-value=8.7e-26 Score=183.61 Aligned_cols=231 Identities=20% Similarity=0.291 Sum_probs=175.2
Q ss_pred eEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82 (243)
Q Consensus 3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 82 (243)
.|.+...+.+...+.+.++..|+++.|.|.+. +.+.+.+.|.++..++....++.... ++.|.|.+++..|.|.|
T Consensus 134 ~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn-~e~~p~i~w~kn~~pl~~~~r~i~lp----sG~L~I~~~qp~d~g~y 208 (1381)
T KOG4221|consen 134 KVALAGLADFALQPESTTLLYGQTALFSCEVN-AEPVPTIMWLKNDQPLPLDSRVIVLP----SGALEISGLQPSDTGEY 208 (1381)
T ss_pred EEEecccCccccCccceeEecCCcEEEEEEEc-CccCceeEEecccccccCCCcEEEcC----CCcEEecccccCCCceE
Confidence 46677788899888899999999999999994 77778999999999887766665543 67899999999999999
Q ss_pred EEEEEeCCCc-ceeEEEEEEEcCCCcc-----ccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEE
Q psy11132 83 SCTVRNMVAE-DTQVQRLIVNVPPKIE-----SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS 156 (243)
Q Consensus 83 ~C~~~~~~~~-~~~~~~l~v~~~p~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 156 (243)
+|.+++.... .+....|.|...|... ...+....+..|+.+.|.|.+ .+.|.|.+.|.+++..+.... +.+.
T Consensus 209 rc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~riv 286 (1381)
T KOG4221|consen 209 RCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIV 286 (1381)
T ss_pred EEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEE
Confidence 9999986553 4566777776333221 112233567889999999999 699999999999999988654 2222
Q ss_pred eeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec--CCCCCeeeeeccceeeeccCccccc--ccceEE
Q psy11132 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL--NRLPPSYTLVFSQASYMSTSYYSFE--QDSWMI 232 (243)
Q Consensus 157 ~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~ 232 (243)
.. ..+.|.|.+++..|+|.|+|.|.|......+..++.|..++ ...|-.+.........+.|...+-+ .+.|++
T Consensus 287 l~--g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k 364 (1381)
T KOG4221|consen 287 LV--GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK 364 (1381)
T ss_pred Ee--cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe
Confidence 11 24678999999999999999999977777788888888322 1112223334456677888776654 899999
Q ss_pred eCCeeEEeec
Q psy11132 233 DNENYVYCTY 242 (243)
Q Consensus 233 ~~~~~~~~~~ 242 (243)
||+.+...+|
T Consensus 365 Ngd~~ipsdy 374 (1381)
T KOG4221|consen 365 NGDRIIPSDY 374 (1381)
T ss_pred cCcccCcccc
Confidence 9998765544
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=1.3e-23 Score=157.69 Aligned_cols=204 Identities=21% Similarity=0.298 Sum_probs=140.5
Q ss_pred cccccCCeEEEEEEee----CCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132 19 RTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 94 (243)
..+.+|+.+.|.|.+. .+.|.+.+.|+|++.... + ..... .+..|.|.++..+|+|.|+|.++|..+...
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~--~~~~~-~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~ 109 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND---R--IIPID-NGSNMLILNPTQSDSGIYICITKNETYCDM 109 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc---e--EEEcc-CCceEEEcccCcccCeEEEEEEECCCcceE
Confidence 3567899999999862 377778999999975321 1 11111 134588999999999999999999988777
Q ss_pred eEEEEEEEcCCC--ccccccCCCCCCCCCcEEEEEEe----ecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEe
Q psy11132 95 QVQRLIVNVPPK--IESFAFPFDGLPEGARTRVICGV----THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 168 (243)
Q Consensus 95 ~~~~l~v~~~p~--~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 168 (243)
.++.|.|..... +..... ...+.+|....|.|.. ..+.|++.++|+++.. +.. ..... ..++.|.|.
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~-~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~-~r~~~----~~~~~L~i~ 182 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISY-PQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN-KRLKQ----RTPGIITIE 182 (326)
T ss_pred EEEEEEEEecCCCccceeec-cceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC-cceEe----cCCCeEEEe
Confidence 778887765432 221111 1345689999999962 1356889999987643 221 11111 113679999
Q ss_pred ecCCCCCeeEEEEEEccCcceeee----EEEEEEeecCCCCCe------eeeeccceeeeccCccccc-----ccceEEe
Q psy11132 169 SVSAAHSGEYTCVASNTAAQARYS----SKLQVKGNLNRLPPS------YTLVFSQASYMSTSYYSFE-----QDSWMID 233 (243)
Q Consensus 169 ~~~~~d~g~y~C~~~n~~g~~~~~----~~l~v~~~~~~~~p~------~~~~~~~~~~~~~~~~~~~-----~~~W~~~ 233 (243)
+++.+|.|.|+|.|.|..|..... +.+.|.. +..||. .....+..+.+.|.....| .+.|++|
T Consensus 183 ~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~--~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn 260 (326)
T PHA02785 183 DVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRD--RIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN 260 (326)
T ss_pred ecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEec--cCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEEC
Confidence 999999999999999988765433 3444432 223443 3445688899999988654 5899999
Q ss_pred CCee
Q psy11132 234 NENY 237 (243)
Q Consensus 234 ~~~~ 237 (243)
|..+
T Consensus 261 g~~i 264 (326)
T PHA02785 261 GMYY 264 (326)
T ss_pred CEEC
Confidence 8754
No 6
>KOG4194|consensus
Probab=99.92 E-value=6.4e-24 Score=162.51 Aligned_cols=188 Identities=24% Similarity=0.351 Sum_probs=154.7
Q ss_pred eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCee-ecC--CCceEEEEeeeeceEEEEeecCCCC
Q psy11132 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRY-LDN--SAALSITHVDQYNSMLVIDSVSARH 78 (243)
Q Consensus 2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-~~~--~~~~~~~~~~~~~~~l~i~~~~~~d 78 (243)
+.|.|...|.+...|.+.++..|+.+.|.|.++ |.|.|.|.|.++|.. ++. ..++.+... +..+-|.+++.+|
T Consensus 605 ~KltV~~~PsFtktP~dltl~tg~mArl~CaAt-G~P~PeIawqkdggtdFPAA~eRRl~Vmpe---dd~f~Itnvk~eD 680 (873)
T KOG4194|consen 605 AKLTVNQAPSFTKTPEDLTLRTGQMARLECAAT-GHPRPEIAWQKDGGTDFPAARERRLHVMPE---DDVFFITNVKIED 680 (873)
T ss_pred eEEEeeccCccccCcccceeecccceeeeeecc-CCCCcceeehhcCCCCCchhhhheeeecCC---CCEEEEecccccc
Confidence 568899999999999999999999999999995 889999999998876 432 233333332 4568899999999
Q ss_pred CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEe
Q psy11132 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD 157 (243)
Q Consensus 79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~ 157 (243)
+|.|+|.|.|..|..+..++|.|.+.|.+...-. ...+..|+++.|.|.+ .+.|+ |.+.|+|+++++.-..++...
T Consensus 681 ~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~-~~~V~~get~vlqC~a-~~~~a~pr~~W~k~d~pil~t~rh~f~- 757 (873)
T KOG4194|consen 681 QGIYTCTAQNVAGQISANATLTVLETPSFSIPLE-DQLVVVGETLVLQCLA-EGAPADPRLEWFKEDKPILITERHTFP- 757 (873)
T ss_pred cceeEEeeeccccceeeceEEEEecCCccccccc-ceEEEecceEEEEEec-CCCCCCccccccCCCCceEEeecccCC-
Confidence 9999999999999999999999999988765533 3778899999999999 57776 999999999887644333322
Q ss_pred eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
.....|.+.+...+|+|.|+|...|..|.....+.+.+.
T Consensus 758 --d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~ 796 (873)
T KOG4194|consen 758 --DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY 796 (873)
T ss_pred --CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence 224668888999999999999999999998887777665
No 7
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.91 E-value=1.2e-22 Score=143.59 Aligned_cols=162 Identities=20% Similarity=0.279 Sum_probs=116.3
Q ss_pred CCcccccCCeEEEEEEeeCC----------CCCceeEEEECCeee--c-CCCc-----eEEEEeeeeceEEEEeecCCCC
Q psy11132 17 PERTLNVGERASLICSITKG----------DIPLTIKWLKDGRYL--D-NSAA-----LSITHVDQYNSMLVIDSVSARH 78 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~----------~~~~~v~W~~~~~~~--~-~~~~-----~~~~~~~~~~~~l~i~~~~~~d 78 (243)
....+.+|+++.|.|.+.+. ...+.+.|+|++... . .+.+ ............|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 35678899999999997421 234589999987542 1 1111 0011111125689999999999
Q ss_pred CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecC----CCCCEEEEEeCCEecCCCCCee
Q psy11132 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPRFPVN 154 (243)
Q Consensus 79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~ 154 (243)
+|.|+|.+.|..+.....+.|.|..++ ....+.+|+.+.|.|.+.++ .|.|+++|++++..+.......
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 999999999988777777777774322 11345689999999987533 4578999999999987554333
Q ss_pred EEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 155 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
.. .....|.|.+++.+|+|.|+|.|....+.
T Consensus 183 ~~---~~~~~L~I~~V~~~DsG~YtC~a~~~~~g 213 (227)
T PHA02826 183 LR---NNNSTLVIKSATHDDSGIYTCNLRFNKNS 213 (227)
T ss_pred Ee---CCCCEEEECcCCHHhCEEEEEEEEEeECC
Confidence 22 22458999999999999999999986543
No 8
>KOG4221|consensus
Probab=99.89 E-value=4.3e-22 Score=162.46 Aligned_cols=214 Identities=22% Similarity=0.376 Sum_probs=161.8
Q ss_pred ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
|...+...++.+|+++.|.|.+. +.|.+.|+|.+|+..+.-.. +.+... +...|.|.+++..|+|.|+|+|.|...
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs-~~p~p~v~Wlrng~~i~~ds-~rivl~--g~~slliS~a~~~dSg~YtC~Atn~~D 315 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVS-GVPKPSVKWLRNGEKISVDS-YRIVLV--GGSSLLISNATDDDSGKYTCRATNTND 315 (1381)
T ss_pred eecCCCccccccCCcEEEEEEec-CCCCCceEEeeCCeeeeecc-eEEEEe--cccceEEeccccccCceEEEEecCCCc
Confidence 44557778899999999999994 88999999999998886543 222222 257799999999999999999999766
Q ss_pred cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC
Q psy11132 92 EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 171 (243)
Q Consensus 92 ~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 171 (243)
.......|.|..+|.+...+.. ....++.++.+.|.+ .|.|.+.+.|+++|..+...+...+.. + .. |+|..+-
T Consensus 316 ~idasaev~V~a~P~~~~~p~~-l~A~e~~die~ec~~-~g~p~p~v~w~kNgd~~ipsdy~ki~~-~--~~-lrIlgi~ 389 (1381)
T KOG4221|consen 316 SIDASAEVTVLAPPGFTKAPTT-LVAHESMDIEFECPV-SGKPIPTVRWYKNGDRIIPSDYFKIVG-G--GN-LRILGIV 389 (1381)
T ss_pred ccccceEEEEEcCCCCCCCCcc-eeeeeccceeEeCCC-CCCCcceEEEEecCcccCcccceEecC-C--CC-cEEEEEe
Confidence 6777888999999888766544 555679999999999 688999999999999887744333322 1 22 8888889
Q ss_pred CCCCeeEEEEEEccCcceeeeEEEEEEee--------cCCCCCeeeeeccceeeeccCccc-------ccccceEEeCC
Q psy11132 172 AAHSGEYTCVASNTAAQARYSSKLQVKGN--------LNRLPPSYTLVFSQASYMSTSYYS-------FEQDSWMIDNE 235 (243)
Q Consensus 172 ~~d~g~y~C~~~n~~g~~~~~~~l~v~~~--------~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~W~~~~~ 235 (243)
..|.|.|.|.+.|..|.....+.+.+... .+..|+-+...+.....+.|.... ...++|++..+
T Consensus 390 ~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~ 468 (1381)
T KOG4221|consen 390 KSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVE 468 (1381)
T ss_pred cccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecC
Confidence 99999999999999999988877765422 222344455666666666665541 12678876544
No 9
>KOG4222|consensus
Probab=99.88 E-value=5e-22 Score=161.20 Aligned_cols=221 Identities=26% Similarity=0.397 Sum_probs=173.6
Q ss_pred EEEe-cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeE
Q psy11132 4 IFST-VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82 (243)
Q Consensus 4 l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 82 (243)
|.+. .+-.+...+.+..+..|+.+.|.|.=..+.|.+.+.|.|+|+++.....-.... ...+.|.|.+++..|+|.|
T Consensus 125 L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l--isgG~LlIsnvrksD~GtY 202 (1281)
T KOG4222|consen 125 LIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL--ISGGNLLISNVRKSDEGTY 202 (1281)
T ss_pred EEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE--ecCCcEEEeccccCCCcee
Confidence 4444 344677777788889999999999877788889999999999987322111111 1267899999999999999
Q ss_pred EEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc
Q psy11132 83 SCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 161 (243)
Q Consensus 83 ~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 161 (243)
.|++.|..|. .+...+|.|.++|.+...+.. ..+..|..+.+.|.+ .|.|.+++.|.+++..+..........
T Consensus 203 ~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~-~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~~~~~P~~ry~i~~d---- 276 (1281)
T KOG4222|consen 203 ACVATNMVGERESIPARLSVQEKPWFWKRPKD-LAVLVGAAAEFDCRV-GGDPQPTVRWKKDDPSLPRSRYSILDD---- 276 (1281)
T ss_pred eeeecccccccccccceeeeccCCcccccccc-ceeeccccccccccc-CCCCCCceeeeccCCCCCccceeeeec----
Confidence 9999999987 567789999999988765544 667889999999999 799999999999877776543322221
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccc-------eeeeccCccccc--ccceEE
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ-------ASYMSTSYYSFE--QDSWMI 232 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~-------~~~~~~~~~~~~--~~~W~~ 232 (243)
+.+|.|.+++..|.|.|.|.+.|..|...+...++|+ .||.+...+.+ .+.|.|+...-| .+.|.+
T Consensus 277 ~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~-----apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~k 351 (1281)
T KOG4222|consen 277 TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ-----APPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLK 351 (1281)
T ss_pred cccccccccCCCcccceeeeccccccccccccceEEe-----cCcccccccCccccccCceEEeeeecCCCCCcceEEec
Confidence 3678999999999999999999999999999999999 78877665543 455667666554 899998
Q ss_pred eCCee
Q psy11132 233 DNENY 237 (243)
Q Consensus 233 ~~~~~ 237 (243)
.|.-.
T Consensus 352 eg~q~ 356 (1281)
T KOG4222|consen 352 EGSQD 356 (1281)
T ss_pred cCcce
Confidence 87544
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.88 E-value=2.7e-20 Score=139.84 Aligned_cols=175 Identities=18% Similarity=0.319 Sum_probs=115.4
Q ss_pred CCCccCCCCCcccccCCeEEEEEEe----eCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSI----TKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSC 84 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 84 (243)
+|.+........+.+|+.+.|.|.. ..+.+++.+.|++++ .+. ..++... .++.|.|.+++.+|+|.|+|
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~-~~r~~~~----~~~~L~i~~v~~~d~G~Y~C 194 (326)
T PHA02785 121 ESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLR-NKRLKQR----TPGIITIEDVRKNDAGYYTC 194 (326)
T ss_pred CCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccC-CcceEec----CCCeEEEeecChhhCeEEEE
Confidence 3444333344557799999999972 135677899998764 222 2222221 14689999999999999999
Q ss_pred EEEeCCCcce----eEEEEEEEcCCCcc-ccccCCCCCCCCCcEEEEEEeecCCCC---CEEEEEeCCEecCCCCC----
Q psy11132 85 TVRNMVAEDT----QVQRLIVNVPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFP---- 152 (243)
Q Consensus 85 ~~~~~~~~~~----~~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~---- 152 (243)
.+.+..+... ..+.|.|..+...+ ...+....+..|+.+.|.|.+. |.|. +.+.|+++|..+...+.
T Consensus 195 ~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~-g~P~~~~~~v~W~kng~~i~~~~~~~~~ 273 (326)
T PHA02785 195 VLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVS-LRPPTTDADVFWISNGMYYEEDDEDGDG 273 (326)
T ss_pred EEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEE-CCCCCCCceEEEEECCEECCCcCCCCce
Confidence 9999877543 33455554322111 1111224556799999999995 6664 58999999998864321
Q ss_pred -eeEEee----c---cceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132 153 -VNVSDL----D---SFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190 (243)
Q Consensus 153 -~~~~~~----~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 190 (243)
...... + .....|.|.+++.+|.|.|+|.|.|..|...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 274 RISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred eEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 111110 0 1146799999999999999999999885443
No 11
>KOG4222|consensus
Probab=99.88 E-value=9.2e-22 Score=159.69 Aligned_cols=217 Identities=26% Similarity=0.398 Sum_probs=156.7
Q ss_pred cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecC----CCceEEEEeeeeceEEEEee-----cCCCC
Q psy11132 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDN----SAALSITHVDQYNSMLVIDS-----VSARH 78 (243)
Q Consensus 8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~-----~~~~d 78 (243)
.+|.+...+.+..+..|++++|.|.+. +.|+++|.|+|+|..... ..++... +++|.+.. ....|
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~as-G~ppPti~w~k~G~~~~~~e~~shR~~lp-----~gsLf~l~~ahg~~a~~d 103 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKAS-GDPPPTIEWYKDGENVFKGEPGSHRFLLP-----DGSLFLLRLAHGKKAGHD 103 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCC-CCCCCceecccCCcccCCCCCCCcceecC-----CccEEEEecccCCcccCC
Confidence 578888888889999999999999994 888899999999964322 1222211 22233322 12348
Q ss_pred CeeEEEEEEeCCCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132 79 SGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 157 (243)
Q Consensus 79 ~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 157 (243)
.|.|.|++.|..+. .++...|.+...+.-.........+..|+.+.|.|.-..|.|.+.+.|.|+|..+.........
T Consensus 104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~- 182 (1281)
T KOG4222|consen 104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA- 182 (1281)
T ss_pred CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE-
Confidence 89999999998886 4666667766544332222222566789999999998889999999999999988722211111
Q ss_pred eccceeEEEEeecCCCCCeeEEEEEEccCcceee-eEEEEEEeecCCCCCeeeeeccceeeeccCcccc---------cc
Q psy11132 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF---------EQ 227 (243)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~---------~~ 227 (243)
....+.|.|.++...|.|.|.|+++|..|.... ..+++|. ++|.+...+++.++..+....| +.
T Consensus 183 -lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~-----e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~ 256 (1281)
T KOG4222|consen 183 -LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ-----EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPT 256 (1281)
T ss_pred -EecCCcEEEeccccCCCceeeeeecccccccccccceeeec-----cCCccccccccceeecccccccccccCCCCCCc
Confidence 112467999999999999999999999998754 5889998 7777777777666666655555 37
Q ss_pred cceEEeCCee
Q psy11132 228 DSWMIDNENY 237 (243)
Q Consensus 228 ~~W~~~~~~~ 237 (243)
+.|.+++..+
T Consensus 257 Vrwkk~~~~~ 266 (1281)
T KOG4222|consen 257 VRWKKDDPSL 266 (1281)
T ss_pred eeeeccCCCC
Confidence 8998877554
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.81 E-value=8.4e-19 Score=108.41 Aligned_cols=96 Identities=24% Similarity=0.442 Sum_probs=82.7
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM 89 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 89 (243)
|.|...+....+..|+.+.|.|.+. |.|.+.+.|+|++..+....++.+.... ..+.|.|.++.++|+|.|+|.+.|.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~-G~p~p~v~W~kdg~~l~~~~~~~~~~~~-~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVT-GTQPITCTWMKFRKQIQEGEGIKIENTE-NSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEc-ccCCCceEEEECCEEecCCCcEEEEecC-CeeEEEECCCChhhCEEEEEEEEcC
Confidence 5666677888899999999999995 8899999999999999876666554433 3578999999999999999999999
Q ss_pred CCcceeEEEEEEEcCCCc
Q psy11132 90 VAEDTQVQRLIVNVPPKI 107 (243)
Q Consensus 90 ~~~~~~~~~l~v~~~p~~ 107 (243)
.|.....+.|.|.+.|..
T Consensus 79 ~G~~~~~~~l~V~~~P~p 96 (98)
T cd05762 79 LGSRQAQVNLTVVDKPDP 96 (98)
T ss_pred CCceeEEEEEEEecCCCC
Confidence 999999999999988754
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.75 E-value=2.6e-17 Score=101.75 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=72.5
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+..|+.+.|.|.+ .|.|++.+.|++++..+.......... ....+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 10 ~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~-~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~ 87 (98)
T cd05762 10 MKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIEN-TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVN 87 (98)
T ss_pred EEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEe-cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEE
Confidence 567899999999999 699999999999999997655443332 233578999999999999999999999999999999
Q ss_pred EEEEeec
Q psy11132 195 LQVKGNL 201 (243)
Q Consensus 195 l~v~~~~ 201 (243)
|.|.+.+
T Consensus 88 l~V~~~P 94 (98)
T cd05762 88 LTVVDKP 94 (98)
T ss_pred EEEecCC
Confidence 9998554
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.75 E-value=1.6e-17 Score=100.81 Aligned_cols=87 Identities=22% Similarity=0.389 Sum_probs=73.5
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
||.+...+.+..+.+|+.+.|.|.+. |.|.+.++|++++..+....+... .+..|.|.+++.+|+|.|+|.|.|
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~-G~P~P~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N 74 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFAL-GNPVPVIRWRKILEPMPATAEISM-----SGAVLKIFNIQPEDEGTYECEAEN 74 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEec-ccCCCEEEEEECCcCCCCCCEEec-----CCCEEEECcCChhhCEEEEEEEEc
Confidence 67888888888899999999999995 889999999999987765433221 245799999999999999999999
Q ss_pred CCCcceeEEEEEE
Q psy11132 89 MVAEDTQVQRLIV 101 (243)
Q Consensus 89 ~~~~~~~~~~l~v 101 (243)
..|.....+.|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd05851 75 IKGKDKHQARVYV 87 (88)
T ss_pred CCCceEEEEEEEE
Confidence 9999888888776
No 15
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.73 E-value=9.8e-17 Score=98.40 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=70.0
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 95 (243)
++...+.+|+++.|.|.+. +.|.+.+.|++++..+....++.+.........|.|.+++.+|+|.|+|.+.|..|....
T Consensus 8 p~~v~v~~G~~v~L~C~v~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVF-GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEE-ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 4566789999999999995 888899999999999877666555433222467999999999999999999999998887
Q ss_pred EEEEEE
Q psy11132 96 VQRLIV 101 (243)
Q Consensus 96 ~~~l~v 101 (243)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 776653
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.72 E-value=1.3e-16 Score=97.93 Aligned_cols=90 Identities=26% Similarity=0.488 Sum_probs=75.9
Q ss_pred cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
.||.+...+....+.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+.... ..+.|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVD-GEPAPTVTWMREGQIIVSSQRHQITSTE-YKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEe-ecCCCEEEEEECCEECCCCCcEEEEEcC-CeeEEEECCCCcccCEeEEEEEE
Confidence 578888888899999999999999995 8888899999999988776665544322 25789999999999999999999
Q ss_pred eCCCcceeEEEE
Q psy11132 88 NMVAEDTQVQRL 99 (243)
Q Consensus 88 ~~~~~~~~~~~l 99 (243)
|..|.....+.|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999987776655
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.72 E-value=1.6e-16 Score=98.29 Aligned_cols=85 Identities=26% Similarity=0.373 Sum_probs=69.6
Q ss_pred CCcccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 17 PERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
....+.+|+++.|.|.+. + .|++.+.|+|+|.++...........+ ...+.|.|..+..+|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~-g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVE-AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEE-ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 456788999999999996 6 888899999999999764443322221 2357899999999999999999999999
Q ss_pred cceeEEEEEEE
Q psy11132 92 EDTQVQRLIVN 102 (243)
Q Consensus 92 ~~~~~~~l~v~ 102 (243)
..+..+.|.|.
T Consensus 90 ~~~~t~~L~V~ 100 (101)
T cd04975 90 SKSLTFELYVN 100 (101)
T ss_pred cEEEEEEEEEE
Confidence 98888888875
No 18
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.71 E-value=1.7e-16 Score=98.25 Aligned_cols=83 Identities=24% Similarity=0.366 Sum_probs=68.6
Q ss_pred CCCCCCCcEEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeEEee----ccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 115 DGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
..+..|+++.|.|.+ .| .|+|.+.|+|+|..+........... ....+.|.|..+..+|+|.|+|.|.|..|..
T Consensus 13 ~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 13 IFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 456789999999999 57 89999999999999986544333222 1235789999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy11132 190 RYSSKLQVK 198 (243)
Q Consensus 190 ~~~~~l~v~ 198 (243)
+.++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 998888876
No 19
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.71 E-value=1.7e-16 Score=97.39 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=68.0
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|+++.|.|.+ .|.|.|.+.|++++..+.................|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 11 v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 11 VTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred EEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 456789999999999 5999999999999999876655444333233467999999999999999999999999888877
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
+.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 764
No 20
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.71 E-value=2.8e-16 Score=94.79 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=65.9
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
.+..|+.+.|.|.+ .|.|.|.+.|++++..+...............+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 6 ~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 6 VVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEEcCCEEEEEeeE-eecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 45789999999999 69999999999999988754322222222335789999999999999999999999998888877
Q ss_pred EE
Q psy11132 196 QV 197 (243)
Q Consensus 196 ~v 197 (243)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 64
No 21
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.71 E-value=1.5e-16 Score=97.54 Aligned_cols=90 Identities=31% Similarity=0.542 Sum_probs=77.2
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM 89 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 89 (243)
|.|...+.+..+.+|+++.|.|.+. +.|.+.+.|++++..+....+..+.... ..+.|.|.+++.+|+|.|+|.+.+.
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVS-GNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEE-ESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEE-eCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEEC
Confidence 4556667788899999999999996 6688899999999999987777765544 4789999999999999999999999
Q ss_pred CCcceeEEEEEE
Q psy11132 90 VAEDTQVQRLIV 101 (243)
Q Consensus 90 ~~~~~~~~~l~v 101 (243)
.+.....+.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 888888877765
No 22
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.71 E-value=2.2e-16 Score=92.26 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=59.9
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+... .++...........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 4789999 69999999999999998743 33333333333357999999999999999999999999988888764
No 23
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.6e-16 Score=96.37 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=64.5
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|+.+.|.|.+ .|.|.|.++|++++..+....... .....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 11 ~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 84 (88)
T cd05851 11 TYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPATAEIS-----MSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQAR 84 (88)
T ss_pred EEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCCCCEEe-----cCCCEEEECcCChhhCEEEEEEEEcCCCceEEEEE
Confidence 556789999999999 699999999999998776542221 12357999999999999999999999999988888
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 85 l~V 87 (88)
T cd05851 85 VYV 87 (88)
T ss_pred EEE
Confidence 876
No 24
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.70 E-value=4.7e-16 Score=93.76 Aligned_cols=82 Identities=22% Similarity=0.339 Sum_probs=67.7
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV 96 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 96 (243)
.+.+.+|+.+.|.|.+. |.|.|.+.|++++.++... .++.+.... ..+.|.|.++.++|+|.|+|.+.|..|.....
T Consensus 4 ~~~v~~G~~v~l~c~~~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPIS-GEPAPTVTWSRGDKAFTETEGRVRVESYK-DLSSFVIEGAEREDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred EEEEEcCCEEEEEeeEe-ecCCCeEEEEECCEECccCCCeEEEEEcC-CeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence 46688999999999995 8899999999999998753 344443322 25789999999999999999999999998877
Q ss_pred EEEEE
Q psy11132 97 QRLIV 101 (243)
Q Consensus 97 ~~l~v 101 (243)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05894 82 LFVKV 86 (86)
T ss_pred EEEEC
Confidence 77654
No 25
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.70 E-value=4e-16 Score=95.77 Aligned_cols=87 Identities=24% Similarity=0.493 Sum_probs=67.0
Q ss_pred CCCCCcccccCCeEEEEEEeeCCCC-CceeEEEE-CCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 14 PTNPERTLNVGERASLICSITKGDI-PLTIKWLK-DGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 14 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
+.+....+.+|+++.|.|.+. +.| ++.++|++ ++..+.. ..++.+.......++|.|.+++.+|+|.|+|.|.|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~-G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVA-GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EeCCccEECCCCeEEEEEEEe-CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 445666788999999999996 676 47999998 7766654 3344443333335789999999999999999999986
Q ss_pred -CcceeEEEEEE
Q psy11132 91 -AEDTQVQRLIV 101 (243)
Q Consensus 91 -~~~~~~~~l~v 101 (243)
+....++.|.|
T Consensus 84 ~g~~~~s~~l~v 95 (96)
T cd05865 84 EGESEATVNVKI 95 (96)
T ss_pred CCcEEEEEEEEE
Confidence 77777777765
No 26
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.70 E-value=2.2e-16 Score=92.77 Aligned_cols=74 Identities=32% Similarity=0.491 Sum_probs=62.3
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+|+.+.|.|.+ .|.|.|.++|++++..+......... ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVL----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEc----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58999999999 69999999999999988754433221 2457999999999999999999999999988887764
No 27
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=3.4e-16 Score=91.16 Aligned_cols=73 Identities=26% Similarity=0.454 Sum_probs=61.5
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+.+.|.|.+ .|.|.|.+.|++++..+....++.... .+.|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 6789999999 689999999999998876554443322 357999999999999999999999999998888764
No 28
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.68 E-value=3.8e-16 Score=91.75 Aligned_cols=74 Identities=26% Similarity=0.468 Sum_probs=62.1
Q ss_pred cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+|+.+.|.|.+ .+.|.+.+.|+|++..+....+.... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVL----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEc----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 68999999999 48899999999999988765443322 2468999999999999999999999999888777754
No 29
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.68 E-value=1.8e-15 Score=91.76 Aligned_cols=82 Identities=26% Similarity=0.538 Sum_probs=67.1
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEee---eeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
|+.++|.|.+. +.|++.+.|++++..+... .++.+.... ...+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~~-g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAH-GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEE-CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 78999999995 7888899999999887543 344333211 223689999999999999999999999999999999
Q ss_pred EEEcCCC
Q psy11132 100 IVNVPPK 106 (243)
Q Consensus 100 ~v~~~p~ 106 (243)
.|..+|.
T Consensus 80 ~V~~~P~ 86 (88)
T cd05735 80 TVQEPPD 86 (88)
T ss_pred EEeCCCC
Confidence 9988765
No 30
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.68 E-value=6.8e-16 Score=90.20 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=60.1
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecC-CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDN-SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. |.|.|.+.|+|++..+.. ..++.+.....+..+|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~-G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQIS-AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEE-ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999995 889999999999998874 345544433333458999999999999999999999999888877764
No 31
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.67 E-value=7e-16 Score=95.63 Aligned_cols=83 Identities=27% Similarity=0.378 Sum_probs=68.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-----ccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-----DSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
..+..|+.+.|.|.+ .|+|+|.+.|+|+|.++........... ....+.|.|..+..+|+|.|+|.|.|..|..
T Consensus 13 ~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 13 EFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 446679999999999 6999999999999999886544322211 1234789999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy11132 190 RYSSKLQVK 198 (243)
Q Consensus 190 ~~~~~l~v~ 198 (243)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 988888875
No 32
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.67 E-value=1.6e-15 Score=91.79 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=65.2
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
.+..|+.+.|.|.+ .|.|.+.+.|+++|..+.................|.|..+..+|+|.|+|.|.|..|....++.|
T Consensus 5 ~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 5 AVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 46789999999999 68999999999999988755432211111224578999999999999999999999999888887
Q ss_pred EE
Q psy11132 196 QV 197 (243)
Q Consensus 196 ~v 197 (243)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.67 E-value=1.4e-15 Score=93.39 Aligned_cols=82 Identities=26% Similarity=0.553 Sum_probs=63.9
Q ss_pred CCCCCCCcEEEEEEeecCCC-CCEEEEEe-CCEecCC-CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC-ccee
Q psy11132 115 DGLPEGARTRVICGVTHGDP-PLTIRWLK-DGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQAR 190 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~ 190 (243)
..+..|+++.|.|.+ .|.| +|.++|++ ++..+.. ..+......+...+.|.|.++..+|+|.|+|.|.|.. |...
T Consensus 10 ~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 10 GEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred cEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 456789999999999 5888 57999998 7766654 2223333333345789999999999999999999996 8888
Q ss_pred eeEEEEE
Q psy11132 191 YSSKLQV 197 (243)
Q Consensus 191 ~~~~l~v 197 (243)
.++.|.|
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 8888776
No 34
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.67 E-value=1e-15 Score=93.21 Aligned_cols=87 Identities=25% Similarity=0.402 Sum_probs=70.8
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
||.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.+.|
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~-g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N 74 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFAL-GNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAEN 74 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEee-EeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEE
Confidence 45566667778899999999999994 88888999999887665433221 2257899999999999999999999
Q ss_pred CCCcceeEEEEEE
Q psy11132 89 MVAEDTQVQRLIV 101 (243)
Q Consensus 89 ~~~~~~~~~~l~v 101 (243)
..|.......|.|
T Consensus 75 ~~G~~~~~~~l~V 87 (88)
T cd04968 75 IKGKDTHQGRIYV 87 (88)
T ss_pred CCCcEEEEEEEEE
Confidence 9999887777766
No 35
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=7.6e-16 Score=89.70 Aligned_cols=73 Identities=23% Similarity=0.360 Sum_probs=62.0
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+.+.|.|.+. +.|.+.+.|+|++..+....++.+.. +..|.|.+++.+|.|.|+|.|.|..|.......|.|
T Consensus 1 G~~~~l~C~~~-g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK-AAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc-eeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999995 88889999999998887666655432 467999999999999999999999999888777754
No 36
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.67 E-value=3.5e-15 Score=90.44 Aligned_cols=79 Identities=29% Similarity=0.511 Sum_probs=64.6
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCC-CeeEEe---eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSD---LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
|+.+.|.|.+ .|.|++.+.|++++..+.... .+.... .....+.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 7889999999 589999999999998886432 232222 12234789999999999999999999999999999999
Q ss_pred EEEe
Q psy11132 196 QVKG 199 (243)
Q Consensus 196 ~v~~ 199 (243)
.|.+
T Consensus 80 ~V~~ 83 (88)
T cd05735 80 TVQE 83 (88)
T ss_pred EEeC
Confidence 9984
No 37
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.67 E-value=1.2e-15 Score=92.03 Aligned_cols=83 Identities=22% Similarity=0.375 Sum_probs=68.9
Q ss_pred cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+....++... ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus 3 ~~~p~~~~~~~G~~~~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 3 LKVISDTEADIGSSLRWECKAS-GNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred cccCCccEEcCCCcEEEEEEee-EeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence 3446677899999999999995 8888899999999988765554432 457999999999999999999999998
Q ss_pred ceeEEEEEE
Q psy11132 93 DTQVQRLIV 101 (243)
Q Consensus 93 ~~~~~~l~v 101 (243)
...++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 877776653
No 38
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.67 E-value=1.1e-15 Score=89.50 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=59.0
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCC-eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+..... ............|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 4789999 6999999999999998875433 222222222347999999999999999999999999988888764
No 39
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.66 E-value=7.8e-16 Score=87.46 Aligned_cols=66 Identities=32% Similarity=0.448 Sum_probs=56.2
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
+.|.|.+ .|.|.|.++|+|+|..+... ...+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4689999 69999999999999988632 124689999999999999999999999988777777664
No 40
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.66 E-value=1.3e-15 Score=90.66 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=63.9
Q ss_pred CeEEEEEEeeC-CCCCceeEEEECCeeecC---CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132 25 ERASLICSITK-GDIPLTIKWLKDGRYLDN---SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100 (243)
Q Consensus 25 ~~~~l~C~~~~-~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 100 (243)
+++.|.|.+.. +.+++.+.|+++|..+.. ..++.........+.|.|.+++..|+|.|+|.|.+..+..+....|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 47899999963 455779999999999863 22332221112356899999999999999999999999999999999
Q ss_pred EEcCC
Q psy11132 101 VNVPP 105 (243)
Q Consensus 101 v~~~p 105 (243)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99876
No 41
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.66 E-value=2.3e-15 Score=92.11 Aligned_cols=86 Identities=23% Similarity=0.348 Sum_probs=69.0
Q ss_pred CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132 15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 94 (243)
.|..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+....++..........+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~-g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVF-GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEE-EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 35567789999999999985 77888999999999887666554433222235799999999999999999999999888
Q ss_pred eEEEEEE
Q psy11132 95 QVQRLIV 101 (243)
Q Consensus 95 ~~~~l~v 101 (243)
..+.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 7776653
No 42
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.66 E-value=2.5e-15 Score=88.24 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=59.1
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCC-CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+... ..............|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRV-SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEE-eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 4789999 69999999999999998743 23333222223457999999999999999999999999988887764
No 43
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.66 E-value=2.5e-15 Score=92.88 Aligned_cols=91 Identities=25% Similarity=0.439 Sum_probs=71.8
Q ss_pred CCCccCCC--CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132 9 PPKLSPTN--PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 9 ~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
||.+...+ .+..+.+|+.+.|.|.+. |.|.+.+.|+++|..+... .++.. ....+.|.|.+++.+|+|.|+|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~ 76 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDAD-GFPEPTMTWTKDGEPIESGEEKYSF---NEDGSEMTILDVDKLDEAEYTCI 76 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEecc-EeCCCEEEEEECCEECcCCCCEEEE---eCCCCEEEECCCChhhCEEEEEE
Confidence 56666543 345688999999999995 8888999999999988664 22222 12245799999999999999999
Q ss_pred EEeCCCcceeEEEEEEEc
Q psy11132 86 VRNMVAEDTQVQRLIVNV 103 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~v~~ 103 (243)
+.|..|.....+.|.|..
T Consensus 77 a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 77 AENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEcCCCeEEEEEEEEEEe
Confidence 999999988888888753
No 44
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.66 E-value=3.6e-15 Score=98.77 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=83.2
Q ss_pred EEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEe
Q psy11132 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP 146 (243)
Q Consensus 68 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~ 146 (243)
+|+|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.+...+.. .....|+.+.|.|.+.+.+|+ +.+.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 6899999999999999999988788888889999988887655432 233368899999999644564 59999999864
Q ss_pred cCC----CCCee----EEeecc---ceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 147 LSP----RFPVN----VSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 147 ~~~----~~~~~----~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
... ..... ....++ ..+.|.+..-..++.+.|+|.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 221 01111 111111 135566665445556799999988654
No 45
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.65 E-value=3.2e-15 Score=90.47 Aligned_cols=82 Identities=23% Similarity=0.445 Sum_probs=65.3
Q ss_pred cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR 98 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 98 (243)
..+.+|+.+.|.|.+. +.|.+.+.|+|++..+....+............|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus 4 ~~v~~G~~~~L~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAA-GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcC-CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 3578899999999995 788889999999998876544321111223567999999999999999999999999888877
Q ss_pred EEE
Q psy11132 99 LIV 101 (243)
Q Consensus 99 l~v 101 (243)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 764
No 46
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.65 E-value=3.4e-15 Score=91.60 Aligned_cols=89 Identities=24% Similarity=0.477 Sum_probs=69.9
Q ss_pred CCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183 (243)
Q Consensus 104 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 183 (243)
+|.+...+ ....+..|+.+.|.|.+ .|.|.+.+.|+++|..+.......... ....+.|.|.++..+|+|.|+|.|.
T Consensus 3 ~~~~~~~p-~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 3 PATILTKP-RSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSSQRHQITS-TEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCcccccC-ccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCCCCcEEEEE-cCCeeEEEECCCCcccCEeEEEEEE
Confidence 34444333 23667899999999999 699999999999999887654444332 2335789999999999999999999
Q ss_pred ccCcceeeeEEE
Q psy11132 184 NTAAQARYSSKL 195 (243)
Q Consensus 184 n~~g~~~~~~~l 195 (243)
|..|....++.|
T Consensus 80 N~~G~~~~~~~l 91 (92)
T cd05747 80 NSEGKQEAQFTL 91 (92)
T ss_pred cCCCCEeEEEEe
Confidence 999998877765
No 47
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.65 E-value=2.7e-15 Score=89.30 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=61.6
Q ss_pred CcEEEEEEeec-CCCCCEEEEEeCCEecCCC--C-CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132 121 ARTRVICGVTH-GDPPLTIRWLKDGKPLSPR--F-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196 (243)
Q Consensus 121 ~~~~l~C~~~~-~~p~~~~~W~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~ 196 (243)
+++.|.|.+.. +.+++.+.|+++|..+... . .+.........+.|.|.+++..|+|.|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 46889999953 4558899999999999632 1 222221112356899999999999999999999999999999999
Q ss_pred EE
Q psy11132 197 VK 198 (243)
Q Consensus 197 v~ 198 (243)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 99
No 48
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.65 E-value=1.7e-15 Score=93.87 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=68.5
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe-----eeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-----DQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
...+..|+.+.|.|.+. +.|+|.+.|+|+|.++....+...... ....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~-g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVE-AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEE-EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 45678899999999995 889999999999999876554322211 122468999999999999999999999999
Q ss_pred ceeEEEEEEE
Q psy11132 93 DTQVQRLIVN 102 (243)
Q Consensus 93 ~~~~~~l~v~ 102 (243)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888875
No 49
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.65 E-value=3.5e-15 Score=91.29 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=67.0
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|+.+.|.|.+ .|.|.+.+.|++++..+.....+.........+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 11 v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 11 VTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 557899999999999 5889999999999998876544433322333457999999999999999999999999988887
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
+.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 764
No 50
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=3.3e-15 Score=88.21 Aligned_cols=75 Identities=25% Similarity=0.434 Sum_probs=60.9
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+.+.|.|.+ .|.|.|.++|+++|..+.......... ...+.|.|.+++.+|+|.|.|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRH--VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEE--eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 7889999999 699999999999999887543211111 12467999999999999999999999999888888776
No 51
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=7.6e-15 Score=88.30 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=62.4
Q ss_pred CeEEEEEEeeCCCCCc--eeEEEECCeeecCCC---ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 25 ERASLICSITKGDIPL--TIKWLKDGRYLDNSA---ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 25 ~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
+.+.|.|.+. +.|.+ .+.|++++..+.... ++.........+.|.|.+++..|+|.|+|.|.|..+..+..+.|
T Consensus 1 ~~~~L~C~a~-g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHAS-HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEEe-cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 4689999996 66665 689999998875422 22221222224689999999999999999999999999999999
Q ss_pred EEEcCC
Q psy11132 100 IVNVPP 105 (243)
Q Consensus 100 ~v~~~p 105 (243)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998765
No 52
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=6.7e-15 Score=89.90 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=65.6
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+..|+.+.|.|.+ .|.|.|.+.|++++..+....... .........|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 10 ~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~ 87 (90)
T cd04972 10 TVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDT-LETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQ 87 (90)
T ss_pred EEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEE-EEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEE
Confidence 346789999999999 599999999999999876543321 112233568999999999999999999999999888887
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 88 L~v 90 (90)
T cd04972 88 VTV 90 (90)
T ss_pred EeC
Confidence 764
No 53
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.64 E-value=2.3e-15 Score=85.54 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=55.6
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
+.|.|.+. +.|.|.+.|+|+|..+.... ..+.|.|.++..+|+|.|+|.|.|..|..+.++.+.+.
