RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11132
(243 letters)
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 150 bits (381), Expect = 9e-45
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 4/191 (2%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP L +GE + C +T G P+ I W KD R + +T V+ +
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVE-NTA 61
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
L + V+ +G Y+C N+ +D+ +L V PP+ P + + TR C
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
+ G P + + W KD + +S ++S + L + ++S SG+YTC A N A
Sbjct: 122 KIG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE-MYNLSVEDSGDYTCEAHNAAG 179
Query: 188 QARYSSKLQVK 198
A S+ L+VK
Sbjct: 180 SASSSTSLKVK 190
Score = 134 bits (340), Expect = 1e-38
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 12/196 (6%)
Query: 8 VPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
PP+ + P R + E C I G + + W KD + S+ ++ V+
Sbjct: 97 EPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES-V 154
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
++L + ++S SG+Y+C N + L V PP P +GA +
Sbjct: 155 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK--KPHPVETLKGADVHL 212
Query: 126 ICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
C + G PP + W KD + L ++ + ++F + + I +V +A GEY C AS
Sbjct: 213 ECELQ-GTPPFQVSWHKDKRELRSGKKYKIMS---ENFLTSIHILNVDSADIGEYQCKAS 268
Query: 184 NTAAQARYSSKLQVKG 199
N + +K
Sbjct: 269 NDVGSYTCVGSITLKA 284
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 156 bits (396), Expect = 1e-44
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 4/196 (2%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ VPP L +GE + C +T G P+ I W KD R + +T
Sbjct: 191 LSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTL- 248
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
+ + L + V+ +G Y+C N+ +D+ +L V PP+ P + +
Sbjct: 249 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEH 308
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
TR C + G P + + W KD + +S ++S + L + ++S SG+YTC A
Sbjct: 309 TRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVESVAV-LEMYNLSVEDSGDYTCEA 366
Query: 183 SNTAAQARYSSKLQVK 198
N A A S+ L+VK
Sbjct: 367 HNAAGSASSSTSLKVK 382
Score = 146 bits (369), Expect = 9e-41
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ +PP + + +G + C I G PL + W KDG L + A L + +
Sbjct: 95 IKERKLPPSFARKLKDVHETLGFPVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTSFI 153
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGLPE 119
+ L I H G Y+C+ N + + +L ++ VPP + D L
Sbjct: 154 HN-VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD-LAL 211
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
G C VT G P+ I W KD + + P ++ L ++ L++ V+ +G+YT
Sbjct: 212 GESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMT-LVENTATLTVLKVTKGDAGQYT 269
Query: 180 CVASNTAAQARYSSKLQVKG 199
C ASN A + S++L V+
Sbjct: 270 CYASNVAGKDSCSAQLGVQE 289
Score = 145 bits (367), Expect = 2e-40
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 6/192 (3%)
Query: 8 VPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
PP+ + P R + E C I G + + W KD + S+ ++ V+
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES-V 346
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
++L + ++S SG+Y+C N + L V PP P + +GA +
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE-TLKGADVHLE 405
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C + G PP + W KD + L + ++F + + I +V +A GEY C ASN
Sbjct: 406 CELQ-GTPPFQVSWHKDKRELRSGKKYKIMS-ENFLTSIHILNVDSADIGEYQCKASNDV 463
Query: 187 AQARYSSKLQVK 198
+ +K
Sbjct: 464 GSDTCVGSITLK 475
Score = 139 bits (351), Expect = 3e-38
Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 4/192 (2%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
PP G L C + G P + W KD R L + I + +
Sbjct: 382 KEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQVSWHKDKRELRSGKKYKI-MSENFL 439
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
+ + I +V + G Y C N V DT V + + PP+ G ++
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDIS-TVVGEEVQLQ 498
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
+ G P+++ W KD + + L + A++G+YTC N A
Sbjct: 499 ATIE-GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557
Query: 187 AQARYSSKLQVK 198
+ L V
Sbjct: 558 GTQECFATLSVL 569
Score = 126 bits (317), Expect = 2e-33