T Consensus 1 ~~l~c~v~-g~P~P~v~W~kdg~~l~~~~---------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVA-AYPPPEFQWYKDGKLISGKH---------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEE-EeCCCEEEEEECCEECcccC---------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999995 88999999999999886321 25689999999999999999999999987777776653
No 54
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=1.1e-14 Score=87.65 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=60.8
Q ss_pred CcEEEEEEeecCCCCC--EEEEEeCCEecCCCC---CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 121 ARTRVICGVTHGDPPL--TIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 121 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
+++.|.|.+ .|.|.+ .+.|++++..+.... .+.........+.|.|.+++..|+|.|+|.|.|..|...+++.|
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 468999999 588865 689999998875432 12111122234689999999999999999999999999999999
Q ss_pred EEE
Q psy11132 196 QVK 198 (243)
Q Consensus 196 ~v~ 198 (243)
.|.
T Consensus 80 ~V~ 82 (85)
T cd05854 80 VVR 82 (85)
T ss_pred EEE
Confidence 998
No 55
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.64 E-value=4.4e-15 Score=86.36 Aligned_cols=71 Identities=24% Similarity=0.492 Sum_probs=58.1
Q ss_pred cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
.+.|.|.+ .|.|.|.++|++++..+.......... ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVK----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEe----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899999 699999999999999887654433322 245788899999999999999999999988888764
No 56
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.64 E-value=4.8e-15 Score=91.82 Aligned_cols=91 Identities=23% Similarity=0.449 Sum_probs=69.3
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-----ceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-----ALSITHVDQYNSMLVIDSVSARHSGNYS 83 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 83 (243)
.|+|...+....+..|+.+.|.|.+. |.|.+.+.|++++..+.... ++.+.. ....+.|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~-G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~-~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEAS-GDPIPSITWRTSTRNISSEEKTLDGHIVVRS-HARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEee-EeCCCEEEEEECCccccCCccccCccEEEEc-CccEEEEEEecCccCcCEEEE
Confidence 56776666555566689999999995 88889999999987764321 222221 112368999999999999999
Q ss_pred EEEEeCCCcceeEEEEEE
Q psy11132 84 CTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 84 C~~~~~~~~~~~~~~l~v 101 (243)
|.|.|..|..+..+.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999888877764
No 57
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.63 E-value=8.2e-15 Score=89.51 Aligned_cols=84 Identities=14% Similarity=0.265 Sum_probs=66.5
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 95 (243)
+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+.......... ......|.|.+++.+|.|.|+|.|.|..|....
T Consensus 7 p~~~~v~~G~~v~l~C~~~-G~P~p~v~W~~~g~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 7 PNATVVYEGGTATIRCTAE-GSPLPKVEWIIAGLIVIQTRTDTLET-TVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred CcCEEEcCCCcEEEEEEEE-EcCCCeEEEEECCEEccCCccEEEEe-cCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 3445588999999999996 88999999999998876544322221 122468999999999999999999999998887
Q ss_pred EEEEEE
Q psy11132 96 VQRLIV 101 (243)
Q Consensus 96 ~~~l~v 101 (243)
.+.|.|
T Consensus 85 ~~~L~v 90 (90)
T cd04972 85 SVQVTV 90 (90)
T ss_pred EEEEeC
Confidence 777653
No 58
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.63 E-value=8.1e-15 Score=86.16 Aligned_cols=74 Identities=30% Similarity=0.458 Sum_probs=60.8
Q ss_pred cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
.+.|.|.+ .|.|.|.+.|+++|..+......... .....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLSGRVQIE-TTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcCCCCeEEEE-ECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 36899999 69999999999999998655443332 2334678999999999999999999999999888887764
No 59
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.63 E-value=4.9e-15 Score=89.39 Aligned_cols=77 Identities=34% Similarity=0.563 Sum_probs=65.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+..|+.+.|.|.+ .|.|.|.+.|++++..+......... ...|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 9 ~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05728 9 TEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE 82 (85)
T ss_pred cEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence 567889999999999 69999999999999988765433321 357999999999999999999999999888887
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 83 l~V 85 (85)
T cd05728 83 LAV 85 (85)
T ss_pred EEC
Confidence 764
No 60
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=3.7e-15 Score=87.28 Aligned_cols=73 Identities=27% Similarity=0.419 Sum_probs=61.3
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+.+.|.|.+ .|.|.+.+.|++++..+......... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLTNSSRICIW----PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEcccCCCEEEC----CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 6889999999 68999999999999988755444322 1356999999999999999999999999988888764
No 61
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.63 E-value=2e-15 Score=92.51 Aligned_cols=81 Identities=37% Similarity=0.633 Sum_probs=70.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|+++.|.|.+ .+.|.+.+.|++++..+............ ..+.|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus 10 ~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~ 87 (90)
T PF07679_consen 10 VTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGEATASVN 87 (90)
T ss_dssp EEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEE
Confidence 556789999999999 57899999999999999886666654444 6789999999999999999999999999988888
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 88 l~V 90 (90)
T PF07679_consen 88 LTV 90 (90)
T ss_dssp EEE
T ss_pred EEC
Confidence 875
No 62
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.63 E-value=6.1e-15 Score=86.88 Aligned_cols=75 Identities=25% Similarity=0.444 Sum_probs=60.6
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+.+.|.|.+ .|.|.|+++|+++|..+...........+ ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~--~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVD--GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEec--CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999 69999999999999988643221111111 347889999999999999999999999999988876
No 63
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=6.9e-15 Score=89.85 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=64.9
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecC--------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 191 (243)
|+.+.|.|.+ .|.|.|.+.|++++..+. ....+.. ...+.|.|.++..+|+|.|.|.|.|..|....
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV----SQTGDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEE----CCCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 6889999999 699999999999876431 1111111 11356999999999999999999999999999
Q ss_pred eEEEEEEeecCCCCC
Q psy11132 192 SSKLQVKGNLNRLPP 206 (243)
Q Consensus 192 ~~~l~v~~~~~~~~p 206 (243)
.+.|.|.+.....||
T Consensus 76 ~~~l~V~~~~~~~~~ 90 (90)
T cd05726 76 KAYLEVTDVIADRPP 90 (90)
T ss_pred EEEEEEeecccCCCC
Confidence 999999976665665
No 64
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.63 E-value=5.2e-15 Score=86.77 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=57.3
Q ss_pred EEEEEeecCCCCCEEEEEeCCEecCCCCCeeE----EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV----SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196 (243)
Q Consensus 124 ~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~ 196 (243)
.|.|.+ .|.|.|+++|+++|..+........ .......+.|.|.++..+|+|.|+|.|.|..|..++++.+.
T Consensus 2 ~i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 377899 6999999999999999986543221 11122356899999999999999999999999988777654
No 65
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=7.1e-15 Score=91.24 Aligned_cols=90 Identities=20% Similarity=0.352 Sum_probs=67.9
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEEC--CeeecC-----CCceEEEEeeeeceEEEEeecCCCCCee
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD--GRYLDN-----SAALSITHVDQYNSMLVIDSVSARHSGN 81 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 81 (243)
+|.+.. +.+..+.+|+.++|.|.+. +.|.+.+.|+++ +..+.. ..++.+.. ......|.|.+++.+|+|.
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~-G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-~~~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAE-GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-QHGESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecc-cCCCCeEEEEECCCCceeccCCcCcCceEEEee-cCCeeEEEEeeCCcCCCEE
Confidence 566654 4578899999999999995 888899999994 444432 12333322 1124689999999999999
Q ss_pred EEEEEEeCCCcceeEEEEEE
Q psy11132 82 YSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 82 Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+|.|.|..|....++.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999998877777654
No 66
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.63 E-value=3.7e-15 Score=87.20 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=59.1
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. |.|.|.+.|+|++..+... .++.+.....+...|.|.+++.+|+|.|+|.|.|..|..+....|.|
T Consensus 1 v~l~C~v~-G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVS-GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEe-EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47999995 8999999999999988653 34444333222347999999999999999999999999888877764
No 67
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.62 E-value=1.8e-14 Score=90.91 Aligned_cols=98 Identities=27% Similarity=0.393 Sum_probs=73.4
Q ss_pred ecCCCccCCCCCccc----ccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEee---eeceEEEEeecC-CC
Q psy11132 7 TVPPKLSPTNPERTL----NVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVD---QYNSMLVIDSVS-AR 77 (243)
Q Consensus 7 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~---~~~~~l~i~~~~-~~ 77 (243)
..+|.+...+....+ ..|+.+.|.|.+. +.|.+.+.|++++..+... .++...... ...+.|+|.+++ .+
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~-G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQ-GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECc-ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 457777766552222 2468999999995 8888999999999988642 333322111 124679999997 58
Q ss_pred CCeeEEEEEEeCCCcceeEEEEEEEcCC
Q psy11132 78 HSGNYSCTVRNMVAEDTQVQRLIVNVPP 105 (243)
Q Consensus 78 d~G~Y~C~~~~~~~~~~~~~~l~v~~~p 105 (243)
|.|.|+|.|.|..|.....+.|.+..+|
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999999988766
No 68
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.62 E-value=8.8e-15 Score=90.44 Aligned_cols=81 Identities=27% Similarity=0.416 Sum_probs=66.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+..|+++.|.|.+ .|.|.+.+.|+++|..+......... ....+.|.|.++..+|.|.|+|.|.|..|....++.
T Consensus 13 ~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 13 ATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred eEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 356789999999999 69999999999999988755222111 122457999999999999999999999999998888
Q ss_pred EEEE
Q psy11132 195 LQVK 198 (243)
Q Consensus 195 l~v~ 198 (243)
|.|.
T Consensus 90 L~V~ 93 (95)
T cd05730 90 LKVF 93 (95)
T ss_pred EEEE
Confidence 8886
No 69
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.62 E-value=8.4e-15 Score=86.45 Aligned_cols=75 Identities=24% Similarity=0.400 Sum_probs=60.0
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+.+.|.|.+. +.|.+.+.|+++|..+........... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~-G~P~p~i~W~k~g~~i~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVE-GIPTPNITWSINGAPIEGTDPDPRRHV--SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEee-EeCCCeEEEEECCEECCCCCCCceEEe--eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 78999999995 888889999999998865322111111 2567999999999999999999999999887777776
No 70
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.62 E-value=6.5e-15 Score=87.16 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=61.9
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+.+.|.|.+ .|.|.|.+.|++++..+........ .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPR--RRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcce--EEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7889999999 6999999999999998875443211 1222467999999999999999999999999988888876
No 71
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.62 E-value=8.8e-15 Score=90.65 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=61.9
Q ss_pred CCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 192 (243)
+..|+.+.|.|.+ .|.|.|.++|++++..+..... ..........+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus 14 ~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 92 (97)
T cd05869 14 MELEEQITLTCEA-SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS 92 (97)
T ss_pred EEcCCCEEEEEEe-eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence 3458999999999 5999999999998876653211 1111122234689999999999999999999999999888
Q ss_pred EEEEE
Q psy11132 193 SKLQV 197 (243)
Q Consensus 193 ~~l~v 197 (243)
+.|.|
T Consensus 93 ~~l~v 97 (97)
T cd05869 93 MYLEV 97 (97)
T ss_pred EEEEC
Confidence 87764
No 72
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.62 E-value=8e-15 Score=86.09 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=59.2
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. |.|.|.+.|+|++..+... .++.+.........|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~L~C~v~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVS-AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEe-ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999995 8899999999999988743 44444333333457999999999999999999999999888777754
No 73
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=9.7e-15 Score=88.85 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=63.6
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|+.+.|.|.+ .|.|.+.+.|++++..+....... .....|.|.+++.+|+|.|.|.|.|..|....++.
T Consensus 11 ~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 84 (88)
T cd04968 11 TYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGR 84 (88)
T ss_pred eEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEE
Confidence 456789999999999 699999999999887665432221 12468999999999999999999999999888888
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 85 l~V 87 (88)
T cd04968 85 IYV 87 (88)
T ss_pred EEE
Confidence 776
No 74
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.61 E-value=8.8e-15 Score=86.93 Aligned_cols=77 Identities=26% Similarity=0.415 Sum_probs=62.2
Q ss_pred CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV 96 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 96 (243)
+...+.+|+.+.|.|.+. +. .+.+.|+|+|.++....++.+. ...|.|.+++.+|+|.|+|.+.|..+.....
T Consensus 2 ~~~~~~~G~~v~l~C~~~-~~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLR-DD-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CcEEecCCCCEEEEEEec-CC-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 456688999999999995 54 4589999999998776555432 3579999999999999999999988877666
Q ss_pred EEEE
Q psy11132 97 QRLI 100 (243)
Q Consensus 97 ~~l~ 100 (243)
+.|.
T Consensus 75 ~~v~ 78 (79)
T cd04973 75 FSVN 78 (79)
T ss_pred EEEe
Confidence 6554
No 75
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=1.3e-14 Score=88.26 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=64.8
Q ss_pred CCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132 15 TNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED 93 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 93 (243)
.+.+..+.+|+.+.|.|.+. |.|. .+.|++ ++..+....++.+... .....|.|.++..+|+|.|+|.|.|..|..
T Consensus 6 ~~~~~~v~~G~~v~l~C~~~-G~P~-~v~W~k~~g~~~~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 6 SLSKVELSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIVSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EecceEEcCCCeEEEEEEEE-EeCC-eEEEEeCCCeEecCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34566789999999999995 7777 899998 4667766556554322 224589999999999999999999998874
Q ss_pred -eeEEEEEE
Q psy11132 94 -TQVQRLIV 101 (243)
Q Consensus 94 -~~~~~l~v 101 (243)
..++.|.+
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 55666654
No 76
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.61 E-value=8e-15 Score=85.87 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=61.4
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+.+.|.|.+. +.|.+.+.|++++..+....++.... ...|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~L~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK-AAPKPTISWSKGTELLTNSSRICIWP----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee-EcCCCEEEEEECCEEcccCCCEEECC----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999984 78888999999999887666554332 457999999999999999999999999888777754
No 77
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.61 E-value=1.5e-14 Score=89.64 Aligned_cols=90 Identities=24% Similarity=0.373 Sum_probs=68.8
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-----ceEEEEeeeeceEEEEeecCCCCCeeEE
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-----ALSITHVDQYNSMLVIDSVSARHSGNYS 83 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 83 (243)
+|.+.. ..+..+.+|+.+.|.|.+. +.|.+.+.|++++..+.... ++... .......|.|.+++.+|+|.|+
T Consensus 2 ~P~i~~-~~~~~~~~g~~v~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKITY-LENQTAVELEQITLTCEAE-GDPIPEITWRRATRNFSEGDKSLDGRIVVR-GHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Ccccee-cCceeEecCCcEEEEEEEe-EcCCCcEEEEECCcccCCCCccccceEEEe-CCccEEEEEECcCCcCcCEEeE
Confidence 577753 4467789999999999995 78888999999986654321 22221 1122468999999999999999
Q ss_pred EEEEeCCCcceeEEEEEE
Q psy11132 84 CTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 84 C~~~~~~~~~~~~~~l~v 101 (243)
|.+.|..|..+.++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999887777654
No 78
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=1.1e-14 Score=85.75 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=60.2
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+.+.|.|.+. |.|.|.|.|+++|.++........... ....|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~-G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRAN-GNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEee-EeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 78899999995 889999999999998864322111111 1357899999999999999999999999888888876
No 79
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.60 E-value=1.7e-14 Score=85.65 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=57.3
Q ss_pred EEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe------eccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196 (243)
Q Consensus 124 ~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~ 196 (243)
.|.|.+ .|.|.|.++|+++|..+.......... .....+.|.|.++..+|+|.|+|.|.|..|..+.++.+.
T Consensus 2 ~i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 368999 699999999999999998654322211 112356799999999999999999999999988877664
No 80
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.60 E-value=1.6e-14 Score=84.91 Aligned_cols=74 Identities=28% Similarity=0.426 Sum_probs=61.1
Q ss_pred eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
.+.|.|.+. |.|.+.+.|+++|..+....+..+.... ....|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPIS-GRPTPTVTWSKDGKPLKLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEe-eeCCCeEEEEECCEEcCCCCeEEEEECC-CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 368999994 8899999999999998666655544322 3678999999999999999999999999888777754
No 81
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.60 E-value=8e-15 Score=85.11 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=57.8
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
+.|.|.+ .|.|.|.+.|+++|..+....... .....|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCCCEEE-----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999 699999999999999987653221 124679999999999999999999999988887777664
No 82
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.60 E-value=1.5e-14 Score=84.15 Aligned_cols=71 Identities=25% Similarity=0.446 Sum_probs=58.5
Q ss_pred eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
++.|.|.+. |.|.+.+.|+|++..+....++.+.. ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~-G~P~p~v~W~k~g~~~~~~~~~~~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVT-GKPTPTVKWVKNGDMVIPSDYFKIVK----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEE-EeCCCEEEEEECCeECCCCCCEEEEe----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999995 88999999999999887665544332 345888899999999999999999999888777754
No 83
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.60 E-value=2.4e-14 Score=89.53 Aligned_cols=92 Identities=25% Similarity=0.432 Sum_probs=65.9
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC----CceEEEEeeeeceEEEE--eecCCCCCeeE
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS----AALSITHVDQYNSMLVI--DSVSARHSGNY 82 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i--~~~~~~d~G~Y 82 (243)
||.+...+.+..+.+|+.+.|.|.+. +.|.+.+.|+|+|..+... ..............+.+ ..++.+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAE-GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCC-cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 67888888888999999999999995 8888899999999988651 11111111111122222 23368999999
Q ss_pred EEEEEeCCCc-ceeEEEEEE
Q psy11132 83 SCTVRNMVAE-DTQVQRLIV 101 (243)
Q Consensus 83 ~C~~~~~~~~-~~~~~~l~v 101 (243)
+|.+.|..|. .+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 666666665
No 84
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.60 E-value=3e-14 Score=86.75 Aligned_cols=80 Identities=23% Similarity=0.421 Sum_probs=63.5
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ce
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DT 94 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~ 94 (243)
+.+..+.+|++++|.|.+. +. .+.+.|++++..+... ++.+. .....|.|.+++++|+|.|+|.|.|..|. .+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~-g~-~p~i~W~kng~~l~~~-~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAE-GQ-ATYIWWVNNGSLLVPP-RLQLS---NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cCccccccCCcEEEEEEeC-CC-CCEEEEEECCEECCCC-CEEEe---CCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 4466899999999999995 66 7899999999887653 33222 12468999999999999999999999987 45
Q ss_pred eEEEEEE
Q psy11132 95 QVQRLIV 101 (243)
Q Consensus 95 ~~~~l~v 101 (243)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 5666665
No 85
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.59 E-value=1.6e-14 Score=85.09 Aligned_cols=74 Identities=28% Similarity=0.445 Sum_probs=55.2
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.++|++++....................|.|.+++.+|+|.|.|.|.|..|....++.|.|
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3689999 6999999999998864322111111111122357899999999999999999999999888888876
No 86
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.59 E-value=2.6e-14 Score=88.57 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=63.7
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC----eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP----VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 190 (243)
..+.+|+.+.|.|.+ .|.|.+.+.|++++..+..... ..........+.|.|.+++.+|+|.|.|.|.|..|...
T Consensus 11 ~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 89 (96)
T cd05732 11 QTAVELEQITLTCEA-EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ 89 (96)
T ss_pred eeEecCCcEEEEEEE-eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence 567889999999999 5899999999999866543211 11111222356899999999999999999999999988
Q ss_pred eeEEEEE
Q psy11132 191 YSSKLQV 197 (243)
Q Consensus 191 ~~~~l~v 197 (243)
.++.|.|
T Consensus 90 ~s~~l~v 96 (96)
T cd05732 90 QSMYLEV 96 (96)
T ss_pred EEEEEeC
Confidence 8877754
No 87
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=7.9e-15 Score=84.82 Aligned_cols=68 Identities=37% Similarity=0.598 Sum_probs=56.5
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
+.|.|.+ .|.|.|.+.|++++..+.......... .+.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 4789999 699999999999999887554433321 3579999999999999999999999998877765
No 88
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.59 E-value=1.1e-14 Score=84.74 Aligned_cols=70 Identities=27% Similarity=0.434 Sum_probs=56.9
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+...... .......|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSPNRTK----KLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCCCcee----EEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4689999 69999999999998876543211 1123468999999999999999999999999888888776
No 89
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.59 E-value=2.7e-14 Score=86.24 Aligned_cols=77 Identities=25% Similarity=0.382 Sum_probs=60.6
Q ss_pred CcEEEEEEeecCCCCC--EEEEEeCCEecCCCCC---eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 121 ARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFP---VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 121 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
+++.|.|.+ .|.|.+ .+.|+++|..+..... +.........+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468999999 588866 6799999998764321 1111112235789999999999999999999999999999999
Q ss_pred EEE
Q psy11132 196 QVK 198 (243)
Q Consensus 196 ~v~ 198 (243)
.|.
T Consensus 80 ~V~ 82 (85)
T cd04970 80 IVR 82 (85)
T ss_pred EEE
Confidence 998
No 90
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.59 E-value=2.4e-14 Score=87.63 Aligned_cols=85 Identities=21% Similarity=0.438 Sum_probs=63.3
Q ss_pred CCCCCcccccCCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
..+....+.+|+.+.|.|.+. +.|+ .+.|++ ++..+....+..........+.|+|.+++.+|+|.|+|.+.|..+.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~-G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVI-GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EecCcEEECCCCeEEEEEEeE-eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 345567789999999999996 6665 999998 5666655444444333334578999999999999999999998654
Q ss_pred -ceeEEEEE
Q psy11132 93 -DTQVQRLI 100 (243)
Q Consensus 93 -~~~~~~l~ 100 (243)
...++.|.
T Consensus 83 ~~~~sv~l~ 91 (92)
T cd04977 83 ESEATVNLK 91 (92)
T ss_pred cceeEEEEE
Confidence 55566554
No 91
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.59 E-value=3.5e-14 Score=84.21 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=60.8
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+++.|.|.+ .|.|.|.+.|++++..+....+..... ....+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDSARVSITS-EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCCCCCEEEEE-CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 6889999999 599999999999998877654433322 233578999999999999999999999998766655443
No 92
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.59 E-value=1.1e-14 Score=83.76 Aligned_cols=69 Identities=22% Similarity=0.412 Sum_probs=56.0
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
+.|.|.+ .|.|.|.+.|+++|..+...... .....|.|.++..+|+|.|+|.|.|..|..+...++.+.
T Consensus 1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~~~~------~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKY-YGYPPPEVKWYKNGQLIVLNHTF------KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCCCEE------ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 3689999 69999999999999998764321 113579999999999999999999999987766666553
No 93
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.59 E-value=3.5e-14 Score=86.18 Aligned_cols=81 Identities=32% Similarity=0.548 Sum_probs=63.1
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc-
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED- 93 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~- 93 (243)
+....+.+|+++.|.|.+..+.|.+.+.|++++..+... .+..... ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 78 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD----DGNLLIAEARKSDEGTYKCVATNMVGERE 78 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc----CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence 456778899999999997457888899999999887653 3332221 4679999999999999999999998864
Q ss_pred eeEEEEE
Q psy11132 94 TQVQRLI 100 (243)
Q Consensus 94 ~~~~~l~ 100 (243)
+..+.|.
T Consensus 79 s~~~~l~ 85 (86)
T cd05724 79 SAAARLS 85 (86)
T ss_pred eeeEEEE
Confidence 4444443
No 94
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=4.3e-14 Score=85.37 Aligned_cols=80 Identities=29% Similarity=0.469 Sum_probs=61.9
Q ss_pred CeEEEEEEeeCCCCCc--eeEEEECCeeecCCC---ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 25 ERASLICSITKGDIPL--TIKWLKDGRYLDNSA---ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 25 ~~~~l~C~~~~~~~~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
+++.|.|.+. +.|.+ .+.|+++|..+.... .+.........+.|.|.+++..|+|.|+|.+.|..+..+..+.|
T Consensus 1 e~~~L~C~~~-g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHAS-HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEEe-cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 4789999995 66655 679999999875422 11111112235789999999999999999999999998899999
Q ss_pred EEEcCC
Q psy11132 100 IVNVPP 105 (243)
Q Consensus 100 ~v~~~p 105 (243)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 998765
No 95
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.58 E-value=2.7e-14 Score=84.47 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=61.1
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+.+.|.|.+. +.|.+.+.|++++..+....... ........|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~-g~P~p~i~W~~~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAE-GIPQPTITWRLNGVPIEELPPDP--RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEce-eeCCCEEEEEECCEECCCCCCcc--eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 78999999995 88888999999999886544321 11122578999999999999999999999999888887776
No 96
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.58 E-value=6e-14 Score=88.54 Aligned_cols=80 Identities=25% Similarity=0.438 Sum_probs=63.5
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCC-CeeEEee---ccceeEEEEeecC-CCCCeeEEEEEEccCcceeee
Q psy11132 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDL---DSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYS 192 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~---~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~~ 192 (243)
..|..+.|.|.+ .|.|.+.+.|++++..+.... .+..... ....+.|.|.++. .+|.|.|+|.|.|..|....+
T Consensus 21 ~~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 21 DGSSDANLVCQA-QGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred CCCCEEEEEEEC-cccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 357899999999 599999999999999886432 2221111 1224679999987 589999999999999999999
Q ss_pred EEEEEE
Q psy11132 193 SKLQVK 198 (243)
Q Consensus 193 ~~l~v~ 198 (243)
+.|.+.
T Consensus 100 i~L~~~ 105 (109)
T cd05773 100 IQLVST 105 (109)
T ss_pred EEEEec
Confidence 999888
No 97
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.57 E-value=2e-14 Score=83.43 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=57.2
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
+.|.|.+. +.|.+.+.|+|+|..+....+.. .....|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~-g~P~p~v~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVK-AYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEE-EeCCCEEEEEECCEECCCCCEEE-----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46999995 88989999999999987654322 125789999999999999999999999987777766653
No 98
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.57 E-value=4.6e-14 Score=87.58 Aligned_cols=81 Identities=25% Similarity=0.390 Sum_probs=61.6
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeC--CEecCCC-----CCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKD--GKPLSPR-----FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
..+.+|+.++|.|.+ .|.|.|.+.|++. +..+... .+.... .......|.|.+++.+|+|.|.|.|.|..|
T Consensus 11 ~~~~~G~~v~l~C~~-~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 88 (98)
T cd05870 11 ETTVENGAATLSCKA-EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-GQHGESSLHIKDVKLSDSGRYDCEAASRIG 88 (98)
T ss_pred EEEcCCCcEEEEEec-ccCCCCeEEEEECCCCceeccCCcCcCceEEEe-ecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence 567889999999999 6999999999984 3333221 112221 122346799999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy11132 188 QARYSSKLQV 197 (243)
Q Consensus 188 ~~~~~~~l~v 197 (243)
....++.|.|
T Consensus 89 ~~~~~~~l~~ 98 (98)
T cd05870 89 GHQKSMYLDI 98 (98)
T ss_pred cceeEEEEeC
Confidence 9888877754
No 99
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.56 E-value=5.7e-14 Score=83.29 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=59.2
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
|+++.|.|.+. +.|.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.+.|..|.......+
T Consensus 1 G~~v~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVAT-GVPTPIINWRLNWGHVPDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEE-EecCCEEEEEECCeECCCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 78999999995 8888999999999888766655443322 24689999999999999999999999876544433
No 100
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.56 E-value=6.8e-14 Score=80.55 Aligned_cols=68 Identities=22% Similarity=0.470 Sum_probs=54.1
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
|+++.|.|.+ .|.|.|.+.|++++..+....... .....|.|.++ .|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~~~~~~-----~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTKEDEMP-----VGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCCcccee-----cCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999 699999999999998876543221 12346888876 47899999999999988877665
No 101
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.56 E-value=5e-14 Score=83.68 Aligned_cols=76 Identities=22% Similarity=0.384 Sum_probs=60.9
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|+.+.|.|.+ .+. .+.+.|+++|..+......... ...|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 4 ~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~ 76 (79)
T cd04973 4 YSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS 76 (79)
T ss_pred EEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence 446789999999999 465 5689999999988765433322 247999999999999999999999998777776
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
+.|
T Consensus 77 v~V 79 (79)
T cd04973 77 VNV 79 (79)
T ss_pred EeC
Confidence 654
No 102
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.56 E-value=6.6e-14 Score=85.09 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=61.8
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eee
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYS 192 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~ 192 (243)
..+..|+++.|.|.+ .|.|. .+.|++ ++..+....+... ...+..+.|.|..+..+|+|.|+|.|.|..|.. .++
T Consensus 10 ~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~~~r~~~-~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 86 (92)
T cd05866 10 VELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVSSQRVVV-QKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT 86 (92)
T ss_pred eEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecCCCCEEE-EeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEE
Confidence 457789999999999 58887 999997 4666655444333 223335689999999999999999999999875 566
Q ss_pred EEEEE
Q psy11132 193 SKLQV 197 (243)
Q Consensus 193 ~~l~v 197 (243)
+.|.+
T Consensus 87 i~l~~ 91 (92)
T cd05866 87 VVLEI 91 (92)
T ss_pred EEEEE
Confidence 66654
No 103
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.56 E-value=8.8e-14 Score=82.18 Aligned_cols=73 Identities=27% Similarity=0.447 Sum_probs=55.7
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee--eEEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY--SSKLQVK 198 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~l~v~ 198 (243)
++|.|.+ .|.|.|.+.|+|+|..+.......... .....|.|.++..+|+|.|.|.|.|..|.... .+.|.|.
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQGNYSVS--SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCCCccEEEe--CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4789999 699999999999999886543221111 12357999999999999999999999998754 4555543
No 104
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.55 E-value=2.3e-14 Score=82.86 Aligned_cols=68 Identities=31% Similarity=0.527 Sum_probs=56.6
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
+.|.|.+. +.|.+.+.|+|++..+....++.+.. ...|.|.+++.+|+|.|+|.+.|..|..+..+.|
T Consensus 1 v~L~C~~~-g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQ-GDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecce-EeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999995 88888999999999887665554332 4679999999999999999999999988776655
No 105
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.55 E-value=8.6e-14 Score=81.62 Aligned_cols=71 Identities=20% Similarity=0.387 Sum_probs=56.6
Q ss_pred EEEEeeCCCCCceeEEEECCeeecCCCceEEE--E--eeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132 29 LICSITKGDIPLTIKWLKDGRYLDNSAALSIT--H--VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100 (243)
Q Consensus 29 l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 100 (243)
|.|.+. |.|.|.++|+|+|..+....+.... . .....+.|.|.+++..|+|.|+|+|.|..|....++.+.
T Consensus 3 i~~~v~-G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVK-GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEe-EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 788884 9999999999999999876543221 1 112346899999999999999999999999887777654
No 106
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=9e-14 Score=81.71 Aligned_cols=73 Identities=33% Similarity=0.577 Sum_probs=57.6
Q ss_pred CCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
|+.+.|.|.+ .|.|.|.+.|++ ++..+......... ....|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLISNSSRTLVY----DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEecCCCeEEEe----cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6889999999 689999999997 56655543322221 1357899999999999999999999999888777754
No 107
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=1.8e-13 Score=83.33 Aligned_cols=77 Identities=25% Similarity=0.453 Sum_probs=61.3
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS 193 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~ 193 (243)
..+.+|+.++|.|.+ .|. .+.+.|++++..+.... .. .......|.|.+++.+|+|.|.|.|.|..|... ..+
T Consensus 13 ~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~~~-~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~ 86 (91)
T cd05740 13 QPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVPPR-LQ---LSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY 86 (91)
T ss_pred cccccCCcEEEEEEe-CCC-CCEEEEEECCEECCCCC-EE---EeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence 567899999999999 588 99999999998876432 11 122245799999999999999999999999754 456
Q ss_pred EEEE
Q psy11132 194 KLQV 197 (243)
Q Consensus 194 ~l~v 197 (243)
.|.|
T Consensus 87 ~L~V 90 (91)
T cd05740 87 ILNV 90 (91)
T ss_pred EEEe
Confidence 6655
No 108
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.55 E-value=4.8e-14 Score=81.60 Aligned_cols=69 Identities=32% Similarity=0.494 Sum_probs=55.6
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+.... .... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~~-~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELPKGR-AEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCCCCc-EEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 4789999 699999999999987665432 2221 2457999999999999999999999999888877754
No 109
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.55 E-value=1.3e-13 Score=84.67 Aligned_cols=80 Identities=21% Similarity=0.437 Sum_probs=58.6
Q ss_pred CCccCCCCCcccc---cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecC-CCCCeeEEEE
Q psy11132 10 PKLSPTNPERTLN---VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS-ARHSGNYSCT 85 (243)
Q Consensus 10 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~ 85 (243)
|.+...+.+..+. +|+.+.|.|.+. |.|.+.+.|++++..+.......... ....|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~-G~P~P~i~W~k~g~~l~~~~~~~~~~---~~g~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEAR-GNPVPTYRWLRNGTEIDTESDYRYSL---IDGNLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEee-ecCCCEEEEEECCeECccCCCceEEe---eCCeEEEccCCccCcCEEEEEE
Confidence 4444444444333 578999999995 88999999999999886543322211 14578898875 6999999999
Q ss_pred EEeCCCcc
Q psy11132 86 VRNMVAED 93 (243)
Q Consensus 86 ~~~~~~~~ 93 (243)
|.|..|..
T Consensus 78 A~N~~G~~ 85 (94)
T cd05848 78 ATNSIGSI 85 (94)
T ss_pred EEcCCCeE
Confidence 99999875
No 110
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.54 E-value=1.4e-13 Score=81.74 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=56.9
Q ss_pred EEEEEeeCCCCCceeEEEECCeeecCCCceEEEEe------eeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132 28 SLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV------DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100 (243)
Q Consensus 28 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 100 (243)
.|.|.+. |.|.|.++|+|+|..+....+...... ....+.|.|.+++..|+|.|+|.|.|..|..+..+.+.
T Consensus 2 ~i~~~v~-G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVR-GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeE-eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789984 899999999999999987654322211 12245799999999999999999999999988777665
No 111
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.54 E-value=4.1e-14 Score=83.36 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=57.0
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
|.+...|+...+.+|++++|.|.+. +.|. ..+.|++++..+.. ....|.|.++ .+|+|.|+|.+.+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~-~~p~~~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGF-NSPEQNSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCC-CCCCCccEEEEECCEEeec-----------cCCeEEEeec-ccCCEEeEEECCC
Confidence 3455667777899999999999985 5454 47999999987732 1457899999 9999999999986
Q ss_pred CCCcceeEEEEE
Q psy11132 89 MVAEDTQVQRLI 100 (243)
Q Consensus 89 ~~~~~~~~~~l~ 100 (243)
. ..+..+.|.
T Consensus 68 ~--~~S~~v~l~ 77 (78)
T cd05752 68 S--SLSDPVHLE 77 (78)
T ss_pred C--cCCCCEEEe
Confidence 4 333334443
No 112
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.54 E-value=1e-13 Score=84.83 Aligned_cols=80 Identities=25% Similarity=0.522 Sum_probs=59.7
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEe-CCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcc-eeee
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYS 192 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~ 192 (243)
..+..|+++.|.|.+ .|.| +.+.|++ ++..+...............+.|.|.++..+|+|.|+|.|.|..|. ...+
T Consensus 10 ~~v~~G~~~~l~C~~-~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 10 GEISVGESKFFLCQV-IGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred EEECCCCeEEEEEEe-EeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 456789999999999 4776 4999997 5655554333333333344578999999999999999999998654 4566
Q ss_pred EEEE
Q psy11132 193 SKLQ 196 (243)
Q Consensus 193 ~~l~ 196 (243)
+.|.
T Consensus 88 v~l~ 91 (92)
T cd04977 88 VNLK 91 (92)
T ss_pred EEEE
Confidence 6654
No 113
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.54 E-value=1.6e-13 Score=85.79 Aligned_cols=82 Identities=26% Similarity=0.447 Sum_probs=57.6
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCC----CCeeEEeeccceeEEEEe--ecCCCCCeeEEEEEEccCcc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FPVNVSDLDSFSSLLSIN--SVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~--~~~~~d~g~y~C~~~n~~g~ 188 (243)
..+.+|+.+.|.|.+ .|.|.+.+.|+++|..+... .........+....+.+. .+..+|+|.|+|.|.|..|.
T Consensus 11 ~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~ 89 (100)
T cd07693 11 LIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGE 89 (100)
T ss_pred eEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccc
Confidence 557789999999999 69999999999999988752 111111111111222232 23689999999999999998
Q ss_pred -eeeeEEEEE
Q psy11132 189 -ARYSSKLQV 197 (243)
Q Consensus 189 -~~~~~~l~v 197 (243)
....+.|.|
T Consensus 90 ~~s~~~~l~v 99 (100)
T cd07693 90 AVSRNASLEV 99 (100)
T ss_pred eecceEEEEe
Confidence 556666655
No 114
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=1.2e-13 Score=84.40 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=60.7
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeec--------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLD--------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 95 (243)
|+.+.|.|.+ .+.|.+.+.|++++..+. ...++.+. ....|.|.+++.+|+|.|+|.+.|..|....
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTGDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 7899999998 488888999999886431 12233221 1457999999999999999999999999888
Q ss_pred EEEEEEEcC
Q psy11132 96 VQRLIVNVP 104 (243)
Q Consensus 96 ~~~l~v~~~ 104 (243)
.+.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 899998764
No 115
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.54 E-value=6.4e-14 Score=84.23 Aligned_cols=78 Identities=35% Similarity=0.565 Sum_probs=62.2
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
....|+.+.|.|.+ .|.|.+.+.|++++..+....... .......|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 5 ~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCccce---ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 35679999999999 588999999999998776443221 11224679999999999999999999999988877776
Q ss_pred EE
Q psy11132 196 QV 197 (243)
Q Consensus 196 ~v 197 (243)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 54
No 116
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.54 E-value=1.2e-13 Score=84.36 Aligned_cols=77 Identities=31% Similarity=0.504 Sum_probs=57.5
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeC----CEecCCCCCe--eEEe------eccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKD----GKPLSPRFPV--NVSD------LDSFSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~----~~~~~~~~~~--~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
|+.+.|.|.+ .|.|.|.++|+++ +..+...... .... .....+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 6889999999 5999999999984 3433322111 1111 111236799999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy11132 188 QARYSSKLQV 197 (243)
Q Consensus 188 ~~~~~~~l~v 197 (243)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888888876
No 117
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.54 E-value=6e-14 Score=80.74 Aligned_cols=68 Identities=21% Similarity=0.406 Sum_probs=54.8
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. |.|.|.+.|+|+|.++....+.. ....|.|.++..+|+|.|+|.+.|..|......++.+
T Consensus 1 ~~~~c~v~-G~P~P~v~W~k~g~~l~~~~~~~------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYY-GYPPPEVKWYKNGQLIVLNHTFK------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEE-EeCCCEEEEEECCEECCCCCEEc------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899995 89999999999999987643221 1457999999999999999999999997665555554
No 118
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.53 E-value=4.8e-14 Score=82.24 Aligned_cols=70 Identities=33% Similarity=0.557 Sum_probs=56.5
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+..... . .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~-~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPADRT-K---FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCCCce-e---EecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999 6999999999999887654321 1 1123467999999999999999999999999888888776
No 119
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.53 E-value=2.8e-13 Score=83.23 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=60.3
Q ss_pred CCccCCCCCcccccC---CeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecC-CCCCeeEEEE
Q psy11132 10 PKLSPTNPERTLNVG---ERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS-ARHSGNYSCT 85 (243)
Q Consensus 10 p~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~ 85 (243)
|.+...+....+.+| +.+.|.|.+. +.|.+.++|+++|..+.......... ....|.|.++. ..|+|.|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~-g~P~p~i~W~~~g~~l~~~~~~~~~~---~~g~L~I~~~~~~~D~G~Y~C~ 77 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRAR-ASPPATYRWKMNGTEIKFAPESRYTL---VAGNLVINNPQKARDAGSYQCL 77 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEce-eCCCCEEEEEECCEECccCCCceEEE---ECCeEEEccCCccCcCEEEEEE
Confidence 444444555555444 6899999995 88889999999999886433222111 14578888765 5999999999
Q ss_pred EEeCCCcc-eeEEEE
Q psy11132 86 VRNMVAED-TQVQRL 99 (243)
Q Consensus 86 ~~~~~~~~-~~~~~l 99 (243)
|+|..|.. +..+.|
T Consensus 78 A~N~~G~~~s~~a~l 92 (94)
T cd05850 78 AINRCGTVVSREANL 92 (94)
T ss_pred EEcCcCcEEEEEEEE
Confidence 99999974 334443
No 120
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=9.5e-14 Score=81.77 Aligned_cols=71 Identities=28% Similarity=0.404 Sum_probs=54.7
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecC---CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDN---SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. |.|.|.++|+|++..... ..++.. ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~-G~P~P~v~W~k~~~~~~~~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAAT-GHPTPQIAWQKDGGTDFPAARERRMHV---MPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecc-cccCCEEEEEeCCCccCCcccccceEE---ecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999994 889999999999864322 122222 112457999999999999999999999998888887776
No 121
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.53 E-value=1.4e-13 Score=79.22 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=53.8
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
|+.+.|.|.+. |.|.|.|+|++++..+....+... ....|.|.++ .|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~-G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAV-GAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEee-ecCCCEEEEEECCEECCCccceec-----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 68899999995 889999999999988765443221 1446888886 47999999999999987766554
No 122
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.53 E-value=6.3e-14 Score=81.46 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=56.4
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. |.|.|.+.|++++..+..... .. ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~-G~P~P~v~W~k~~~~~~~~~~-~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAE-GLPTPEVHWDRIDGPLSPNRT-KK---LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEee-EecCCeEEEEECCcCCCCCce-eE---EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46999994 889999999999987654322 11 122578999999999999999999999999888877765
No 123
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.53 E-value=3.4e-13 Score=83.69 Aligned_cols=89 Identities=20% Similarity=0.364 Sum_probs=67.8
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCC--CceEEEEee---eeceEEEEeecCCCC-Cee
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNS--AALSITHVD---QYNSMLVIDSVSARH-SGN 81 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~--~~~~~~~~~---~~~~~l~i~~~~~~d-~G~ 81 (243)
||.+.. +....+.+|+.+.|.|.+. +.|.+ .+.|++++..+... .++.+.... ...+.|.|.++..+| .|.
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~-g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIF-STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEc-ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCcccccccee
Confidence 677754 4566789999999999995 77877 69999999887653 344443321 123589999999955 899
Q ss_pred EEEEEEeCCCcceeEEEE
Q psy11132 82 YSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 82 Y~C~~~~~~~~~~~~~~l 99 (243)
|.|.|.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999987766654
No 124
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.53 E-value=1.6e-13 Score=83.68 Aligned_cols=78 Identities=33% Similarity=0.509 Sum_probs=57.5
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCC----EecCCCC-Ce-eEEee------ccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDG----KPLSPRF-PV-NVSDL------DSFSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~----~~~~~~~-~~-~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
|+.+.|.|.+ .|.|.|.++|+|++ ..+.... .. ..... ......|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 6789999999 69999999999964 2222111 11 11110 11235799999999999999999999999
Q ss_pred ceeeeEEEEEE
Q psy11132 188 QARYSSKLQVK 198 (243)
Q Consensus 188 ~~~~~~~l~v~ 198 (243)
....++.|.|.
T Consensus 80 ~~~~sa~L~V~ 90 (90)
T cd04974 80 PSHHSAWLTVL 90 (90)
T ss_pred cccCCEEEEeC
Confidence 99888888763
No 125
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.53 E-value=1.3e-13 Score=81.33 Aligned_cols=71 Identities=32% Similarity=0.493 Sum_probs=55.6
Q ss_pred EEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeE--EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 123 TRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNV--SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 123 ~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
+.|.|.+. | .|.+.+.|++++..+........ .......+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~-g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEAT-SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEcc-CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 46899995 6 89999999999998875443221 222234578999999999999999999999998776654
No 126
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=2e-13 Score=84.30 Aligned_cols=84 Identities=27% Similarity=0.429 Sum_probs=61.5
Q ss_pred CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeec-----CCCCCeeEEEEEEe
Q psy11132 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSV-----SARHSGNYSCTVRN 88 (243)
Q Consensus 14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~ 88 (243)
..+.+..+.+|+++.|.|.+. +.|.+.+.|+|+|..+............ ++.+.|.++ +..|.|.|+|.+.|
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLNLVSDERRQQLP--NGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecc-cCCCCEEEEEECCeECccccCcceEEcc--CCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 345567788999999999994 8888999999999988754332111111 345666665 68999999999999
Q ss_pred C-CCcc-eeEEEEE
Q psy11132 89 M-VAED-TQVQRLI 100 (243)
Q Consensus 89 ~-~~~~-~~~~~l~ 100 (243)
. .|.. +..+.|.
T Consensus 81 ~~~G~~~s~~~~l~ 94 (95)
T cd05722 81 DSLGSIVSRTARLT 94 (95)
T ss_pred CccCcEEEeeeEEe
Confidence 9 8864 5555554
No 127
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.52 E-value=2e-13 Score=80.64 Aligned_cols=72 Identities=26% Similarity=0.451 Sum_probs=55.3
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc--eeEEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED--TQVQRLIVN 102 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~ 102 (243)
++|.|.+. +.|.+.++|+|+|..+.... ++.+. .....|.|.+++.+|+|.|.|.+.|..|.. +..+.|.|.
T Consensus 1 v~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHID-GHPRPTYQWFRDGTPLSDGQGNYSVS---SKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEee-ecCCCcEEEEECCEECCCCCccEEEe---CCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 57999995 88888999999999886543 22221 124589999999999999999999999975 345566553
No 128
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.52 E-value=1.4e-13 Score=97.70 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=83.6
Q ss_pred CCCCCCCcEEEEEEeecCCC-----------CCEEEEEeCCEec--CCC-CC---e--eEEeeccceeEEEEeecCCCCC
Q psy11132 115 DGLPEGARTRVICGVTHGDP-----------PLTIRWLKDGKPL--SPR-FP---V--NVSDLDSFSSLLSINSVSAAHS 175 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p-----------~~~~~W~~~~~~~--~~~-~~---~--~~~~~~~~~~~l~i~~~~~~d~ 175 (243)
..+.+|+++.|.|.+. +.| ...+.|++++... ... .. . ...........|.|.+++.+|+
T Consensus 32 ~~v~eGe~v~L~C~~~-~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 32 VYAKFGDPMVLLCTGK-HYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred EEecCCCCEEEEcccc-ccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 4567999999999983 433 4589999987542 110 00 0 0111112246899999999999
Q ss_pred eeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCcc-------cccccceEEeCCeeE
Q psy11132 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYY-------SFEQDSWMIDNENYV 238 (243)
Q Consensus 176 g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~W~~~~~~~~ 238 (243)
|.|+|.|.|..+....++.|.|.. .+....+..+..+.+.|... ..+.++|+|||+.+.
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~----~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~ 176 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDS----GTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL 176 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEec----CCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC
Confidence 999999999888888888888752 12233455678888999753 236899999998764
No 129
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.52 E-value=2.1e-13 Score=82.72 Aligned_cols=79 Identities=25% Similarity=0.419 Sum_probs=60.8
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee-eeE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS 193 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~ 193 (243)
..+.+|+++.|.|.+..|.|.+.+.|++++..+.......... ..+.|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus 6 ~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 6 TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV---DDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc---cCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 4567899999999974588999999999999887643221111 135799999999999999999999999764 444
Q ss_pred EEE
Q psy11132 194 KLQ 196 (243)
Q Consensus 194 ~l~ 196 (243)
.+.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 443
No 130
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=2.7e-13 Score=82.89 Aligned_cols=84 Identities=20% Similarity=0.333 Sum_probs=59.2
Q ss_pred CCccCCCCCccccc---CCeEEEEEEeeCCCCCceeEEEECCeeecCC-CceEEEEeeeeceEEEEeecC-CCCCeeEEE
Q psy11132 10 PKLSPTNPERTLNV---GERASLICSITKGDIPLTIKWLKDGRYLDNS-AALSITHVDQYNSMLVIDSVS-ARHSGNYSC 84 (243)
Q Consensus 10 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C 84 (243)
|.+...+....+.+ |+.+.|.|.+. |.|.+.++|++++..+... .++.. .+..|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~-G~P~P~i~W~k~~~~i~~~~~~~~~-----~~g~L~I~~~~~~~D~G~Y~C 75 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRAR-ANPFPIYKWRKNNLDIDLTNDRYSM-----VGGNLVINNPDKYKDAGRYVC 75 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCc-cCCCCEEEEEECCEEccCCCCeEEE-----ECCEEEECcCCcCCCCEEEEE
Confidence 34444444443433 44899999994 8899999999999887532 23222 14679998885 689999999
Q ss_pred EEEeCCCcc-eeEEEE
Q psy11132 85 TVRNMVAED-TQVQRL 99 (243)
Q Consensus 85 ~~~~~~~~~-~~~~~l 99 (243)
.|.|..|.. +..+.|
T Consensus 76 ~A~N~~G~~~s~~a~l 91 (93)
T cd05849 76 IVSNIYGKVRSREATL 91 (93)
T ss_pred EEEeCcceEEEccEEE
Confidence 999999874 334443
No 131
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=2.7e-13 Score=79.67 Aligned_cols=73 Identities=30% Similarity=0.563 Sum_probs=57.3
Q ss_pred CCeEEEEEEeeCCCCCceeEEEE-CCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
|+.+.|.|.+. +.|.+.+.|++ ++..+....+.... ...+|.|..++.+|.|.|+|.+.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKAR-GDPEPAIHWISPDGKLISNSSRTLVY----DNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEcc-CcCCCEEEEEeCCCEEecCCCeEEEe----cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999994 88889999997 56555544333221 1467999999999999999999999998877776654
No 132
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.51 E-value=1.2e-13 Score=82.99 Aligned_cols=79 Identities=25% Similarity=0.400 Sum_probs=61.8
Q ss_pred cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR 98 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 98 (243)
.....|+++.|.|.+. +.|.+.+.|++++..+....... .......|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus 4 ~~~~~G~~v~L~C~~~-g~p~p~i~W~k~~~~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 79 (82)
T cd05856 4 IARPVGSSVRLKCVAS-GNPRPDITWLKDNKPLTPTEIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYK 79 (82)
T ss_pred eeccCCCeEEEEEEee-EeCCCcEEEEECCcCCcCCccce---ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEE
Confidence 3466799999999985 77888999999998775433221 1112468999999999999999999999998777776
Q ss_pred EEE
Q psy11132 99 LIV 101 (243)
Q Consensus 99 l~v 101 (243)
|.|
T Consensus 80 v~v 82 (82)
T cd05856 80 VDV 82 (82)
T ss_pred EeC
Confidence 653
No 133
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.51 E-value=8.2e-14 Score=85.26 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=61.4
Q ss_pred CcccccCCeEEEEEEeeCC----CCCceeEEEECCeeecCC--CceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 18 ERTLNVGERASLICSITKG----DIPLTIKWLKDGRYLDNS--AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
...+.+|+++.|.|.+.+. .|.+.+.|||++..+... ....+.. ....|.|.+++.+|+|.|+|.++|..+
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 4567899999999998532 577899999998764321 1111111 246899999999999999999999999
Q ss_pred cceeEEEEEE
Q psy11132 92 EDTQVQRLIV 101 (243)
Q Consensus 92 ~~~~~~~l~v 101 (243)
.....+.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 8877776654
No 134
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.51 E-value=3.1e-13 Score=82.46 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=57.1
Q ss_pred CCeEEEEEEeeCCCCCceeEEEEC----CeeecCCCceEEE--Ee------eeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 24 GERASLICSITKGDIPLTIKWLKD----GRYLDNSAALSIT--HV------DQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~----~~~~~~~~~~~~~--~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
|+.+.|.|.+. +.|.|.+.|+++ +..+......... .. ......|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~-g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVY-SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEe-cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 78999999995 888899999984 4434322211111 10 01125799999999999999999999999
Q ss_pred cceeEEEEEE
Q psy11132 92 EDTQVQRLIV 101 (243)
Q Consensus 92 ~~~~~~~l~v 101 (243)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888888776
No 135
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.51 E-value=1.9e-13 Score=80.15 Aligned_cols=72 Identities=29% Similarity=0.549 Sum_probs=54.9
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v 197 (243)
+.|.|.+ .|.|.|.+.|++++..+........... ..+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQL--RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEc--CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 3689999 6999999999999988763221111111 23569999999999999999999999975 56666665
No 136
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.51 E-value=1.6e-13 Score=79.36 Aligned_cols=69 Identities=29% Similarity=0.471 Sum_probs=55.2
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
++|.|.+. +.|.+.+.|+|++..+... +.... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~-g~P~p~v~W~k~~~~~~~~-~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVG-GDPVPTVLWRKEDGELPKG-RAEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECc-cCCCCEEEEEECCccCCCC-cEEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999994 8888999999998766442 33322 2567999999999999999999999998877777654
No 137
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.51 E-value=2e-13 Score=78.66 Aligned_cols=70 Identities=23% Similarity=0.310 Sum_probs=53.8
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
+.|.|.+ .|.|+|++.|++++..+........ .. ...|.|.++..+|+|.|+|.|.|..........+++
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~~~~~~--~~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAEKCSRYH--VD--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCCCCcEEE--eC--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 3689999 5999999999999998875432211 11 347999999999999999999998766655555443
No 138
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.51 E-value=2.6e-13 Score=80.43 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCCCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 14 PTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
..+.+..+.+|+++.|.|.+. |.|.+ .|.|+++|.++.... ....+.|.|..+ .|.|.|.|.|+|..|.
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~-G~P~P~~I~W~k~g~~l~~~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAV-GPPEPVEILWWQGGSPLGDPP-------APSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CCCCceEEcCCCCEEEEEEee-eecCCeEEEEEECCEECCCCC-------CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 346678899999999999994 88888 799999999886411 111457888876 4789999999999986
Q ss_pred c
Q psy11132 93 D 93 (243)
Q Consensus 93 ~ 93 (243)
.
T Consensus 73 ~ 73 (81)
T cd05749 73 T 73 (81)
T ss_pred E
Confidence 4
No 139
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.50 E-value=4.1e-13 Score=79.28 Aligned_cols=73 Identities=30% Similarity=0.537 Sum_probs=59.2
Q ss_pred EEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 124 ~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
.|.|.+ .|.|.|.+.|++++..+........... .....|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 2 ~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEe-eecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 689999 5899999999999998875433222221 223579999999999999999999999999999888876
No 140
>KOG3515|consensus
Probab=99.50 E-value=2.8e-13 Score=108.67 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=142.1
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM 89 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 89 (243)
|......-...+.+|+.|.|.|.+..++|.+.+.|++.++.+. .+.. ......|......++..+.|.|.+.|.
T Consensus 8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~c~a~ns 81 (741)
T KOG3515|consen 8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYA----TIADPTLVTTGDVRDTVAELNCRAFNS 81 (741)
T ss_pred ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--cccc----cccCCceeeecchhhhhhhhhhhhccc
Confidence 3333333344789999999999997677778999999887665 1111 112567888888888889999999998
Q ss_pred CCc-ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEe-ecCCCCCEEEEEeCCEecCCCCC--e----eEEeec-c
Q psy11132 90 VAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV-THGDPPLTIRWLKDGKPLSPRFP--V----NVSDLD-S 160 (243)
Q Consensus 90 ~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~p~~~~~W~~~~~~~~~~~~--~----~~~~~~-~ 160 (243)
.+. ......+.+..+|........ .....+..+.+.|.+ ..+.|.+.+.|..++........ . ...... .
T Consensus 82 ~~~~~~~~~~l~v~~~pa~~~~~~e-~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t 160 (741)
T KOG3515|consen 82 VGMPSRCPMILDVDYPPACLPELGE-IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYT 160 (741)
T ss_pred ccCceecceeeccccCccccccccc-hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceec
Confidence 665 445566777777665443332 445678899999944 35677889999988765432211 0 001101 1
Q ss_pred ceeEEEEeecCCCCCeeEEEEEEccC---cceeeeEEEEEEeecCCCCCe-------eeeeccceeeeccCcccc---cc
Q psy11132 161 FSSLLSINSVSAAHSGEYTCVASNTA---AQARYSSKLQVKGNLNRLPPS-------YTLVFSQASYMSTSYYSF---EQ 227 (243)
Q Consensus 161 ~~~~l~i~~~~~~d~g~y~C~~~n~~---g~~~~~~~l~v~~~~~~~~p~-------~~~~~~~~~~~~~~~~~~---~~ 227 (243)
..+.+.+...+.++.|.|+|.|.|.. +.......+.+. ....... -....++...+.|+...- +.
T Consensus 161 ~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~--~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~ 238 (741)
T KOG3515|consen 161 EPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVE--APCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQ 238 (741)
T ss_pred cccceeeEEEEecCCceeEcccccccCccccccceeEeecc--cccccceecchhhcCcccccceEEEEehhhcCCcchh
Confidence 23567788888999999999999953 333333444433 1101111 123456777888854432 38
Q ss_pred cceEEeCCeeEE
Q psy11132 228 DSWMIDNENYVY 239 (243)
Q Consensus 228 ~~W~~~~~~~~~ 239 (243)
++|+++....-+
T Consensus 239 ~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 239 QTWYKDSRPQSE 250 (741)
T ss_pred hhhccccccchh
Confidence 999998766543
No 141
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.50 E-value=4.7e-13 Score=81.59 Aligned_cols=77 Identities=23% Similarity=0.451 Sum_probs=56.7
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECC----eeecCCCc--eEEEEe------eeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDG----RYLDNSAA--LSITHV------DQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~----~~~~~~~~--~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
|+.+.|.|.+. +.|.|.|+|+|++ ..+..... ...... ......|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~-g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEe-CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 68899999995 8899999999963 33321111 111110 01235799999999999999999999999
Q ss_pred cceeEEEEEE
Q psy11132 92 EDTQVQRLIV 101 (243)
Q Consensus 92 ~~~~~~~l~v 101 (243)
....++.|.|
T Consensus 80 ~~~~sa~L~V 89 (90)
T cd04974 80 PSHHSAWLTV 89 (90)
T ss_pred cccCCEEEEe
Confidence 9888888876
No 142
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=2.2e-13 Score=81.66 Aligned_cols=77 Identities=29% Similarity=0.391 Sum_probs=56.1
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEe---c-CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKP---L-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~---~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
|+.+.|.|.+ .|.|.|.+.|++++.. + ...............+.|.|.++..+|+|.|.|.|.|..|.....+.|
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 7889999999 6999999999997421 1 111100000011123679999999999999999999999998888887
Q ss_pred EE
Q psy11132 196 QV 197 (243)
Q Consensus 196 ~v 197 (243)
+|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 64
No 143
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.49 E-value=1.9e-13 Score=81.72 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=56.9
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQV 96 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~ 96 (243)
...+.+|++++|.|.+..+.+...+.|+|++..+.... ....|.|.+++.+|+|.|+|.+.+..+. .+..
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~---------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~ 78 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH---------SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEP 78 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC---------CCceEEECccCHHHCEEEEEEEEeCCceecCCC
Confidence 34588999999999985456667899999997664211 1467999999999999999999988774 3444
Q ss_pred EEEE
Q psy11132 97 QRLI 100 (243)
Q Consensus 97 ~~l~ 100 (243)
+.|+
T Consensus 79 ~~i~ 82 (83)
T cd05753 79 VSIT 82 (83)
T ss_pred EEEE
Confidence 4443
No 144
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.49 E-value=5.5e-13 Score=78.73 Aligned_cols=74 Identities=28% Similarity=0.471 Sum_probs=59.4
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
+.|.|.+. +.|.+.+.|+|++..+.......+.... ....|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~-g~P~p~v~W~k~~~~l~~~~~~~~~~~~-~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAE-GIPLPRLTWLKNGMDITPKLSKQLTLIA-NGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEee-ecCCCEEEEEECCEECCCCCCccEEEeC-CCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 46899995 8888999999999988765433332222 24579999999999999999999999998888888875
No 145
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.48 E-value=3.5e-13 Score=78.99 Aligned_cols=70 Identities=23% Similarity=0.443 Sum_probs=55.1
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 101 (243)
++|.|.+. |.|.+.+.|++++..+.. ..++... ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~-G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAAS-GNPDPEITWFKDFLPVDTTSNGRIKQL----RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEe-EecCCEEEEEECCEECccCCCCCEEEc----CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999995 889999999999988763 3333322 1457999999999999999999999987 466666665
No 146
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.48 E-value=5.1e-13 Score=78.87 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=54.1
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCC---eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFP---VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
+.|.|.+..+.|.+.+.|++++..+..... ..........+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 468999854578889999999988864221 111122234578999999999999999999999998776654
No 147
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.48 E-value=4e-13 Score=79.24 Aligned_cols=72 Identities=31% Similarity=0.490 Sum_probs=54.9
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEE--EEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSI--THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR 98 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 98 (243)
+.|.|.+.++.|.+.+.|+|++..+....+... .........|.|.+++.+|.|.|+|.+.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999964388899999999998876543321 112223578999999999999999999999998665543
No 148
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.48 E-value=8.9e-13 Score=80.94 Aligned_cols=68 Identities=26% Similarity=0.494 Sum_probs=53.6
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC-CCCCeeEEEEEEccCccee
Q psy11132 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQAR 190 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~ 190 (243)
.|+.+.|.|.+ .|.|.|.++|+++|..+.......... ..+.|.|.++. .+|.|.|+|.|.|..|...
T Consensus 18 ~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~---~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSL---IDGNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEe---eCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 58999999999 699999999999999886443222211 13568888875 6999999999999999774
No 149
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.48 E-value=2.4e-13 Score=83.20 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=60.6
Q ss_pred CCCCCCCcEEEEEEeecC-----CCCCEEEEEeCCEecCCCC--CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 115 DGLPEGARTRVICGVTHG-----DPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
..+.+|+.+.|.|.+ .+ .|.+.+.||+++..+.... ...... ....|.|.++..+|+|.|+|.+.|..|
T Consensus 9 ~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 9 SYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 345689999999998 46 6888999999987643221 111111 136799999999999999999999999
Q ss_pred ceeeeEEEEE
Q psy11132 188 QARYSSKLQV 197 (243)
Q Consensus 188 ~~~~~~~l~v 197 (243)
..+.++.|.|
T Consensus 85 ~~~~~~~L~v 94 (94)
T cd05756 85 CMKVSISLTV 94 (94)
T ss_pred cEEEEEEEEC
Confidence 9888887764
No 150
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.47 E-value=1.5e-12 Score=79.64 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=68.8
Q ss_pred cCCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCC--CceEEEEee---eeceEEEEeecCCCC-Cee
Q psy11132 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNS--AALSITHVD---QYNSMLVIDSVSARH-SGN 81 (243)
Q Consensus 8 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~---~~~~~l~i~~~~~~d-~G~ 81 (243)
.||.+ .......+.+|+.+.|.|.+...+++..|.|.+++..+... .++.+.... ...+.|+|.++...| .|.
T Consensus 1 gpP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 1 GPPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 36777 44556778899999999999534444588999988776543 455554432 346899999998877 799
Q ss_pred EEEEEEeCCCcceeEEEE
Q psy11132 82 YSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 82 Y~C~~~~~~~~~~~~~~l 99 (243)
|.|.|.|..|.....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999998777665
No 151
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.47 E-value=2.9e-13 Score=78.92 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=55.7
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+.|.|.+. +.|.+.+.|++++..+.... ... ......|.|.+++.+|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 v~l~C~~~-g~P~p~v~W~k~~~~~~~~~-~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAE-GLPTPEISWIKIGGELPADR-TKF---ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEee-EecCCeEEEEECCeECCCCc-eeE---ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999995 88889999999988765432 111 122568999999999999999999999998888777765
No 152
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=4.5e-13 Score=80.71 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=58.8
Q ss_pred CCcEEEEEEeecCC--CCCEEEEEeCCEecCCCCCe----eEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132 120 GARTRVICGVTHGD--PPLTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 193 (243)
Q Consensus 120 g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 193 (243)
|+.+.|.|.+ .+. |.+.+.|++++..+...... .........+.|.|.+++.+|+|.|+|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 7899999999 577 88999999887655422111 1111122357899999999999999999999999988888
Q ss_pred EEEE
Q psy11132 194 KLQV 197 (243)
Q Consensus 194 ~l~v 197 (243)
.+.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 8766
No 153
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.47 E-value=1.8e-12 Score=78.43 Aligned_cols=81 Identities=32% Similarity=0.594 Sum_probs=63.1
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l 195 (243)
.+..|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|.++..+|.|.|.|.+.|..|..+.++.|
T Consensus 5 ~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 5 AVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred EecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 34679999999999 58899999999999887654333222222234679999999999999999999999988777776
Q ss_pred EE
Q psy11132 196 QV 197 (243)
Q Consensus 196 ~v 197 (243)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
No 154
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.47 E-value=1.4e-12 Score=80.89 Aligned_cols=80 Identities=23% Similarity=0.278 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCC--CCeeEEee---ccceeEEEEeecCCC-CCeeEEEEEEccCc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSINSVSAA-HSGEYTCVASNTAA 187 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i~~~~~~-d~g~y~C~~~n~~g 187 (243)
..+..|+.+.|.|.+ .|.|.| .+.|++++..+... .++..... ....+.|.|.++..+ |.|.|.|.|.|..|
T Consensus 11 ~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G 89 (98)
T cd05758 11 QYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG 89 (98)
T ss_pred EEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence 446789999999999 588888 69999999887653 23333221 122367999999984 48999999999999
Q ss_pred ceeeeEEE
Q psy11132 188 QARYSSKL 195 (243)
Q Consensus 188 ~~~~~~~l 195 (243)
.....+.|
T Consensus 90 ~~~~~~~L 97 (98)
T cd05758 90 SGTAIISL 97 (98)
T ss_pred cccEEEEe
Confidence 98877665
No 155
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.45 E-value=1.3e-12 Score=78.03 Aligned_cols=69 Identities=26% Similarity=0.445 Sum_probs=55.1
Q ss_pred CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
.|.+..+.+|+++.|.|.+. + +.+.+.|+++|.++.... ++.. ....|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~-~-~~~~i~W~~ng~~i~~~~~r~~~-----~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPK-S-NLARVVWKFDGKVLTPESAKYLL-----YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECC-C-CCCeEEEEECCEECCCCCceEEE-----ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 35677899999999999973 3 567999999999987653 3322 14569999999999999999998753
No 156
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.45 E-value=8.8e-13 Score=78.99 Aligned_cols=77 Identities=31% Similarity=0.371 Sum_probs=55.3
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCe---ee-cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGR---YL-DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~---~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
|+.+.|.|.+. +.|.+.+.|++++. .+ .................|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus 1 G~~v~l~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHCDVT-GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEeecc-ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 78999999994 88888999999742 11 111110000011124689999999999999999999999988877776
Q ss_pred EE
Q psy11132 100 IV 101 (243)
Q Consensus 100 ~v 101 (243)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 54
No 157
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.45 E-value=9.7e-13 Score=75.84 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=50.8
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR 98 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 98 (243)
+.|.|.+. |.|.|.+.|+|++.++...... .. . ...+|.|.+++.+|+|.|+|.+.+..........
T Consensus 1 ~~l~c~v~-g~P~P~v~W~kdg~~l~~~~~~-~~-~--~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~ 67 (72)
T cd07702 1 YRLTPKVK-AFPAPEVIWLKDGLPAAEKCSR-YH-V--DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLT 67 (72)
T ss_pred CeEEeeEE-EcCCCeEEEEECCEECCCCCcE-EE-e--CCCEEEECcCCHHHCEEEEEEEEccccceEeeEE
Confidence 36899995 8899999999999988764221 11 1 1457999999999999999999997655444333
No 158
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.45 E-value=2.6e-12 Score=77.08 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=57.2
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCe---eEEeeccceeEEEEeecCCCCCeeEEEEEEccCc--ceeeeEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV---NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA--QARYSSK 194 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g--~~~~~~~ 194 (243)
|+++.|.|.+ .+.|.+.+.|++.+......... .........+.|.|.+++.+|+|.|.|.|.|..+ ....++.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999 58889999999877643321111 1111122357899999999999999999999876 5667777
Q ss_pred EEEE
Q psy11132 195 LQVK 198 (243)
Q Consensus 195 l~v~ 198 (243)
++|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7765
No 159
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.44 E-value=2e-12 Score=79.78 Aligned_cols=79 Identities=29% Similarity=0.438 Sum_probs=57.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeec-----CCCCCeeEEEEEEcc-Ccc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-----SAAHSGEYTCVASNT-AAQ 188 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~g~ 188 (243)
..+..|+++.|.|.+ .|.|.+.+.|+++|..+............ .+.+.|..+ ..+|.|.|.|.|.|. .|.
T Consensus 9 ~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 9 IVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLP--NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred eEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEcc--CCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 445679999999999 68999999999999988754331111111 234556555 578999999999999 887
Q ss_pred e-eeeEEEE
Q psy11132 189 A-RYSSKLQ 196 (243)
Q Consensus 189 ~-~~~~~l~ 196 (243)
. +..+.|.
T Consensus 86 ~~s~~~~l~ 94 (95)
T cd05722 86 IVSRTARLT 94 (95)
T ss_pred EEEeeeEEe
Confidence 6 4455554
No 160
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.44 E-value=3e-12 Score=77.45 Aligned_cols=81 Identities=27% Similarity=0.482 Sum_probs=62.5
Q ss_pred ccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
.+.+|+.+.|.|.+. +.|.+.+.|++++..+.................|.|.+++.+|.|.|.|.+.+..+....++.|
T Consensus 5 ~~~~G~~~~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 5 AVPAGSTVRLKCPAS-GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred EecCCCcEEEEEEcC-CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 466899999999995 7788899999999887654433322222224679999999999999999999998887777766
Q ss_pred EE
Q psy11132 100 IV 101 (243)
Q Consensus 100 ~v 101 (243)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 53
No 161
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.44 E-value=8.6e-13 Score=79.70 Aligned_cols=77 Identities=27% Similarity=0.480 Sum_probs=60.2
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCccee
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 95 (243)
+....+.+|++++|.|.+..+.|.+.+.|++++..+.... ......|.|.+++.+|+|.|.|.+.|..+....
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~-------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA-------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc-------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 4455688999999999985456778999999986653321 112568999999999999999999999888776
Q ss_pred EEEE
Q psy11132 96 VQRL 99 (243)
Q Consensus 96 ~~~l 99 (243)
.+.|
T Consensus 81 ~~~l 84 (85)
T cd05754 81 TATL 84 (85)
T ss_pred EEEE
Confidence 6654
No 162
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.44 E-value=1.7e-12 Score=79.69 Aligned_cols=83 Identities=18% Similarity=0.327 Sum_probs=58.5
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECC--------eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDG--------RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
.+++.+.+|+++.|.|.+. +.|.+.+.|++.+ .......++..........+|+|.+++.+|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~-~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVD-QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEe-cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 4567899999999999995 7788899998632 222233455443322345789999999999999999998
Q ss_pred eCCCcceeEEEEE
Q psy11132 88 NMVAEDTQVQRLI 100 (243)
Q Consensus 88 ~~~~~~~~~~~l~ 100 (243)
+.... +....|.
T Consensus 83 t~~~~-~~~~~l~ 94 (95)
T cd07701 83 TMPVK-TSKAYLT 94 (95)
T ss_pred eecCc-cEEEEEE
Confidence 74333 4444443
No 163
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.43 E-value=4e-12 Score=77.80 Aligned_cols=72 Identities=15% Similarity=0.400 Sum_probs=55.0
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--------cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
..+..+.+|+++.|.|.+. +.|.+.+.|++++..+ ....++...........|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~-g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVK-EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEEe-CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 4567899999999999995 7778899999877532 122333333333335799999999999999999998
Q ss_pred e
Q psy11132 88 N 88 (243)
Q Consensus 88 ~ 88 (243)
.
T Consensus 83 t 83 (95)
T cd05882 83 T 83 (95)
T ss_pred e
Confidence 6
No 164
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.43 E-value=1.7e-12 Score=76.64 Aligned_cols=70 Identities=24% Similarity=0.452 Sum_probs=52.5
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCC----ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSA----ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ 97 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 97 (243)
+.|.|.+..+.|.+.+.|++++..+.... ++... .......|.|.+++..|+|.|+|.+.|..|..+.++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 46999986456778999999998885422 12221 122347899999999999999999999998766554
No 165
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.43 E-value=2.5e-12 Score=78.61 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=54.5
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC-CCCCeeEEEEEEccCcceee-eEEE
Q psy11132 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY-SSKL 195 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~-~~~l 195 (243)
.|..+.|.|.+ .|.|.|.++|++++..+......... ..+.|.|.++. .+|+|.|.|.|.|..|.... .+.|
T Consensus 18 ~~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~~~~~~~----~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 18 TEGKVSVNCRA-RANPFPIYKWRKNNLDIDLTNDRYSM----VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred cCCeEEEeCcC-ccCCCCEEEEEECCEEccCCCCeEEE----ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 35689999999 69999999999999887533222211 13678898875 68999999999999997643 3443
No 166
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.43 E-value=1.6e-12 Score=78.26 Aligned_cols=77 Identities=18% Similarity=0.433 Sum_probs=57.7
Q ss_pred CCeEEEEEEeeCCC--CCceeEEEECCeeecCCCc----eEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132 24 GERASLICSITKGD--IPLTIKWLKDGRYLDNSAA----LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ 97 (243)
Q Consensus 24 g~~~~l~C~~~~~~--~~~~v~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 97 (243)
|+.+.|.|.+. +. |.+.+.|.+++..+..... ..........+.|.|.+++.+|+|.|+|.+.|..+..+.+.
T Consensus 1 Ge~~~L~C~~~-g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVL-TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEE-eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 78999999996 66 7789999987765432211 11111122357899999999999999999999998887777
Q ss_pred EEEE
Q psy11132 98 RLIV 101 (243)
Q Consensus 98 ~l~v 101 (243)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 7765
No 167
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.42 E-value=8.1e-13 Score=77.81 Aligned_cols=58 Identities=22% Similarity=0.532 Sum_probs=48.0
Q ss_pred CCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132 115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 185 (243)
..+.+|++++|.|.+ .+.|. ..+.|++++..+... ...|.|.++ .+|+|.|+|.|.|.
T Consensus 10 ~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~~-----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 10 TTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLETT-----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeecc-----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 567899999999999 46664 579999999887321 357889999 99999999999885
No 168
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.42 E-value=4.6e-12 Score=77.80 Aligned_cols=70 Identities=23% Similarity=0.391 Sum_probs=53.2
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecC-CCCCeeEEEEEEccCcceee
Q psy11132 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~ 191 (243)
..|+.+.|.|.+ .|.|.+.++|+++|..+.......... ..+.|.|.++. ..|.|.|+|.|.|..|....
T Consensus 17 ~~g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~---~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s 87 (94)
T cd05850 17 SPEEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTL---VAGNLVINNPQKARDAGSYQCLAINRCGTVVS 87 (94)
T ss_pred CCCCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEE---ECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence 346789999999 699999999999999886432211111 13568887755 58999999999999997643
No 169
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.42 E-value=1.7e-12 Score=78.88 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=58.7
Q ss_pred cccccCCeEEEEEEeeCCC----CCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132 19 RTLNVGERASLICSITKGD----IPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 94 (243)
..+.+|+++.|.|...++. |.+.+.|+|++.++........ ....|.|.+++.+|+|.|+|.+.+..+...
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 4577899999999875332 5679999999998876543321 367899999999999999999999887654
Q ss_pred eEEEE
Q psy11132 95 QVQRL 99 (243)
Q Consensus 95 ~~~~l 99 (243)
..+..
T Consensus 80 ~~~t~ 84 (92)
T cd05757 80 YNVTR 84 (92)
T ss_pred EEEEE
Confidence 44433
No 170
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.42 E-value=2.2e-12 Score=76.45 Aligned_cols=67 Identities=19% Similarity=0.405 Sum_probs=53.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCC-EEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132 115 DGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 191 (243)
..+..|+.+.|.|.+ .|.|.| .+.|+++|..+.... ....+.|.|..+ .|.|.|.|.|.|..|....
T Consensus 8 ~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 8 LSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDPP-------APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred eEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCCC-------CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 557889999999999 699999 799999999886411 112357888766 5789999999999997643
No 171
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.41 E-value=2.5e-12 Score=75.97 Aligned_cols=67 Identities=30% Similarity=0.565 Sum_probs=49.3
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC----CCCeeEEEEEEccCcceee
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~ 191 (243)
+.|.|.+ .|.|.|.++|++++..+......... .....+.|.|..+.. +|+|.|.|.|.|..|....
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~-~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVT-MKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEE-EeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 4689999 69999999999999987543221111 112256788887753 6899999999999997543
No 172
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.40 E-value=8.2e-12 Score=74.95 Aligned_cols=78 Identities=17% Similarity=0.392 Sum_probs=55.4
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCce--EEE-EeeeeceEEEEeecCCCCCeeEEEEEEeCCC--cceeEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAAL--SIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVA--EDTQVQR 98 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~ 98 (243)
|++++|.|.+. +.|.+.+.|++.++........ ... ......+.|+|.+++.+|+|.|.|.+.+... ....++.
T Consensus 1 Ge~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQ-GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEE-CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 78999999996 6778899999877643221100 000 1112357899999999999999999998766 4566666
Q ss_pred EEEE
Q psy11132 99 LIVN 102 (243)
Q Consensus 99 l~v~ 102 (243)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6664
No 173
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.40 E-value=2.5e-12 Score=78.16 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=60.3
Q ss_pred CCCCCCcEEEEEEeecCC----CCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132 116 GLPEGARTRVICGVTHGD----PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 191 (243)
.+..|....|.|....+. |.+.+.|++++..+........ ..+.|.|.++..+|+|.|+|.|.|..+....
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~ 80 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY 80 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence 456799999999764332 5789999999999876543221 3578999999999999999999999887766
Q ss_pred eEEEEEE
Q psy11132 192 SSKLQVK 198 (243)
Q Consensus 192 ~~~l~v~ 198 (243)
.++..+.
T Consensus 81 ~~t~t~~ 87 (92)
T cd05757 81 NVTRTIS 87 (92)
T ss_pred EEEEEEE
Confidence 6555443
No 174
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.39 E-value=2.5e-12 Score=77.65 Aligned_cols=74 Identities=27% Similarity=0.528 Sum_probs=59.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+.+|++++|.|.+..+.|.+.+.|++++..+.... ....+.|.|.++..+|+|.|.|.|.|..|....++.
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~-------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA-------MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred eEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc-------cccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 4567899999999985457888999999887654321 112467999999999999999999999998887766
Q ss_pred E
Q psy11132 195 L 195 (243)
Q Consensus 195 l 195 (243)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 5
No 175
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.39 E-value=4e-12 Score=74.93 Aligned_cols=67 Identities=25% Similarity=0.476 Sum_probs=48.0
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC----CCCeeEEEEEEccCcceee
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~ 191 (243)
+.|.|.+ .|.|.|+++|++++..+........ ......+.|.|..+.. .|.|.|+|.|.|..|...+
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~-~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKV-TMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCE-EEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 4789999 6999999999999998743222111 1112245677776654 3789999999999997654
No 176
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.38 E-value=4.3e-12 Score=74.94 Aligned_cols=65 Identities=25% Similarity=0.507 Sum_probs=48.4
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC----CCCeeEEEEEEeCCCcc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA----RHSGNYSCTVRNMVAED 93 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~ 93 (243)
+.|.|.+. |.|.+.++|+|++..+.......+.. ....+.|.|.++.. +|+|.|+|.|.|..|..
T Consensus 1 i~l~C~~~-G~P~P~v~W~k~g~~l~~~~~~~~~~-~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAK-GNPPPTFSWTRNGTHFDPEKDPRVTM-KPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCc-ccCCCeEEEEECCeECCCCCCCCEEE-eCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 47999995 88999999999999875433222221 12256788888754 68999999999999864
No 177
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.38 E-value=8.1e-12 Score=73.61 Aligned_cols=65 Identities=28% Similarity=0.446 Sum_probs=47.5
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCC--CCCeeEEeeccceeEEEEeecC----CCCCeeEEEEEEccCcceee
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVS----AAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~n~~g~~~~ 191 (243)
+.|.|.+ .|.|.|.++|++++..+.. ...... ....+.|.|..+. .+|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~---~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSM---RRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEE---eCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 4689999 6999999999999987642 222222 1124678888764 24689999999999997643
No 178
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.36 E-value=6.7e-12 Score=76.45 Aligned_cols=82 Identities=23% Similarity=0.251 Sum_probs=59.8
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCc--eEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC-c
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-E 92 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~ 92 (243)
+....+.+|+.+.|.|.+. + |.+.+.|++++..+..... ..... ....|.|.+++.+|+|.|+|.+.+..+ .
T Consensus 3 ~~~~~v~~g~~v~L~C~~~-~-p~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPK-S-NLASVVWLFQGGPLQRKEEPEERLLV---TEDGLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred ceEEEEECCCcEEEEEeCC-C-CCceEEEEECCcccccccCcCceEEE---cCCCEEEccCCHHHCEEEEEEEecCccce
Confidence 3456688999999999984 5 6679999999987655321 11111 134599999999999999999986544 4
Q ss_pred ceeEEEEEEE
Q psy11132 93 DTQVQRLIVN 102 (243)
Q Consensus 93 ~~~~~~l~v~ 102 (243)
...++.|.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 5666777664
No 179
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.36 E-value=9.6e-12 Score=73.29 Aligned_cols=65 Identities=26% Similarity=0.508 Sum_probs=46.9
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC----CCCeeEEEEEEeCCCcc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA----RHSGNYSCTVRNMVAED 93 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~ 93 (243)
+.|.|.+ .|.|.|.++|+|++..+......... .....+.|.|..+.. .|.|.|+|.|.|..|..
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~-~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVT-MKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAA 69 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEE-EeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeE
Confidence 4799999 48899999999999887432222111 112246788877764 37899999999999874
No 180
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.36 E-value=1.1e-11 Score=75.77 Aligned_cols=80 Identities=25% Similarity=0.464 Sum_probs=56.2
Q ss_pred CCccCCCCCcccc---cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCC-CCCeeEEEE
Q psy11132 10 PKLSPTNPERTLN---VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA-RHSGNYSCT 85 (243)
Q Consensus 10 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~ 85 (243)
|.+...+.+..+. .|+.+.|.|.+. +.|.+.++|++++..+.......... ....|.|.++.. .|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~-g~p~p~i~W~k~~~~l~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~ 77 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRAR-GSPPPTYRWLMNGTEIDDEPDSRYSL---VGGNLVISNPSKAKDAGRYQCL 77 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeee-EcCCCEEEEEECCEECCCCCCCCEEE---ECCEEEEecCCccCCCEEEEEE
Confidence 3444444444443 346799999995 77888999999998884322222111 145788988874 899999999
Q ss_pred EEeCCCcc
Q psy11132 86 VRNMVAED 93 (243)
Q Consensus 86 ~~~~~~~~ 93 (243)
+.|..|..
T Consensus 78 a~N~~G~~ 85 (91)
T cd04967 78 ASNIVGTV 85 (91)
T ss_pred EEcCCCEE
Confidence 99998863
No 181
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=1.9e-11 Score=74.76 Aligned_cols=80 Identities=25% Similarity=0.337 Sum_probs=60.7
Q ss_pred CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCC--CCeeEEee---ccceeEEEEeecCCCC-CeeEEEEEEccCc
Q psy11132 115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSINSVSAAH-SGEYTCVASNTAA 187 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g 187 (243)
..+.+|+++.|.|.+. +.| +..+.|.+.+..+... .++.+... .+..+.|.|.++...| .|.|.|.|.|..|
T Consensus 11 ~~~~~G~~~~L~C~~~-s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 11 QYAVRGERGKVKCFIG-STPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred EEEeCCCcEEEEEEEc-cCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 5567999999999995 555 5578998887766543 33443332 2456889999998767 7899999999999
Q ss_pred ceeeeEEE
Q psy11132 188 QARYSSKL 195 (243)
Q Consensus 188 ~~~~~~~l 195 (243)
.....+.|
T Consensus 90 ~d~~~i~L 97 (98)
T cd05898 90 SGTAIIQL 97 (98)
T ss_pred cceEEEEe
Confidence 99877765
No 182
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=6.1e-12 Score=75.24 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=53.6
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
..+.+|+.++|.|.+..+.+.+.+.|++++..+... ...+.|.|.+++.+|+|.|.|.+.+..+..