Identities = 52/207 (25%), Positives = 82/207 (39%), Gaps = 8/207 (3%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP +GE +L C + G + I W K+ L ++ A + + +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNN-VAS 62
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGARTRVI 126
LVI+ V G Y+C N V L++ SFA + G
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C + G PL + W KDG+ L + S + + ++L I +H G+Y C ASN
Sbjct: 123 CRIN-GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQ-ILQTDQSHVGQYNCSASNPL 180
Query: 187 AQARYSSKLQVKGNLNRLPPSYTLVFS 213
A S+KL + + +PP + L
Sbjct: 181 GTASSSAKLTLSE--HEVPPFFDLKPV 205
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 155 bits (393), Expect = 2e-43
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 8/193 (4%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P + ++ + GE + C + G +I W +D R L + + N
Sbjct: 526 GLPYIRQM-EKKAIVAGETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFP----NG 579
Query: 68 MLVIDSVSARH-SGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRV 125
L+I++V Y+C +N + + V V P+I FAF G +
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C V GD PL I W DG+ +S + S + S+L+I +V A+H+G +TC A N
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNL 699
Query: 186 AAQARYSSKLQVK 198
A ++++ L V
Sbjct: 700 AGHQQFTTPLNVY 712
Score = 154 bits (390), Expect = 4e-43
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 12/203 (5%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + E VG+ +L CS+ GD+PL I W DG+ + ++ + V + S+
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVIC 127
L I++V A H+GN++C RN+ L V VPP+ P D +G+ +V C
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWIL--EPTDKAFAQGSDAKVEC 736
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF--SSLLSINSVSAAHSGEYTCVASNT 185
G P + W K + + L ++++ + G Y C A N
Sbjct: 737 KAD-GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAING 795
Query: 186 AAQARYSSK-LQVKGNLNRLPPS 207
+ + V+
Sbjct: 796 IGSGLSAVIMISVQA-----HHH 813
Score = 126 bits (317), Expect = 2e-33
Identities = 53/204 (25%), Positives = 72/204 (35%), Gaps = 16/204 (7%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI--- 59
+ PP + E T+ G L C G+ I W DG+ + N+ +
Sbjct: 423 LGGRFDPPVIRQAFQEETMEPGPSVFLKCV-AGGNPTPEISWELDGKKIANNDRYQVGQY 481
Query: 60 -THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GL 117
T S L I SV A G Y C ++ V +L V P I +
Sbjct: 482 VTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ---MEKKAI 538
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH-SG 176
G V C V G P +I W +D + L V + L I +V
Sbjct: 539 VAGETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFPNGT----LIIENVERNSDQA 593
Query: 177 EYTCVASNTAAQ-ARYSSKLQVKG 199
YTCVA N AR S ++QV
Sbjct: 594 TYTCVAKNQEGYSARGSLEVQVMV 617
Score = 126 bits (317), Expect = 3e-33
Identities = 54/213 (25%), Positives = 78/213 (36%), Gaps = 20/213 (9%)
Query: 4 IFSTVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYL-DNSAALSITH 61
I S VP +S + +T + +L+C G +W K A +
Sbjct: 242 ISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDR 300
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEG 120
V Q + L+I SG Y C V N V ++ L V P + P + G
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI--DPPTQTVDFG 358
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
C T G+P T+ W+KDGK + S+L I SV G Y C
Sbjct: 359 RPAVFTCQYT-GNPIKTVSWMKDGKAIGHS-----------ESVLRIESVKKEDKGMYQC 406
Query: 181 VASNTAAQARYSSKLQVKGNLNRLPPSYTLVFS 213
N A S++L++ G + PP F
Sbjct: 407 FVRNDRESAEASAELKLGGRFD--PPVIRQAFQ 437
Score = 111 bits (278), Expect = 5e-28
Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 16/207 (7%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITK--GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
V + + G A + C I D + W D A
Sbjct: 136 VVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195
Query: 65 Y-NSMLVIDSVSARHS-GNYSCTVRNMVAEDTQVQRLIVNV----------PPKIESFAF 112
+ L I V +Y C ++ + +T++ + P + F
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255
Query: 113 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVS 171
+ ++C G P RW K + + + V ++D + S L I
Sbjct: 256 DMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 172 AAHSGEYTCVASNTAAQARYSSKLQVK 198
SG+Y CV +N+ + L V
Sbjct: 315 VEDSGKYLCVVNNSVGGESVETVLTVT 341
Score = 81.9 bits (202), Expect = 5e-18
Identities = 29/183 (15%), Positives = 48/183 (26%), Gaps = 11/183 (6%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVD---QYNSMLVIDSVS 75
+ A + C + G+ I W++ DG + + L D + D