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~ 74 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY 74 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence 457889999999998545677899999999866421 124679999999999999999999988743
No 183
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.35 E-value=4.5e-12 Score=75.36 Aligned_cols=69 Identities=28% Similarity=0.370 Sum_probs=50.0
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCC--------CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSP--------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS 193 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~ 193 (243)
+.|.|.+ .|.|.|.+.|++++..... ..+... ...+.|.|.++..+|+|.|.|.|.|..|.. +..+
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL----LSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEE----ecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 4789999 5999999999996442211 111111 124679999999999999999999999976 4555
Q ss_pred EEE
Q psy11132 194 KLQ 196 (243)
Q Consensus 194 ~l~ 196 (243)
.|.
T Consensus 76 ~l~ 78 (79)
T cd05734 76 VLT 78 (79)
T ss_pred EEe
Confidence 554
No 184
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.35 E-value=1.4e-11 Score=72.62 Aligned_cols=63 Identities=24% Similarity=0.531 Sum_probs=46.7
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecC--CCceEEEEeeeeceEEEEeecC----CCCCeeEEEEEEeCCCcc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDN--SAALSITHVDQYNSMLVIDSVS----ARHSGNYSCTVRNMVAED 93 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~ 93 (243)
+.|.|.+. |.|.|.++|+|++..+.. ..++... .....|.|..+. .+|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~-G~P~P~v~W~k~g~~~~~~~~~~~~~~---~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05875 1 IIIECEAK-GNPVPTFQWTRNGKFFNVAKDPRVSMR---RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTA 69 (77)
T ss_pred CEEEEecc-ccCCCEEEEEECCEEccCcCCCcEEEe---CCCceEEEeccCCCCCCCCCEEEEEEEEeccceE
Confidence 46999994 889999999999987642 3333321 125678888764 246999999999999964
No 185
>PHA03376 BARF1; Provisional
Probab=99.35 E-value=3.2e-10 Score=75.48 Aligned_cols=125 Identities=23% Similarity=0.350 Sum_probs=77.9
Q ss_pred CcccccCCeEEEEEEeeC--CCCCceeEEEECC----eee---------cC----CCceEEEEeeeeceEEEEeecCCCC
Q psy11132 18 ERTLNVGERASLICSITK--GDIPLTIKWLKDG----RYL---------DN----SAALSITHVDQYNSMLVIDSVSARH 78 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~--~~~~~~v~W~~~~----~~~---------~~----~~~~~~~~~~~~~~~l~i~~~~~~d 78 (243)
.+.+..|+.+.|+|.... ..+...|+|+|.+ ..+ .+ ..+..+.. +.++.+|.|.+++.+|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~-~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR-SANTFFLVVTAANISH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEe-cCCeEEEEEEeeeecC
Confidence 567888999999998752 2345699999942 211 11 11111111 1246789999999999
Q ss_pred CeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE
Q psy11132 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 145 (243)
Q Consensus 79 ~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~ 145 (243)
.|+|+|.++......-..-.|.+..|-........ .....-+..++.|.+ +|.|.|.++|..+..
T Consensus 99 dGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~-~dFp~~~~~~i~C~s-ggfP~P~~~Wle~~~ 163 (221)
T PHA03376 99 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTV-NAFPHPHVQWLMPEG 163 (221)
T ss_pred CceEEEEEEcCCCceeeeeeeeeeecceEEEEecc-ccCCCCCeeEEEEec-CCcCCchheeccccC
Confidence 99999999875544333333443332222211111 112235777899995 899999999996543
No 186
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.33 E-value=2.6e-11 Score=74.14 Aligned_cols=70 Identities=27% Similarity=0.488 Sum_probs=52.6
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCC-CCCeeEEEEEEccCcceee
Q psy11132 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~~ 191 (243)
..|..+.|.|.+ .|.|.+.++|++++..+.......... ....|.|.++.. +|+|.|+|.|.|..|....
T Consensus 17 ~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~---~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 17 SDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSL---VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEE---ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 345789999999 588999999999999885332221111 135688887764 8999999999999997643
No 187
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.32 E-value=1.4e-11 Score=73.24 Aligned_cols=69 Identities=30% Similarity=0.424 Sum_probs=50.4
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeec--------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc-eeEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLD--------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQ 97 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~ 97 (243)
++|.|.+. |.|.|.+.|++++.... ...++... ...+|.|.+++.+|+|.|.|.|.|..|.. +..+
T Consensus 1 v~l~C~~~-G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAE-GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL----SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCe-EeCCCEEEEEECCCccccccccccccCCCEEEe----cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 57999995 88989999999753221 11222221 25689999999999999999999998874 5555
Q ss_pred EEE
Q psy11132 98 RLI 100 (243)
Q Consensus 98 ~l~ 100 (243)
.|.
T Consensus 76 ~l~ 78 (79)
T cd05734 76 VLT 78 (79)
T ss_pred EEe
Confidence 554
No 188
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.31 E-value=1.2e-11 Score=74.98 Aligned_cols=73 Identities=27% Similarity=0.324 Sum_probs=56.9
Q ss_pred CCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
+...+.+|+.+.|.|....+.|.+.+.|++++..+ ....+.. .....+.|.|.+++.+|+|.|+|.|++....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~---~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF---VSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE---EeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 34668899999999998889999999999998754 2222222 1223578999999999999999999987543
No 189
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.30 E-value=1.3e-11 Score=74.80 Aligned_cols=72 Identities=26% Similarity=0.359 Sum_probs=56.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
..+.+|+.+.|.|....|.|.+.+.|++++..+. ...+.... ...+.|.|.+++.+|+|.|.|.|.|.....
T Consensus 13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~---~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS---QTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe---CCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 4577899999999888899999999999987542 22222221 225789999999999999999999976543
No 190
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.29 E-value=2.6e-11 Score=73.79 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=58.9
Q ss_pred CcccccCCeEEEEEEeeC----------CCCCceeEEEECCeeecCCCceEE--EEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132 18 ERTLNVGERASLICSITK----------GDIPLTIKWLKDGRYLDNSAALSI--THVDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~----------~~~~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
...+.+|+++.|.|.... ......+.|+|++..+........ .........|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 456889999999998621 222348999999755544332111 12222367899999999999999999
Q ss_pred EEeCCCcceeEEEEEE
Q psy11132 86 VRNMVAEDTQVQRLIV 101 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~v 101 (243)
++|........+.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9998876666665543
No 191
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.28 E-value=4.6e-11 Score=73.36 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=55.2
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--------ecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--------PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
..+.+|+++.|.|.+ .+.|.+.+.|++.+. ......+............|.|.+++.+|+|.|.|.+.+..
T Consensus 7 v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~ 85 (95)
T cd07701 7 VTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMP 85 (95)
T ss_pred EEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeec
Confidence 457899999999999 588999999986322 11122223222222345789999999999999999999843
Q ss_pred cceeeeEEEE
Q psy11132 187 AQARYSSKLQ 196 (243)
Q Consensus 187 g~~~~~~~l~ 196 (243)
+ ......|.
T Consensus 86 ~-~~~~~~l~ 94 (95)
T cd07701 86 V-KTSKAYLT 94 (95)
T ss_pred C-ccEEEEEE
Confidence 3 34445544
No 192
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.28 E-value=5.4e-11 Score=72.81 Aligned_cols=80 Identities=16% Similarity=0.340 Sum_probs=56.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--------CCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
..+.+|+++.|.|.+ .+.|.+.+.|++++..+. ...+............|.|.++..+|+|.|+|.+...
T Consensus 7 ~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~- 84 (95)
T cd05882 7 ETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM- 84 (95)
T ss_pred EEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence 457789999999999 588999999998775431 1112222222233578999999999999999999883
Q ss_pred cceeeeEEEE
Q psy11132 187 AQARYSSKLQ 196 (243)
Q Consensus 187 g~~~~~~~l~ 196 (243)
-...+.+++.
T Consensus 85 ~~~~~~~~~~ 94 (95)
T cd05882 85 PVRTAKATVT 94 (95)
T ss_pred ccccEEEEEE
Confidence 2333444443
No 193
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.27 E-value=1.1e-10 Score=72.02 Aligned_cols=83 Identities=17% Similarity=0.346 Sum_probs=56.2
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--------cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
.+...+.+|++++|.|.+. +.+.+.+.|++.+..+ ....++...........|+|.+++.+|+|.|.|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~-~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVK-NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEEC-CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence 4567789999999999985 6667799998633211 112344332222235689999999999999999998
Q ss_pred eCCCcceeEEEEE
Q psy11132 88 NMVAEDTQVQRLI 100 (243)
Q Consensus 88 ~~~~~~~~~~~l~ 100 (243)
.... ......|.
T Consensus 83 ~~~~-~~~~~~~~ 94 (95)
T cd05717 83 TMPV-QTAKATVT 94 (95)
T ss_pred cCCC-ceEEEEEE
Confidence 6543 34444443
No 194
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=7.5e-11 Score=70.51 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=52.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
..+..|+++.|.|.+ .+ +.+++.|+++|..+.......... ...|.|.+++.+|+|.|+|.|.+..
T Consensus 6 ~~v~~G~~v~L~C~~-~~-~~~~i~W~~ng~~i~~~~~r~~~~----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 6 RTFKLGNNAELKCSP-KS-NLARVVWKFDGKVLTPESAKYLLY----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EEEECCCCEEEEEEC-CC-CCCeEEEEECCEECCCCCceEEEE----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 456789999999997 34 678999999999987653222221 3468999999999999999999864
No 195
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.25 E-value=1.2e-10 Score=70.86 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=54.5
Q ss_pred cccccCCeEEEEEEeeCCCCCceeEEEECCe--eec----CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe-CCC
Q psy11132 19 RTLNVGERASLICSITKGDIPLTIKWLKDGR--YLD----NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN-MVA 91 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~----~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~-~~~ 91 (243)
+.+.+|+++.|.|.. +.|.+.+.|++.+. ... ...+... ....|.|.+++.+|+|.|+|.+.+ ..+
T Consensus 6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~ 78 (91)
T cd05871 6 VYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFS 78 (91)
T ss_pred EEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCe
Confidence 457889999999996 46778999998432 211 1122221 245699999999999999999984 555
Q ss_pred cceeEEEEEEE
Q psy11132 92 EDTQVQRLIVN 102 (243)
Q Consensus 92 ~~~~~~~l~v~ 102 (243)
.....+.|.|.
T Consensus 79 ~~~~~~~l~v~ 89 (91)
T cd05871 79 QTLAKYTLHVI 89 (91)
T ss_pred EEEEEEEEEEe
Confidence 45556677665
No 196
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.25 E-value=1.2e-10 Score=70.16 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=56.8
Q ss_pred CCcEEEEEEeecCCC--CCEEEEEeCCEecCCCC-----CeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132 120 GARTRVICGVTHGDP--PLTIRWLKDGKPLSPRF-----PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192 (243)
Q Consensus 120 g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 192 (243)
|+++.|.|.+. +.+ ...+.|...+....... ...........+.|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 1 Ge~~~L~C~~~-~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTAR-TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEE-eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence 78999999995 544 56889998776432111 00111112235789999999999999999999999988888
Q ss_pred EEEEEE
Q psy11132 193 SKLQVK 198 (243)
Q Consensus 193 ~~l~v~ 198 (243)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888775
No 197
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.25 E-value=1.1e-10 Score=68.35 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=51.4
Q ss_pred cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe-eccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
.+.|+|....+.|++.+.||+++..+.......... .....+.|.|.....+|++.|+|.|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 368999998999999999999999997542111000 01124679998888899999999999998754
No 198
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.24 E-value=2.7e-11 Score=68.94 Aligned_cols=63 Identities=32% Similarity=0.627 Sum_probs=46.0
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeee-ceEEEEeecCCCCCeeEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY-NSMLVIDSVSARHSGNYSCTV 86 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~ 86 (243)
|+.++|.|.+....+...+.|++++................. ...|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 789999999944677789999999876654333222221111 123999999999999999986
No 199
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.24 E-value=1.1e-10 Score=70.30 Aligned_cols=79 Identities=22% Similarity=0.396 Sum_probs=55.6
Q ss_pred CCeEEEEEEeeCC-CCCceeEEEECCeeecC---CC--ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132 24 GERASLICSITKG-DIPLTIKWLKDGRYLDN---SA--ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ 97 (243)
Q Consensus 24 g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~---~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 97 (243)
|+++.|.|.+.+. .+...+.|.+.+..... .. +..........+.|.|.+++.+|+|.|+|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 7899999999622 33468899987764321 11 111111122357899999999999999999999888777777
Q ss_pred EEEEE
Q psy11132 98 RLIVN 102 (243)
Q Consensus 98 ~l~v~ 102 (243)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 200
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.24 E-value=2.3e-10 Score=69.51 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=66.8
Q ss_pred CCCCCCCcEEEEEEeecCCCCCE-EEEEeCCEecCCCCCeeEEee----ccceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
..+..|+.+.|.|.+ .++|+|+ +.|.+++..+........... ..+.+.|.+..+..++.|.|+|.|.|..++.
T Consensus 13 ~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 13 IFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 457789999999999 6999987 999999886654433222222 2356889999999999999999999999999
Q ss_pred eeeEEEEEE
Q psy11132 190 RYSSKLQVK 198 (243)
Q Consensus 190 ~~~~~l~v~ 198 (243)
+.++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 988888875
No 201
>smart00409 IG Immunoglobulin.
Probab=99.24 E-value=4.4e-10 Score=67.75 Aligned_cols=82 Identities=30% Similarity=0.606 Sum_probs=62.3
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV 96 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 96 (243)
...+.+|+++.|.|.+. +.+...+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 45678899999999996 556779999998 77776445544443322 4789999999999999999999777765555
Q ss_pred EEEEE
Q psy11132 97 QRLIV 101 (243)
Q Consensus 97 ~~l~v 101 (243)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 55554
No 202
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.24 E-value=4.4e-10 Score=67.75 Aligned_cols=82 Identities=30% Similarity=0.606 Sum_probs=62.3
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV 96 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 96 (243)
...+.+|+++.|.|.+. +.+...+.|+++ +..+....+........ ...|.|.+++..|+|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 45678899999999996 556779999998 77776445544443322 4789999999999999999999777765555
Q ss_pred EEEEE
Q psy11132 97 QRLIV 101 (243)
Q Consensus 97 ~~l~v 101 (243)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 55554
No 203
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.24 E-value=4.9e-11 Score=72.20 Aligned_cols=78 Identities=22% Similarity=0.385 Sum_probs=58.9
Q ss_pred CCccCC-CCCcccccCCeEEEEEEeeCCCCCceeEEEECCee-ecCCCceEEEEeeeeceEEEEeecCCCCCe-eEEEEE
Q psy11132 10 PKLSPT-NPERTLNVGERASLICSITKGDIPLTIKWLKDGRY-LDNSAALSITHVDQYNSMLVIDSVSARHSG-NYSCTV 86 (243)
Q Consensus 10 p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~~ 86 (243)
|.+... .+.+.+.+|+.+.|.|....+.|.+.|.|++++.. +....++.+. .++.|.|.+++.+|.| .|.|.|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~~D~g~~Y~C~a 78 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEEQDSHPDYICHA 78 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEehhhCCCCeEEEE
Confidence 344433 45678999999999998657999999999987654 3333443322 2578999999999999 899999
Q ss_pred EeCCC
Q psy11132 87 RNMVA 91 (243)
Q Consensus 87 ~~~~~ 91 (243)
.+...
T Consensus 79 ~~~~~ 83 (95)
T cd05845 79 HFPGL 83 (95)
T ss_pred Ecccc
Confidence 98654
No 204
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.22 E-value=1.5e-10 Score=65.52 Aligned_cols=63 Identities=51% Similarity=0.822 Sum_probs=50.1
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
+|+++.|.|.+ .+.+.+.+.|++++..+... .. .......|.|.++..+|+|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~--~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPES--NR---LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECCCC--CE---EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 48899999997 68888999999999887721 11 112246799999999999999999998754
No 205
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.21 E-value=1.9e-10 Score=67.25 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=50.3
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEE-eeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-VDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
++|+|...++.|++.|+||+++.++.......... .-...+.|.+.....+|.+.|+|.|.|+.+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 78999998899999999999999986532111110 0012457999988899999999999998775
No 206
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.21 E-value=1.1e-10 Score=71.02 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=57.2
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCC--eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc-ceee
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARY 191 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~~ 191 (243)
..+..|+.+.|.|.+ .+ |.+.+.|++++..+..... ..... ....|.|.+++.+|+|.|.|.|.+..+ ....
T Consensus 6 ~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~ 80 (89)
T cd04979 6 VTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLV---TEDGLLIRSVSPADAGVYTCQSVEHGFKQTLA 80 (89)
T ss_pred EEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEE---cCCCEEEccCCHHHCEEEEEEEecCccceeEe
Confidence 345789999999998 45 7789999999987665421 11111 124488999999999999999997654 4455
Q ss_pred eEEEEEE
Q psy11132 192 SSKLQVK 198 (243)
Q Consensus 192 ~~~l~v~ 198 (243)
+..|.|.
T Consensus 81 ~~~l~V~ 87 (89)
T cd04979 81 TYSLNVL 87 (89)
T ss_pred EEEEEEe
Confidence 6666664
No 207
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.19 E-value=1.9e-10 Score=65.01 Aligned_cols=63 Identities=37% Similarity=0.631 Sum_probs=49.2
Q ss_pred cCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
+|+.+.|.|.+ .+.+.+.+.|++++..+.. ... .......|.|.+++..|+|.|+|.+.+..+
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~--~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPE--SNR---LSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECCC--CCE---EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58899999997 4777789999999887762 111 112256899999999999999999987643
No 208
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.19 E-value=9.5e-11 Score=71.30 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=50.9
Q ss_pred ccccCCeEEEEEEeeCCCCCceeEEEECCeeecC--------------CCceEEEE--eeeeceEEEEeecCCCCCeeEE
Q psy11132 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDN--------------SAALSITH--VDQYNSMLVIDSVSARHSGNYS 83 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~ 83 (243)
.+.+|++|+|+|.++ +.+.+.+.|++++..... ..++.... ...+...|+|.+++.+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~s-~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeC-CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 467899999999985 667789999976633211 11111111 1223568999999999999999
Q ss_pred EEEEeCCCc
Q psy11132 84 CTVRNMVAE 92 (243)
Q Consensus 84 C~~~~~~~~ 92 (243)
|.+.+..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999876553
No 209
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.19 E-value=1.8e-10 Score=68.69 Aligned_cols=71 Identities=30% Similarity=0.626 Sum_probs=54.7
Q ss_pred cccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC-cceeEE
Q psy11132 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQ 97 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~ 97 (243)
..+.+|+.+.|.|.+. +.|...+.|++++..+.... ..+.+..++.+|.|.|+|.+.+..+ ..+..+
T Consensus 9 ~~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSSQ-----------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEES-----------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeeee-----------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 5588999999999996 77778999999987766321 1267788999999999999998554 345555
Q ss_pred EEEE
Q psy11132 98 RLIV 101 (243)
Q Consensus 98 ~l~v 101 (243)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 5554
No 210
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.19 E-value=7.1e-10 Score=67.44 Aligned_cols=72 Identities=18% Similarity=0.309 Sum_probs=53.8
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCeee--------cCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
.+++.+.+|++++|+|.+. +.....+.|++.+..+ ....++..........+|+|.+++.+|+|.|.|.+.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~-~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVK-NNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred cCceEEcCCCcEEEEEEEc-cCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 3467899999999999995 5445578888765332 234556555433446789999999999999999997
Q ss_pred e
Q psy11132 88 N 88 (243)
Q Consensus 88 ~ 88 (243)
.
T Consensus 83 t 83 (95)
T cd05881 83 T 83 (95)
T ss_pred c
Confidence 5
No 211
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.18 E-value=5.5e-10 Score=67.87 Aligned_cols=85 Identities=22% Similarity=0.295 Sum_probs=66.4
Q ss_pred CCcccccCCeEEEEEEeeCCCCCce-eEEEECCeeecCCCceEEEEe----eeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 17 PERTLNVGERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHV----DQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
....+.+|+.+.|.|.+. ..|++. +.|.+++..+........... ....+.|.+.++..+|.|.|+|.+.|+..
T Consensus 11 ~~~~v~~gE~~~L~V~ie-AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYE-AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEE-eCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 356689999999999995 778776 999999876644332111211 12458999999999999999999999999
Q ss_pred cceeEEEEEEE
Q psy11132 92 EDTQVQRLIVN 102 (243)
Q Consensus 92 ~~~~~~~l~v~ 102 (243)
..+.++.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 88888888774
No 212
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.18 E-value=1e-10 Score=66.50 Aligned_cols=63 Identities=37% Similarity=0.670 Sum_probs=46.9
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc-eeEEEEeecCCCCCeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF-SSLLSINSVSAAHSGEYTCVA 182 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~ 182 (243)
|+++.|.|.+..+.+...+.|++++................. ...|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 789999999955778899999999887664433222221111 123999999999999999986
No 213
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.16 E-value=2.1e-10 Score=69.64 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=52.5
Q ss_pred cccccCCeEEEEEEeeC----CCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 19 RTLNVGERASLICSITK----GDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
..+.+|.+..|.|.-.. ..+.+.+.|||++.++....... .... ....|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-EecC-CCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 34678899999997322 23556999999999886543211 1111 1457999999999999999999988654
No 214
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.15 E-value=1.4e-10 Score=70.26 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCe-eEEEEEEccCc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAA 187 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 187 (243)
..+.+|+.+.|.|....|.|.|.+.|+.++...-........ ...+.|.|.++..+|+| .|.|.|.|...
T Consensus 13 v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~---~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 13 VEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSM---GQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred eEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEE---CCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 567899999999985579999999999876543322222111 12478999999999999 89999999753
No 215
>smart00409 IG Immunoglobulin.
Probab=99.15 E-value=2.3e-09 Score=64.57 Aligned_cols=80 Identities=36% Similarity=0.625 Sum_probs=61.3
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeC-CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
.+..|+++.|.|.+. +.+.+.+.|+++ +..+............. ...|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 5 ~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 5 TVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 456899999999995 568889999998 77776343333333222 578999999999999999999988887766666
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 654
No 216
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.15 E-value=2.3e-09 Score=64.57 Aligned_cols=80 Identities=36% Similarity=0.625 Sum_probs=61.3
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeC-CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
.+..|+++.|.|.+. +.+.+.+.|+++ +..+............. ...|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 5 ~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 5 TVKEGESVTLSCEVS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEc-cCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 456899999999995 568889999998 77776343333333222 578999999999999999999988887766666
Q ss_pred EEE
Q psy11132 195 LQV 197 (243)
Q Consensus 195 l~v 197 (243)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 654
No 217
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.13 E-value=6.2e-10 Score=66.09 Aligned_cols=64 Identities=27% Similarity=0.437 Sum_probs=51.2
Q ss_pred CCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
....+.+|+++.|.|... + +...+.|++++..+....++... ...|.|..++..|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~-s-~~A~v~W~~ng~~l~~~~r~~~~-----~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLR-S-NLASPVWLFNGTPLNAQFSYRVG-----TDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCC-C-CCccEEEEECCcccCCCcceEEe-----CCCCEEEECCHhhCEEEEEEEe
Confidence 356789999999999973 3 45699999999988765544333 3448899999999999999987
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.13 E-value=4.8e-10 Score=68.13 Aligned_cols=73 Identities=25% Similarity=0.267 Sum_probs=53.3
Q ss_pred CCCCCCcEEEEEEeecC----CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132 116 GLPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 190 (243)
.+..|....|.|.-..+ .+.++++|||++..+.......... ...+.|.|.++..+|+|.|+|.|.+..|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~--~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL--KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec--CCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 34678999999963233 3677999999999887543222110 1135699999999999999999999876553
No 219
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.11 E-value=1.6e-09 Score=66.80 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec--------CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
..+.+|+++.|.|.+ .+.+.+.+.|++.+..+ ....++...........|.|.+++.+|+|.|.|.+.+..
T Consensus 7 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 7 VTVVEGGTATLKCRV-KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEEcCCCCEEEEEEE-CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 457789999999999 57788899998532211 011122221222234679999999999999999999765
Q ss_pred cceeeeEEEE
Q psy11132 187 AQARYSSKLQ 196 (243)
Q Consensus 187 g~~~~~~~l~ 196 (243)
. ....+.|.
T Consensus 86 ~-~~~~~~~~ 94 (95)
T cd05717 86 V-QTAKATVT 94 (95)
T ss_pred C-ceEEEEEE
Confidence 3 34444444
No 220
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.11 E-value=6.7e-10 Score=67.71 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCCCCCcEEEEEEeec----------CCCCCEEEEEeCCEecCCCCCeeEE--eeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132 116 GLPEGARTRVICGVTH----------GDPPLTIRWLKDGKPLSPRFPVNVS--DLDSFSSLLSINSVSAAHSGEYTCVAS 183 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~----------~~p~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~ 183 (243)
.+.+|+.+.|.|.... ......+.|+|++..+......... ........|.|.++..+|+|.|+|.+.
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~r 90 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLR 90 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEEC
Confidence 4578999999998521 2224589999997555443321110 111224679999999999999999999
Q ss_pred ccCcceeeeEEEEE
Q psy11132 184 NTAAQARYSSKLQV 197 (243)
Q Consensus 184 n~~g~~~~~~~l~v 197 (243)
|.....+.++.|+|
T Consensus 91 N~t~C~~~~i~l~V 104 (104)
T cd05896 91 NSTYCMKVSMSLTV 104 (104)
T ss_pred CCCcceEEEEEEEC
Confidence 98877777766654
No 221
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.09 E-value=2.6e-09 Score=63.87 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=47.8
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec----cceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 191 (243)
+.|.|.+.++.|.+.++|+++|..+...........+ ...+.|.+.....+|.|.|+|.|.|.......
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~ 74 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGK 74 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCc
Confidence 6899999656788899999999987643221111111 11356778777777888999999998754433
No 222
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.09 E-value=1.1e-09 Score=66.53 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=52.7
Q ss_pred CCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecCC----CCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc-cCcce
Q psy11132 117 LPEGARTRVICGVTHGDPPLTIRWLKDGK--PLSP----RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN-TAAQA 189 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~ 189 (243)
..+|+++.|.|.. +.|.+.+.|++.+. .... ...... ....|.|.+++.+|+|.|.|.|.+ ..+..
T Consensus 8 ~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~ 80 (91)
T cd05871 8 GVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT 80 (91)
T ss_pred EecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence 5689999999986 47889999998432 2111 111111 135599999999999999999984 55555
Q ss_pred eeeEEEEEE
Q psy11132 190 RYSSKLQVK 198 (243)
Q Consensus 190 ~~~~~l~v~ 198 (243)
...+.|.|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 566666665
No 223
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.09 E-value=7.6e-10 Score=67.34 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=50.8
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEec-CCC-------------CCeeEE--eeccceeEEEEeecCCCCCeeEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPR-------------FPVNVS--DLDSFSSLLSINSVSAAHSGEYT 179 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~-~~~-------------~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~ 179 (243)
.+.+|++++|.|.. .+.+.+.+.|++++... ... .+.... ........|.|.++..+|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 35689999999998 57888999999776332 110 001111 11223467999999999999999
Q ss_pred EEEEccCcc
Q psy11132 180 CVASNTAAQ 188 (243)
Q Consensus 180 C~~~n~~g~ 188 (243)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999997654
No 224
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.08 E-value=3.5e-10 Score=67.43 Aligned_cols=71 Identities=35% Similarity=0.678 Sum_probs=53.9
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc-ceeeeE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSS 193 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~~~~~~ 193 (243)
..+.+|+.+.|.|.+. +.|.+.+.|++++..+.... ..+.+..+..+|+|.|+|.+.+..+ ..+..+
T Consensus 9 ~~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~-----------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSSQ-----------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp SEEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEES-----------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeeee-----------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 4467899999999994 88889999999987666221 1166778889999999999999665 334555
Q ss_pred EEEE
Q psy11132 194 KLQV 197 (243)
Q Consensus 194 ~l~v 197 (243)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 5554
No 225
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.06 E-value=2.6e-09 Score=67.33 Aligned_cols=80 Identities=20% Similarity=0.352 Sum_probs=54.7
Q ss_pred cCCeEEEEEEeeCC-----CCCceeEEEECCe---e----e-cC----------CCceEEEEeeeeceEEEEeecCCCCC
Q psy11132 23 VGERASLICSITKG-----DIPLTIKWLKDGR---Y----L-DN----------SAALSITHVDQYNSMLVIDSVSARHS 79 (243)
Q Consensus 23 ~g~~~~l~C~~~~~-----~~~~~v~W~~~~~---~----~-~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~ 79 (243)
.|++|+|.|.+... .....+.|+|... + + .. ..+..+........+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999998533 2345799998541 0 1 00 12222221112356899999999999
Q ss_pred eeEEEEEEeCCCcceeEEEEEEE
Q psy11132 80 GNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 80 G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999887777777777775
No 226
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.05 E-value=1.6e-09 Score=66.05 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=53.1
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM 89 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 89 (243)
|.+...+ ...+.+|++|+|.|.. ..+...+.|+++|....... .........+.|.+++.+|+|.|+|...+.
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 5555555 3468899999999986 45566899999987533211 111223567999999999999999999875
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.03 E-value=5.9e-09 Score=62.36 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=46.6
Q ss_pred eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEE-Eee---eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVD---QYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
++.|.|.+.++.|.+.+.|+++|..+......... ..+ ...+.|.+.....+|.|.|+|.+.+....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~ 71 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALP 71 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCC
Confidence 36899999766788899999999987643221111 111 11356778777777889999999987654
No 228
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.02 E-value=5.3e-09 Score=65.87 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=55.2
Q ss_pred cCCeEEEEEEeeCCC-----CCceeEEEECC---e---ee-c-CCC----------ceEEEEeeeeceEEEEeecCCCCC
Q psy11132 23 VGERASLICSITKGD-----IPLTIKWLKDG---R---YL-D-NSA----------ALSITHVDQYNSMLVIDSVSARHS 79 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~-----~~~~v~W~~~~---~---~~-~-~~~----------~~~~~~~~~~~~~l~i~~~~~~d~ 79 (243)
.|++|+|.|.+.... ....+.|++.. . .+ . ... +...........+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999986332 24699999862 1 11 0 010 111111123468999999999999
Q ss_pred eeEEEEEEeCCCcceeEEEEEEEc
Q psy11132 80 GNYSCTVRNMVAEDTQVQRLIVNV 103 (243)
Q Consensus 80 G~Y~C~~~~~~~~~~~~~~l~v~~ 103 (243)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999998766677778887753
No 229
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.01 E-value=7.3e-10 Score=65.10 Aligned_cols=75 Identities=28% Similarity=0.463 Sum_probs=48.4
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
||.+...+.......+. +.|+|.+..+.+.+.++|+ +..... ...........+.|.|.++..+|.|.|+|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~---~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSF---NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEE---EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCce---eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 35555554444343333 9999999644447899999 111111 111122223367899999999999999999986
No 230
>KOG3515|consensus
Probab=98.99 E-value=4.9e-09 Score=84.92 Aligned_cols=229 Identities=21% Similarity=0.238 Sum_probs=128.3
Q ss_pred eEEEecCCCccCCCCCcccccCCeEEEEEEee-CCCCCceeEEEECCeeecCCC--ceEE----EEee-eeceEEEEeec
Q psy11132 3 VIFSTVPPKLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSA--ALSI----THVD-QYNSMLVIDSV 74 (243)
Q Consensus 3 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~v~W~~~~~~~~~~~--~~~~----~~~~-~~~~~l~i~~~ 74 (243)
.+.+.++|.-...........+..+.+.|.+. .+.|.+.+.|..+........ ...+ .... ...+.+.+...
T Consensus 91 ~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~ 170 (741)
T KOG3515|consen 91 ILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS 170 (741)
T ss_pred eeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE
Confidence 45666777655554455667788999999543 466778999999876543211 0000 0001 22567888888
Q ss_pred CCCCCeeEEEEEEeC---CCcceeEEEEEEEcCCCcccc--ccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCC
Q psy11132 75 SARHSGNYSCTVRNM---VAEDTQVQRLIVNVPPKIESF--AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP 149 (243)
Q Consensus 75 ~~~d~G~Y~C~~~~~---~~~~~~~~~l~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 149 (243)
+.++.|.|+|.+.+. .........+.+..+...... ........+|+.+.|.|.+..+.|.+.++|+++......
T Consensus 171 Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 171 RKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE 250 (741)
T ss_pred EecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence 899999999999874 233333344444333222111 111145678999999999888999999999998877654
Q ss_pred CCC-eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeec---CCCCCeeeeeccceeeeccCccc-
Q psy11132 150 RFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNL---NRLPPSYTLVFSQASYMSTSYYS- 224 (243)
Q Consensus 150 ~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~---~~~~p~~~~~~~~~~~~~~~~~~- 224 (243)
... ......+...+.+.+..-..++.-...|.+.| .... +..+.+..++ +..++...+..+.+.-+.|....
T Consensus 251 ~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~--~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss 327 (741)
T KOG3515|consen 251 SSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAA--SQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSS 327 (741)
T ss_pred hhcccCCCCCCcccccccccccccchhhhhhccccC-cccc--ceeeecccccccccccCcccccccccccccceeccCC
Confidence 311 11111111223343333233334478899998 2211 1112222111 11233333444555555553332
Q ss_pred --ccccceEEeC
Q psy11132 225 --FEQDSWMIDN 234 (243)
Q Consensus 225 --~~~~~W~~~~ 234 (243)
...+.|+++.
T Consensus 328 ~p~~~i~w~~~~ 339 (741)
T KOG3515|consen 328 KPPAHIAWYKDT 339 (741)
T ss_pred CCccceeeeccC
Confidence 2378999854
No 231
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.99 E-value=5.6e-09 Score=63.66 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=50.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 185 (243)
..+..|++++|.|.. ..+...+.|+++|....... .........|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 567899999999986 36778999999987544211 112233577999999999999999999986
No 232
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.97 E-value=1.2e-08 Score=59.90 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=52.1
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEE--EeeeeceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT--HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNV 103 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~ 103 (243)
+.|.|.+.++.|...|+|++++.++......... ......+.|.+.....+|...|+|.+.|+... ......|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 6899999889999999999999998764221101 11122467777655555555999999987643 44555666653
No 233
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.96 E-value=2.2e-08 Score=60.97 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=50.7
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec--------CCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 185 (243)
..+.+|+++.|.|.+ .+.....+.|++.+..+ ....++...........|.|.+++.+|.|.|.|.+...
T Consensus 7 vtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 7 VTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred eEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 567899999999999 46556667887655322 23333444433455678999999999999999999763
No 234
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.96 E-value=1.7e-08 Score=64.12 Aligned_cols=77 Identities=18% Similarity=0.343 Sum_probs=52.1
Q ss_pred CCCcccccCCeEEEEEEeeCCC---CCceeEEEE---------------CCeeec-C----CCceEEEEe-eeeceEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGD---IPLTIKWLK---------------DGRYLD-N----SAALSITHV-DQYNSMLVI 71 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~---~~~~v~W~~---------------~~~~~~-~----~~~~~~~~~-~~~~~~l~i 71 (243)
+.++.+..|+.+.|.|.+.... +...+.|.+ +|.... . ..|..+... ...+.+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3456688999999999986432 346999933 232221 1 123332221 234689999
Q ss_pred eecCCCCCeeEEEEEEeCCCc
Q psy11132 72 DSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 72 ~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
.+++.+|.|.|+|.+.|....
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999987664
No 235
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.95 E-value=1.5e-08 Score=64.01 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=55.0
Q ss_pred cCCeEEEEEEeeCCCC---------CceeEEEECC--eeec-----------C---CCceEEEE--eeeeceEEEEeecC
Q psy11132 23 VGERASLICSITKGDI---------PLTIKWLKDG--RYLD-----------N---SAALSITH--VDQYNSMLVIDSVS 75 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~---------~~~v~W~~~~--~~~~-----------~---~~~~~~~~--~~~~~~~l~i~~~~ 75 (243)
.|++++|+|.+....+ ...+.|++.. .... . ..|..+.. ......+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999999864332 3589999852 2110 0 11222211 22346889999999
Q ss_pred CCCCeeEEEEEEeCCCcceeEEEEEEEc
Q psy11132 76 ARHSGNYSCTVRNMVAEDTQVQRLIVNV 103 (243)
Q Consensus 76 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 103 (243)
.+|+|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999988666677778887753
No 236
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.95 E-value=1.2e-08 Score=63.37 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=50.3
Q ss_pred CeEEEEEEeeCCC--CCceeEEEECCee----e-----------cC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132 25 ERASLICSITKGD--IPLTIKWLKDGRY----L-----------DN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 25 ~~~~l~C~~~~~~--~~~~v~W~~~~~~----~-----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
++|+|.|.+.... ....+.|+|.... + .+ ..+..+........+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999986433 2458999985431 0 01 11112111111367999999999999999999
Q ss_pred EEe-CCCcceeEEEEEE
Q psy11132 86 VRN-MVAEDTQVQRLIV 101 (243)
Q Consensus 86 ~~~-~~~~~~~~~~l~v 101 (243)
+.. +.|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5566666676665
No 237
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.94 E-value=2e-08 Score=63.27 Aligned_cols=81 Identities=15% Similarity=0.295 Sum_probs=55.4
Q ss_pred CCCcEEEEEEeecC-----CCCCEEEEEeCCEe--------cCC----------CCCeeEEeeccceeEEEEeecCCCCC
Q psy11132 119 EGARTRVICGVTHG-----DPPLTIRWLKDGKP--------LSP----------RFPVNVSDLDSFSSLLSINSVSAAHS 175 (243)
Q Consensus 119 ~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~--------~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~ 175 (243)
.|++++|.|..... .....+.|++.... +.. ..+............|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999988422 12457999985411 000 01111111112246799999999999
Q ss_pred eeEEEEEEccCcceeeeEEEEEEe
Q psy11132 176 GEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 176 g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999988888888888874
No 238
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.94 E-value=2.1e-08 Score=58.96 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=50.0
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe--eccceeEEEEeecCCCCCeeEEEEEEccCcc-eeeeEEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQV 197 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~l~v 197 (243)
+.|.|.+.++.|++.+.||+++..+.......... .....+.|.|..-..+|...|+|.|.|+.-. ......|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 68999998889999999999999987653221111 1123467878654455555999999997642 233344444
No 239
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.93 E-value=4.1e-08 Score=61.76 Aligned_cols=88 Identities=24% Similarity=0.422 Sum_probs=54.9
Q ss_pred EEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCeeEEeecc--c--eeEEEEeecCCCCC
Q psy11132 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS--F--SSLLSINSVSAAHS 175 (243)
Q Consensus 101 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~ 175 (243)
|..+|..+...........|+.++|.|.+.+.+|. ..++|++||..+...........+. + .+.|.+.. ...|.
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~ 80 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDV 80 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccc
Confidence 34456655554443445678889999999877774 7999999999986533222211221 1 23455543 34444
Q ss_pred e-eEEEEEEccCcce
Q psy11132 176 G-EYTCVASNTAAQA 189 (243)
Q Consensus 176 g-~y~C~~~n~~g~~ 189 (243)
| .|+|.+.+.....
T Consensus 81 ~~~ytC~V~H~~l~~ 95 (111)
T cd05772 81 HSQVTCEVQHRTLQA 95 (111)
T ss_pred cCceEEEEEeCCCCC
Confidence 4 5999999975443
No 240
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.93 E-value=1.3e-08 Score=63.37 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=51.7
Q ss_pred CCcccccCCeEEEEEEeeCCCCCceeEEEECCee-----e---cCC-------CceEEEEeeeeceEEEEeecCCCCCee
Q psy11132 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRY-----L---DNS-------AALSITHVDQYNSMLVIDSVSARHSGN 81 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~---~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G~ 81 (243)
....+.+|+++.|.|... ......+.|+|+... + ... ..+..+..-..+++|.|.++++.|+|.
T Consensus 6 ~p~~~~~G~~V~L~v~~~-p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~ 84 (105)
T cd05774 6 VPPQVAEGENVLLLVHNL-PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF 84 (105)
T ss_pred cCCcccCCCCEEEEecCC-CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence 344578999999999753 334459999996321 1 000 001111111225789999999999999
Q ss_pred EEEEEEeCCCc-ceeEEEE
Q psy11132 82 YSCTVRNMVAE-DTQVQRL 99 (243)
Q Consensus 82 Y~C~~~~~~~~-~~~~~~l 99 (243)
|+|.+.+.... ....+.|
T Consensus 85 Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 85 YTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEeCCccEEEEEEEE
Confidence 99999887643 3444444
No 241
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.93 E-value=7.1e-09 Score=65.71 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=53.1
Q ss_pred CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCee--e------------cCCCceEEEEe-eeeceEEEEeecCCCCC
Q psy11132 15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRY--L------------DNSAALSITHV-DQYNSMLVIDSVSARHS 79 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~--~------------~~~~~~~~~~~-~~~~~~l~i~~~~~~d~ 79 (243)
.+..+.+.+|++++|.|.+. +.+...+.|++.... . ....++.+... ......|+|.+++.+|+
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYS-TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred cCCceEEcCCCCEEEEEEEC-CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 35567789999999999995 446679999985321 0 11233333221 12467899999999999
Q ss_pred eeEEEEEEeCC
Q psy11132 80 GNYSCTVRNMV 90 (243)
Q Consensus 80 G~Y~C~~~~~~ 90 (243)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998654
No 242
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.91 E-value=1.8e-08 Score=63.50 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=54.0
Q ss_pred cCCeEEEEEEeeCCCC-----------CceeEEEECC--ee---ec---------C--CCceEEEE--eeeeceEEEEee
Q psy11132 23 VGERASLICSITKGDI-----------PLTIKWLKDG--RY---LD---------N--SAALSITH--VDQYNSMLVIDS 73 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~-----------~~~v~W~~~~--~~---~~---------~--~~~~~~~~--~~~~~~~l~i~~ 73 (243)
.|++++|.|.+....+ .+.|.|+|.. .. +. + ..|..+.. ....+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999999864321 3589999842 11 10 0 11333322 123578999999
Q ss_pred cCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
++.+|+|.|+|.+.+........+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999766666666666664
No 243
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.91 E-value=7e-09 Score=65.77 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=51.2
Q ss_pred CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCe--eec--------------C--CCceEEEEeeeeceEEEEeecCC
Q psy11132 15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGR--YLD--------------N--SAALSITHVDQYNSMLVIDSVSA 76 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~--~~~--------------~--~~~~~~~~~~~~~~~l~i~~~~~ 76 (243)
.+....+.+|++++|.|.+. + +...+.|||... .+. . ..++...........|.|.+++.
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~-~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQT-S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred CCCceEEcCCCcEEEEEEEC-C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 45567789999999999985 4 556899998532 110 0 12233222222357899999999
Q ss_pred CCCeeEEEEEEeC
Q psy11132 77 RHSGNYSCTVRNM 89 (243)
Q Consensus 77 ~d~G~Y~C~~~~~ 89 (243)
+|+|.|.|.+.+.
T Consensus 82 ~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 82 EDSAVYLCASSLG 94 (110)
T ss_pred hhCEEEEEEeeCC
Confidence 9999999998754
No 244
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.90 E-value=1.8e-08 Score=62.22 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=52.8
Q ss_pred ccCCeEEEEEEeeCCCCCceeEEEECCeeec--C-----------CCceE-EEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 22 NVGERASLICSITKGDIPLTIKWLKDGRYLD--N-----------SAALS-ITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~--~-----------~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
..|++|+|+|..........+.|++....+. . ...+. .......+.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 4799999999875324456899998643221 0 01111 11112335889999999999999999998
Q ss_pred eCCCc-ceeEEEEEE
Q psy11132 88 NMVAE-DTQVQRLIV 101 (243)
Q Consensus 88 ~~~~~-~~~~~~l~v 101 (243)
...+. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 77654 355565554
No 245
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.88 E-value=2.1e-08 Score=61.36 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=52.4
Q ss_pred ccCCCCCcccccCCeEEEEEEeeCCCCCce--eEEEECCeeecCCCceEE-EEeeeeceEEEEeecCCCCCe-eEEEEEE
Q psy11132 12 LSPTNPERTLNVGERASLICSITKGDIPLT--IKWLKDGRYLDNSAALSI-THVDQYNSMLVIDSVSARHSG-NYSCTVR 87 (243)
Q Consensus 12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~--v~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G-~Y~C~~~ 87 (243)
+.+.+....+.+|+.++|.|.+.++.|... |.||+++..+........ ........+|++. +.++|.| .|+|.+.
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~ 82 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETE 82 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEE
Confidence 334444445789999999999988888875 799999998865321110 0011124566665 4566666 9999998
Q ss_pred eCCC
Q psy11132 88 NMVA 91 (243)
Q Consensus 88 ~~~~ 91 (243)
....
T Consensus 83 l~l~ 86 (100)
T cd05755 83 LDLR 86 (100)
T ss_pred eccC
Confidence 7554
No 246
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.87 E-value=2.2e-08 Score=62.37 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=50.8
Q ss_pred CCeEEEEEEeeCCC--CCceeEEEECCe--ee---cC------------CCceEEEE--eeeeceEEEEeecCCCCCeeE
Q psy11132 24 GERASLICSITKGD--IPLTIKWLKDGR--YL---DN------------SAALSITH--VDQYNSMLVIDSVSARHSGNY 82 (243)
Q Consensus 24 g~~~~l~C~~~~~~--~~~~v~W~~~~~--~~---~~------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y 82 (243)
|++|+|+|.+.... ....+.|++... .+ .. ..+..+.. ......+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999985221 124788988542 11 00 01222211 112357899999999999999
Q ss_pred EEEEEeCCCcceeEEEEEE
Q psy11132 83 SCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 83 ~C~~~~~~~~~~~~~~l~v 101 (243)
+|.+.+..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987766666666665
No 247
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.87 E-value=2.3e-08 Score=61.79 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=51.1
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCee----ec-----C--------CCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRY----LD-----N--------SAALSITHVDQYNSMLVIDSVSARHSGNYSCTV 86 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~----~~-----~--------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 86 (243)
|++++|.|..........+.|+|.... +. . ..+..+........+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998743323347999984321 10 0 111122122234678999999999999999988
Q ss_pred E-eCCCcceeEEEEEE
Q psy11132 87 R-NMVAEDTQVQRLIV 101 (243)
Q Consensus 87 ~-~~~~~~~~~~~l~v 101 (243)
. .+.|.....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 6 45666677777765
No 248
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.87 E-value=7.4e-09 Score=68.59 Aligned_cols=68 Identities=21% Similarity=0.377 Sum_probs=54.9
Q ss_pred EEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee-------ccceeeeccCcccc-c---ccceEE
Q psy11132 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV-------FSQASYMSTSYYSF-E---QDSWMI 232 (243)
Q Consensus 164 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~-~---~~~W~~ 232 (243)
.|.|.+++.+|+|.|.|.+.+..+.....+.|.|. .||.+.+. .+....+.|....+ | .+.|++
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-----~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~ 76 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-----EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR 76 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-----cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence 58899999999999999999988888888899888 56665433 34556789988775 3 689999
Q ss_pred eCCe
Q psy11132 233 DNEN 236 (243)
Q Consensus 233 ~~~~ 236 (243)
+|..
T Consensus 77 ~g~~ 80 (139)
T cd05771 77 EPPG 80 (139)
T ss_pred CCCC
Confidence 9854
No 249
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.87 E-value=4.2e-08 Score=65.89 Aligned_cols=88 Identities=18% Similarity=0.318 Sum_probs=62.2
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeee----------cC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYL----------DN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
...+.+|++++|.|....+...+.+.|+|....+ .+ ..+..+.........|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 4568999999999997435456689999864322 11 12333222233468999999999999999998
Q ss_pred EEe-CCC-cceeEEEEEEEcCC
Q psy11132 86 VRN-MVA-EDTQVQRLIVNVPP 105 (243)
Q Consensus 86 ~~~-~~~-~~~~~~~l~v~~~p 105 (243)
+.. +.| ..+....|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 764 456 67778888887643
No 250
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.87 E-value=1.7e-08 Score=63.50 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=49.5
Q ss_pred ccccCCeEEEEEEeeCCCCCceeEEEECCee-----e------------cCCCceEEEEee-eeceEEEEeecCCCCCee
Q psy11132 20 TLNVGERASLICSITKGDIPLTIKWLKDGRY-----L------------DNSAALSITHVD-QYNSMLVIDSVSARHSGN 81 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~------------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~ 81 (243)
.+.+|++++|.|.+....+...+.|++.... + ....+..+.... ....+|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 4778999999999963325668999984321 1 011233322222 145789999999999999
Q ss_pred EEEEEEeCCC
Q psy11132 82 YSCTVRNMVA 91 (243)
Q Consensus 82 Y~C~~~~~~~ 91 (243)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999986554
No 251
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.84 E-value=6.1e-08 Score=59.68 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=51.2
Q ss_pred eEEEEEEeeCCCCC---ceeEEEECC--e--ee---c----------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132 26 RASLICSITKGDIP---LTIKWLKDG--R--YL---D----------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 26 ~~~l~C~~~~~~~~---~~v~W~~~~--~--~~---~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
+++|.|.+....+. ..|.|.+.. . .+ . ...|..+......+.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68899998633332 269998742 1 11 0 112333332233468999999999999999999
Q ss_pred EEe-CCCcceeEEEEEE
Q psy11132 86 VRN-MVAEDTQVQRLIV 101 (243)
Q Consensus 86 ~~~-~~~~~~~~~~l~v 101 (243)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6777777777776
No 252
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.84 E-value=2.4e-08 Score=61.14 Aligned_cols=68 Identities=22% Similarity=0.219 Sum_probs=45.8
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecC--------------CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeC
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDN--------------SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNM 89 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 89 (243)
|++|+|.|.+. ......+.|+++...... ...+..+..-..+.+|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~-~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNL-PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccC-CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 78999999985 455569999986532210 001111111112478999999999999999999876
Q ss_pred CCc
Q psy11132 90 VAE 92 (243)
Q Consensus 90 ~~~ 92 (243)
.+.
T Consensus 80 ~~~ 82 (92)
T cd05741 80 NGV 82 (92)
T ss_pred CCc
Confidence 543
No 253
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.83 E-value=5.2e-08 Score=59.66 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=51.6
Q ss_pred CCCCCCCcEEEEEEeecCCCCCE--EEEEeCCEecCCCCCeeE-EeeccceeEEEEeecCCCCCe-eEEEEEEccCcce
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQA 189 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~ 189 (243)
..+.+|+.++|.|.+.++.|.+. +.||+++..+........ ........++.+. +..+|.| .|+|.|.+..+..
T Consensus 11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRPE 88 (100)
T ss_pred CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCcc
Confidence 34678999999999988888886 799999998875422110 0112224566665 4556666 9999999977654
No 254
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.83 E-value=3.7e-08 Score=60.35 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=49.5
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
|.+...+ ..++.+|++|+|.|... . ....+.|+|+|........ ...........+.|..++.+|+|.|.|...
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~~~~~~~-~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSD-I-RFDRFILYKEGRSKPVLHL-YEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecC-C-CCCEEEEEECCCCCCceec-ccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4444433 45588999999999874 2 4458999998865322110 000012225678999999999999999975
No 255
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.82 E-value=5.4e-08 Score=62.03 Aligned_cols=76 Identities=20% Similarity=0.377 Sum_probs=49.6
Q ss_pred CCCcccccCCeEEEEEEeeCCCC---CceeEEEEC----Cee--e----c-----CCC----ceEEE-EeeeeceEEEEe
Q psy11132 16 NPERTLNVGERASLICSITKGDI---PLTIKWLKD----GRY--L----D-----NSA----ALSIT-HVDQYNSMLVID 72 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~----~~~--~----~-----~~~----~~~~~-~~~~~~~~l~i~ 72 (243)
+..+.+.+|++++|.|.+....+ ...+.|++. +.. + . ... +..+. .....+.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 45677899999999999853322 246999852 111 1 0 011 11111 112235789999
Q ss_pred ecCCCCCeeEEEEEEeCCC
Q psy11132 73 SVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 73 ~~~~~d~G~Y~C~~~~~~~ 91 (243)
+++.+|+|.|.|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999997655
No 256
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.81 E-value=7.9e-08 Score=58.65 Aligned_cols=77 Identities=16% Similarity=0.276 Sum_probs=52.2
Q ss_pred CeEEEEEEeeCCCCCceeEEEECCe----eec-------------CCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 25 ERASLICSITKGDIPLTIKWLKDGR----YLD-------------NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 25 ~~~~l~C~~~~~~~~~~v~W~~~~~----~~~-------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
++++|+|..........++|.|... .+. -..+..+......+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4689999985434445899987421 110 11233343333447899999999999999999975
Q ss_pred -eCCCcceeEEEEEE
Q psy11132 88 -NMVAEDTQVQRLIV 101 (243)
Q Consensus 88 -~~~~~~~~~~~l~v 101 (243)
.+.|.......|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 46677777777765
No 257
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.79 E-value=8e-08 Score=61.49 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=49.5
Q ss_pred CCCcccccCCeEEEEEEeeCCCC---CceeEEEECCe------ee-c---------CCC----ceEEEE-eeeeceEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGDI---PLTIKWLKDGR------YL-D---------NSA----ALSITH-VDQYNSMLVI 71 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~---~~~v~W~~~~~------~~-~---------~~~----~~~~~~-~~~~~~~l~i 71 (243)
+..+.+.+|++++|.|.+....+ ...+.|++... .+ . ... +..+.. ......+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 44566889999999998853322 25799986321 11 0 011 111111 1123478999
Q ss_pred eecCCCCCeeEEEEEEeCCCc
Q psy11132 72 DSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 72 ~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
.+++.+|+|.|.|.+.+....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999976553
No 258
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.79 E-value=1.1e-07 Score=59.76 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCCcEEEEEEeecC-----CCCCEEEEEeCC---E-e--c-C-CCCCe--------eE--EeeccceeEEEEeecCCCCC
Q psy11132 119 EGARTRVICGVTHG-----DPPLTIRWLKDG---K-P--L-S-PRFPV--------NV--SDLDSFSSLLSINSVSAAHS 175 (243)
Q Consensus 119 ~g~~~~l~C~~~~~-----~p~~~~~W~~~~---~-~--~-~-~~~~~--------~~--~~~~~~~~~l~i~~~~~~d~ 175 (243)
.|++++|.|..... .....+.|++.. . . + . ..... .. .........|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999998532 125699999862 1 0 0 0 00000 00 01123457899999999999
Q ss_pred eeEEEEEEccCcceeeeEEEEEEe
Q psy11132 176 GEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 176 g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877778888888874
No 259
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.78 E-value=1e-07 Score=56.85 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=44.6
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeecc---ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
+.|.|.+.++.|++.+.|++++..+............+ ..+.|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 68999998778999999999999886432111111111 12445555444555679999999987543
No 260
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.78 E-value=6.7e-08 Score=61.91 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=51.0
Q ss_pred CCCCcccccCCeEEEEEEeeCC-CCCceeEEEECC--eee------c-----------CCCceEEEEeee-eceEEEEee
Q psy11132 15 TNPERTLNVGERASLICSITKG-DIPLTIKWLKDG--RYL------D-----------NSAALSITHVDQ-YNSMLVIDS 73 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~--~~~------~-----------~~~~~~~~~~~~-~~~~l~i~~ 73 (243)
.+..+.+.+|++++|.|.+... .+...+.||+.. ... . ...++.+..... ....|+|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 3456678899999999998531 456789999842 111 0 123333332221 357899999
Q ss_pred cCCCCCeeEEEEEEe
Q psy11132 74 VSARHSGNYSCTVRN 88 (243)
Q Consensus 74 ~~~~d~G~Y~C~~~~ 88 (243)
++.+|+|.|.|.+..
T Consensus 84 ~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 84 LEKEDSATYYCAYWE 98 (116)
T ss_pred CCHHHCEEEEEEEec
Confidence 999999999999864
No 261
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.77 E-value=3.7e-08 Score=61.97 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCCCcccccCCeEEEEEEeeCCCC-CceeEEEECC--ee---ec---------CCCceEEEEeeeeceEEEEeecCCCCC
Q psy11132 15 TNPERTLNVGERASLICSITKGDI-PLTIKWLKDG--RY---LD---------NSAALSITHVDQYNSMLVIDSVSARHS 79 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 79 (243)
.+....+.+|++++|.|.+. +.. ...+.|||.. .. +. ...++.... ......|.|.+++.+|+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~-~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 6 SPATLSVSPGESATISCKAS-QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG-SGTDFTLTISRVEPEDA 83 (106)
T ss_pred CCCcEEECCCCCEEEEEEEC-CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec-cCCEEEEEECCCChHHC
Confidence 35566789999999999984 333 4589999843 11 10 012333221 22346799999999999
Q ss_pred eeEEEEEEe
Q psy11132 80 GNYSCTVRN 88 (243)
Q Consensus 80 G~Y~C~~~~ 88 (243)
|.|.|.+.+
T Consensus 84 g~Y~Ca~~~ 92 (106)
T cd04980 84 AVYYCQQYG 92 (106)
T ss_pred EEEEEEEeC
Confidence 999999864
No 262
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.77 E-value=7.7e-08 Score=57.17 Aligned_cols=63 Identities=29% Similarity=0.516 Sum_probs=48.5
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 184 (243)
..+..|+.+.|.|.. .+ +.+.+.|++++..+......... ..-|.|..++.+|+|.|.|.+.-
T Consensus 6 ~tv~~g~~v~L~C~~-~s-~~A~v~W~~ng~~l~~~~r~~~~-----~~GLlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 6 RTVAPGADVVLPCQL-RS-NLASPVWLFNGTPLNAQFSYRVG-----TDGLLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEecCCCEEEECCC-CC-CCccEEEEECCcccCCCcceEEe-----CCCCEEEECCHhhCEEEEEEEec
Confidence 456789999999987 33 46799999999988754333222 22377899999999999999873
No 263
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.76 E-value=1.5e-07 Score=58.33 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=50.2
Q ss_pred CcEEEEEEeecCC--CCCEEEEEeCCEe----c-----------CCC--CCeeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132 121 ARTRVICGVTHGD--PPLTIRWLKDGKP----L-----------SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181 (243)
Q Consensus 121 ~~~~l~C~~~~~~--p~~~~~W~~~~~~----~-----------~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 181 (243)
+++.|.|...... ....+.|++.... + ... .+............|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999885333 2457999985431 0 000 0011111111356899999999999999999
Q ss_pred EEc-cCcceeeeEEEEE
Q psy11132 182 ASN-TAAQARYSSKLQV 197 (243)
Q Consensus 182 ~~n-~~g~~~~~~~l~v 197 (243)
+.. +.|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6688888887776
No 264
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.75 E-value=1.7e-07 Score=59.07 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=54.9
Q ss_pred CCCcEEEEEEeecCCC-----------CCEEEEEeCCE--e---c---------CCC--CCeeEEe--eccceeEEEEee
Q psy11132 119 EGARTRVICGVTHGDP-----------PLTIRWLKDGK--P---L---------SPR--FPVNVSD--LDSFSSLLSINS 169 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p-----------~~~~~W~~~~~--~---~---------~~~--~~~~~~~--~~~~~~~l~i~~ 169 (243)
.|++++|.|......+ .+.+.|++... . + ... .+..... .......|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999998853321 36899997421 0 0 001 0111111 122467899999
Q ss_pred cCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132 170 VSAAHSGEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 170 ~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
++.+|+|.|.|.+.+........+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998777777888888774
No 265
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.74 E-value=1.6e-07 Score=56.01 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=43.3
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeee----eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ----YNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
+.|.|.+.++.|.+.++|++++..+.... ........ ..+.|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999998788888999999999886433 11111111 1234555444445567999999987654
No 266
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.74 E-value=1.6e-07 Score=58.42 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=49.7
Q ss_pred CCcEEEEEEeecCC--CCCEEEEEeCCEe-----------cCC----C--CCeeEEe--eccceeEEEEeecCCCCCeeE
Q psy11132 120 GARTRVICGVTHGD--PPLTIRWLKDGKP-----------LSP----R--FPVNVSD--LDSFSSLLSINSVSAAHSGEY 178 (243)
Q Consensus 120 g~~~~l~C~~~~~~--p~~~~~W~~~~~~-----------~~~----~--~~~~~~~--~~~~~~~l~i~~~~~~d~g~y 178 (243)
|+++.|.|...... ....+.|++.... ... . .+..... .......|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 68899999874221 1246888875421 100 0 0111110 112346799999999999999
Q ss_pred EEEEEccCcceeeeEEEEE
Q psy11132 179 TCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 179 ~C~~~n~~g~~~~~~~l~v 197 (243)
.|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998777777777765
No 267
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.72 E-value=2.6e-07 Score=58.04 Aligned_cols=79 Identities=24% Similarity=0.330 Sum_probs=53.3
Q ss_pred CCeEEEEEEeeCCC------CCceeEEEECC-----eee---c-----------CCCceEEEE--eeeeceEEEEeecCC
Q psy11132 24 GERASLICSITKGD------IPLTIKWLKDG-----RYL---D-----------NSAALSITH--VDQYNSMLVIDSVSA 76 (243)
Q Consensus 24 g~~~~l~C~~~~~~------~~~~v~W~~~~-----~~~---~-----------~~~~~~~~~--~~~~~~~l~i~~~~~ 76 (243)
|++++|+|.+.... ..+.+.|.+.. ... . ...|..+.. ...++.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999975221 24689999741 111 0 012222222 112468999999999
Q ss_pred CCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 77 RHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
+|+|.|.|.+..........+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866667777788775
No 268
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.71 E-value=3.8e-07 Score=57.40 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=52.0
Q ss_pred EecCCCccCC-CCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEEeee----eceEEEEeecCCCCC
Q psy11132 6 STVPPKLSPT-NPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQ----YNSMLVIDSVSARHS 79 (243)
Q Consensus 6 v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~ 79 (243)
|..+|..... ........|+.++|.|.+.+..|. ..++|++||..+...........+. ..+.|.+.. ...|.
T Consensus 2 v~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~ 80 (111)
T cd05772 2 VRAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDV 80 (111)
T ss_pred cccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccc
Confidence 4556655433 233345578889999999877775 6999999999886432211111111 123454443 34444
Q ss_pred e-eEEEEEEeCCCc
Q psy11132 80 G-NYSCTVRNMVAE 92 (243)
Q Consensus 80 G-~Y~C~~~~~~~~ 92 (243)
| .|+|.+.+....
T Consensus 81 ~~~ytC~V~H~~l~ 94 (111)
T cd05772 81 HSQVTCEVQHRTLQ 94 (111)
T ss_pred cCceEEEEEeCCCC
Confidence 4 599999986543
No 269
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.71 E-value=1.5e-07 Score=59.60 Aligned_cols=71 Identities=17% Similarity=0.224 Sum_probs=50.0
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEec--------------CCCCCeeEEe-eccceeEEEEeecCCCCCeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------------SPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYT 179 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~--------------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~ 179 (243)
..+.+|+++.|.|.+. +.+...+.|++....- ....+..... .......|.|.+++.+|+|.|.
T Consensus 8 v~~~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 8 LSVQEGENVTLNCNYS-TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred eEEcCCCCEEEEEEEC-CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence 4578999999999994 5578899999853210 0111222221 1234678999999999999999
Q ss_pred EEEEccC
Q psy11132 180 CVASNTA 186 (243)
Q Consensus 180 C~~~n~~ 186 (243)
|.+.+..
T Consensus 87 C~~~~~~ 93 (109)
T cd04983 87 CALSESG 93 (109)
T ss_pred EEEecCC
Confidence 9999764
No 270
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.71 E-value=2.6e-07 Score=55.09 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=45.9
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc----eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF----SSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
+.|.|.+.+++|++.++|+++|..+...........++. .+.|.+.....++...|+|.|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 679999987789999999999998875433222221211 244556555566677999999998753
No 271
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.70 E-value=1e-08 Score=60.15 Aligned_cols=57 Identities=37% Similarity=0.695 Sum_probs=39.9
Q ss_pred EEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132 123 TRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184 (243)
Q Consensus 123 ~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 184 (243)
+.|.|.+. +.+ .+.++|+ +..... ...........+.|.|.++..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~-~~~~~~~~~W~-~~~~~~---~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAE-GGPPPPSISWY-DSNPSF---NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEES-SEESSEEEEEE-TEEEEE---EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEc-cccCCeEEEEE-ecCCce---eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 99999995 555 8899999 111100 011112223357899999999999999999987
No 272
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.70 E-value=3.1e-07 Score=57.83 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=54.0
Q ss_pred CCeEEEEEEeeCCC----------CCceeEEEEC-----Ce-----ee------------cCCCceEEEE--eeeeceEE
Q psy11132 24 GERASLICSITKGD----------IPLTIKWLKD-----GR-----YL------------DNSAALSITH--VDQYNSML 69 (243)
Q Consensus 24 g~~~~l~C~~~~~~----------~~~~v~W~~~-----~~-----~~------------~~~~~~~~~~--~~~~~~~l 69 (243)
|++++|+|.+.... ..+.|+|++- +. .+ ....+..+.. ...++.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999986221 1348999873 11 11 0112223221 12346899
Q ss_pred EEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 70 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
.|.+++.+|+|.|+|.+..........+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999887777777888775
No 273
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.70 E-value=4e-07 Score=54.29 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=44.3
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeee-----eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ-----YNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
+.|+|.+.++.|...|+|+++|..+..... ....... ..+.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999987788899999999998865432 1111111 1244555455556667999999987653
No 274
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.69 E-value=3.5e-07 Score=55.89 Aligned_cols=74 Identities=15% Similarity=0.335 Sum_probs=48.0
Q ss_pred CeEEEEEEeeCCCCCceeEEEECCe----ee-----------cC--CCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE
Q psy11132 25 ERASLICSITKGDIPLTIKWLKDGR----YL-----------DN--SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR 87 (243)
Q Consensus 25 ~~~~l~C~~~~~~~~~~v~W~~~~~----~~-----------~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 87 (243)
+.++|.|..........+.|.|... .+ .. ..|..+......+.+|+|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4689999985444456899998432 11 01 1233333322346899999999999999999986
Q ss_pred e-CCCcceeEEE
Q psy11132 88 N-MVAEDTQVQR 98 (243)
Q Consensus 88 ~-~~~~~~~~~~ 98 (243)
. +.|.....+.
T Consensus 81 t~P~g~~~~~i~ 92 (96)
T cd05889 81 TYPQGSWEKVIE 92 (96)
T ss_pred eCCCCCeEEEEE
Confidence 5 4555544443
No 275
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.69 E-value=3.8e-07 Score=56.63 Aligned_cols=76 Identities=14% Similarity=0.304 Sum_probs=49.3
Q ss_pred eEEEEEEeeCCC-C-CceeEEEECCe---e--e---c--------C--CCceEEEEe-eeeceEEEEeecCCCCCeeEEE
Q psy11132 26 RASLICSITKGD-I-PLTIKWLKDGR---Y--L---D--------N--SAALSITHV-DQYNSMLVIDSVSARHSGNYSC 84 (243)
Q Consensus 26 ~~~l~C~~~~~~-~-~~~v~W~~~~~---~--~---~--------~--~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C 84 (243)
+++|+|...... + ...+.|+|... + + . . ..+..+... ...+.+|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999985322 1 34899998321 1 1 0 0 123333321 2346789999999999999999
Q ss_pred EEEe-CCCcceeEEEEEE
Q psy11132 85 TVRN-MVAEDTQVQRLIV 101 (243)
Q Consensus 85 ~~~~-~~~~~~~~~~l~v 101 (243)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9986 5565566666665
No 276
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.68 E-value=1.3e-07 Score=58.60 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=48.5
Q ss_pred ccccCCeEEEEEEeeCCCCCceeEEEECCee-----e--------cCCCceEEEE-eeeeceEEEEeecCCCCCeeEEEE
Q psy11132 20 TLNVGERASLICSITKGDIPLTIKWLKDGRY-----L--------DNSAALSITH-VDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~--------~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
.+.+|++++|.|..........+.|+|.... + ....+..+.. .......|+|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5788999999999853345568899985421 1 0122333321 123357899999999999999998
Q ss_pred EEeCC
Q psy11132 86 VRNMV 90 (243)
Q Consensus 86 ~~~~~ 90 (243)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87543
No 277
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.67 E-value=3.4e-07 Score=57.03 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=51.0
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC--------CC-C------CeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--------PR-F------PVNVSDLDSFSSLLSINSVSAAHSGEYT 179 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--------~~-~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 179 (243)
..+.+|+++.|.|... ......+.|+|+..... .. . .+.....-..+++|.|.+++.+|+|.|+
T Consensus 8 ~~~~~G~~V~L~v~~~-p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 8 PQVAEGENVLLLVHNL-PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CcccCCCCEEEEecCC-CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence 4567899999999642 23345999999632110 00 0 0000000112468999999999999999
Q ss_pred EEEEccC-cceeeeEEEE
Q psy11132 180 CVASNTA-AQARYSSKLQ 196 (243)
Q Consensus 180 C~~~n~~-g~~~~~~~l~ 196 (243)
|.+.+.. ......+.|.
T Consensus 87 ~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 87 LQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEeCCccEEEEEEEEE
Confidence 9999977 3445555554
No 278
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.67 E-value=1.5e-07 Score=60.30 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=51.5
Q ss_pred CCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--ee---e---------cCCCceEEEE-eeeeceEEEEeecCCCC
Q psy11132 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RY---L---------DNSAALSITH-VDQYNSMLVIDSVSARH 78 (243)
Q Consensus 14 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~---~---------~~~~~~~~~~-~~~~~~~l~i~~~~~~d 78 (243)
..+..+.+.+|++++|.|..........+.|++.. .. + ....++.+.. ......+|+|.+++.+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34556678999999999998533345689999832 11 1 0123344332 12335789999999999
Q ss_pred CeeEEEEEEe
Q psy11132 79 SGNYSCTVRN 88 (243)
Q Consensus 79 ~G~Y~C~~~~ 88 (243)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999874
No 279
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.67 E-value=3.1e-07 Score=54.69 Aligned_cols=66 Identities=18% Similarity=0.342 Sum_probs=44.7
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec-c---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-S---FSSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
+.|.|.+.+++|++.++|+++|..+............ + ..+.|.+.....++...|+|.|.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999877899999999999998654322211111 1 1245666544455566999999987644
No 280
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.67 E-value=3.5e-07 Score=57.77 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=54.3
Q ss_pred CCCcEEEEEEeecCCC---------CCEEEEEeCC--Eec------------CCC--CCeeEE--eeccceeEEEEeecC
Q psy11132 119 EGARTRVICGVTHGDP---------PLTIRWLKDG--KPL------------SPR--FPVNVS--DLDSFSSLLSINSVS 171 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p---------~~~~~W~~~~--~~~------------~~~--~~~~~~--~~~~~~~~l~i~~~~ 171 (243)
.|++++|.|......+ ...+.|++.. ... ... .+.... ........|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3889999998853221 3679999852 110 000 011111 112345779999999
Q ss_pred CCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132 172 AAHSGEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 172 ~~d~g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
.+|+|.|.|.+..........+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999999777778888888874
No 281
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.67 E-value=3.2e-07 Score=56.21 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=47.9
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 184 (243)
..+..|++++|.|... . +...+.|+|+|......... ..........+.|..++.+|+|.|.|....
T Consensus 10 ~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~~~~~~~~-~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 10 PVVPSGENVTLQCHSD-I-RFDRFILYKEGRSKPVLHLY-EKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CccCCCCeEEEEEecC-C-CCCEEEEEECCCCCCceecc-cccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 5678999999999873 3 55689999988764321100 011123356789999999999999999863
No 282
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.66 E-value=3e-07 Score=54.74 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=44.3
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
++|.|.+.+++|...++|+++|..+............ ...+.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899999878888999999999987653322211111 11345666544455566999999876543
No 283
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.65 E-value=2.6e-07 Score=56.97 Aligned_cols=80 Identities=13% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCCcEEEEEEeecCCCCCEEEEEeCCEecC--CC----CC-------e-eEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLS--PR----FP-------V-NVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--~~----~~-------~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 183 (243)
..|++++|.|....+.....+.|++....+. .. .. + ...........|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 4699999999874324566899998643221 10 00 0 111122335789999999999999999999
Q ss_pred ccCcce-eeeEEEEE
Q psy11132 184 NTAAQA-RYSSKLQV 197 (243)
Q Consensus 184 n~~g~~-~~~~~l~v 197 (243)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 887643 45555554
No 284
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.64 E-value=2.7e-07 Score=58.01 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=48.9
Q ss_pred CCCCCCcEEEEEEeecCC-CCCEEEEEeCCEe--c---------------CCCCCeeEEeec-cceeEEEEeecCCCCCe
Q psy11132 116 GLPEGARTRVICGVTHGD-PPLTIRWLKDGKP--L---------------SPRFPVNVSDLD-SFSSLLSINSVSAAHSG 176 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~--~---------------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g 176 (243)
.+..|+++.|.|.+. +. +...+.|++.... . ....+....... .....|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYS-GSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEe-CCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 356899999999995 54 6778999984331 0 001112222111 14568999999999999
Q ss_pred eEEEEEEccCc
Q psy11132 177 EYTCVASNTAA 187 (243)
Q Consensus 177 ~y~C~~~n~~g 187 (243)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999998765
No 285
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.64 E-value=4.8e-07 Score=53.15 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=52.1
Q ss_pred ccccCCeEEEEEEeeCC-CCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEE
Q psy11132 20 TLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR 98 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 98 (243)
.+..|++++|+|....+ .|.+.++|...+..... .......+|.+..+...|+|.++|.+..........+.
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~ 82 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD 82 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence 47789999999998433 33459999976544221 11123678999999999999999999755444444455
Q ss_pred EEE
Q psy11132 99 LIV 101 (243)
Q Consensus 99 l~v 101 (243)
+.|
T Consensus 83 V~V 85 (88)
T cd07694 83 IKV 85 (88)
T ss_pred EEE
Confidence 544
No 286
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.63 E-value=2.9e-07 Score=58.31 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=48.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--ecC--------------C--CCCeeEEeeccceeEEEEeecCCCCCe
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS--------------P--RFPVNVSDLDSFSSLLSINSVSAAHSG 176 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~~~--------------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g 176 (243)
..+.+|++++|.|.+. + +...+.|||... ... . ..+............|.|.+++.+|+|
T Consensus 8 ~~v~~G~~v~l~C~~~-~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 8 LIKGRGQSVTLRCSQT-S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred eEEcCCCcEEEEEEEC-C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 5578999999999984 5 678899998532 110 0 011111111123578999999999999
Q ss_pred eEEEEEEccC
Q psy11132 177 EYTCVASNTA 186 (243)
Q Consensus 177 ~y~C~~~n~~ 186 (243)
.|.|.+.+..
T Consensus 86 ~Y~Ca~~~~~ 95 (110)
T cd05899 86 VYLCASSLGG 95 (110)
T ss_pred EEEEEeeCCC
Confidence 9999998754
No 287
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.62 E-value=3.1e-07 Score=56.85 Aligned_cols=68 Identities=16% Similarity=0.319 Sum_probs=46.3
Q ss_pred ccccCCeEEEEEEeeCC-CCCceeEEEECCe--eec------------CCCceEEEEeeeeceEEEEeecCCCCCeeEEE
Q psy11132 20 TLNVGERASLICSITKG-DIPLTIKWLKDGR--YLD------------NSAALSITHVDQYNSMLVIDSVSARHSGNYSC 84 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~-~~~~~v~W~~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 84 (243)
.+.+|++++|.|.+... .....+.||+... ... ...++..... .....|+|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-GNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCChhhCEEEEE
Confidence 47899999999998532 1445799998432 110 0123333222 235789999999999999999
Q ss_pred EEEe
Q psy11132 85 TVRN 88 (243)
Q Consensus 85 ~~~~ 88 (243)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 8864
No 288
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.61 E-value=1.2e-06 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=32.1
Q ss_pred ceeEEEEeecCCCCCeeEEEEEEc-cCcceeeeEEEEE
Q psy11132 161 FSSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV 197 (243)
Q Consensus 161 ~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~l~v 197 (243)
....|.|.+++.+|.|.|.|.+.+ +.|+.+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 347899999999999999999999 6787777777776
No 289
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.61 E-value=3.3e-07 Score=56.04 Aligned_cols=75 Identities=16% Similarity=0.094 Sum_probs=48.9
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCC--------------CeeEEeeccceeEEEEeecCCCCCeeEEEEEEcc
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--------------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--------------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 185 (243)
|++++|.|... ......+.|++......... .+...........|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~~-~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNL-PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccC-CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 78999999884 56667999998654322110 0000000112377999999999999999999987
Q ss_pred Ccc-eeeeEEE
Q psy11132 186 AAQ-ARYSSKL 195 (243)
Q Consensus 186 ~g~-~~~~~~l 195 (243)
.+. ....+.|
T Consensus 80 ~~~~~~~~~~l 90 (92)
T cd05741 80 NGVTENAKFFL 90 (92)
T ss_pred CCcEEEEEEEE
Confidence 643 3344444
No 290
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.60 E-value=6.3e-07 Score=55.34 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=50.7
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEe----c---C--C------C--CCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKP----L---S--P------R--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~----~---~--~------~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 182 (243)
|++++|.|..........+.|++.... + . . . .+............|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 789999998743322347999974321 0 0 0 0 01111112234577999999999999999998
Q ss_pred E-ccCcceeeeEEEEE
Q psy11132 183 S-NTAAQARYSSKLQV 197 (243)
Q Consensus 183 ~-n~~g~~~~~~~l~v 197 (243)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 46677777777776
No 291
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.60 E-value=2.6e-07 Score=56.88 Aligned_cols=71 Identities=21% Similarity=0.348 Sum_probs=48.3
Q ss_pred ccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCc-eEEEEeee----eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 22 NVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAA-LSITHVDQ----YNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 22 ~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
..|+.+.|.|.+.+..| .+.+.|+++|..+..... ........ ..+.|.+......+.|.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 46899999999975546 468999999998865432 11111111 1245666666566999999999986553
No 292
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.58 E-value=5.1e-07 Score=55.58 Aligned_cols=71 Identities=27% Similarity=0.431 Sum_probs=48.4
Q ss_pred CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCC-eeEE-eeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP-VNVS-DLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~-~~~~-~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
..|+.+.|.|.+.+..| .+.++|+++|..+..... .... ..++. .+.|.+.....++.+.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 36899999999964446 579999999998875542 1111 11111 244666655556899999999997653
No 293
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.57 E-value=1.1e-06 Score=55.86 Aligned_cols=75 Identities=13% Similarity=0.252 Sum_probs=48.6
Q ss_pred CCCCCCCcEEEEEEeecCC---CCCEEEEEe---------------CCEecCCC-----CCeeEEee-ccceeEEEEeec
Q psy11132 115 DGLPEGARTRVICGVTHGD---PPLTIRWLK---------------DGKPLSPR-----FPVNVSDL-DSFSSLLSINSV 170 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~---p~~~~~W~~---------------~~~~~~~~-----~~~~~~~~-~~~~~~l~i~~~ 170 (243)
..+..|+.+.|.|...... +...+.|.+ +|...... .+...... .....++.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 4457899999999986432 345899933 22222100 11111111 233577999999
Q ss_pred CCCCCeeEEEEEEccCcce
Q psy11132 171 SAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 171 ~~~d~g~y~C~~~n~~g~~ 189 (243)
+.+|.|.|+|.+.|..+..
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred CcccCEEEEEEEEcCCCcC
Confidence 9999999999999987643
No 294
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.55 E-value=3.4e-07 Score=58.36 Aligned_cols=74 Identities=23% Similarity=0.392 Sum_probs=49.5
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEECCe-----eec--------------CCCceEEEEe-eeeceEEEEeecC
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGR-----YLD--------------NSAALSITHV-DQYNSMLVIDSVS 75 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-----~~~--------------~~~~~~~~~~-~~~~~~l~i~~~~ 75 (243)
+..+.+.+|+++.|.|..........+.|++... .+. ...+..+... .....+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 4456688999999999985223445899998322 111 0112222111 1234689999999
Q ss_pred CCCCeeEEEEEEeC
Q psy11132 76 ARHSGNYSCTVRNM 89 (243)
Q Consensus 76 ~~d~G~Y~C~~~~~ 89 (243)
.+|+|.|.|.+...
T Consensus 88 ~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 PSDSGTYFCQVSTS 101 (114)
T ss_dssp GGGEEEEEEEEEES
T ss_pred cCcCEEEEEEEEEC
Confidence 99999999999876
No 295
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.54 E-value=1.8e-06 Score=52.73 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=51.1
Q ss_pred CcEEEEEEeecCCCCCEEEEEeCCE----ecC-----------CC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132 121 ARTRVICGVTHGDPPLTIRWLKDGK----PLS-----------PR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183 (243)
Q Consensus 121 ~~~~l~C~~~~~~p~~~~~W~~~~~----~~~-----------~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 183 (243)
++++|.|..........++|.+... .+. .. .+............|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 4688999885333455899987421 110 00 111121222335789999999999999999975
Q ss_pred -ccCcceeeeEEEEE
Q psy11132 184 -NTAAQARYSSKLQV 197 (243)
Q Consensus 184 -n~~g~~~~~~~l~v 197 (243)
.+.|+.+.++.|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 57788888888876
No 296
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.51 E-value=1.4e-06 Score=58.69 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=60.5
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC----------CC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS----------PR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~----------~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 182 (243)
..+.+|+++.|.|....+...+.+.|+|....+. ++ ++..........+.+.|.+++.+|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4568899999999974355678999998643211 11 11222222334578999999999999999998
Q ss_pred Ec-cCc-ceeeeEEEEEEee
Q psy11132 183 SN-TAA-QARYSSKLQVKGN 200 (243)
Q Consensus 183 ~n-~~g-~~~~~~~l~v~~~ 200 (243)
.- +.| ..+....|.|.+.
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 75 456 6788888888843
No 297
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.50 E-value=2.7e-05 Score=59.11 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=99.1
Q ss_pred EEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEeC
Q psy11132 68 MLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKD 143 (243)
Q Consensus 68 ~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~ 143 (243)
.|.|..++...+|.|+-...+..+. ....+++....+|.+...+ ..+..|+...-.|.+.+.+|+ ..+.||+|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4999999999999999997765553 3455677777778766554 447889999999999777774 47999999
Q ss_pred CEecCCCCCe---eEEeeccce--eEEEEeecCCC-CCeeEEEEEEccCcce-eee----EEEEEEeecCCCCCeeeeec
Q psy11132 144 GKPLSPRFPV---NVSDLDSFS--SLLSINSVSAA-HSGEYTCVASNTAAQA-RYS----SKLQVKGNLNRLPPSYTLVF 212 (243)
Q Consensus 144 ~~~~~~~~~~---~~~~~~~~~--~~l~i~~~~~~-d~g~y~C~~~n~~g~~-~~~----~~l~v~~~~~~~~p~~~~~~ 212 (243)
+..+...... .....++.. +++.+.....+ ..-+.+|.+.-..+.. .+. ..-.|. .+|.+++.-
T Consensus 260 g~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY-----~~P~Isv~F 334 (466)
T PHA03270 260 GDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL-----PRPTIEMEF 334 (466)
T ss_pred CccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc-----cCCeEEEEE
Confidence 9988642221 111122222 33333332211 1237899988644332 222 233344 677777765
Q ss_pred cc-eeeeccCccccc---ccceEEeCCe
Q psy11132 213 SQ-ASYMSTSYYSFE---QDSWMIDNEN 236 (243)
Q Consensus 213 ~~-~~~~~~~~~~~~---~~~W~~~~~~ 236 (243)
++ ..++ +....+ .+.|+.+++.
T Consensus 335 ~dG~AVC--tA~CVPegV~l~W~V~D~~ 360 (466)
T PHA03270 335 GGDEAVC--TAACVPEGVTLAWLLGADP 360 (466)
T ss_pred eCCEEEE--eccccCCCCEEEEEecCCC
Confidence 43 3333 333333 7899887754
No 298
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.50 E-value=2.6e-06 Score=50.11 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCCCCCCcEEEEEEeecC-CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132 115 DGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 193 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 193 (243)
..+..|++++|+|....+ .|.+.+.|+..+...-.. ......+|.+.+++..|+|..+|.+..........+
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee-------ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 346789999999998433 334599999755442211 111246789999999999999999987644455555
Q ss_pred EEEEE
Q psy11132 194 KLQVK 198 (243)
Q Consensus 194 ~l~v~ 198 (243)
.+.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 66554
No 299
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.49 E-value=3.7e-06 Score=52.15 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=48.4
Q ss_pred cEEEEEEeecCCC--CCEEEEEeCCEe-----c---C--------CC--CCeeEEe-eccceeEEEEeecCCCCCeeEEE
Q psy11132 122 RTRVICGVTHGDP--PLTIRWLKDGKP-----L---S--------PR--FPVNVSD-LDSFSSLLSINSVSAAHSGEYTC 180 (243)
Q Consensus 122 ~~~l~C~~~~~~p--~~~~~W~~~~~~-----~---~--------~~--~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C 180 (243)
++.|.|......+ ...+.|++.... + . .. .+..+.. .......|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 5789998753221 348899973211 0 0 00 1112211 12235679999999999999999
Q ss_pred EEEc-cCcceeeeEEEEE
Q psy11132 181 VASN-TAAQARYSSKLQV 197 (243)
Q Consensus 181 ~~~n-~~g~~~~~~~l~v 197 (243)
.+.+ +.|..+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 6677777777765
No 300
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.49 E-value=2e-06 Score=53.26 Aligned_cols=68 Identities=10% Similarity=0.239 Sum_probs=45.9
Q ss_pred CCCCCCcEEEEEEeecCC--CCCEEEEEeCCE--ecC-----------C-CCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132 116 GLPEGARTRVICGVTHGD--PPLTIRWLKDGK--PLS-----------P-RFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~--~~~-----------~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 179 (243)
.+.+|++++|.|... +. ....+.||+... ... . ..+... ........|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~-~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~-~~~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGS-SGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSG-SKSGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEc-CCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEE-EccCCEEEEEECCCChhhCEEEE
Confidence 467899999999984 43 456799997432 111 0 011111 12234567999999999999999
Q ss_pred EEEEcc
Q psy11132 180 CVASNT 185 (243)
Q Consensus 180 C~~~n~ 185 (243)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 998764
No 301
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.48 E-value=1.5e-06 Score=55.58 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=47.8
Q ss_pred CCCCCCCcEEEEEEeecC--CCCCEEEEEeCCE--ec------C-----------CCCCeeEEeecc-ceeEEEEeecCC
Q psy11132 115 DGLPEGARTRVICGVTHG--DPPLTIRWLKDGK--PL------S-----------PRFPVNVSDLDS-FSSLLSINSVSA 172 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~~~--~~------~-----------~~~~~~~~~~~~-~~~~l~i~~~~~ 172 (243)
..+.+|++++|.|.+. + .+...+.||+... .. . ...+........ ....|.|.+++.