Sbjct: 50 DFSNSTGAEIECKAS-GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQ 108
Query: 76 ARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTRVICGVT--HG 132
H+ Y+C RN + V E+ + G + C +
Sbjct: 109 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVA 167
Query: 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS-LLSINSVSAAHS-GEYTCVASNTAAQAR 190
D + W D + S L I V Y C +
Sbjct: 168 DFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGET 227
Query: 191 YSS 193
S
Sbjct: 228 RLS 230
Score = 78.1 bits (192), Expect = 1e-16
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--DNSAALSITHVDQ 64
VPP+ ++ G A + C G + W K + ++
Sbjct: 712 YVPPRWILEPTDKAFAQGSDAKVECKAD-GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV 770
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDT-QVQRLIVNVPPKIE 108
L +D++ + G Y C N + V + V
Sbjct: 771 EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815
Score = 73.0 bits (179), Expect = 4e-15
Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 7/124 (5%)
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQR--LIVNVPPKIESFAFPFDGLPEGARTRVI 126
+ + + + ++ T P +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVA 182
C + G+P I W++ P F + + H+ Y C+A
Sbjct: 61 CKAS-GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 183 SNTA 186
N
Sbjct: 120 RNQF 123
Score = 34.5 bits (79), Expect = 0.025
Identities = 3/45 (6%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
+++ + + VA ++ ++ P +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPD---ADQKGPVFL 42
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 147 bits (373), Expect = 1e-41
Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 10/201 (4%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY-- 65
P +S + L GE ++ C+I + W ++ + H +
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269
Query: 66 --NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGA 121
+ L I S SG + C N L V I F + +G
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGE 177
+I P +W+ + + ++ + + S L + + G
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389
Query: 178 YTCVASNTAAQARYSSKLQVK 198
YT + SN+ A + + V
Sbjct: 390 YTFLVSNSDVNAAIAFNVYVN 410
Score = 127 bits (319), Expect = 5e-34
Identities = 42/211 (19%), Positives = 64/211 (30%), Gaps = 26/211 (12%)
Query: 8 VPPKLSPT---NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
++ N +N GE LI P +W+ R + ++
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368
Query: 65 ----YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEG 120
Y S L + + G Y+ V N + VN P+I +
Sbjct: 369 SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILT-------YDRL 421
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPL----SPRFPVNVSDLDSFS-------SLLSINS 169
+ C G P TI W + PV+V L+S SI+S
Sbjct: 422 VNGMLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDS 480
Query: 170 VSAAHSGEYTCVASNTAAQARYSSKLQVKGN 200
+ H+G C A N + KGN
Sbjct: 481 SAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 114 bits (286), Expect = 2e-29
Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 17/221 (7%)
Query: 4 IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
+F P KL + + C +T ++ G+ L D
Sbjct: 109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKD---LRFIPD 165
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV------PPKIESFAFPFDGL 117
+++ A H C+V + ++ I+ V P + + L
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEG-KSVLSEKFILKVRPAFKAVPVVSVSKASYL-L 223
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS----SLLSINSVSAA 173
EG V C + + W ++ + N F+ + L+I+S
Sbjct: 224 REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVN 283
Query: 174 HSGEYTCVASNTAAQARYSSKLQV--KGNLNRLPPSYTLVF 212
SG + C A+NT A ++ L+V KG +N P T VF
Sbjct: 284 DSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Score = 93.2 bits (231), Expect = 6e-22
Identities = 41/210 (19%), Positives = 75/210 (35%), Gaps = 27/210 (12%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP + P + + VG+ L+C+ +KW + N + +
Sbjct: 35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG-----FVKWTFEILDETN---------ENKQN 80
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
+ + A ++G Y+CT ++ ++ + V P K+ G E T V C
Sbjct: 81 EWITEKAEATNTGKYTCTNKHGLSNSI---YVFVRDPAKLFLVDRSLYGK-EDNDTLVRC 136
Query: 128 GVTHGDPPLTIRWLK--DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
+T DP +T LK GKPL D + ++ + A H C
Sbjct: 137 PLT--DPEVTNYSLKGCQGKPLPKDLRFIP---DPKAGIMIKSVKRAYHRLCLHCSVDQ- 190