T Consensus 8 ~~~~~G~~v~l~C~~~-~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 8 ITREESKSVTISCKVS-GIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred EEeCCCCCEEEEEEEe-CCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 4567899999999984 5 5678999998421 11 0 011122222221 457899999999
Q ss_pred CCCeeEEEEEEcc
Q psy11132 173 AHSGEYTCVASNT 185 (243)
Q Consensus 173 ~d~g~y~C~~~n~ 185 (243)
+|+|.|.|.+...
T Consensus 87 ~Dsg~Y~C~~~~~ 99 (116)
T cd04982 87 EDSATYYCAYWES 99 (116)
T ss_pred HHCEEEEEEEecC
Confidence 9999999999753
No 302
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.48 E-value=8e-07 Score=55.95 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=44.8
Q ss_pred ccccCCeEEEEEEeeCCCCCceeEEEECCee-----e------cC-----------CCceEEEEe-eeeceEEEEeecCC
Q psy11132 20 TLNVGERASLICSITKGDIPLTIKWLKDGRY-----L------DN-----------SAALSITHV-DQYNSMLVIDSVSA 76 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~-----~------~~-----------~~~~~~~~~-~~~~~~l~i~~~~~ 76 (243)
.+.+|++++|.|.+........+.|||.... + .. ..++.+... ......|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 4788999999999853334458999984321 0 00 112222111 12246799999999
Q ss_pred CCCeeEEEEEE
Q psy11132 77 RHSGNYSCTVR 87 (243)
Q Consensus 77 ~d~G~Y~C~~~ 87 (243)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999875
No 303
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.47 E-value=1.3e-06 Score=56.09 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=48.9
Q ss_pred CCCcccccCCeEEEEEEeeCCC-----CCceeEEEECCee------e--cC---------CCceEEE-EeeeeceEEEEe
Q psy11132 16 NPERTLNVGERASLICSITKGD-----IPLTIKWLKDGRY------L--DN---------SAALSIT-HVDQYNSMLVID 72 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~v~W~~~~~~------~--~~---------~~~~~~~-~~~~~~~~l~i~ 72 (243)
|..+.+.+|+.|+|.|...... ....+.||+.... + .. ..++.+. .......+|+|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556788999999999874221 1346999985321 1 00 1233322 123345789999
Q ss_pred ecCCCCCeeEEEEEEeC
Q psy11132 73 SVSARHSGNYSCTVRNM 89 (243)
Q Consensus 73 ~~~~~d~G~Y~C~~~~~ 89 (243)
+++.+|+|.|.|.+...
T Consensus 86 ~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQPEDSGKYFFRVELG 102 (119)
T ss_pred cCChhhCeEEEEEEEcC
Confidence 99999999999998753
No 304
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.46 E-value=8.6e-07 Score=54.90 Aligned_cols=83 Identities=20% Similarity=0.341 Sum_probs=49.3
Q ss_pred CCCccCCCC-CcccccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCce-EEEEe-e---eeceEEEEeecCCCCCee
Q psy11132 9 PPKLSPTNP-ERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAAL-SITHV-D---QYNSMLVIDSVSARHSGN 81 (243)
Q Consensus 9 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~-~~~~~-~---~~~~~l~i~~~~~~d~G~ 81 (243)
||.+.+.+. .....+++.++|.|.+.+.+| ...++|+++|..+...... ..... + ...+.|.+..-...+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 344443322 223446788999999987666 5699999999987532111 11111 1 112345554444445679
Q ss_pred EEEEEEeCCC
Q psy11132 82 YSCTVRNMVA 91 (243)
Q Consensus 82 Y~C~~~~~~~ 91 (243)
|+|.+.+...
T Consensus 81 ~sC~V~H~~l 90 (100)
T cd07699 81 YTCEVTHEGL 90 (100)
T ss_pred EEEEEEecCC
Confidence 9999987654
No 305
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.45 E-value=7.9e-07 Score=55.05 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=45.8
Q ss_pred CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
...++.+.|.|.+.+.+| ...+.|+++|..+...... .....++. .+.|.+..-..++...|+|.+.....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGL 90 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCC
Confidence 445788999999976677 7799999999988643211 11111221 23455544444456799999998654
No 306
>PHA03376 BARF1; Provisional
Probab=98.44 E-value=1.2e-05 Score=54.25 Aligned_cols=114 Identities=17% Similarity=0.297 Sum_probs=66.6
Q ss_pred CCCCCCCcEEEEEEee--cCCCCCEEEEEeCCE----ec-C--------CCCC---eeEEeeccceeEEEEeecCCCCCe
Q psy11132 115 DGLPEGARTRVICGVT--HGDPPLTIRWLKDGK----PL-S--------PRFP---VNVSDLDSFSSLLSINSVSAAHSG 176 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~----~~-~--------~~~~---~~~~~~~~~~~~l~i~~~~~~d~g 176 (243)
.....|+.+.|+|.-. ...+...+.|+|.+. .+ . +... ....-.+..+..|.|.+++.+|.|
T Consensus 21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG 100 (221)
T PHA03376 21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 100 (221)
T ss_pred hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence 4556899999999763 122466899999432 10 0 0000 111111234677999999999999
Q ss_pred eEEEEEEccCcceeee-----EE---EEEEeecCCCCCeeeeeccceeeeccCccccc--ccceEEeC
Q psy11132 177 EYTCVASNTAAQARYS-----SK---LQVKGNLNRLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDN 234 (243)
Q Consensus 177 ~y~C~~~n~~g~~~~~-----~~---l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~ 234 (243)
.|+|.+.-......+. +. |.|+.+-...|- .+...+.|.+-+|| .++|+-+.
T Consensus 101 tY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~------~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 101 NYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPD------FSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred eEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCC------CCeeEEEEecCCcCCchheecccc
Confidence 9999998755332222 22 444422111221 34455677766665 78997663
No 307
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.43 E-value=4.4e-06 Score=51.11 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=46.6
Q ss_pred CCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEeee-eceEEEEeecCCCCCeeEEEE
Q psy11132 9 PPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVDQ-YNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 9 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
||.+.+.+.... |+.++|.|.+.+..|. ..++|.+++..+...... ....... .........+...+.+.|+|.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~ 78 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR 78 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence 555555443322 7789999999755565 499999999643322111 1111111 111222233445578899999
Q ss_pred EEeCCCc
Q psy11132 86 VRNMVAE 92 (243)
Q Consensus 86 ~~~~~~~ 92 (243)
+.+....
T Consensus 79 V~H~~~~ 85 (93)
T cd07698 79 VEHSGLK 85 (93)
T ss_pred EEeCCCC
Confidence 9876543
No 308
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.42 E-value=4.1e-05 Score=59.00 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=99.4
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCC---cceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVA---EDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRW 140 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W 140 (243)
...|+|.+++..++|.|+-++.+... .....+++.+..+|.+...+ ..+..|+...-.|.+.+.+|+ ..+.|
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEE
Confidence 46799999999999999877654332 23456677777778665544 447899999999999776774 47999
Q ss_pred EeCCEecCCCCCee--EEeecc-c--eeEEEEeecCCCC--CeeEEEEEEccCcce-e----eeEEEEEEeecCCCCCee
Q psy11132 141 LKDGKPLSPRFPVN--VSDLDS-F--SSLLSINSVSAAH--SGEYTCVASNTAAQA-R----YSSKLQVKGNLNRLPPSY 208 (243)
Q Consensus 141 ~~~~~~~~~~~~~~--~~~~~~-~--~~~l~i~~~~~~d--~g~y~C~~~n~~g~~-~----~~~~l~v~~~~~~~~p~~ 208 (243)
|+|+.++....... ....++ . .++|.+......| .-+.+|.+.-..+.. . .+..-.|. .+|.+
T Consensus 365 f~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY-----~~PtI 439 (566)
T PHA03269 365 TSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVY-----PFPNV 439 (566)
T ss_pred EeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccc-----cCCeE
Confidence 99998887432211 111222 1 2344442221122 336799988654332 2 22233344 67777
Q ss_pred eeecc-ceeeecc--CcccccccceEEeCCe
Q psy11132 209 TLVFS-QASYMST--SYYSFEQDSWMIDNEN 236 (243)
Q Consensus 209 ~~~~~-~~~~~~~--~~~~~~~~~W~~~~~~ 236 (243)
++.-+ ...+++. -..+.-.+.|+.+++.
T Consensus 440 Sm~FedG~AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 440 SIEIIDGHIVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred EEEEeCCEEEEecccccCCCceEEEEecCCC
Confidence 77654 4444432 2223337899887754
No 309
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.41 E-value=2.2e-06 Score=53.89 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCCCCCCcEEEEEEeecCCC-CCEEEEEeCCE--e---cC-------C--CCCeeEEeeccceeEEEEeecCCCCCeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDP-PLTIRWLKDGK--P---LS-------P--RFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~--~---~~-------~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~ 179 (243)
..+.+|++++|.|.+ .+.. ...+.||+... . +. . ..+... ........|.|.+++.+|+|.|.
T Consensus 10 ~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~-~~~~~~~~L~I~~~~~~Dsg~Y~ 87 (106)
T cd04980 10 LSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSG-SGSGTDFTLTISRVEPEDAAVYY 87 (106)
T ss_pred EEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEE-eccCCEEEEEECCCChHHCEEEE
Confidence 456789999999998 4544 57899997431 1 00 0 011111 11223467999999999999999
Q ss_pred EEEEcc
Q psy11132 180 CVASNT 185 (243)
Q Consensus 180 C~~~n~ 185 (243)
|.+.+.
T Consensus 88 Ca~~~~ 93 (106)
T cd04980 88 CQQYGT 93 (106)
T ss_pred EEEeCC
Confidence 999764
No 310
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.39 E-value=3.1e-06 Score=53.19 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=33.4
Q ss_pred ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
....|.|.+++.+|+|.|.|.+..........++|.|.+
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 357899999999999999999999776677888888764
No 311
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.37 E-value=2.5e-06 Score=51.79 Aligned_cols=69 Identities=25% Similarity=0.410 Sum_probs=44.7
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
|+.+.|.|.+.+++|.+.+.|+.++..+............ ...+.|.+..-...+...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7799999998889999999999999877211111111111 11245666544445566999999987553
No 312
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.37 E-value=1e-05 Score=51.03 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=34.5
Q ss_pred ceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
....|.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 357899999999999999999999888888888888874
No 313
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.36 E-value=5e-06 Score=53.16 Aligned_cols=74 Identities=15% Similarity=0.287 Sum_probs=46.4
Q ss_pred CCCCCCCcEEEEEEeecCCC---CCEEEEEeCCE------ecC---C-------CCCe----eEEe-eccceeEEEEeec
Q psy11132 115 DGLPEGARTRVICGVTHGDP---PLTIRWLKDGK------PLS---P-------RFPV----NVSD-LDSFSSLLSINSV 170 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~------~~~---~-------~~~~----~~~~-~~~~~~~l~i~~~ 170 (243)
..+..|++++|.|......+ ...+.|++... .+. . ...+ .... .......|.|.++
T Consensus 8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 87 (116)
T cd05715 8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL 87 (116)
T ss_pred EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence 34568999999998853322 25699986321 000 0 0000 0010 1122467999999
Q ss_pred CCCCCeeEEEEEEccCcc
Q psy11132 171 SAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 171 ~~~d~g~y~C~~~n~~g~ 188 (243)
+.+|+|.|.|.+.|....
T Consensus 88 ~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 88 QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred CcccCEEEEEEEEeCCCC
Confidence 999999999999987654
No 314
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.35 E-value=6e-06 Score=52.64 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=46.4
Q ss_pred CCCCCCCcEEEEEEeecCCC---CCEEEEEeC----CEe--c----CC-----C----CCeeEE-eeccceeEEEEeecC
Q psy11132 115 DGLPEGARTRVICGVTHGDP---PLTIRWLKD----GKP--L----SP-----R----FPVNVS-DLDSFSSLLSINSVS 171 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~----~~~--~----~~-----~----~~~~~~-~~~~~~~~l~i~~~~ 171 (243)
..+.+|+++.|.|......+ ...+.|++. +.. + .. . .+.... ........|.|.+++
T Consensus 8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 45678999999999753322 246999752 111 1 00 0 000111 111234679999999
Q ss_pred CCCCeeEEEEEEccCcc
Q psy11132 172 AAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 172 ~~d~g~y~C~~~n~~g~ 188 (243)
.+|+|.|.|.+.|..+.
T Consensus 88 ~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 88 PTDNGTYTCQVKNPPDV 104 (115)
T ss_pred hhhCEEEEEEEEeCCCC
Confidence 99999999999987653
No 315
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.33 E-value=1.2e-05 Score=48.85 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=43.4
Q ss_pred cccCCeEEEEEEeeCCCC-CceeEEEECCeeecCCCceEEEEeeeece-EEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 21 LNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVDQYNS-MLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
+..|+..+|.|.+.+.+| ...++|.+||..+............+... ......+...+...|+|.+.+...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 345777899999976555 45899999999876211111222221111 122224456677799999987543
No 316
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.32 E-value=4e-06 Score=51.89 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=47.4
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEec-------------CCCCCeeEE-eeccceeEEEEeecCCCCCeeEEEE
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-------------SPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCV 181 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~-------------~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~ 181 (243)
.+.+|++++|.|..........+.|++..... ....+.... ........|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 35689999999987433456789999854211 001112221 1123457899999999999999999
Q ss_pred EEccC
Q psy11132 182 ASNTA 186 (243)
Q Consensus 182 ~~n~~ 186 (243)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 98754
No 317
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.31 E-value=1.3e-05 Score=49.01 Aligned_cols=75 Identities=13% Similarity=0.213 Sum_probs=46.6
Q ss_pred CcEEEEEEeecCCCCCEEEEEeCCE----ec-----------CCC--CCeeEEeeccceeEEEEeecCCCCCeeEEEEEE
Q psy11132 121 ARTRVICGVTHGDPPLTIRWLKDGK----PL-----------SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183 (243)
Q Consensus 121 ~~~~l~C~~~~~~p~~~~~W~~~~~----~~-----------~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 183 (243)
+.++|.|..........++|.+... .+ ... .+............|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 3578899874333466788987432 11 011 111111111235789999999999999999997
Q ss_pred c-cCcceeeeEEE
Q psy11132 184 N-TAAQARYSSKL 195 (243)
Q Consensus 184 n-~~g~~~~~~~l 195 (243)
. +.|+..+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 56766666554
No 318
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.28 E-value=1.7e-05 Score=48.46 Aligned_cols=71 Identities=18% Similarity=0.416 Sum_probs=43.3
Q ss_pred ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCc-eEEEEeeee-ceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAA-LSITHVDQY-NSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~-~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
.+|+.++|.|.+.+..|. ..+.|+++|..+..... .......++ ........+...+...|+|.+.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 368899999999876665 48999999998765311 111111111 111112233445666999999876544
No 319
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.28 E-value=9e-06 Score=47.50 Aligned_cols=65 Identities=20% Similarity=0.443 Sum_probs=40.7
Q ss_pred eEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEee----eeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 26 RASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 26 ~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
.++|.|.+.+..|. ..+.|+++|..+...... ...... ...+.|.+......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899999866666 699999999875432211 111111 112455555545567789999998654
No 320
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.27 E-value=4.9e-06 Score=50.46 Aligned_cols=69 Identities=29% Similarity=0.515 Sum_probs=45.3
Q ss_pred CCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEee-cc---ceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DS---FSSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
|+.+.+.|.+..++|++.++|+.++..+........... .+ ..+.|.+..-..++...++|.|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 779999999889999999999999887722111111111 11 1355666544444566999999997654
No 321
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.26 E-value=1.6e-05 Score=48.54 Aligned_cols=68 Identities=18% Similarity=0.319 Sum_probs=40.5
Q ss_pred CCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCC--eeEEeeccceeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 120 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 120 g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
++.+.|.|.+.+.+|. ..++|++++..+..... ......++.........+...+.+.|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence 7889999999654664 49999999964332211 11111121112222233444578899999988654
No 322
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.26 E-value=0.00044 Score=52.50 Aligned_cols=167 Identities=14% Similarity=0.231 Sum_probs=96.8
Q ss_pred eeceEEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEEc-CCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEE
Q psy11132 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNV-PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTI 138 (243)
Q Consensus 64 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~ 138 (243)
.....|.|+++...++|.|+-..++.... ..+.+.+.+.. +|.+...+ ..+..|+...-.|.+.+-+|+ ..+
T Consensus 204 t~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a---~PVL~Ge~YkAtC~vAnYYPP~Svrl 280 (490)
T PHA03271 204 TNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA---PPVLSGENYKASCIVRHFYPPGSVYV 280 (490)
T ss_pred cceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEE
Confidence 34578999999999999776666654443 23334444443 44455444 347789999999999776774 479
Q ss_pred EEEeCCEecCCCCCeeE-----Eeeccce--eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeee
Q psy11132 139 RWLKDGKPLSPRFPVNV-----SDLDSFS--SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211 (243)
Q Consensus 139 ~W~~~~~~~~~~~~~~~-----~~~~~~~--~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~ 211 (243)
.||++|........... ...++.+ +++.+.+...+..-..+|.+.-..+....+..-.+... ...+|.+++.
T Consensus 281 rWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~-VY~~P~ISv~ 359 (490)
T PHA03271 281 SWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPT-VYHHPRISLA 359 (490)
T ss_pred EEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCc-cccCCeEEEE
Confidence 99999988765432211 1222222 33434333333344899999865543322221111111 1157777765
Q ss_pred cc-ceeeeccCccccc---ccceEEeCCe
Q psy11132 212 FS-QASYMSTSYYSFE---QDSWMIDNEN 236 (243)
Q Consensus 212 ~~-~~~~~~~~~~~~~---~~~W~~~~~~ 236 (243)
-. ..+++ +....| .++|+.+++.
T Consensus 360 FedG~AVC--tA~CVP~gV~lrWlVgD~p 386 (490)
T PHA03271 360 FKDGYAIC--TIECVPSGITVRWLVHDEP 386 (490)
T ss_pred EeCCEEEE--eccccCCCcEEEEEecCCC
Confidence 44 34444 333332 7899887754
No 323
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.25 E-value=9e-06 Score=46.48 Aligned_cols=63 Identities=35% Similarity=0.575 Sum_probs=44.8
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeecCCCce---EEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLDNSAAL---SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
+.|.|.+. +.+...+.|++++......... ...........|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEec-CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899996 4677799999988765443211 111112235789999999999999999998755
No 324
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.24 E-value=3.8e-05 Score=46.90 Aligned_cols=71 Identities=21% Similarity=0.425 Sum_probs=44.0
Q ss_pred CCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCC-ee-EEeeccceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 118 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFP-VN-VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~-~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
..|+..+|.|.+.+.+|. ..+.|+++|..+..... .. ....++.......-.+..++...|+|.+......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 468899999999766774 48999999998765411 11 1111211121222233445666999999986543
No 325
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.24 E-value=1.8e-05 Score=46.20 Aligned_cols=64 Identities=23% Similarity=0.535 Sum_probs=40.5
Q ss_pred EEEEEEeecCCCC-CEEEEEeCCEecCCCCCee-E-Eeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 123 TRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN-V-SDLDSF---SSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 123 ~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~-~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
++|.|.+.+.+|+ +.+.|+++|..+....... . ...++. .+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999766675 6999999998754332111 1 111211 2445555445566779999998754
No 326
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.24 E-value=6.8e-06 Score=51.38 Aligned_cols=66 Identities=21% Similarity=0.435 Sum_probs=44.0
Q ss_pred ccccCCeEEEEEEeeCCCCCceeEEEECCe----e---e---cC------------CCceEEEEeeeeceEEEEeecCCC
Q psy11132 20 TLNVGERASLICSITKGDIPLTIKWLKDGR----Y---L---DN------------SAALSITHVDQYNSMLVIDSVSAR 77 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~----~---~---~~------------~~~~~~~~~~~~~~~l~i~~~~~~ 77 (243)
.+.+|++|+|.|.+. ......+.|++... . + .. ..++.... ......|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~-~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~-~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVL-NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR-SSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEec-CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe-cCCEEEEEECCCCHH
Confidence 467899999999884 33445799998432 1 1 00 01111111 123568999999999
Q ss_pred CCeeEEEEEE
Q psy11132 78 HSGNYSCTVR 87 (243)
Q Consensus 78 d~G~Y~C~~~ 87 (243)
|+|.|.|.+.
T Consensus 80 DsgtY~Ca~~ 89 (104)
T cd05720 80 NEGYYFCSVA 89 (104)
T ss_pred HCEEEEEEEc
Confidence 9999999876
No 327
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.23 E-value=8.5e-06 Score=51.27 Aligned_cols=69 Identities=23% Similarity=0.340 Sum_probs=44.3
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCEec-----------CC-----------CCCeeEE-eeccceeEEEEeecCC
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-----------SP-----------RFPVNVS-DLDSFSSLLSINSVSA 172 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~-----------~~-----------~~~~~~~-~~~~~~~~l~i~~~~~ 172 (243)
.+.+|++++|.|.+........+.||+..... .. ..+.... ........|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 35789999999998422345689999743210 00 0011111 1122245799999999
Q ss_pred CCCeeEEEEEEc
Q psy11132 173 AHSGEYTCVASN 184 (243)
Q Consensus 173 ~d~g~y~C~~~n 184 (243)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999864
No 328
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.22 E-value=9.1e-06 Score=51.42 Aligned_cols=74 Identities=18% Similarity=0.327 Sum_probs=46.0
Q ss_pred cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce---EEEEe-e--eeceEEEEeecCCCC-CeeEEEEEEeCCCc
Q psy11132 21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL---SITHV-D--QYNSMLVIDSVSARH-SGNYSCTVRNMVAE 92 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~---~~~~~-~--~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 92 (243)
+.+++.++|.|.+.+..|. ..++|++|+..+...... ..... . ...+.|.+......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 4467789999999876666 599999999887643211 11111 0 113455555443334 45999999876554
Q ss_pred ce
Q psy11132 93 DT 94 (243)
Q Consensus 93 ~~ 94 (243)
..
T Consensus 95 ~~ 96 (115)
T cd05769 95 DT 96 (115)
T ss_pred cc
Confidence 33
No 329
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.21 E-value=1.5e-05 Score=45.53 Aligned_cols=63 Identities=46% Similarity=0.735 Sum_probs=45.4
Q ss_pred EEEEEEeecCCCCCEEEEEeCCEecCCCCCe---eEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPV---NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
+.|.|.+. +.+...+.|++++......... ...........|.+.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEec-CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 36889994 5788899999988776543321 111122235678999999999999999998865
No 330
>KOG1480|consensus
Probab=98.21 E-value=3.3e-07 Score=73.79 Aligned_cols=174 Identities=18% Similarity=0.264 Sum_probs=98.9
Q ss_pred CCccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeee------eceEEEEeecCCCCC---e
Q psy11132 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ------YNSMLVIDSVSARHS---G 80 (243)
Q Consensus 10 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~---G 80 (243)
|.+...+++..+..|.++.|.|.+. ..+ .+...-++.-+...........+. ..-+..|.....++. .
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a~-~a~--~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKAN-PAT--QIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE 101 (909)
T ss_pred ceeeecCCccceecCCCccceecCC-ccc--ccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence 5566778888899999999999973 322 333222222222111111111110 012233333333332 2
Q ss_pred eEEE--EEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEe
Q psy11132 81 NYSC--TVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 157 (243)
Q Consensus 81 ~Y~C--~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 157 (243)
.|.| .+....|.. ++...+.+.+.............+..+..+++.|....+.|...+.|++++..+.+.......
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~- 180 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA- 180 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh-
Confidence 5654 666555521 111111221111111111122457778889999988788899999999999888773322221
Q ss_pred eccceeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190 (243)
Q Consensus 158 ~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 190 (243)
....+.+..+...|.|+|+|+|.|..+...
T Consensus 181 ---~d~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 181 ---SDHNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred ---hcCCccccchhhhhcccceeeeehhhcccc
Confidence 134578889999999999999999887653
No 331
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.21 E-value=1.2e-05 Score=50.94 Aligned_cols=74 Identities=15% Similarity=0.340 Sum_probs=46.1
Q ss_pred CCCCCcEEEEEEeecCCCC-CEEEEEeCCEecCCCCCe--eEEeec--cc--eeEEEEeecCCCC-CeeEEEEEEccCcc
Q psy11132 117 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPV--NVSDLD--SF--SSLLSINSVSAAH-SGEYTCVASNTAAQ 188 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~--~~~~~~--~~--~~~l~i~~~~~~d-~g~y~C~~~n~~g~ 188 (243)
+..++.++|.|.+.+.+|. ..+.|++++..+...... ...... .+ .+.|.+......+ ...|+|.+......
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3456789999999766775 599999999887643221 111111 11 2445554433334 45899999987654
Q ss_pred ee
Q psy11132 189 AR 190 (243)
Q Consensus 189 ~~ 190 (243)
..
T Consensus 95 ~~ 96 (115)
T cd05769 95 DT 96 (115)
T ss_pred cc
Confidence 44
No 332
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.21 E-value=1.4e-05 Score=48.77 Aligned_cols=72 Identities=17% Similarity=0.356 Sum_probs=44.2
Q ss_pred CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEe-eccc--eeEEEEeecCCCCCeeEEEEEEccCccee
Q psy11132 119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSD-LDSF--SSLLSINSVSAAHSGEYTCVASNTAAQAR 190 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~-~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~ 190 (243)
.++.+.|.|.+.+.+| ...++|+++|..+...... .... .+.+ .+.|.+..-...+...|+|.+.+...+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~ 90 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFE 90 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeee
Confidence 4566899999976677 4799999999986432111 1111 1111 23344443333456799999998765543
No 333
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.21 E-value=1.3e-05 Score=51.24 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE--e---c-------C-C-CCCeeEEe-eccceeEEEEeecCCCCCeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK--P---L-------S-P-RFPVNVSD-LDSFSSLLSINSVSAAHSGEYT 179 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~--~---~-------~-~-~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~ 179 (243)
..+..|+++.|.|..........+.|++... . + . . ..+..... .......|.|.+++.+|+|.|.
T Consensus 9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~ 88 (116)
T cd07706 9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF 88 (116)
T ss_pred eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence 4568999999999985333567899997321 1 0 0 0 11222221 1233577999999999999999
Q ss_pred EEEEcc
Q psy11132 180 CVASNT 185 (243)
Q Consensus 180 C~~~n~ 185 (243)
|.+...
T Consensus 89 C~~~~~ 94 (116)
T cd07706 89 CALSTL 94 (116)
T ss_pred EEEECC
Confidence 999853
No 334
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.20 E-value=9.2e-06 Score=51.65 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=51.4
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCE-----ecC---CC-----------CCeeEEe-eccceeEEEEeecCCCC
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGK-----PLS---PR-----------FPVNVSD-LDSFSSLLSINSVSAAH 174 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-----~~~---~~-----------~~~~~~~-~~~~~~~l~i~~~~~~d 174 (243)
..+.+|+++.|.|..........+.|++... .+. .. .+..... .......|.|.+++.+|
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D 90 (114)
T PF07686_consen 11 VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD 90 (114)
T ss_dssp EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence 4467899999999995234566999998322 111 00 0011111 11235679999999999
Q ss_pred CeeEEEEEEccC-cceeeeEEEE
Q psy11132 175 SGEYTCVASNTA-AQARYSSKLQ 196 (243)
Q Consensus 175 ~g~y~C~~~n~~-g~~~~~~~l~ 196 (243)
+|.|.|.+.... ......+.|.
T Consensus 91 sG~Y~C~v~~~~~~~~~~~~~L~ 113 (114)
T PF07686_consen 91 SGTYFCQVSTSNEQSFGNGTKLT 113 (114)
T ss_dssp EEEEEEEEEESSEEEEEEEEEEE
T ss_pred CEEEEEEEEECCCCEECCcEEEE
Confidence 999999999872 2233344444
No 335
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.19 E-value=0.00034 Score=53.84 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=98.5
Q ss_pred eEEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCC--CEEEEEe
Q psy11132 67 SMLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLK 142 (243)
Q Consensus 67 ~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~ 142 (243)
..|+|..++...+|.|+-...+..+. ....+++....+|.+...+ ..+..|+...-.|.+.+-+|+ ..+.||+
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~ 274 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYK 274 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 45999999999999998776554443 3344555556777766544 447899999999999776774 4799999
Q ss_pred CCEecCC-CCCeeEE--eecc---ceeEEEEeecCC-CCCeeEEEEEEccCcce-ee----eEEEEEEeecCCCCCeeee
Q psy11132 143 DGKPLSP-RFPVNVS--DLDS---FSSLLSINSVSA-AHSGEYTCVASNTAAQA-RY----SSKLQVKGNLNRLPPSYTL 210 (243)
Q Consensus 143 ~~~~~~~-~~~~~~~--~~~~---~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~-~~----~~~l~v~~~~~~~~p~~~~ 210 (243)
++..+.. ....... ..++ ..++|.+..... +..-+.+|.+.-..+.. .. +..-.|. .+|.+.+
T Consensus 275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy-----~~P~Is~ 349 (486)
T PHA03273 275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVF-----VAPTVSV 349 (486)
T ss_pred CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccc-----cCCeEEE
Confidence 9998873 2211111 1111 234455554332 33448999988544332 22 2233344 6788777
Q ss_pred ecc-ceeeeccCcc--cccccceEEeC
Q psy11132 211 VFS-QASYMSTSYY--SFEQDSWMIDN 234 (243)
Q Consensus 211 ~~~-~~~~~~~~~~--~~~~~~W~~~~ 234 (243)
.-+ ..++++..=+ +--.+.|+.++
T Consensus 350 ~F~~G~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 350 TVEDGDAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred EEeCCEEEEecccccCCCeeEEEEccC
Confidence 654 4444433222 22378998776
No 336
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.17 E-value=4.1e-05 Score=46.69 Aligned_cols=66 Identities=26% Similarity=0.416 Sum_probs=41.0
Q ss_pred cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce-EEEEeeee----ceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL-SITHVDQY----NSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
.|+.++|.|.+.+.+|. ..++|.++|..+...... ......+. ...|.+ ...+...|+|.+.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCCC
Confidence 46668999999865664 689999999987543211 11111111 233433 34556699999987643
No 337
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.17 E-value=1.6e-05 Score=50.81 Aligned_cols=73 Identities=14% Similarity=0.323 Sum_probs=46.9
Q ss_pred CCCcccccCCeEEEEEEeeCCC-CCceeEEEECC--ee---e---cC-----------CCceEEEEee-eeceEEEEeec
Q psy11132 16 NPERTLNVGERASLICSITKGD-IPLTIKWLKDG--RY---L---DN-----------SAALSITHVD-QYNSMLVIDSV 74 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~-~~~~v~W~~~~--~~---~---~~-----------~~~~~~~~~~-~~~~~l~i~~~ 74 (243)
+....+.+|++++|.|...... ....+.|||.. +. + .. ..++...... .....|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4456788999999999874222 23479999832 11 1 00 1222222211 12347999999
Q ss_pred CCCCCeeEEEEEEe
Q psy11132 75 SARHSGNYSCTVRN 88 (243)
Q Consensus 75 ~~~d~G~Y~C~~~~ 88 (243)
+.+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998864
No 338
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.17 E-value=1e-05 Score=50.19 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=43.2
Q ss_pred CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEee---cc-c--eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDL---DS-F--SSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~---~~-~--~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
+..|+.++|.|.+.+.+| ...++|+++|..+....... .... ++ + .+.|.+..-...+...|+|.+.....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 345788999999975566 45889999999876432111 1111 11 1 23454533333455689999988654
No 339
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.16 E-value=5e-05 Score=46.29 Aligned_cols=65 Identities=25% Similarity=0.428 Sum_probs=41.4
Q ss_pred CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe--eEEeeccc---eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV--NVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~--~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
.|+..+|.|.+.+.+| ...++|.++|..+...... .....++. .+.|.+ ..++...|+|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCC
Confidence 4566799999976677 5799999999987653221 11111221 123433 3455669999998864
No 340
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.15 E-value=1.6e-05 Score=48.54 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=42.7
Q ss_pred cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEeee---eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVDQ---YNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
.++.++|.|.+.+..|. ..+.|.++|..+...... .....+. ..+.|.+..-...+...|+|.+.+....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45679999999865665 699999999886332110 0111111 1234545433344567999999876543
No 341
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.13 E-value=3.3e-05 Score=46.08 Aligned_cols=67 Identities=24% Similarity=0.423 Sum_probs=45.3
Q ss_pred CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCeeEEe--eccce---eEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD--LDSFS---SLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~--~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
.++.+.|.|.+.+.+| ...+.|+++|..+.......... .++.. +.|.+. ..+...|+|.+.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 4899999999976677 45899999999887654332222 22222 334444 56667999999986543
No 342
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.13 E-value=1.7e-05 Score=49.27 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=42.7
Q ss_pred cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE--EEEe----e--eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS--ITHV----D--QYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~--~~~~----~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
+..|+.++|.|.+.+..|. ..++|+++|..+....... .... . ...+.|.+..-...+...|+|.+.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 3457789999999865554 4889999998875432111 1110 0 0123444433333455689999987654
No 343
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.10 E-value=9.8e-05 Score=45.14 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=42.3
Q ss_pred CcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeE-Eeecc---ceeEEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 193 (243)
Q Consensus 121 ~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 193 (243)
....+.|.+.+|.|++.++|+++. ........ ...++ ..+.|.+.....++.-.|+|.+.+........+
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 456788999889999999999972 11111111 11111 135566654444445599999999875444333
No 344
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.09 E-value=0.00065 Score=51.89 Aligned_cols=171 Identities=16% Similarity=0.173 Sum_probs=87.7
Q ss_pred eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEEEeee-----eceEEEEeec
Q psy11132 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQ-----YNSMLVIDSV 74 (243)
Q Consensus 2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~ 74 (243)
++|..+.+|.+.+.+. -+.+|+...-+|.+.+.+|+ ..+.|++|+.++............. ..+++++...
T Consensus 214 VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~ 291 (466)
T PHA03270 214 TRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEAR 291 (466)
T ss_pred EEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEecccc
Confidence 4677788998887653 37789999999999776765 3899999999885422221111111 1233333322
Q ss_pred CCC-CCeeEEEEEEeCCCcc-e----eEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132 75 SAR-HSGNYSCTVRNMVAED-T----QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 148 (243)
Q Consensus 75 ~~~-d~G~Y~C~~~~~~~~~-~----~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 148 (243)
... ..-..+|.+.-..... . ....-.|..+|.+.. ....|.-+ |.+.--.....+.|+.++....
T Consensus 292 ~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv------~F~dG~AV---CtA~CVPegV~l~W~V~D~~~p 362 (466)
T PHA03270 292 AGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM------EFGGDEAV---CTAACVPEGVTLAWLLGADPAP 362 (466)
T ss_pred ccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE------EEeCCEEE---EeccccCCCCEEEEEecCCCCC
Confidence 111 1137799876333322 2 122223333333332 22233333 5553222366999998776554
Q ss_pred CCCCeeEEeec-cceeEEEEe---ecCCCCCeeEEEEEEc
Q psy11132 149 PRFPVNVSDLD-SFSSLLSIN---SVSAAHSGEYTCVASN 184 (243)
Q Consensus 149 ~~~~~~~~~~~-~~~~~l~i~---~~~~~d~g~y~C~~~n 184 (243)
..+.....+.- ..-....|. .++.+ ..+|+|.+..
T Consensus 363 a~~~~v~~G~C~~~PGlvNlrS~~plSd~-~~eYTCrl~G 401 (466)
T PHA03270 363 AEKAAVAGGPCPGRPGLARVRSALPLSRE-HSEYTCRLVG 401 (466)
T ss_pred CccceeecccCCCCCCceeeecccccccC-CceEEEEEee
Confidence 43322211110 001111111 22332 4699999864
No 345
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.09 E-value=0.00016 Score=44.00 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=43.3
Q ss_pred CCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCe-eEE-eeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~-~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
..|+...|.|.+.+.+| ...++|+++|..+. .... ... ..+..........+...+...|+|.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 45777799999976566 66899999999877 3221 111 112222222222445667779999998854
No 346
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.08 E-value=8.9e-05 Score=45.32 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=40.9
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 94 (243)
.....+.|.+.++.|.+.|.|+++. ............ ...+.|.+.....++...|+|.+.+......
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 4457899999889999999999971 111111110100 1134566654444444599999998765443
No 347
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.08 E-value=6.4e-05 Score=44.87 Aligned_cols=68 Identities=22% Similarity=0.401 Sum_probs=44.6
Q ss_pred ccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceEEEE--eeee---ceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 22 NVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITH--VDQY---NSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 22 ~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~--~~~~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
..++.++|.|.+.+.+|. ..|.|+++|..+.......... .+.. .+.|.+. ..+...|+|.+.+....
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 348999999999876664 5899999999886544322221 1111 2334443 55666999999876543
No 348
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.06 E-value=3.4e-05 Score=48.20 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=44.1
Q ss_pred CCCCCcEEEEEEeecCCCCCEEEEEeCCEe----c------CCCCC----------eeE-EeeccceeEEEEeecCCCCC
Q psy11132 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKP----L------SPRFP----------VNV-SDLDSFSSLLSINSVSAAHS 175 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~----~------~~~~~----------~~~-~~~~~~~~~l~i~~~~~~d~ 175 (243)
+.+|++++|.|.+. ......+.||+.... . ..... ... .........|.|.+++.+|+
T Consensus 3 v~~G~~vtL~C~~~-~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 3 AELGQKVELKCEVL-NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred ccCCCeEEEEEEec-CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 57899999999883 444567999974421 1 00000 001 01122456799999999999
Q ss_pred eeEEEEEEc
Q psy11132 176 GEYTCVASN 184 (243)
Q Consensus 176 g~y~C~~~n 184 (243)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999864
No 349
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.06 E-value=2.1e-05 Score=46.58 Aligned_cols=61 Identities=18% Similarity=0.419 Sum_probs=38.7
Q ss_pred eEEEEEEeeCCCCC-ceeEEEECCe--e---ec-------------CCCceEEEEee-eeceEEEEeecCCCCCeeEEEE
Q psy11132 26 RASLICSITKGDIP-LTIKWLKDGR--Y---LD-------------NSAALSITHVD-QYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 26 ~~~l~C~~~~~~~~-~~v~W~~~~~--~---~~-------------~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
+++|.|.+...... ..+.|++... . +. ...++.+.... ....+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 47899998643222 4799998431 1 10 11233333221 3457899999999999999996
Q ss_pred E
Q psy11132 86 V 86 (243)
Q Consensus 86 ~ 86 (243)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 350
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.04 E-value=4.6e-05 Score=46.71 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=41.2
Q ss_pred ccccCCeEEEEEEeeCC-CCC-ceeEEEECCeeecC-CCceEEEEeee---eceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 20 TLNVGERASLICSITKG-DIP-LTIKWLKDGRYLDN-SAALSITHVDQ---YNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 20 ~~~~g~~~~l~C~~~~~-~~~-~~v~W~~~~~~~~~-~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
.+..|+.++|.|.+.+. .|. ..++|.|+++.... .........+. ..+.|.+..-...+.-.|+|.+.+....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 35668999999999865 454 58999998753321 11100001110 1234444433333445899999876543
No 351
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.02 E-value=3e-05 Score=47.50 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=41.9
Q ss_pred CCCCCCcEEEEEEeecC-CC-CCEEEEEeCCEec-CCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 116 GLPEGARTRVICGVTHG-DP-PLTIRWLKDGKPL-SPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~~~~~-~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
.+..|+..+|.|.+.+. +| ...++|+|++... ...........++. .+.|.+..-..++...|+|.+.+....
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 35568999999999755 45 5689999987432 21111111111111 233444433333455899999987543
No 352
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.00 E-value=7e-05 Score=45.67 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=44.3
Q ss_pred CcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196 (243)
Q Consensus 121 ~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~ 196 (243)
....+.|.+.+|.|++.++|+++....... ......++. .+.|.+.....+|.-.|+|.+.+........+.+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 356789998889999999999872211110 111111111 35566654444445599999999875544444433
No 353
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.00 E-value=0.00011 Score=44.89 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEee----eeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD----QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
.....+.|.+.++.|...|+|+++.... ......... ...+.|.+.....+|...|+|++.+........+.+
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 3457899998889999999999872111 111101110 113456665444445559999999877554444443
Q ss_pred E
Q psy11132 100 I 100 (243)
Q Consensus 100 ~ 100 (243)
.
T Consensus 92 ~ 92 (95)
T cd07703 92 T 92 (95)
T ss_pred E
Confidence 3
No 354
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.00 E-value=7.1e-05 Score=45.74 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=39.5
Q ss_pred cccCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCceE-EEEeeee---ceEEEEeecCCCCCe-eEEEEEEeCC
Q psy11132 21 LNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALS-ITHVDQY---NSMLVIDSVSARHSG-NYSCTVRNMV 90 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~G-~Y~C~~~~~~ 90 (243)
+..+..++|.|.+.+..|. ..++|.++|..+..+.... ....++. .+.|. ++.++.| .|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~---vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLT---VTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEE---ECchhCCCeEEEEEEECC
Confidence 4446789999999865564 5899999998865432111 1111111 12333 3333234 5999998744
No 355
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.94 E-value=6.5e-05 Score=46.01 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=42.4
Q ss_pred CCCCCcEEEEEEeecCC-C-CCEEEEEeCCEecCCCCCeeEEeeccc---eeEEEEeecCCCCCeeEEEEEEccCc
Q psy11132 117 LPEGARTRVICGVTHGD-P-PLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~-p-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g 187 (243)
+..++.++|.|.+.+.+ | ...+.|.++|.. ...........++. .+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44678899999997656 5 568999999875 21111111111211 24455543333445579999998754
No 356
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.93 E-value=0.0024 Score=48.45 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCCCcEEEEEEeec-C-CCCCEEEEEeCCEecC-----------------CCCCeeEEee-----ccceeEEEEeecCC
Q psy11132 117 LPEGARTRVICGVTH-G-DPPLTIRWLKDGKPLS-----------------PRFPVNVSDL-----DSFSSLLSINSVSA 172 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~-~-~p~~~~~W~~~~~~~~-----------------~~~~~~~~~~-----~~~~~~l~i~~~~~ 172 (243)
+..|..+.|.|..+- | ..-....|+--|-++. ..+.+.+... +...++|+|+++..