Query: 186 AAQARYSSKLQVK-GNLNRLPPSYTLVFSQ 214
++ S K +K + P ++ +
Sbjct: 191 EGKSVLSEKFILKVRPAFKAVPVVSVSKAS 220
Score = 68.9 bits (168), Expect = 1e-13
Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 76 ARHSGNYSCTV----RNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
AR + ++ C + R PP I + G R++C
Sbjct: 4 ARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLI-VRVGDEIRLLCTDPG 62
Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
++W + + ++ + A ++G+YTC + + + Y
Sbjct: 63 -----FVKWTFEILDETN---------ENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY 108
Score = 61.6 bits (149), Expect = 3e-11
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 18/112 (16%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA----------- 56
P++ T + L C G TI W +A
Sbjct: 411 TKPEIL------TYDRLVNGMLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLN 463
Query: 57 LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
S + IDS + +H+G C N V + + K +
Sbjct: 464 SSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQ 515
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 142 bits (360), Expect = 7e-40
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 15/198 (7%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-----H 61
+ T P+ L VGE + C + + W + + L+ ++
Sbjct: 225 DLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEG 120
+ SV+ +G Y+C+ ++ + + I + D + +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA---LVTIVEKGFINATNSSEDYEIDQY 341
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
P + W K +S GEY
Sbjct: 342 EEFCFSVRFK-AYPQIRCTWTFSRKSFPCE-----QKGLDNGYSISKFCNHKHQPGEYIF 395
Query: 181 VASNTAAQARYSSKLQVK 198
A N AQ L ++
Sbjct: 396 HAENDDAQFTKMFTLNIR 413
Score = 122 bits (307), Expect = 2e-32
Identities = 28/212 (13%), Positives = 51/212 (24%), Gaps = 28/212 (13%)
Query: 8 VPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
++ TN + E K + W +
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCE-----QKGLDN 376
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
+ G Y N A+ T++ L + P++ L E + ++
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV---------LAEASASQA 427
Query: 126 ICGVTHGDPPLTIRWLKDG----------KPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
C G P + W K N + S ++N A
Sbjct: 428 SCFSD-GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKG 486
Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
C A N+ + + L G +
Sbjct: 487 FLVKCCAYNSLGTSCETILLNSPGPFPFIQDG 518
Score = 109 bits (272), Expect = 2e-27
Identities = 17/203 (8%), Positives = 51/203 (25%), Gaps = 12/203 (5%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
++V +L + ++ W+ L+ + + +
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQPHFDLQN--RGVVS 104
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
+VI ++ +G Y +++ T + + + + ++C
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLY--TLRRPYFRKMENQDALVC- 161
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
++ P + W+ + + + C A N +
Sbjct: 162 ISESVPEPIVEWVLCDSQGES-----CKEESPAVVKKEEKVLHELFGTDIRCCARNELGR 216
Query: 189 ARYSS-KLQVKGNLNRLPPSYTL 210
+ + P L
Sbjct: 217 ECTRLFTIDLNQTPQTTLPQLFL 239
Score = 104 bits (259), Expect = 9e-26
Identities = 29/198 (14%), Positives = 60/198 (30%), Gaps = 17/198 (8%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
++ L T E + I++ ++W+ S
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQG-----ESCKEESPAV 190
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
+ + C RN + + T++ + +N P+ P L G +
Sbjct: 191 VKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT---LPQLFLKVGEPLWI 247
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEYTC 180
C H + + W + K L +S + ++SV+ +G YTC
Sbjct: 248 RCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 181 VASNTAAQARYSSKLQVK 198
+S S+ + +
Sbjct: 308 SSSK---HPSQSALVTIV 322
Score = 71.7 bits (175), Expect = 1e-14
Identities = 18/151 (11%), Positives = 38/151 (25%), Gaps = 23/151 (15%)
Query: 79 SGNYSCTVRNMVAEDTQVQ-----------------RLIVNVPPKIESFAFPFDGLPEGA 121
C + N D+ V L + A + A
Sbjct: 7 LPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE--VDVSA 64
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
+ V ++ W+ L+ + + + + I ++ +GEY
Sbjct: 65 SITLQVLVD-APGNISCLWVFKHSSLNCQ--PHFDLQNRGVVSMVILKMTETQAGEYLLF 121
Query: 182 ASNTAAQARYSSKLQVKGNLN-RLPPSYTLV 211
+ A + ++ L L Y
Sbjct: 122 IQSEATNYTILFTVSIRNTLLYTLRRPYFRK 152