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I 355 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI 355 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence 456899999997641 2 2244678875432221 1122222222 23468899999999
Q ss_pred CCCeeEEEEEEccCcceeeeEEEEEEeecCCCCCeeeeeccceeeeccCcccc----cccceEEeC
Q psy11132 173 AHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSF----EQDSWMIDN 234 (243)
Q Consensus 173 ~d~g~y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~W~~~~ 234 (243)
+..|-|.|.|....-+.+..--|.|.+. +--.+...........|-.... ..+.|.-+|
T Consensus 356 ~N~GCY~~~a~~g~~~~ec~~Cl~V~d~---V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnG 418 (500)
T PHA02914 356 NNAGCYEAQAFMGKFKEECRHCFKVADH---VFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNG 418 (500)
T ss_pred EcCCceEEEEecCcchhhhhhheEeccE---EEEEEEeccCceEEEEEEEEecccCCceeEEEEcc
Confidence 9999999999887555544444444311 1111222334555566654443 256777765
No 357
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.91 E-value=0.00015 Score=44.30 Aligned_cols=67 Identities=13% Similarity=0.317 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCCee--EEeeccc--eeEEEEeecCCC-CCeeEEEEEEccC
Q psy11132 117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN--VSDLDSF--SSLLSINSVSAA-HSGEYTCVASNTA 186 (243)
Q Consensus 117 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~--~~~~~~~--~~~l~i~~~~~~-d~g~y~C~~~n~~ 186 (243)
+..++..+|.|.+.+.+| ...++|.++|..+....... ....+.+ .+.|.+ ..+ ....|+|.+....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~v---t~~~~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTV---TKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEE---CchhCCCeEEEEEEECC
Confidence 334677899999976666 56899999999865432211 1111111 123333 333 3346999998843
No 358
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.89 E-value=2.7e-05 Score=49.73 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=46.4
Q ss_pred ccCCeEEEEEEeeCC----CCCceeEEEECCeeecC---CC---------ceEEEEeeeeceEEEEeecCCCCCeeEEEE
Q psy11132 22 NVGERASLICSITKG----DIPLTIKWLKDGRYLDN---SA---------ALSITHVDQYNSMLVIDSVSARHSGNYSCT 85 (243)
Q Consensus 22 ~~g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~---~~---------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 85 (243)
.=+++|.|+|.+..- .+...|+|..++..+-. .. +..+.....++++|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 348899999999531 13357999998876521 11 1111222234567888775444 8999999
Q ss_pred EEeCCCcceeEEEEEEE
Q psy11132 86 VRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 86 ~~~~~~~~~~~~~l~v~ 102 (243)
+.....+.+..+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99877777777776653
No 359
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.87 E-value=9.8e-05 Score=45.16 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=39.3
Q ss_pred cCCeEEEEEEeeCCCCC-ceeEEEECCeeecCCCce--EEEEeee---eceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 23 VGERASLICSITKGDIP-LTIKWLKDGRYLDNSAAL--SITHVDQ---YNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 23 ~g~~~~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
.++.++|.|.+.+..|. ..++|.++|.. ...... .....+. ..+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46679999999765554 58999999997 332110 1111011 12344444332223568999998754
No 360
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.85 E-value=0.00015 Score=44.13 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=46.7
Q ss_pred CCcccccCCeEEE-EEEeeCCCCCceeEEEECCeeecCCCceEEE--EeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 17 PERTLNVGERASL-ICSITKGDIPLTIKWLKDGRYLDNSAALSIT--HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 17 ~~~~~~~g~~~~l-~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
....+.+|+.+.+ .|.+.++.|...|+|+.+...... ...... ..-...+.+.+...+..|.-.++|.+.+....
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 3455778999999 999988999999999976332111 000000 00011345666545455556999999887553
No 361
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.85 E-value=0.0018 Score=50.37 Aligned_cols=170 Identities=15% Similarity=0.249 Sum_probs=87.6
Q ss_pred eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceE-EEEeee----eceEEEEeec
Q psy11132 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALS-ITHVDQ----YNSMLVIDSV 74 (243)
Q Consensus 2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~ 74 (243)
+.|.++.+|.+.+.+. -+.+|+...-.|.+.+.+|+ ..++|++|+..+....... ...... ..++|++...
T Consensus 322 VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~ 399 (566)
T PHA03269 322 ITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQ 399 (566)
T ss_pred EEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCc
Confidence 5677788897776643 37799999999999776665 3899999998876422111 111111 1234444222
Q ss_pred CCCC--CeeEEEEEEeCCCc-cee----EEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCE
Q psy11132 75 SARH--SGNYSCTVRNMVAE-DTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGK 145 (243)
Q Consensus 75 ~~~d--~G~Y~C~~~~~~~~-~~~----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~ 145 (243)
...| .-..+|.+.-.... ... ...-.|..+|.+.. ....|.-+ |.+. =.| ...+.|+.++.
T Consensus 400 ~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm------~FedG~AV---CtA~-CVP~~~V~l~WlVgD~ 469 (566)
T PHA03269 400 KNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI------EIIDGHIV---CLAK-CVPRGVVHFNWWINDI 469 (566)
T ss_pred cccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE------EEeCCEEE---Eecc-cccCCCceEEEEecCC
Confidence 1222 23569987533332 222 22223333333322 22334333 6552 222 35899997776
Q ss_pred ecCCCCCeeEEee-ccceeEEEEee---cCCCC-CeeEEEEEEc
Q psy11132 146 PLSPRFPVNVSDL-DSFSSLLSINS---VSAAH-SGEYTCVASN 184 (243)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~~~l~i~~---~~~~d-~g~y~C~~~n 184 (243)
........ ..+. ...-+...+.. +..+| .-+|+|.+..
T Consensus 470 p~~~~~t~-itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 470 PIEHENSE-ILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred CCCCccce-eeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence 64333221 1111 11112233333 33333 2389999874
No 362
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.84 E-value=8.3e-05 Score=41.45 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=36.3
Q ss_pred CCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 24 g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
.+.|.|+|.+ + .+|.|++ |..+.... ..+|.+.....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~-~----tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG-A----TNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC-C----CcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence 3479999975 1 3699999 65554322 35677888888999999998865
No 363
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.82 E-value=0.00019 Score=43.92 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCCcEEEEEEeecCCC-CCEEEEEeCCEecCCCCC---eeEEeeccc--eeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP---VNVSDLDSF--SSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~---~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
.++.+.|.|.+.+.+| ...++|+++|.. ..... ........+ .+.|.+..-.......|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4677999999976566 568999999997 33211 111111111 2334444332233568999999864
No 364
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.82 E-value=0.00012 Score=44.64 Aligned_cols=72 Identities=21% Similarity=0.256 Sum_probs=45.8
Q ss_pred CCCCCCCcEEE-EEEeecCCCCCEEEEEeCCEecCCCCCeeEEeec---cceeEEEEeecCCCCCeeEEEEEEccCcc
Q psy11132 115 DGLPEGARTRV-ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQ 188 (243)
Q Consensus 115 ~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~ 188 (243)
..+..|+.+.+ .|.+..|.|++.++|+.+....... ......+ ...+.+.+.....+|.-.++|.+.+..-.
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~--~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES--HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce--eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 34567888888 8999899999999999764332211 0011111 11355666554555555999999987543
No 365
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.81 E-value=0.0028 Score=48.32 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=71.1
Q ss_pred EecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEE-----EEee--eeceEEEEeecCC
Q psy11132 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSI-----THVD--QYNSMLVIDSVSA 76 (243)
Q Consensus 6 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~-----~~~~--~~~~~l~i~~~~~ 76 (243)
.+.||.+.+.+. -+.+|+...-+|.+.+.+|+ ..+.|++||..+........ ...+ ...++|++.+...
T Consensus 244 ~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~ 321 (490)
T PHA03271 244 CQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGI 321 (490)
T ss_pred EecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccC
Confidence 346777777643 36789999999999776665 38999999988754332111 1111 1123444433333
Q ss_pred CCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecC
Q psy11132 77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 148 (243)
Q Consensus 77 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 148 (243)
...-..+|.+.-.......+. .-...|.+...+.-......|.-+ |.+.--.....+.|.-++...+
T Consensus 322 ~~PPsLRCeV~W~rd~v~s~r--nAaatP~VY~~P~ISv~FedG~AV---CtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 322 DPPPKISCLVAWKQGDMISTT--NATAIPTVYHHPRISLAFKDGYAI---CTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred CCCCCceEEEEEccCCceeee--ecccCCccccCCeEEEEEeCCEEE---EeccccCCCcEEEEEecCCCCC
Confidence 333488998764333222221 222222222211111222334433 5553222366999997766543
No 366
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.80 E-value=7.1e-05 Score=41.44 Aligned_cols=51 Identities=27% Similarity=0.519 Sum_probs=35.0
Q ss_pred ccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 22 NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 22 ~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
..|..|+|+|... . . .+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~-~--~-~i~W~~n~~~~~g~-----------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLS-G--D-DIKWKKNDQVSQGS-----------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCC-C--C-CceEEeCCccCCCC-----------CceEEeeccC-CCCceEEEEeCC
Confidence 4689999999853 2 1 39999999655542 1223344444 889999999853
No 367
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.79 E-value=0.0002 Score=46.01 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCCCCCCcEEEEEEeecCC-----CCCEEEEEeCCEec--------CCC---------CCeeEE-eeccceeEEEEeecC
Q psy11132 115 DGLPEGARTRVICGVTHGD-----PPLTIRWLKDGKPL--------SPR---------FPVNVS-DLDSFSSLLSINSVS 171 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~~~~~--------~~~---------~~~~~~-~~~~~~~~l~i~~~~ 171 (243)
..+..|+.++|.|...... ....+.|++....- ... .+.... ........|.|.+++
T Consensus 9 v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~ 88 (119)
T cd05712 9 VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ 88 (119)
T ss_pred EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC
Confidence 4567899999999863221 13568999753210 000 011111 112335679999999
Q ss_pred CCCCeeEEEEEEcc
Q psy11132 172 AAHSGEYTCVASNT 185 (243)
Q Consensus 172 ~~d~g~y~C~~~n~ 185 (243)
.+|+|.|.|.+...
T Consensus 89 ~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 89 PEDSGKYFFRVELG 102 (119)
T ss_pred hhhCeEEEEEEEcC
Confidence 99999999998764
No 368
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.75 E-value=9.4e-05 Score=40.95 Aligned_cols=50 Identities=26% Similarity=0.410 Sum_probs=34.6
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 184 (243)
.|.+++|+|... + ..+.|++++..+.... ..+.+.+-. +++|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~-~---~~i~W~~n~~~~~g~~-----------~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLS-G---DDIKWKKNDQVSQGSD-----------EKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCC-C---CCceEEeCCccCCCCC-----------ceEEeeccC-CCCceEEEEeCC
Confidence 589999999752 2 2299999996655421 233344444 889999999964
No 369
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.75 E-value=0.00042 Score=42.05 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=46.4
Q ss_pred CCCCCCcEEEEEEeecCCCC--CEEEEEeCCEecCCCCCeeEE---eeccceeEEEEeecCCCCCe-eEEEEEEccCc
Q psy11132 116 GLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVS---DLDSFSSLLSINSVSAAHSG-EYTCVASNTAA 187 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g 187 (243)
.+.+|+.+++.|.+.+++|. ..+.|+++...+......... ........+.+.. ..+|.| .|+|.|.-..+
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~ 87 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID 87 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence 45789999999999777775 689999877665543211100 1111234556654 477777 99999976543
No 370
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.72 E-value=0.00029 Score=45.02 Aligned_cols=69 Identities=16% Similarity=0.378 Sum_probs=44.0
Q ss_pred CCCCCCCcEEEEEEeecCCC--CCEEEEEeCCE--ec------CC-----------CCCeeEEeec-cceeEEEEeecCC
Q psy11132 115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGK--PL------SP-----------RFPVNVSDLD-SFSSLLSINSVSA 172 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~--~~------~~-----------~~~~~~~~~~-~~~~~l~i~~~~~ 172 (243)
..+.+|++++|.|... +.. ...+.||+... .. .. ..+....... .....|.|.++..
T Consensus 7 ~~v~~G~~vtL~C~~~-~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 7 GLVKPGQSLKLSCKAS-GFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred eEEcCCCCEEEEEEEe-CCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 4567899999999873 322 45799997321 10 00 0111111111 2235699999999
Q ss_pred CCCeeEEEEEEc
Q psy11132 173 AHSGEYTCVASN 184 (243)
Q Consensus 173 ~d~g~y~C~~~n 184 (243)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999999875
No 371
>PHA02982 hypothetical protein; Provisional
Probab=97.70 E-value=0.0069 Score=41.85 Aligned_cols=122 Identities=15% Similarity=0.219 Sum_probs=74.0
Q ss_pred CCcccccCCeEEEEEEeeCCCCCceeEEEECCe-eec----------C-----CC-c-eEEEEeeeeceEEEEeecCCCC
Q psy11132 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGR-YLD----------N-----SA-A-LSITHVDQYNSMLVIDSVSARH 78 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~-~~~----------~-----~~-~-~~~~~~~~~~~~l~i~~~~~~d 78 (243)
.++....|++|.|+|....+.......|+.++. .+. . +. + .....-+...++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 345567799999999986555556888987542 221 0 00 1 1112223346899999999999
Q ss_pred CeeEEEEEEeCCCcc-eeEEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCE
Q psy11132 79 SGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 145 (243)
Q Consensus 79 ~G~Y~C~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~ 145 (243)
.|-|+|++....+.. .....|.|+......... .......+.|-+. ....+-..|..+|.
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~------e~nNeT~V~CyVg-S~~~dvp~W~V~GV 172 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYVVE------EHNNETIITCFVG-SKHGDVPRFIVAGI 172 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEEEEE------ecCCeEEEEEEEE-eccCCCccEEEeeE
Confidence 999999998766543 346667774322211111 1234556789773 33222128887665
No 372
>PHA02633 hypothetical protein; Provisional
Probab=97.70 E-value=0.00014 Score=39.48 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.7
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCC
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p 105 (243)
...|.|-++..+|+|.|.|..+|.......++.|.|....
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 5679999999999999999999887777777888876543
No 373
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.67 E-value=0.00023 Score=42.02 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=36.6
Q ss_pred cEEEEEEeecCCCC--CEEEEEeCCEe-----cC-------------CCCCeeEEeec-cceeEEEEeecCCCCCeeEEE
Q psy11132 122 RTRVICGVTHGDPP--LTIRWLKDGKP-----LS-------------PRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTC 180 (243)
Q Consensus 122 ~~~l~C~~~~~~p~--~~~~W~~~~~~-----~~-------------~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C 180 (243)
++.|.|.+. .... ..+.|++.... +. ...+....... .....|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~~-~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKAS-GFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEEe-ccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 468999885 3333 37899874420 00 01111222111 345779999999999999999
Q ss_pred EE
Q psy11132 181 VA 182 (243)
Q Consensus 181 ~~ 182 (243)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
No 374
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.63 E-value=0.00032 Score=43.01 Aligned_cols=70 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred cccCCeEEEEEEeeCCC-C-CceeEEEECCeeecCCCceEEEEee---eeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 21 LNVGERASLICSITKGD-I-PLTIKWLKDGRYLDNSAALSITHVD---QYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
+..+..++|.|.+.+.. | ...+.|.++|.. ...........+ ...+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44688999999998655 5 469999999875 111110011111 1134555543333444579999987654
No 375
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.53 E-value=0.0011 Score=40.19 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=43.4
Q ss_pred cccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEE---EeeeeceEEEEeecCCCCCe-eEEEEEEe
Q psy11132 21 LNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSIT---HVDQYNSMLVIDSVSARHSG-NYSCTVRN 88 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G-~Y~C~~~~ 88 (243)
+.+|..+++.|.+.+..|. ..+.|+++...+....-.... ........+++.. +++|.| .|.|.|.-
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 5789999999999877775 689999877665443211100 0011124455554 477777 99999964
No 376
>PHA02633 hypothetical protein; Provisional
Probab=97.48 E-value=0.00043 Score=37.65 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=32.3
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
...|.|-++..+|+|.|.|...|..-....++.+.|..
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 35577888999999999999999887788888888873
No 377
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.43 E-value=0.027 Score=43.91 Aligned_cols=131 Identities=15% Similarity=0.247 Sum_probs=72.6
Q ss_pred eeEEEecCCCccCCCCCcccccCCeEEEEEEeeCCCCC--ceeEEEECCeeecCCCceEEEEe----e--eeceEEEEee
Q psy11132 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHV----D--QYNSMLVIDS 73 (243)
Q Consensus 2 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~----~--~~~~~l~i~~ 73 (243)
+.+..+.+|.+.+.+. -+.+|+...-.|.+.+.+|+ ..+.|++||.++........... + ...++|++..
T Consensus 230 VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~ 307 (486)
T PHA03273 230 VTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPV 307 (486)
T ss_pred EEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccC
Confidence 3455578898877643 37799999999999776665 38999999998873222111111 1 1124454444
Q ss_pred cCC-CCCeeEEEEEEeCCCc-cee----EEEEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCC
Q psy11132 74 VSA-RHSGNYSCTVRNMVAE-DTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDG 144 (243)
Q Consensus 74 ~~~-~d~G~Y~C~~~~~~~~-~~~----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~ 144 (243)
... ...-..+|.+.-.... ... ...-.|..+|.+.. ....|.- .|.+. =.| ...+.|+.++
T Consensus 308 ~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~------~F~~G~A---VCtA~-CVP~egV~l~W~v~D 376 (486)
T PHA03273 308 DPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV------TVEDGDA---VCTAK-CVPSTGVFVSWSVND 376 (486)
T ss_pred cccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE------EEeCCEE---EEecc-cccCCCeeEEEEccC
Confidence 322 2334789987533332 221 22223333333322 2223433 36653 233 4789999766
No 378
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.34 E-value=0.0011 Score=37.05 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=35.9
Q ss_pred CCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEc
Q psy11132 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184 (243)
Q Consensus 119 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 184 (243)
..+++.|.|.+ .-.+.|++ |..+.... ...|.+-....+-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG-----ATNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC-----CCcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence 35678999965 24699999 55544331 24577777777889999999877
No 379
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.19 E-value=0.045 Score=41.87 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=95.1
Q ss_pred CcccccCCeEEEEEEeeC-CCC-CceeEEEECCeeecC-----------------CCceEEEE-----eeeeceEEEEee
Q psy11132 18 ERTLNVGERASLICSITK-GDI-PLTIKWLKDGRYLDN-----------------SAALSITH-----VDQYNSMLVIDS 73 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~-~~~-~~~v~W~~~~~~~~~-----------------~~~~~~~~-----~~~~~~~l~i~~ 73 (243)
+..+..|..+.|.|.++- |.. ...++|+--|-++.+ ...+.+.. .+-..++|+|.+
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 455777999999998863 333 347899865544321 11122111 112358999999
Q ss_pred cCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccccccCCCCCCCC-CcEEEEEEeecC-CCCCEEEEEeCCEecCCCC
Q psy11132 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEG-ARTRVICGVTHG-DPPLTIRWLKDGKPLSPRF 151 (243)
Q Consensus 74 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~ 151 (243)
+..+.+|-|+|.+............|.|.....+.-. .+| ......|-+.+. ..++.+.|..+|.......
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W~-------~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~ 425 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKWN-------TEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI 425 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEeccEEEEEEE-------eccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence 9999999999999876545556666666532211111 133 445567987444 3477899998876544322
Q ss_pred CeeEE-----eec-cceeEEEEeecCCCC-CeeEEEEEEccCcc
Q psy11132 152 PVNVS-----DLD-SFSSLLSINSVSAAH-SGEYTCVASNTAAQ 188 (243)
Q Consensus 152 ~~~~~-----~~~-~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~ 188 (243)
...+. -.+ -..+.+.|.+-...| --.-.|...-..|-
T Consensus 426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred cCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 11111 111 123456666554445 34567777665553
No 380
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.17 E-value=0.00039 Score=44.56 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCCcEEEEEEeec----CCCCCEEEEEeCCEecCCCCC------------eeEEeeccceeEEEEeecCCCCCeeEEEE
Q psy11132 118 PEGARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFP------------VNVSDLDSFSSLLSINSVSAAHSGEYTCV 181 (243)
Q Consensus 118 ~~g~~~~l~C~~~~----~~p~~~~~W~~~~~~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 181 (243)
.-++++.|.|.+.. ..+...+.|.+++..+-..+. ..+.....+...|.+..... -.|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a-~~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDA-VEGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHH-H-EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhc-cccceEEE
Confidence 45899999999842 113457999998876542111 01111222345577766333 28999999
Q ss_pred EEccCcceeeeEEEEEE
Q psy11132 182 ASNTAAQARYSSKLQVK 198 (243)
Q Consensus 182 ~~n~~g~~~~~~~l~v~ 198 (243)
+.......+..+.|..+
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99988777777777764
No 381
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.11 E-value=0.005 Score=38.67 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=44.5
Q ss_pred CCcccccCCeEEEEEEeeC-CCCC-ceeEEEECCe-ee--------------cCCCceEEEE-eeeeceEEEEeecCCCC
Q psy11132 17 PERTLNVGERASLICSITK-GDIP-LTIKWLKDGR-YL--------------DNSAALSITH-VDQYNSMLVIDSVSARH 78 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~-~~~~-~~v~W~~~~~-~~--------------~~~~~~~~~~-~~~~~~~l~i~~~~~~d 78 (243)
....+..|+.++|.|.+++ .... ..+.|+|... .+ ....++.... .....-.|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 3456778999999999853 2223 5788988421 11 0111221111 22234689999999999
Q ss_pred CeeEEEEE
Q psy11132 79 SGNYSCTV 86 (243)
Q Consensus 79 ~G~Y~C~~ 86 (243)
++.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999966
No 382
>PHA02982 hypothetical protein; Provisional
Probab=96.98 E-value=0.013 Score=40.55 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=54.0
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEeCCE-ecC----------C------C-CCeeEEeeccceeEEEEeecCCCCCee
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLS----------P------R-FPVNVSDLDSFSSLLSINSVSAAHSGE 177 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~----------~------~-~~~~~~~~~~~~~~l~i~~~~~~d~g~ 177 (243)
....++++.|.|...++..-....|+.+.. .+. . . ........++..++|+|+++..++.|-
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC 114 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC 114 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence 345799999999876555566889987432 111 0 0 001122234557899999999999999
Q ss_pred EEEEEEccCcceee-eEEEEE
Q psy11132 178 YTCVASNTAAQARY-SSKLQV 197 (243)
Q Consensus 178 y~C~~~n~~g~~~~-~~~l~v 197 (243)
|+|.+....+..+. .--+.|
T Consensus 115 Ytc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 115 FTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred eEEEEecCCCchheeheeeeE
Confidence 99999987654332 334444
No 383
>PHA03042 CD47-like protein; Provisional
Probab=96.90 E-value=0.01 Score=42.78 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=46.8
Q ss_pred CCeEEEEEEeeCC----CCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 24 GERASLICSITKG----DIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 24 g~~~~l~C~~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
++++.++|.+..- .....++|..+++.+-..... ..++|.+. -...-.|+|+|.+.+...+.+..+.|
T Consensus 31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeL 102 (286)
T PHA03042 31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIEL 102 (286)
T ss_pred CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEe-ccccCCCceeEEEeecccCccEEEEE
Confidence 7899999998531 134579999998876432211 13556554 34455899999999877666666555
Q ss_pred EEE
Q psy11132 100 IVN 102 (243)
Q Consensus 100 ~v~ 102 (243)
+-.
T Consensus 103 k~~ 105 (286)
T PHA03042 103 QYV 105 (286)
T ss_pred EEE
Confidence 543
No 384
>KOG1480|consensus
Probab=96.63 E-value=0.00099 Score=54.65 Aligned_cols=74 Identities=26% Similarity=0.463 Sum_probs=58.0
Q ss_pred CCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCc
Q psy11132 15 TNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 15 ~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
.+....|.++..+.+.|....+.|...++|++++..+.+....... ....+.+..+...|.|+|+|++.|..+.
T Consensus 135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~----~d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA----SDHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred ChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh----hcCCccccchhhhhcccceeeeehhhcc
Confidence 3444567788899999998778888899999999887773332222 2567899999999999999999987654
No 385
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.57 E-value=0.034 Score=35.01 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=42.2
Q ss_pred CCCCCCCcEEEEEEeecCCC--C-CEEEEEeCCEec-C--------------CCCCeeEE-eeccceeEEEEeecCCCCC
Q psy11132 115 DGLPEGARTRVICGVTHGDP--P-LTIRWLKDGKPL-S--------------PRFPVNVS-DLDSFSSLLSINSVSAAHS 175 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p--~-~~~~W~~~~~~~-~--------------~~~~~~~~-~~~~~~~~l~i~~~~~~d~ 175 (243)
..+..|+.++|+|+++ |.. . ..+.|+|..... + ...+.... .....+-.|.+.+++.+|.
T Consensus 8 ~lv~p~~sv~LsC~~s-g~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT 86 (115)
T cd05721 8 VLASSNGAASLVCEYT-YNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT 86 (115)
T ss_pred eEEcCCCCEEEEEEec-CCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence 3456788999999984 533 2 478898742211 0 01111111 1223346699999999999
Q ss_pred eeEEEEE
Q psy11132 176 GEYTCVA 182 (243)
Q Consensus 176 g~y~C~~ 182 (243)
+.|.|..
T Consensus 87 a~Y~Ca~ 93 (115)
T cd05721 87 DIYFCKI 93 (115)
T ss_pred eEEEEEe
Confidence 9999986
No 386
>PHA03042 CD47-like protein; Provisional
Probab=96.51 E-value=0.024 Score=40.96 Aligned_cols=72 Identities=24% Similarity=0.320 Sum_probs=48.9
Q ss_pred CCCCcEEEEEEeecCC-----CCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeee
Q psy11132 118 PEGARTRVICGVTHGD-----PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~ 192 (243)
.-++++.+.|.+. .. ....+.|..++..+-..+.. ..++|.+. -...-.|+|+|.|.+...+.+..
T Consensus 29 ~CN~TV~IpC~v~-n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~ 99 (286)
T PHA03042 29 TCNKTIVIVCNLN-LLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNT 99 (286)
T ss_pred ecCceEEEEeecC-ChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEe-ccccCCCceeEEEeecccCccEE
Confidence 3578999999984 32 35679999998876543322 12456554 35556899999999876655666
Q ss_pred EEEEEE
Q psy11132 193 SKLQVK 198 (243)
Q Consensus 193 ~~l~v~ 198 (243)
++++-+
T Consensus 100 IeLk~~ 105 (286)
T PHA03042 100 IELQYV 105 (286)
T ss_pred EEEEEE
Confidence 666544
No 387
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.38 E-value=0.0096 Score=36.52 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=38.2
Q ss_pred EEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEE
Q psy11132 138 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK 198 (243)
Q Consensus 138 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~ 198 (243)
++|..+..................+..|.|+.++..|+|.|...+++..|.. ...+.+.|.
T Consensus 46 ltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 46 LTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEcCCCcccccccccceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 5666555444332222222233345779999999999999999999999976 344666554
No 388
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.01 E-value=1.7 Score=42.46 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=106.2
Q ss_pred ccCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE--EEeC
Q psy11132 12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT--VRNM 89 (243)
Q Consensus 12 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~ 89 (243)
+.+......+..|+.++|.-... ......++|..++..-...... .+ .-+....|.|... +.|.
T Consensus 1700 L~L~aS~~~aavn~~V~fs~~lt-~GS~vty~W~~gdG~s~~~s~p----------~~---tHtf~~~G~y~VtVta~N~ 1765 (2740)
T TIGR00864 1700 LMLQASDNPAAVNALINLSAELA-EGSGLQYRWFLEEGDDLETSEP----------FM---SHSFPSAGLHLVTMKAFNE 1765 (2740)
T ss_pred eEEeccCCcccCCCeEEEEEEec-CCCCcEEEEEECCCCCcccCCC----------ce---EEEccCCceEEEEEEEEcc
Confidence 33333445567799999998765 4455689999766421110100 00 1124567888664 4577
Q ss_pred CCcceeEEEEEEEcCCCccccccCC----CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEE
Q psy11132 90 VAEDTQVQRLIVNVPPKIESFAFPF----DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 165 (243)
Q Consensus 90 ~~~~~~~~~l~v~~~p~~~~~~~~~----~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 165 (243)
.+....+..+.|+++..-....... ..+..|.++.+.-.+..|. ...+.|..++..-.... ...
T Consensus 1766 vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk----------~v~- 1833 (2740)
T TIGR00864 1766 LGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGK----------HAC- 1833 (2740)
T ss_pred ccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCC-eeEEEEEeCCCCccccc----------eeE-
Confidence 7776677778887765433222111 1345678888887765454 45888887654311110 111
Q ss_pred EEeecCCCCCeeEEE--EEEccCcceeeeEEEEEEeecC---CCCCeeeeeccceeeeccCccccc--ccceEEeC
Q psy11132 166 SINSVSAAHSGEYTC--VASNTAAQARYSSKLQVKGNLN---RLPPSYTLVFSQASYMSTSYYSFE--QDSWMIDN 234 (243)
Q Consensus 166 ~i~~~~~~d~g~y~C--~~~n~~g~~~~~~~l~v~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~--~~~W~~~~ 234 (243)
....+.|.|.. .|.|..+....+..+.|.+... ..+..-...+++.+.+.+....-. .+.|-+.+
T Consensus 1834 ----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1834 ----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred ----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence 24456787754 6778888877777777773221 011112334455555555332222 56665543
No 389
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.00 E-value=0.017 Score=41.65 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=37.5
Q ss_pred CCceeEEEEC-CeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 38 IPLTIKWLKD-GRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 38 ~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
..|.+.|... |+.+....+..+.. .+.|.+.+...+++|.|+|.+....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEe
Confidence 4568999974 55566665665554 5669999999999999999987544
No 390
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.88 E-value=0.024 Score=34.83 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=27.5
Q ss_pred eceEEEEeecCCCCCeeEEEEEEeCCCcc-eeEEEEEE
Q psy11132 65 YNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIV 101 (243)
Q Consensus 65 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 101 (243)
.+.+|.|+.++.+|+|.|.-.+.+..|.. ...+.+.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 36789999999999999999999988874 34444443
No 391
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.81 E-value=0.024 Score=40.91 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=36.7
Q ss_pred CCCEEEEEeC-CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 134 PPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 134 p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
..|.+.|... |..+.......+.. ++.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEe
Confidence 4689999975 45555444444332 5679999999999999999998765
No 392
>KOG4597|consensus
Probab=95.32 E-value=0.039 Score=43.20 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=58.6
Q ss_pred CCCCCCcEEEEEEeecCCCCCEEEEEe---CCEecCCCCCeeE-EeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132 116 GLPEGARTRVICGVTHGDPPLTIRWLK---DGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 116 ~~~~g~~~~l~C~~~~~~p~~~~~W~~---~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 191 (243)
.+..+++..++|.+ .|.+.+.++|.+ ++..+........ ...-.....|.|-+....|+|.|+|.+.+..|-..+
T Consensus 207 ~vg~wetcS~tCg~-~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~r 285 (560)
T KOG4597|consen 207 FVGDWETCSSTCGV-QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRR 285 (560)
T ss_pred hcccchhhcccccc-cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeec
Confidence 46678999999999 699999999974 3333221111111 011112356889999999999999999999999988
Q ss_pred eEEEEEE
Q psy11132 192 SSKLQVK 198 (243)
Q Consensus 192 ~~~l~v~ 198 (243)
.+.+.+.
T Consensus 286 dv~c~s~ 292 (560)
T KOG4597|consen 286 DVPCSSV 292 (560)
T ss_pred cceeeee
Confidence 8887764
No 393
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.19 E-value=0.21 Score=30.07 Aligned_cols=68 Identities=13% Similarity=0.347 Sum_probs=41.9
Q ss_pred CCCcccccCCeEEEEEEeeCCC----CCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEE
Q psy11132 16 NPERTLNVGERASLICSITKGD----IPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTV 86 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~ 86 (243)
++...+..|++++..|.+..+- ....+.|..++..++... +...+ +..+.+++.+......-.|-|..
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~q-y~~in--~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQ-YRVIN--DTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGC-EEEES--TTEEEEEESS--SSEEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhH-cceeC--CeEEEEEEccCCCCCceEEEEEE
Confidence 4455688899999999986542 335899999988665543 33222 22366777776666556666664
No 394
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=94.90 E-value=0.085 Score=31.75 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=41.1
Q ss_pred EEEEEEeecCCCCCEEEEEeC--CEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132 123 TRVICGVTHGDPPLTIRWLKD--GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196 (243)
Q Consensus 123 ~~l~C~~~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~ 196 (243)
+.-.|.+.+|.|+..++|.-+ |.. .........+.-...+.+.+-.....|.-..+|.+.........++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 345698779999999999842 321 0000000000001134555656666777799999998754444444443
No 395
>KOG4597|consensus
Probab=94.86 E-value=0.067 Score=41.95 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=59.8
Q ss_pred CCCcccccCCeEEEEEEeeCCCCCceeEEEE---CCeeecCCC-ceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC
Q psy11132 16 NPERTLNVGERASLICSITKGDIPLTIKWLK---DGRYLDNSA-ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA 91 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~---~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 91 (243)
+....+..|++..++|-+. |.+.+.|.|.+ ++..+.-.. .............|.|-+....|+|-|+|.+.+..+
T Consensus 203 pa~w~vg~wetcS~tCg~~-G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g 281 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQ-GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG 281 (560)
T ss_pred cchhhcccchhhccccccc-CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence 4455678899999999984 88989999976 332221111 110011112357899999999999999999999988
Q ss_pred cceeEEEEEEE
Q psy11132 92 EDTQVQRLIVN 102 (243)
Q Consensus 92 ~~~~~~~l~v~ 102 (243)
...+.+.+.+.
T Consensus 282 ~~~rdv~c~s~ 292 (560)
T KOG4597|consen 282 FLRRDVPCSSV 292 (560)
T ss_pred eeeccceeeee
Confidence 77766666654
No 396
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.53 E-value=0.19 Score=38.09 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=24.6
Q ss_pred ecCCCccCCCCCcccccCCeEEEEEEeeCCCCC-ceeEEEEC
Q psy11132 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKD 47 (243)
Q Consensus 7 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~ 47 (243)
..||.+.+.... ..+ .++|+|.+.+..|. ..++|.|+
T Consensus 201 ~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 201 PVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 356666654321 122 57999999865664 58999999
No 397
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.39 E-value=0.23 Score=37.70 Aligned_cols=22 Identities=18% Similarity=0.596 Sum_probs=18.7
Q ss_pred cEEEEEEeecCCC-CCEEEEEeC
Q psy11132 122 RTRVICGVTHGDP-PLTIRWLKD 143 (243)
Q Consensus 122 ~~~l~C~~~~~~p-~~~~~W~~~ 143 (243)
.+.|.|.+.+.+| ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999987777 668999999
No 398
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.24 E-value=0.44 Score=28.03 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEE-EccCcceeeeEEEEE
Q psy11132 135 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA-SNTAAQARYSSKLQV 197 (243)
Q Consensus 135 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~n~~g~~~~~~~l~v 197 (243)
.+.+.|+..+...... ............|+|.+.|.| .+..........+.+
T Consensus 26 ~~~~~l~~~~~k~~~~-----------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLET-----------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEE-----------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCcccccc-----------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4566676555443221 234455667789999999999 454444444444443
No 399
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.02 E-value=0.66 Score=27.30 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=29.7
Q ss_pred ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEE-eCCCcceeEEEEEE
Q psy11132 40 LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVR-NMVAEDTQVQRLIV 101 (243)
Q Consensus 40 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v 101 (243)
+.+.|+-.+...... ...+.....+.+|+|.+.|.|. +..........+.+
T Consensus 27 ~~~~l~~~~~k~~~~-----------~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKSLET-----------KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEEEEE-----------SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCcccccc-----------ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 466666555433221 3345566778899999999995 33333333444433
No 400
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.99 E-value=7 Score=38.69 Aligned_cols=158 Identities=11% Similarity=0.096 Sum_probs=89.5
Q ss_pred cccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEE--EEeCCCcceeEEE
Q psy11132 21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT--VRNMVAEDTQVQR 98 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~~~~ 98 (243)
+..|+..+|...+..+.+. .+.|+.+-..+.....+..... . .+ .+....|.|... |.|..+..+....
T Consensus 1965 ~~~g~~~tF~A~v~~g~~V-~f~W~f~~~~~~g~~~~~~~G~---~--vt---y~~~~~G~~~I~v~A~N~l~s~n~t~~ 2035 (2740)
T TIGR00864 1965 IATGEEKNFTANVQRGKPV-AFAWTFDLHHLHGDSLVIHMGK---D--VS---YTAEAAGLLEIQLGAFNALGAENITLQ 2035 (2740)
T ss_pred eecCceEEEEEEEecCCce-EEEEEeeecccCCCcceeecCC---c--eE---EccCCCcEEEEEEEEEcccCcccccEE
Confidence 6779999999998655554 7999866443333222111110 1 11 123468888765 4566676666667
Q ss_pred EEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCC-EecCCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132 99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177 (243)
Q Consensus 99 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 177 (243)
+.|+.+...............+..+++.|....+.....+.|-.++ ............ . .....|.
T Consensus 2036 i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~s------H-------tY~r~G~ 2102 (2740)
T TIGR00864 2036 LEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAE------H-------EYLHPGD 2102 (2740)
T ss_pred EEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeE------E-------EecCCcc
Confidence 7777654333222112345568899999998533335789997754 433322111111 1 1123477
Q ss_pred EEEE--EEccCcceeeeEEEEEEee
Q psy11132 178 YTCV--ASNTAAQARYSSKLQVKGN 200 (243)
Q Consensus 178 y~C~--~~n~~g~~~~~~~l~v~~~ 200 (243)
|.-. |.|.........++.|...
T Consensus 2103 Y~V~V~a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864 2103 YRVQVNASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred EEEEEEEEcceeeeeeEEEEEEEEe
Confidence 7554 5577666666677776643
No 401
>KOG0613|consensus
Probab=93.53 E-value=0.5 Score=42.03 Aligned_cols=131 Identities=8% Similarity=-0.042 Sum_probs=76.1
Q ss_pred eEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcC----------------CCccccccC--CCCCCCCCcEEEEEE
Q psy11132 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP----------------PKIESFAFP--FDGLPEGARTRVICG 128 (243)
Q Consensus 67 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~----------------p~~~~~~~~--~~~~~~g~~~~l~C~ 128 (243)
....+.+-...+.+.|+|...+..+.....+.-.+... +........ ......+..+.+.|.
T Consensus 278 ~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~ 357 (1205)
T KOG0613|consen 278 NTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTA 357 (1205)
T ss_pred ccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccc
Confidence 34555556666677777777666555433333222211 101110000 022345667788888
Q ss_pred eecCCCCCE-EEEEeCCEecCCCCCeeE-EeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 129 VTHGDPPLT-IRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 129 ~~~~~p~~~-~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
. .+.+.+. +.|++++........... .........+.+..+...+.+.|.|.|.|..|.........+.
T Consensus 358 ~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs 428 (1205)
T KOG0613|consen 358 L-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS 428 (1205)
T ss_pred c-cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence 7 4666554 999998776554332111 1122234567888899999999999999999977655444444
No 402
>PHA03283 envelope glycoprotein E; Provisional
Probab=92.19 E-value=5.4 Score=32.38 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=48.5
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCccc---------cccCC-----------CCCCCCCcEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES---------FAFPF-----------DGLPEGARTRV 125 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~~~---------~~~~~-----------~~~~~g~~~~l 125 (243)
...|.|.+++.+++|.|+-..++..+.....+.|.|..++.... .+... .....|+++.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 57899999999999999999997666445556677765222110 00000 11347998888
Q ss_pred EEEeecCC--C--CCEEEEEe
Q psy11132 126 ICGVTHGD--P--PLTIRWLK 142 (243)
Q Consensus 126 ~C~~~~~~--p--~~~~~W~~ 142 (243)
.-...... + ..++.|+.
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEEEeeccCCCCceEEEEEEE
Confidence 66553222 2 34789986
No 403
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=91.86 E-value=3.4 Score=29.34 Aligned_cols=134 Identities=19% Similarity=0.353 Sum_probs=61.9
Q ss_pred ceeEEEECCeeecCCCceEEEE---ee--eeceEEEEe-ecCCCCCeeEEEEEEeCCCc-ceeEE----EEEEEcCCCcc
Q psy11132 40 LTIKWLKDGRYLDNSAALSITH---VD--QYNSMLVID-SVSARHSGNYSCTVRNMVAE-DTQVQ----RLIVNVPPKIE 108 (243)
Q Consensus 40 ~~v~W~~~~~~~~~~~~~~~~~---~~--~~~~~l~i~-~~~~~d~G~Y~C~~~~~~~~-~~~~~----~l~v~~~p~~~ 108 (243)
..+.|+.||.++....-..... .+ ...+.|++. +......-..+|.+.-.... .+..+ .-.|..+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 4789999999876432111111 11 113455552 22333345889987643332 22222 22233333332
Q ss_pred ccccCCCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCCCCCeeEEeec-cceeEEEEee---cCCCCCe--eEEE
Q psy11132 109 SFAFPFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINS---VSAAHSG--EYTC 180 (243)
Q Consensus 109 ~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~---~~~~d~g--~y~C 180 (243)
. ....|. ..|.+. =-| ...+.|.-++............+.- ..-....|.. ++.. .| +|+|
T Consensus 87 v------~F~~g~---AVC~A~-CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~-~~~~~YtC 155 (211)
T PF02124_consen 87 V------RFEDGY---AVCTAR-CVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDE-DGPVEYTC 155 (211)
T ss_pred E------EecCCE---EEEEcc-eeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCcc-CCceeEEE
Confidence 2 122333 346653 222 3799999877654222222211111 1112233333 3333 34 9999
Q ss_pred EEEc
Q psy11132 181 VASN 184 (243)
Q Consensus 181 ~~~n 184 (243)
.+..