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 140 bits (353), Expect = 2e-39
Identities = 33/198 (16%), Positives = 59/198 (29%), Gaps = 15/198 (7%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-----HV 62
+ T P+ L VGE + C + + W + + L+ ++
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGA 121
+ SV+ +G Y+C+ ++ V + I + D + +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT---IVEKGFINATNSSEDYEIDQYE 342
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
P + W K P LD+ S +S GEY
Sbjct: 343 EFCFSVRFK-AYPQIRCTWTFSRKSF----PCEQKGLDNGYS-ISKFCNHKHQPGEYIFH 396
Query: 182 ASNTAAQARYSSKLQVKG 199
A N AQ L ++
Sbjct: 397 AENDDAQFTKMFTLNIRS 414
Score = 105 bits (263), Expect = 1e-26
Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 15/197 (7%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
++ L T E + I++ ++W+ ++ S V +
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE 195
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
V+ + + C RN + + I P L G +
Sbjct: 196 --KVLHEL---FGTDIRCCARNELGRECTRLFTIDLNQTPQ--TTLPQLFLKVGEPLWIR 248
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEYTCV 181
C H + + W + K L +S + ++SV+ +G YTC
Sbjct: 249 CKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCS 308
Query: 182 ASNTAAQARYSSKLQVK 198
+S +Q S+ + +
Sbjct: 309 SSKHPSQ---SALVTIV 322
Score = 100 bits (250), Expect = 8e-25
Identities = 17/187 (9%), Positives = 47/187 (25%), Gaps = 11/187 (5%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
++V +L + ++ W+ L+ ++
Sbjct: 48 SSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFKHSSLNCQP--HFDLQNRGVVS 104
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
+VI ++ +G Y +++ T + + + P+ E ++C
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQDA-LVCI 162
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
P + W+ + + + + C A N +
Sbjct: 163 SE-SVPEPIVEWVLCDSQ-----GESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGR 216
Query: 189 ARYSSKL 195
Sbjct: 217 ECTRLFT 223
Score = 79.3 bits (195), Expect = 3e-17
Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 9/142 (6%)
Query: 71 IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ S S +Y + ED L + A + + A + V
Sbjct: 19 NNDSSVGKSSSYPMVSESP--EDLGC-ALRPQSSGTVYE-AAAVE-VDVSASITLQVLVD 73
Query: 131 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
++ W+ L+ + ++ + S + I ++ +GEY + A
Sbjct: 74 -APGNISCLWVFKHSSLNCQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYT 130
Query: 191 YSSKLQVKGNLN-RLPPSYTLV 211
+ ++ L L Y
Sbjct: 131 ILFTVSIRNTLLYTLRRPYFRK 152
Score = 66.6 bits (162), Expect = 5e-13
Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 6/102 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
++ TN + + S+ K + W +
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----KGLDNG 377
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
+ G Y N A+ T++ L + K
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 134 bits (338), Expect = 3e-39
Identities = 43/206 (20%), Positives = 74/206 (35%), Gaps = 17/206 (8%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY--- 65
+ + PE + L C+ + G ++W D + Y
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62
Query: 66 ----NSMLVIDSVSARHSGNYSCTVRNMV--AEDTQVQRLIVNVPPKIESFAFPFDGLPE 119
+ + SV+ +G Y+C V + +LIV VPP + P
Sbjct: 63 VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS-SATI 121
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAA 173
G R + C G PP W KDG + F + L+ + L + +SA+
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 174 HSGEYTCVASNTAAQARYSSKLQVKG 199
+GEY+C A N S+ ++++
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 78.8 bits (194), Expect = 5e-18
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH------ 61
VPP N + +G RA L CS G P W KDG + + +
Sbjct: 106 VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 165
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
++ LV D +SA +G YSC RN + +
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 137 bits (346), Expect = 2e-38
Identities = 49/193 (25%), Positives = 73/193 (37%), Gaps = 12/193 (6%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
G+ A L C ++ G P + WL+ + S +
Sbjct: 219 HRQLYFLQRPSNVIAIEGKDAVLECCVS-GYPPPSFTWLRGEEVIQLR---SKKYSLLGG 274
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
S L+I +V+ SG Y+C V + L V VPP + P + E
Sbjct: 275 SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN--HPSNLYAYESMDIEF 332
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C V+ G P T+ W+K+G + P + S L I V + G Y CVA N
Sbjct: 333 ECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVG----GSNLRILGVVKSDEGFYQCVAENE 387
Query: 186 AAQARYSSKLQVK 198
A A+ S++L V
Sbjct: 388 AGNAQSSAQLIVP 400
Score = 101 bits (253), Expect = 3e-25
Identities = 46/217 (21%), Positives = 73/217 (33%), Gaps = 17/217 (7%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPL-TIKWLKDGRYLDNSAALSITHVDQYN 66
+ G L CS D + IKW KDG L + N
Sbjct: 20 RSLHFVSEPSDAVTMRGGNVLLNCSAE-SDRGVPVIKWKKDGLILALGMDDRKQQLP--N 76
Query: 67 SMLVIDSV-----SARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAFPFDG-LP 118
L+I ++ G Y C + + +++V P + S
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ--TESITAF 134
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
G + C V GDP TI W K+ + L+P P + + S L I+ + SG Y
Sbjct: 135 MGDTVLLKCEVI-GDPMPTIHWQKNQQDLNP-IPGDSRVVVLPSGALQISRLQPGDSGVY 192
Query: 179 TCVASNTA-AQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
C A N A + +++++ + Y L
Sbjct: 193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS 229
Score = 67.6 bits (165), Expect = 2e-13
Identities = 23/97 (23%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
VPP C+++ G T+ W+K+G + S I S
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVG----GS 365
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
L I V G Y C N +LIV P
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 128 bits (324), Expect = 3e-37
Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 5/195 (2%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S P + + T +GE A L C I G IKW + G+ L S ++ +
Sbjct: 4 SGEAPGIRKEMKDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGART 123
++ L + + G Y+C N V E +L++ P+ + G+
Sbjct: 63 HT-LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTL 121
Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
R+ G P + W K L + + + + ++ L+ N H+G+Y S
Sbjct: 122 RLHVMYI-GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
Query: 184 NTAAQARYSSKLQVK 198
N ++++
Sbjct: 181 NVFGTVDAILDVEIQ 195
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 133 bits (335), Expect = 5e-37
Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 12/194 (6%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQY 65
P + + G+ + C + + K+G+ ++ + IT H
Sbjct: 210 KGEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTR 124
L+ + G Y+C V N V + +L V PK E + +G
Sbjct: 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328
Query: 125 VICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
+ C VT G P + W + KPLS R V S L I V G Y C A+
Sbjct: 329 IPCKVT-GLPAPNVVWSHNAKPLSGGRATVT-------DSGLVIKGVKNGDKGYYGCRAT 380
Query: 184 NTAAQARYSSKLQV 197
N + + +QV
Sbjct: 381 NEHGDKYFETLVQV 394
Score = 109 bits (273), Expect = 4e-28
Identities = 38/221 (17%), Positives = 63/221 (28%), Gaps = 24/221 (10%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH---VD 63
T E+T G L C + I W K D +A ++
Sbjct: 98 TYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA 157
Query: 64 QYNSMLVIDSVS---ARHSGNYSCTVRNMVAEDTQVQ---RLIVNVPPKIESFAFP-FDG 116
+ L V+ Y CT +N ++ V + P
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
Query: 117 LP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINS 169
+ G T + C +P + K+GK ++ ++ + L +
Sbjct: 218 VSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 170 VSAAHSGEYTCVASNTAAQA-RYSSKLQVKGNLNRLPPSYT 209
G YTC N + ++S KL V P Y
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-----APKYE 312
Score = 106 bits (266), Expect = 4e-27
Identities = 36/193 (18%), Positives = 52/193 (26%), Gaps = 10/193 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P L E L C I D + W KDG+ + + D
Sbjct: 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD--EG 62
Query: 68 MLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
LV A G+Y C ++V + + EG ++
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI-EGRPFQLD 121
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD---LDSFSSLLSINSVS---AAHSGEYTC 180
C + + P I W K P V D L V+ + +Y C
Sbjct: 122 CVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVC 181
Query: 181 VASNTAAQARYSS 193
A N A
Sbjct: 182 TAKNAAVDEEVVL 194
Score = 56.1 bits (135), Expect = 2e-09
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 7 TVPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
PK + G+ ++ C +T G + W + + L
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG------RATVT 358
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