T Consensus 156 ~l~G 159 (211)
T PF02124_consen 156 RLIG 159 (211)
T ss_pred EEee
Confidence 9874
No 404
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=91.45 E-value=0.87 Score=27.57 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=38.3
Q ss_pred EEEEEEeeCCCCCceeEEEEC--Cee-ecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEE
Q psy11132 27 ASLICSITKGDIPLTIKWLKD--GRY-LDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRL 99 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~--~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 99 (243)
+.-.|.+.+|.|+..|+|.-+ |.. ....... ...-...+.+.+-.....|.-..+|++..........+.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~--~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQ--NGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCC--CCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 456798778999999999842 321 0000000 0000112334444555666668999998754433334444
No 405
>PHA03052 Hypothetical protein; Provisional
Probab=90.47 E-value=1.1 Score=25.15 Aligned_cols=36 Identities=14% Similarity=0.461 Sum_probs=28.1
Q ss_pred CCcccccCCeEEEEEEeeCCCC--CceeEEEECCeeec
Q psy11132 17 PERTLNVGERASLICSITKGDI--PLTIKWLKDGRYLD 52 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~~ 52 (243)
....+..|+.++|.|.+.-+.+ ...+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 4566888999999999975444 45788998888773
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.27 E-value=1.1 Score=26.97 Aligned_cols=65 Identities=11% Similarity=0.210 Sum_probs=39.2
Q ss_pred CCCCCCCcEEEEEEeecC----CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEE
Q psy11132 115 DGLPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~ 182 (243)
..+..|..++..|....+ .....+.|..++..++........ ...+..++.+......-.|-|..
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in---~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN---DTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES---TTEEEEEESS--SSEEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC---CeEEEEEEccCCCCCceEEEEEE
Confidence 446789999999988643 246689999998876655332222 22366667665555555666664
No 407
>KOG0613|consensus
Probab=89.57 E-value=0.91 Score=40.54 Aligned_cols=166 Identities=13% Similarity=0.010 Sum_probs=94.2
Q ss_pred CCcccccCCeEEEEEEeeCCCCCc-eeEEEECCeeecCCCceEEE-EeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132 17 PERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94 (243)
Q Consensus 17 ~~~~~~~g~~~~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 94 (243)
..+....+..+++.|... +.+.+ .+.|++++........-... ........+.|..+...+.+.|.|.+.|..+...
T Consensus 342 ~~v~a~d~~~v~m~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 342 LSVTARDNTLVEMPTALS-GTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred ceeccccCcceeeccccc-CCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCccc
Confidence 345667788899999985 65555 59999987665443311111 1122356788899999999999999999888644
Q ss_pred eEEEEEEEcCCCccccc-----cC-CCCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCCCCCeeEEeeccceeEEE
Q psy11132 95 QVQRLIVNVPPKIESFA-----FP-FDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 166 (243)
Q Consensus 95 ~~~~l~v~~~p~~~~~~-----~~-~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
......+.......... .. ......-+.+.+.|.. .+.+ -..++|++++......... .. ......|.
T Consensus 421 ~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~-~s~~~~~~~~tt~~~~~~~s~~s~~--l~-r~~~tslL 496 (1205)
T KOG0613|consen 421 TIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPD-SSTSMPMTTVTTIKDGLPLSDRSVT--LT-RDVLTSLL 496 (1205)
T ss_pred ccchhhcccccCCCCCccccccccccccccCCcccccccCC-CCccccceeEeeccCCccccccccc--cc-ccchhhhe
Confidence 33333333322111110 00 0112233777888887 4666 3455666665544322111 11 11124455
Q ss_pred EeecCCCCCeeEEEEEEccCc
Q psy11132 167 INSVSAAHSGEYTCVASNTAA 187 (243)
Q Consensus 167 i~~~~~~d~g~y~C~~~n~~g 187 (243)
+.-....+.+.|.-......+
T Consensus 497 lk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 497 LKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred eeccCCCccchhhhhhhccCC
Confidence 666677777887555444433
No 408
>PHA03112 IL-18 binding protein; Provisional
Probab=89.00 E-value=2.4 Score=27.83 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=22.3
Q ss_pred cccccCCeEEEEEEeeCCCCC-ceeEEEECC
Q psy11132 19 RTLNVGERASLICSITKGDIP-LTIKWLKDG 48 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~~~-~~v~W~~~~ 48 (243)
+...+|+.+.|+|.+....|. .-+.|..++
T Consensus 33 vp~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 33 IPTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 345779999999998644454 478899765
No 409
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=88.93 E-value=3.6 Score=24.90 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=47.5
Q ss_pred cCCCCCcccccCCeEEEEEEeeCCCCCceeEEEECC--eeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 13 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
.+.|+...+..|+++.+.|..+ -..+-.+-|.-.- ..+..+.. =..+.+.+++. | ..-.|.+.=..
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCSts-C~~p~~~GLET~L~k~~~~~g~~---------W~~f~LsnV~~-d-s~~~C~~~C~g 74 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTS-CPQPEKIGLETSLSKTELDSGPQ---------WKAFQLSNVTE-D-SSPLCFFNCSG 74 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEES-SSS-SEEEEESSSEEEEEEEETT---------EEEEEEEEE-S-C-EEEEEEEEETT
T ss_pred EEECCccEECCCCCEEEEEcCC-CCCCCcceEEEecCCcccCCCCc---------EEEEEEEcccc-C-CeEEEEEEcCC
Confidence 3446677899999999999974 2222244443211 11111111 24566778876 4 56789887654
Q ss_pred CcceeEEEEEEEcCCC
Q psy11132 91 AEDTQVQRLIVNVPPK 106 (243)
Q Consensus 91 ~~~~~~~~l~v~~~p~ 106 (243)
.....++.+.|..+|.
T Consensus 75 ~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 75 EQSSASANITVYKPPE 90 (91)
T ss_dssp EEEEEEEEEEEEB--S
T ss_pred eEEEeEEeeEEeCCCC
Confidence 4456778888887764
No 410
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=88.34 E-value=7.3 Score=27.74 Aligned_cols=95 Identities=18% Similarity=0.323 Sum_probs=51.3
Q ss_pred CCEEEEEeCCEecCCCCCeeEEe--ecc---ceeEEEEeec-CCCCCeeEEEEEEccCcce-eeeE----EEEEEeecCC
Q psy11132 135 PLTIRWLKDGKPLSPRFPVNVSD--LDS---FSSLLSINSV-SAAHSGEYTCVASNTAAQA-RYSS----KLQVKGNLNR 203 (243)
Q Consensus 135 ~~~~~W~~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~-~~~~----~l~v~~~~~~ 203 (243)
...+.||.||..+.......... .++ ..++|.+... ..+..-+.+|.+.-..... ...+ .-.|.
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy----- 80 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVY----- 80 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeeccccccee-----
Confidence 34789999999887543322222 112 1244555322 2233458999988654422 2222 22333
Q ss_pred CCCeeeeecc-ceeeeccCccccc----ccceEEeCCe
Q psy11132 204 LPPSYTLVFS-QASYMSTSYYSFE----QDSWMIDNEN 236 (243)
Q Consensus 204 ~~p~~~~~~~-~~~~~~~~~~~~~----~~~W~~~~~~ 236 (243)
.+|.+++.-. ..+ .|+....+ .++|+-+++.
T Consensus 81 ~~P~vsv~F~~g~A--VC~A~CVP~~~v~l~W~v~d~~ 116 (211)
T PF02124_consen 81 PKPRVSVRFEDGYA--VCTARCVPRGNVTLRWSVGDDP 116 (211)
T ss_pred cCCEEEEEecCCEE--EEEcceeeCCCeEEEEEECCcc
Confidence 6777776543 333 34444433 7899987753
No 411
>PHA03240 envelope glycoprotein M; Provisional
Probab=88.15 E-value=1.3 Score=31.05 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=40.6
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEEC--------Ce---ee---cC--CCc---------eEEEEeeeeceEEEEe
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKD--------GR---YL---DN--SAA---------LSITHVDQYNSMLVID 72 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~--------~~---~~---~~--~~~---------~~~~~~~~~~~~l~i~ 72 (243)
++.+.+|++|+|.-.- ...+...+.|++. |. ++ .+ .++ .....-...+++|.|.
T Consensus 32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 4568899999997653 2245568999981 11 11 00 011 0011112246789999
Q ss_pred ecCCCCCeeEEEEE
Q psy11132 73 SVSARHSGNYSCTV 86 (243)
Q Consensus 73 ~~~~~d~G~Y~C~~ 86 (243)
++..+|.|+|.-..
T Consensus 111 ~vn~sd~~nYcr~k 124 (258)
T PHA03240 111 HLNLSDAGEYCRKK 124 (258)
T ss_pred EEeecCcchhhhcc
Confidence 99999999985443
No 412
>KOG1026|consensus
Probab=87.71 E-value=1.7 Score=37.17 Aligned_cols=163 Identities=20% Similarity=0.240 Sum_probs=88.8
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ 97 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 97 (243)
...+..|..+++.|... +.+.+...|+.++....+.......- ........ ++.|.+.+..+.....+
T Consensus 201 ~~~v~~~~~~~~~c~~~-~~~vp~~~~~~~~~~~~~~~~~~~~c-----~~~~~~~~------~~~c~~E~~~~~~~~~v 268 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQA-GIPVPCHYWFPNCLASSNTNQTSSLC-----RSECEVLE------NDLCIAENAVARSNPSI 268 (774)
T ss_pred hhhhcccchheeeeecc-cCCCcceeeecccccccCCCcccccc-----cccceeee------chhhHHHHhhhhcCcee
Confidence 45577899999999984 88888999998776554422211000 00111111 18898888877766666
Q ss_pred EEEEEcCCCccccccCCCCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCee
Q psy11132 98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177 (243)
Q Consensus 98 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~ 177 (243)
.+.+..++........ ... ....+.-.+ .+.|.+...|..++..+............. ...+........+.|.
T Consensus 269 ~~~~~~p~~~~~~~~~---~~~-~~~C~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~-~~C~~~~~~~h~~~~~ 342 (774)
T KOG1026|consen 269 LLVVDLPKAEVLLCSP---LSD-HHNCIPIGI-TANPGPALHWCYNGSGLNYRGTVCVTKSGK-EQCLPWNDPPHSHNGN 342 (774)
T ss_pred eeEEecccccccCCCC---ccc-cCceeeeec-cCCCCCceeeeecCccceEecccccccccC-cCCcccCcCcccccCc
Confidence 6665544322211111 011 111111122 256777888888776654322211111110 0233344446677899
Q ss_pred EEEEEEccCcceeeeEEEEEE
Q psy11132 178 YTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 178 y~C~~~n~~g~~~~~~~l~v~ 198 (243)
|+|.+.+..|.........+.
T Consensus 343 ~~~~~e~~~g~~~~r~~g~~~ 363 (774)
T KOG1026|consen 343 YTLFPELPGGKNYCRNPGGFM 363 (774)
T ss_pred ceeeecccCccccccCcCccc
Confidence 999999998866555444443
No 413
>PHA03286 envelope glycoprotein E; Provisional
Probab=84.29 E-value=6.4 Score=31.32 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=31.2
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceeee-EEEEEEee
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQVKGN 200 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~-~~l~v~~~ 200 (243)
.+.|.|.+++.+++|.|+-...|..|....+ +.+.|.++
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~ 165 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGH 165 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecC
Confidence 3669999999999999999999987776544 56667644
No 414
>KOG1026|consensus
Probab=83.11 E-value=0.94 Score=38.58 Aligned_cols=168 Identities=20% Similarity=0.183 Sum_probs=92.0
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEE
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ 97 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 97 (243)
+.+...++...+.|.+. ..+...+.|.++........+............+...+....+.|.+.|...+.........
T Consensus 61 n~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 139 (774)
T KOG1026|consen 61 NITEIFIENGQLLCIVS-GNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTE 139 (774)
T ss_pred hHHHHHHhhhhhccccc-CCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccch
Confidence 34455577778888885 44444888988766554332222111111233466667777777777776654332211110
Q ss_pred EEEEEcC--------------------CCc--------c-----------------ccccCCCCCCCCCcEEEEEEeecC
Q psy11132 98 RLIVNVP--------------------PKI--------E-----------------SFAFPFDGLPEGARTRVICGVTHG 132 (243)
Q Consensus 98 ~l~v~~~--------------------p~~--------~-----------------~~~~~~~~~~~g~~~~l~C~~~~~ 132 (243)
...+..+ +.. . ........+..|..+++.|.. .+
T Consensus 140 l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~-~~ 218 (774)
T KOG1026|consen 140 LSLVGNPFTCSCSIRWLDRYREDGFCVPYRGLACLNFLSNGTVANESIQLCGEIENRIRAANLTVEEGSSITLKCSQ-AG 218 (774)
T ss_pred hhhccCCCCcchhhhHHhhhcccCCCCCchhhHHHhhcCCceehhhhhhhhcchhhhhhhhhhhhcccchheeeeec-cc
Confidence 0000000 000 0 000001235678899999999 59
Q ss_pred CCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 133 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
.|.+...|+..+.............. .-...+. .+.|.+.|..|....++.+.+.
T Consensus 219 ~~vp~~~~~~~~~~~~~~~~~~~~c~---~~~~~~~--------~~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 219 IPVPCHYWFPNCLASSNTNQTSSLCR---SECEVLE--------NDLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred CCCcceeeecccccccCCCccccccc---ccceeee--------chhhHHHHhhhhcCceeeeEEe
Confidence 99999999987776654322111111 0111111 1789999999988877777766
No 415
>PHA03189 UL14 tegument protein; Provisional
Probab=82.46 E-value=19 Score=27.22 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=40.7
Q ss_pred CCCcccccCCeEEEEEEeeCC-CCCce--eEEEE-------------CCeeecC-------CCceEEEEeee-eceEEEE
Q psy11132 16 NPERTLNVGERASLICSITKG-DIPLT--IKWLK-------------DGRYLDN-------SAALSITHVDQ-YNSMLVI 71 (243)
Q Consensus 16 ~~~~~~~~g~~~~l~C~~~~~-~~~~~--v~W~~-------------~~~~~~~-------~~~~~~~~~~~-~~~~l~i 71 (243)
+....+..|+.+++.|.+... .|... +.+.. .|..+.. ....++..... ..-+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 345667899999999998532 23222 22221 1222211 11222222211 1223444
Q ss_pred eecCCCCCeeEEEEEEeCCCc
Q psy11132 72 DSVSARHSGNYSCTVRNMVAE 92 (243)
Q Consensus 72 ~~~~~~d~G~Y~C~~~~~~~~ 92 (243)
++..+.+|.|.|+..|....
T Consensus 139 -~v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHG 158 (348)
T ss_pred -EEEecccceEEEEeccccce
Confidence 46677899999999987654
No 416
>PHA03286 envelope glycoprotein E; Provisional
Probab=82.14 E-value=25 Score=28.29 Aligned_cols=77 Identities=17% Similarity=0.009 Sum_probs=47.1
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEcC----CC-cc--ccccC-----------CCCCCCCCcEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVP----PK-IE--SFAFP-----------FDGLPEGARTRVI 126 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~----p~-~~--~~~~~-----------~~~~~~g~~~~l~ 126 (243)
...|.|.+.+.+.+|.|+-..++..+. ....+.|.|... +. .. ..+.. .....+|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 467999999999999999999987655 344556666421 11 11 11110 0113479998776
Q ss_pred EEeecC----CCCCEEEEEe
Q psy11132 127 CGVTHG----DPPLTIRWLK 142 (243)
Q Consensus 127 C~~~~~----~p~~~~~W~~ 142 (243)
-..... .-...+.|+.
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 554311 1245789975
No 417
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=80.75 E-value=9.7 Score=22.77 Aligned_cols=54 Identities=20% Similarity=0.340 Sum_probs=32.2
Q ss_pred eEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcc
Q psy11132 26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED 93 (243)
Q Consensus 26 ~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 93 (243)
...|.+.+.++.+ .+.|+.||..+..... ...+.+ .....|.|+..+.+..|..
T Consensus 31 ~~~l~l~a~~~~~--~~~W~vdg~~~g~~~~---------~~~~~~---~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 31 RQPLVLKAAGGRG--PVYWFVDGEPLGTTQP---------GHQLFW---QPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cceEEEEEeCCCC--cEEEEECCEEcccCCC---------CCeEEe---CCCCCeeEEEEEEcCCCCE
Confidence 3444444433423 8999999998843322 222222 2356789988887776654
No 418
>PHA03052 Hypothetical protein; Provisional
Probab=80.52 E-value=4.4 Score=22.76 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=26.7
Q ss_pred CCCCCCCcEEEEEEeecCCC--CCEEEEEeCCEecCC
Q psy11132 115 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSP 149 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~ 149 (243)
..+..|..++|.|.+.-|.+ .+.+.|..|+..+..
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 34567999999999975544 557899998887743
No 419
>PHA03240 envelope glycoprotein M; Provisional
Probab=75.48 E-value=7 Score=27.65 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=21.7
Q ss_pred ceeEEEEeecCCCCCeeEEEEEEccCcce
Q psy11132 161 FSSLLSINSVSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 161 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~ 189 (243)
.+++|.|..+..+|.|+|.-.-....|..
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 35789999999999999965554445544
No 420
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=72.85 E-value=9.7 Score=21.26 Aligned_cols=44 Identities=23% Similarity=0.493 Sum_probs=26.0
Q ss_pred EEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEe
Q psy11132 28 SLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88 (243)
Q Consensus 28 ~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 88 (243)
+|+|... ...-++||-||..+-.-. ..++++.. -.++|+|+-+.
T Consensus 2 tltC~s~---~sLPiswYcN~TRLlRlt----------~~Tlt~~~----ltcNFtCV~qS 45 (71)
T PF11049_consen 2 TLTCPSN---ASLPISWYCNGTRLLRLT----------QQTLTVVT----LTCNFTCVGQS 45 (71)
T ss_pred ceecCCC---CCCcccEEECCceeeeec----------CCeEeeee----eeEEeeecCCC
Confidence 5788752 333589999997664311 22344332 25788897653
No 421
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=68.26 E-value=17 Score=24.74 Aligned_cols=36 Identities=31% Similarity=0.252 Sum_probs=27.0
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
.-.|.|.+.+.+|+|.|.-+++-........+.+.+
T Consensus 123 ~~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 123 GVLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred ceEEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 456999999999999999999866555544444443
No 422
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=64.93 E-value=22 Score=19.81 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=14.1
Q ss_pred cccCCeEEEEEEeeCCCCCceeEEEE
Q psy11132 21 LNVGERASLICSITKGDIPLTIKWLK 46 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~~~v~W~~ 46 (243)
+..|+.++|. |.+...+.|++
T Consensus 2 v~~G~N~TL~-----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV-----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe-----CCCCCceEEEE
Confidence 4567777772 55556799994
No 423
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=63.43 E-value=29 Score=20.66 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=34.6
Q ss_pred cEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceee
Q psy11132 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191 (243)
Q Consensus 122 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~ 191 (243)
...|.+.+..+ ...+.||.||..+..... ...+.+ .....|.|+..+....|....
T Consensus 31 ~~~l~l~a~~~--~~~~~W~vdg~~~g~~~~---------~~~~~~---~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG--RGPVYWFVDGEPLGTTQP---------GHQLFW---QPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC--CCcEEEEECCEEcccCCC---------CCeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence 44555555333 339999999999843221 122322 335679999999887776543
No 424
>PHA03112 IL-18 binding protein; Provisional
Probab=63.30 E-value=41 Score=22.31 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCCCcEEEEEEeecCCCC-CEEEEEeCC
Q psy11132 118 PEGARTRVICGVTHGDPP-LTIRWLKDG 144 (243)
Q Consensus 118 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~ 144 (243)
..++++.|.|.+-+..|. .-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 468999999998533354 568999665
No 425
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=60.04 E-value=55 Score=22.65 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=36.8
Q ss_pred EEeeCCCCCceeEEEECCeeecCCCceEE-EE-----eeeeceEEEEeecCCCCCeeEEEEEEeCC
Q psy11132 31 CSITKGDIPLTIKWLKDGRYLDNSAALSI-TH-----VDQYNSMLVIDSVSARHSGNYSCTVRNMV 90 (243)
Q Consensus 31 C~~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 90 (243)
|..++-..+|.++|.-....+.++.-... .. -....+.+.+...+-.+.-.|.|.+...+
T Consensus 114 CitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 114 CITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 55544455679999987766655332111 00 01123556777777888889999987554
No 426
>PHA03281 envelope glycoprotein E; Provisional
Probab=59.17 E-value=48 Score=27.48 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=30.6
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceee-eEEEEEEeec
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQVKGNL 201 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~l~v~~~~ 201 (243)
.+.|.|.+++.+++|.|+-......|.... .+.++|++..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 357999999999999999998866664443 5667777543
No 427
>PHA03290 envelope glycoprotein I; Provisional
Probab=55.25 E-value=41 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=28.4
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
.-.|.|.+.+.+|+|.|.-+++-.......-+.+.+.
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 5679999999999999999998665555555555554
No 428
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=54.63 E-value=39 Score=23.05 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=25.6
Q ss_pred eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEE
Q psy11132 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ 196 (243)
Q Consensus 163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~ 196 (243)
-.|.|.+.+.+|+|.|.-.+.-...+....+.+.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~ 157 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKADVFRLS 157 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCCcEEEEe
Confidence 4589999999999999999987655444444443
No 429
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=53.71 E-value=1.5e+02 Score=25.75 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=84.9
Q ss_pred cccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC------cce
Q psy11132 21 LNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA------EDT 94 (243)
Q Consensus 21 ~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~ 94 (243)
...|+.+.|.+.+.+|. ...+++.-.|.......... ...+. -++..+|.|.-.+.-... ...
T Consensus 302 ql~g~~I~ika~a~GG~-~llYrf~I~G~~~e~~~Y~~-------~n~~~---w~P~~~G~Y~I~v~VKDk~S~~eyD~~ 370 (667)
T PRK14081 302 QLTDTDIELKAVAEGGK-ELLYRFIIKGKESEDSGYIR-------NNIYT---WKPKIAGKYSITLWVKDISSKGEYEDK 370 (667)
T ss_pred eecCceEEEEEEecCCC-ceEEEEEECCcEEeeccccc-------cceEE---EeeCCCceEEEEEEEEcCcCcccccce
Confidence 46799999999997554 44555555554443211100 22232 345578999988764332 134
Q ss_pred eEEEEEEEcCCCccc----cc-cCCCCCCCCCcEEEEEEeecCCCCCEEEE--EeCCEecCCCCCeeEEeeccceeEEEE
Q psy11132 95 QVQRLIVNVPPKIES----FA-FPFDGLPEGARTRVICGVTHGDPPLTIRW--LKDGKPLSPRFPVNVSDLDSFSSLLSI 167 (243)
Q Consensus 95 ~~~~l~v~~~p~~~~----~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W--~~~~~~~~~~~~~~~~~~~~~~~~l~i 167 (243)
..+.+.+...+..+. .. .....+..|+.+.+.+.+.+|. ...+.. .++|..+....- ..+..+.+
T Consensus 371 ~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~-~~lY~f~ik~ng~~ve~~~Y-------~~~~~~~f 442 (667)
T PRK14081 371 SSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGT-NLRYSFIIKKDGKEEEKIDY-------GKNNWVNF 442 (667)
T ss_pred EEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCC-eEEEEEEEEECCEEEEEeec-------ccccEEEE
Confidence 445566655322221 11 1124567899999999996554 444433 357776553211 11233433
Q ss_pred eecCCCCCeeEEEEEEcc--Ccce----eeeEEEEEE
Q psy11132 168 NSVSAAHSGEYTCVASNT--AAQA----RYSSKLQVK 198 (243)
Q Consensus 168 ~~~~~~d~g~y~C~~~n~--~g~~----~~~~~l~v~ 198 (243)
.+.-+|.|+..+.-. .... ...+.+.|.
T Consensus 443 ---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 443 ---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred ---EECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 346789998766543 3322 344566665
No 430
>PHA03283 envelope glycoprotein E; Provisional
Probab=53.22 E-value=46 Score=27.46 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=31.0
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEEe
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~~ 199 (243)
.+.|.|.+++.+++|.|+-...+..+.....+.+.|++
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 36799999999999999999999777445556777775
No 431
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=52.31 E-value=40 Score=18.76 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=21.4
Q ss_pred cccccCCeEEEEEEeeCCCCCceeEEEECC
Q psy11132 19 RTLNVGERASLICSITKGDIPLTIKWLKDG 48 (243)
Q Consensus 19 ~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~ 48 (243)
..+..|+.+.|.... .......+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 457789999999987 34445589999988
No 432
>PHA03282 envelope glycoprotein E; Provisional
Probab=48.99 E-value=45 Score=27.08 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=26.4
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCc--ceeEEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVN 102 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~ 102 (243)
+.+|.|.+++.+|+|.|+..+...... ....+.|.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 667999999999999999987543332 3334555554
No 433
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=48.50 E-value=49 Score=18.61 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=33.7
Q ss_pred ceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 40 LTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 40 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
....|++++....... +.+. ...-.+..-........|.++..+....|..-....+.|
T Consensus 7 v~H~W~~~g~~~~~i~-l~i~--g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARIP-LPIS--GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEEE-Eecc--CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 4678999987654211 1111 000122333344457889999999988887555444443
No 434
>PHA03282 envelope glycoprotein E; Provisional
Probab=48.39 E-value=53 Score=26.70 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=25.7
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcc--eeeeEEEEEE
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQ--ARYSSKLQVK 198 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~~~~~l~v~ 198 (243)
+.+|.|.+++.+|+|.|+..+...... +...+.+.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 456999999999999999997543322 2344555554
No 435
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=45.55 E-value=21 Score=18.86 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=14.8
Q ss_pred cCCCCCeeEEEEEEccCcce
Q psy11132 170 VSAAHSGEYTCVASNTAAQA 189 (243)
Q Consensus 170 ~~~~d~g~y~C~~~n~~g~~ 189 (243)
+-.+.+..|.|.+.|..|..
T Consensus 5 ilkdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 5 ILKDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred eeecCCCceEEEEecccHhH
Confidence 34456678999999988753
No 436
>PHA03289 envelope glycoprotein I; Provisional
Probab=45.36 E-value=63 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.3
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
+-.|.|.+.+.+|+|.|.-+++-.......-+.+.+
T Consensus 121 gvLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 121 GLLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 457999999999999999999866555444454444
No 437
>PHA03189 UL14 tegument protein; Provisional
Probab=42.52 E-value=1.6e+02 Score=22.69 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=16.0
Q ss_pred EEEeecCCCCCeeEEEEEEccC
Q psy11132 165 LSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 165 l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
|++ ++..+.+|.|.|+..|..
T Consensus 136 LtF-~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 136 LTF-RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEE-EEEecccceEEEEecccc
Confidence 444 456678999999999864
No 438
>PHA03292 envelope glycoprotein I; Provisional
Probab=42.20 E-value=68 Score=25.30 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=27.5
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 101 (243)
.-.|.|.+.+.+|+|.|..+++-........|.+.+
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsv 162 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSA 162 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEE
Confidence 468999999999999999999866554444444444
No 439
>PHA03291 envelope glycoprotein I; Provisional
Probab=40.60 E-value=94 Score=24.28 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=29.8
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 102 (243)
.-.|.|.+...+|+|.|..+++-.......-|.|.+.
T Consensus 128 ~vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 128 QPLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred ceEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 4578999999999999999999766666566666665
No 440
>COG5475 Uncharacterized small protein [Function unknown]
Probab=40.08 E-value=63 Score=17.44 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=18.8
Q ss_pred EEEEeecCCCCCeeEEEEEEccCcceeeeE
Q psy11132 164 LLSINSVSAAHSGEYTCVASNTAAQARYSS 193 (243)
Q Consensus 164 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~ 193 (243)
.+++...+ .+|.|.|...+..|.....+
T Consensus 19 ~Mtvs~~s--s~Gmy~C~Wf~g~g~~~~~F 46 (60)
T COG5475 19 RMTVSGYS--SDGMYECRWFDGYGVKREAF 46 (60)
T ss_pred eEEEeccc--cCCeEEEEEecCCCcccccc
Confidence 35555433 34999999999988655443
No 441
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=39.68 E-value=16 Score=29.43 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCc---ceeEEEEEEEc--CCCccccccCC--CCCCCCCcEEEEEEeecC---CCC
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAE---DTQVQRLIVNV--PPKIESFAFPF--DGLPEGARTRVICGVTHG---DPP 135 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~--~p~~~~~~~~~--~~~~~g~~~~l~C~~~~~---~p~ 135 (243)
...+.|..........|...+.-..+. ......+.+.. +|.+....... ..+..++.+.|...+..- ...
T Consensus 147 ~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~ 226 (440)
T PF02010_consen 147 SSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSN 226 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCC
Confidence 455666544443333376665533322 23333344432 23222222111 236677777776555311 235
Q ss_pred CEEEEEe
Q psy11132 136 LTIRWLK 142 (243)
Q Consensus 136 ~~~~W~~ 142 (243)
..+.|..
T Consensus 227 ~~y~Wsl 233 (440)
T PF02010_consen 227 VSYSWSL 233 (440)
T ss_dssp -------
T ss_pred EEEEEEE
Confidence 6788887
No 442
>KOG0200|consensus
Probab=36.44 E-value=2.8e+02 Score=23.90 Aligned_cols=111 Identities=21% Similarity=0.129 Sum_probs=58.8
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEEEEcCCCc----cccccCCCCCCCCCcEEEEEEeecCCCCCEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI----ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL 141 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~p~~----~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~ 141 (243)
...+.+..+...+.|.|+|.+.+ ....+.+. ..+.. ............+....+ + ...+.+.+.|.
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 81 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN----INLIISLD--DIVIHRPILLAGENANPNTVVTVGVPL---A-FSIPQPFIKWG 81 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec----CceeeEee--cccCcccccccCCCCCcceeeccccee---e-eecCCCcceee
Confidence 45678888899999999999998 22222222 11111 111111122334455555 2 12235667776
Q ss_pred eCCEec-----CCCCCee---------EEeeccceeEEEEeecCCCCCeeEEEEEEccC
Q psy11132 142 KDGKPL-----SPRFPVN---------VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186 (243)
Q Consensus 142 ~~~~~~-----~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 186 (243)
...... ....... ....+.....+.+.++...+.+.|.|...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 140 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTV 140 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcc
Confidence 543211 0000000 00002234667888999999999999987633
No 443
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=35.48 E-value=1.1e+02 Score=18.71 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCCCCCCcEEEEEEeecCCCCCEEEEEeCCEecCCCCCeeEEeeccceeEEEEeecCCCCCeeEEEEEEccCcceeeeEE
Q psy11132 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194 (243)
Q Consensus 115 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~ 194 (243)
..+..|+++.++|...-.. +..+.|.-.-. .........=..+.+.+++. ...-.|.+.=.......++.
T Consensus 13 ~vV~~G~Sv~VNCStsC~~-p~~~GLET~L~-------k~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~~~~ 82 (91)
T PF03921_consen 13 PVVPPGGSVWVNCSTSCPQ-PEKIGLETSLS-------KTELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSASAN 82 (91)
T ss_dssp EEEETTEEEEEEEEESSSS--SEEEEESSSE-------EEEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEEEEE
T ss_pred cEECCCCCEEEEEcCCCCC-CCcceEEEecC-------CcccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEeEEe
Confidence 3457899999999873222 33455542211 11111111124567788875 35677888754334466778
Q ss_pred EEEE
Q psy11132 195 LQVK 198 (243)
Q Consensus 195 l~v~ 198 (243)
++|.
T Consensus 83 ItVY 86 (91)
T PF03921_consen 83 ITVY 86 (91)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 8877
No 444
>PHA03290 envelope glycoprotein I; Provisional
Probab=31.42 E-value=1.3e+02 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=25.8
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
.-.|.|.+...+|+|.|...+.-.......-+.+.+
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv 163 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGL 163 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEE
Confidence 356899999999999999999876544333333333
No 445
>PHA03289 envelope glycoprotein I; Provisional
Probab=31.31 E-value=1.4e+02 Score=23.05 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=25.9
Q ss_pred eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
-.|.|.+.+.+|+|.|...+.-.......-+.+.+
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv 156 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSV 156 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEE
Confidence 46899999999999999999876554443344433
No 446
>PF04668 Tsg: Twisted gastrulation (Tsg) protein conserved region; InterPro: IPR006761 Tsg was identified in Drosophila melanogaster as being required to specify the dorsal-most structures in the embryo, for example the amnioserosa. Biochemical experiments have revealed three key properties of Tsg: it can synergistically inhibit Dpp/BMP action in both D. melanogaster and vertebrates by forming a tripartite complete between itself, SOG/chordin and a BMP ligand; Tsg seems to enhance the Tld/BMP-1-mediated cleavage rate of SOG/chordin and may change the preference of site utilisation; Tsg can promote the dissociation of chordin cysteine-rich-containing fragments from the ligand to inhibit BMP signalling [, ].
Probab=30.41 E-value=17 Score=23.73 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.8
Q ss_pred ccCcccccccceEEeC
Q psy11132 219 STSYYSFEQDSWMIDN 234 (243)
Q Consensus 219 ~~~~~~~~~~~W~~~~ 234 (243)
.|++.+-..+.||+||
T Consensus 93 sCeSmGAssYRWFHdg 108 (132)
T PF04668_consen 93 SCESMGASSYRWFHDG 108 (132)
T ss_pred HHHhcCcccceeeccc
Confidence 4555556689999987
No 447
>PHA03281 envelope glycoprotein E; Provisional
Probab=30.08 E-value=3.4e+02 Score=22.97 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=46.8
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCccee-EEEEEEEcCC--Cc---cccccCC-----------CCCCCCCcEEEEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQ-VQRLIVNVPP--KI---ESFAFPF-----------DGLPEGARTRVICG 128 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~~~p--~~---~~~~~~~-----------~~~~~g~~~~l~C~ 128 (243)
.+.|.|.+++.+.+|.|+-..+...+.... .+.|.|...+ .+ ...+... ....+|+++.+...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 457899999999999999988855554333 5556665432 11 1111110 11347998887776
Q ss_pred eecC----CCCCEEEEEe
Q psy11132 129 VTHG----DPPLTIRWLK 142 (243)
Q Consensus 129 ~~~~----~p~~~~~W~~ 142 (243)
.... .-...+.|+.
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 5321 1145889986
No 448
>PHA03291 envelope glycoprotein I; Provisional
Probab=29.33 E-value=2.3e+02 Score=22.36 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=27.1
Q ss_pred eEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEEE
Q psy11132 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198 (243)
Q Consensus 163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v~ 198 (243)
-.|.|.+...+|+|.|...+.-.......-+.+.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 568999999999999999998766555444444443
No 449
>PHA03292 envelope glycoprotein I; Provisional
Probab=28.63 E-value=1.5e+02 Score=23.54 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=26.6
Q ss_pred eeEEEEeecCCCCCeeEEEEEEccCcceeeeEEEEE
Q psy11132 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197 (243)
Q Consensus 162 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~l~v 197 (243)
.-.|.|.+...+|+|.|...+.-.......-+.+.+
T Consensus 127 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsv 162 (413)
T PHA03292 127 NVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSA 162 (413)
T ss_pred ceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEE
Confidence 356899999999999999999876654444444433
No 450
>KOG3611|consensus
Probab=23.94 E-value=1.8e+02 Score=25.78 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=40.0
Q ss_pred eEEEEEEeeCCCCCceeEEEECCe------eecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCC-cceeEEE
Q psy11132 26 RASLICSITKGDIPLTIKWLKDGR------YLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQR 98 (243)
Q Consensus 26 ~~~l~C~~~~~~~~~~v~W~~~~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~ 98 (243)
...|.|.. ......+.|+.... ++......... ..+.+.+..++..|.|.|.|.+....- .......
T Consensus 571 ~~~l~c~~--~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~----~~G~lll~~~q~~~~G~y~c~~~e~~~~~~~~~~~ 644 (737)
T KOG3611|consen 571 SEVLRCVP--SSNQAPVVWYHQSTKDGRKEEVRQRDVVSRT----DEGGLVLLSVQKLDGGTYPCYADESSFVSTVISVN 644 (737)
T ss_pred cceeeccc--cccccceeeEeeccCccccceeccCcceeec----ccCceeEEEEeeccCcccccccccCccccceEEEe
Confidence 46788876 33333588984322 12222222111 134477888999999999999875433 2333444
Q ss_pred EEEEc
Q psy11132 99 LIVNV 103 (243)
Q Consensus 99 l~v~~ 103 (243)
+.+..
T Consensus 645 ~~~~~ 649 (737)
T KOG3611|consen 645 LHVAR 649 (737)
T ss_pred eeecC
Confidence 44443
No 451
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=23.19 E-value=27 Score=28.31 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=11.6
Q ss_pred ceEEEEeecCCCCCeeEEEEEEeCCCc-ceeEEEEEEEcCCCcc--------ccccC-----------CCCCCCCCcEEE
Q psy11132 66 NSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIE--------SFAFP-----------FDGLPEGARTRV 125 (243)
Q Consensus 66 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~p~~~--------~~~~~-----------~~~~~~g~~~~l 125 (243)
.+.|.|.+++.+|+|.|+-..++..+. ....+.|.|..+...+ ..+.. ......|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 467999999999999999999866554 3334556655422210 11100 012457998887
Q ss_pred EEEeecC--C-C--CCEEEEEe
Q psy11132 126 ICGVTHG--D-P--PLTIRWLK 142 (243)
Q Consensus 126 ~C~~~~~--~-p--~~~~~W~~ 142 (243)
....... . + ..++.|+.
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEE
Confidence 7655321 1 1 34789986
No 452
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=22.96 E-value=2.4e+02 Score=18.73 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=12.9
Q ss_pred EEEEEEeeCCCCCceeEEEECCeeec
Q psy11132 27 ASLICSITKGDIPLTIKWLKDGRYLD 52 (243)
Q Consensus 27 ~~l~C~~~~~~~~~~v~W~~~~~~~~ 52 (243)
+..+|.+ .+++||.|..+.
T Consensus 68 v~VPC~v-------tykyYk~GDvV~ 86 (160)
T PF03293_consen 68 VKVPCNV-------TYKYYKVGDVVR 86 (160)
T ss_pred EEeeeEE-------EEEEEeeCCEEE
Confidence 3466766 578888886553
No 453
>PF09191 CD4-extracel: CD4, extracellular; InterPro: IPR015274 This domain adopts an immunoglobulin-like beta-sandwich with seven strands in 2 beta sheets, in a Greek key topology. It is predominantly found in the extracellular portion of CD4 proteins, where it enables interaction with major histocompatibility complex class II antigens []. ; PDB: 1WIQ_B 1WIP_B 1WIO_A 3T0E_E 1CID_A.
Probab=22.68 E-value=2.1e+02 Score=17.94 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=19.4
Q ss_pred eEEEEeecCCCCCeeEEEEEEeCCCcceeEEEEE
Q psy11132 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLI 100 (243)
Q Consensus 67 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 100 (243)
-.|++..+..+++|.=.....-..|.....+.|.
T Consensus 74 L~ltL~q~l~q~AGSGnltL~L~~G~L~QeVnLV 107 (108)
T PF09191_consen 74 LTLTLPQALPQYAGSGNLTLTLDKGKLHQEVNLV 107 (108)
T ss_dssp -EEEESSB-GGG-EEEEEEEEBTTSEEEEEEEEE
T ss_pred eEEEccccChhhcCCceEEEEecCCcEeeEEEee
Confidence 4677888888887755555554556555555543
No 454
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=21.69 E-value=2.5e+02 Score=18.61 Aligned_cols=36 Identities=17% Similarity=0.467 Sum_probs=18.2
Q ss_pred CccCCCCCcccccCCeEEEEEEeeCC----CCCceeEEEE
Q psy11132 11 KLSPTNPERTLNVGERASLICSITKG----DIPLTIKWLK 46 (243)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~v~W~~ 46 (243)
.+...|-...+..|++|+|.|..... .....+.++.
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQ 73 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-
T ss_pred EEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEe
Confidence 33334445568889999999997632 1224677764
No 455
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=21.07 E-value=1.8e+02 Score=16.58 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=25.4
Q ss_pred CcccccCCeEEEEEEeeCCCCCceeEEEECCeeecCCCceEEEEeeeeceEEEEeecCCCCCeeEEEEEEeCCCcce
Q psy11132 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94 (243)
Q Consensus 18 ~~~~~~g~~~~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 94 (243)
...+..+..++|.|.. +...|.+..||..-.... .+--..+.....+.+.+.+....+..+
T Consensus 9 ~G~~~~~~~v~l~~~~----~~~~I~YT~DGs~Pt~~s------------~~Y~~Pi~i~~~~~vka~a~~~~g~~s 69 (75)
T PF03174_consen 9 SGTYDEGQTVTLSSDT----PGATIYYTLDGSEPTKSS------------PLYTGPITIPESGTVKARAFDNGGNVS 69 (75)
T ss_dssp -EEEEETTEEEEE-SS----TTSEEEEESSSSSS----------------EE--CCC--B--S--EEEEE-TTS-B-
T ss_pred CCcEecCeEEEEEeCC----CCCEEEEEcCCCcccccC------------cccCcCEEeCCCcEEEEEEEcCCCCcC
Confidence 3445668899999943 233677767765432111 111123444455567777765554433
No 456
>PHA02935 Hypothetical protein; Provisional
Probab=21.00 E-value=90 Score=22.04 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=25.7
Q ss_pred eEEEEeecCCCCCeeEEEEEEccCcce-eeeEEEEEE
Q psy11132 163 SLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK 198 (243)
Q Consensus 163 ~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~l~v~ 198 (243)
..|.|..++.+|+|.|.-+..-..|.. ..+..+.|+
T Consensus 102 tclnisslryedsgsykgvshlkdgvivtttmnisvk 138 (349)
T PHA02935 102 TCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVK 138 (349)
T ss_pred EEeeccceeeccCCcccCchhhcCceEEEEEEEEEEE
Confidence 457788888999999998877777754 334455554
No 457
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=20.89 E-value=1.9e+02 Score=16.78 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=26.6
Q ss_pred cCCCCCcccccCCeEEEEEEeeCCCC--CceeEEEECCeee
Q psy11132 13 SPTNPERTLNVGERASLICSITKGDI--PLTIKWLKDGRYL 51 (243)
Q Consensus 13 ~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~v~W~~~~~~~ 51 (243)
.+.+....+..|+...|...+..+.. ...+.|...+..+
T Consensus 6 ~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~v 46 (81)
T smart00635 6 TVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSV 46 (81)
T ss_pred EEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCcE
Confidence 34455667888999999998654333 3578898766433
Done!