+S LVI V G Y C N + + VN
Sbjct: 359 DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 395
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 136 bits (343), Expect = 6e-37
Identities = 35/192 (18%), Positives = 64/192 (33%), Gaps = 19/192 (9%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+P +N + + + + C T W +G+ L S + N
Sbjct: 466 LPKPSISSNNSKPVEDKDAVAFTCEP--EAQNTTYLWWVNGQSLPVS---PRLQLSNGNR 520
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
L + +V+ + Y C ++N V+ + + L V P + P GA +
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C +P W +G P + +L I ++ ++G Y C SN A
Sbjct: 581 CHSA-SNPSPQYSWRINGIPQQ------------HTQVLFIAKITPNNNGTYACFVSNLA 627
Query: 187 AQARYSSKLQVK 198
S +
Sbjct: 628 TGRNNSIVKSIT 639
Score = 128 bits (323), Expect = 3e-34
Identities = 41/208 (19%), Positives = 75/208 (36%), Gaps = 20/208 (9%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
V P ++ N + + +L C T W + + L S +
Sbjct: 284 VYAEPPKPFITSNNS-NPVEDEDAVALTCEPE--IQNTTYLWWVNNQSLPVS---PRLQL 337
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGLPEGA 121
N L + SV+ G Y C ++N ++ D + L V P + + + G
Sbjct: 338 SNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
+ C +PP WL DG + L I++++ +SG YTC
Sbjct: 398 NLSLSCHAA-SNPPAQYSWLIDGNIQQH------------TQELFISNITEKNSGLYTCQ 444
Query: 182 ASNTAAQARYSSKLQVKGNLNRLPPSYT 209
A+N+A+ ++ + + PS +
Sbjct: 445 ANNSASGHSRTTVKTITVSAELPKPSIS 472
Score = 115 bits (289), Expect = 1e-29
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 22/201 (10%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
++ P + + G SL C + P WL DG
Sbjct: 374 ILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGNIQ---------- 422
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL---P 118
Q+ L I +++ ++SG Y+C N + ++ + V ++ + +
Sbjct: 423 --QHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVE 480
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
+ C T W +G+ L + +S+ + L++ +V+ + Y
Sbjct: 481 DKDAVAFTCEP--EAQNTTYLWWVNGQSLPVSPRLQLSNGN---RTLTLFNVTRNDARAY 535
Query: 179 TCVASNTAAQARYSS-KLQVK 198
C N+ + R L V
Sbjct: 536 VCGIQNSVSANRSDPVTLDVL 556
Score = 111 bits (280), Expect = 2e-28
Identities = 35/214 (16%), Positives = 72/214 (33%), Gaps = 21/214 (9%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
++ +P +N + + + + C T W + + L S L +++
Sbjct: 104 FRVYPELPKPSISSNNSKPVEDKDAVAFTCEPE--TQDATYLWWVNNQSLPVSPRLQLSN 161
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEG 120
N L + +V+ + +Y C +N V+ L V P + + G
Sbjct: 162 G---NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
+ C +PP W +G + L I +++ +SG YTC
Sbjct: 219 ENLNLSCHAA-SNPPAQYSWFVNGTFQQS------------TQELFIPNITVNNSGSYTC 265
Query: 181 VASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
A N+ ++ + + PP + +
Sbjct: 266 QAHNSDTGLNRTTVTTI--TVYAEPPKPFITSNN 297
Score = 102 bits (256), Expect = 3e-25
Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 21/188 (11%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + + + GE +L C + P W +G + +
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAA-SNPPAQYSWFVNGTFQQS------------TQE 249
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV---PPKIESFAFPFDGLPEGARTRV 125
L I +++ +SG+Y+C N + + V PPK + + + + +
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL 309
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C + W + + L + +S + + L++ SV+ G Y C N
Sbjct: 310 TCEPE-IQNTTYL-WWVNNQSLPVSPRLQLS---NDNRTLTLLSVTRNDVGPYECGIQNE 364
Query: 186 AAQARYSS 193
+
Sbjct: 365 LSVDHSDP 372
Score = 81.5 bits (201), Expect = 6e-18
Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 23/184 (12%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT---------------HVDQYNSM 68
G+ L+ + W K R N + + N+
Sbjct: 14 GKEVLLLVHNLPQHLF-GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNAS 72
Query: 69 LVIDSVSARHSGNYSCTVRN--MVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
L+I ++ +G Y+ V +V E+ Q + PK + + +
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFT 132
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C T W + + L + +S + + L++ +V+ + Y C N
Sbjct: 133 CEPE--TQDATYLWWVNNQSLPVSPRLQLS---NGNRTLTLFNVTRNDTASYKCETQNPV 187
Query: 187 AQAR 190
+ R
Sbjct: 188 SARR 191
Score = 72.7 bits (178), Expect = 5e-15
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + P+ + G +L C + W +G + +
Sbjct: 559 PDTPIISPPDSSYLSGANLNLSCHSA-SNPSPQYSWRINGIPQQH------------TQV 605
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
L I ++ ++G Y+C V N+ + V
Sbjct: 606 LFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641
Score = 43.0 bits (101), Expect = 5e-05
Identities = 10/90 (11%), Positives = 25/90 (27%), Gaps = 16/90 (17%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLK---------------DGKPLSPRFPVNVSDLDSFSS 163
EG ++ W K + +P + ++ ++
Sbjct: 13 EGKEVLLLVHNL-PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSS 193
L I ++ +G YT + ++
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEAT 101
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 129 bits (327), Expect = 1e-36
Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 19/205 (9%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ GE A ++C ++ + WL + + + N+
Sbjct: 97 QKLTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLA--NN 153
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFD-GLPEGARTR 124
L I +++ G Y C R D + +IVNVPP I F+ G
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
C + G P I W ++GK + ++ + S+ + L++ ++ + G Y C A
Sbjct: 214 FSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN-----TELTVRNIINSDGGPYVCRA 267
Query: 183 SNTAAQARYSSKLQVKGNLNRLPPS 207
+N A + + LQV
Sbjct: 268 TNKAGEDEKQAFLQVFV-----QHH 287
Score = 115 bits (290), Expect = 3e-31
Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 14/209 (6%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVDQ 64
S +++ + + L+VGE C+ G+ P +I W G + ++ + + +
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAI-GE-PESIDWYNPQGEKIISTQRVVVQK-EG 57
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDG-LPEGAR 122
S L I + + +G Y C + + + L + +G
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE--VVSPQEFKQGED 115
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
V+C V+ P + WL + ++ + L + + L I +++ + G Y C
Sbjct: 116 AEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNN--LQILNINKSDEGIYRCEG 172
Query: 183 SNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
A + V N +PP+ ++
Sbjct: 173 RVEARGEIDFRDIIVIVN---VPPAISMP 198
Score = 72.2 bits (177), Expect = 4e-15
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 8 VPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
VPP +S + T GE + C + G I W ++G+ ++ + +
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILK---GS 246
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
N+ L + ++ G Y C N ED + L V V
Sbjct: 247 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHH 289
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 131 bits (332), Expect = 2e-36
Identities = 42/198 (21%), Positives = 68/198 (34%), Gaps = 13/198 (6%)
Query: 3 VIFSTVPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
+ P + P + V G L C + G I W K G L +
Sbjct: 214 GVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDLPSDK----A 268
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPE 119
+ +N L I +VS SG Y C N + + V P P + L
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLD--EPKNLILAP 326
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
G R++C G+P T++W+ +G+PL P ++ + + Y
Sbjct: 327 GEDGRLVCRAN-GNPKPTVQWMVNGEPLQSAPPNPNREVA--GDTIIFRDTQISSRAVYQ 383
Query: 180 CVASNTAAQARYSSKLQV 197
C SN ++ + V
Sbjct: 384 CNTSNEHGYLLANAFVSV 401
Score = 119 bits (300), Expect = 6e-32
Identities = 47/210 (22%), Positives = 72/210 (34%), Gaps = 23/210 (10%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG-RYLDNSAALSITH 61
+ S P + G +L C+ G I W+ + +S H
Sbjct: 110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGH 169
Query: 62 VDQYNSMLVIDSVSAR-HSGNYSCTVRNMVAEDTQVQ---RLIVNVPPKIESFAFPFDGL 117
N L +V + +YSC R Q + L V + F
Sbjct: 170 ----NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYP 225
Query: 118 P---------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 168
G + C + G P I W K G L P + + ++F+ L I
Sbjct: 226 QGTASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDL----PSDKAKFENFNKALRIT 280
Query: 169 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
+VS SGEY C+ASN R++ ++VK
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVK 310
Score = 98.0 bits (244), Expect = 5e-24
Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 23/224 (10%)
Query: 7 TVPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
T PP + + ++ + + C G+ + W ++ R+ + + ++ +
Sbjct: 14 TQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSMR-RR 71
Query: 66 NSMLVIDSVSAR----HSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEG 120
+ LVID S + G Y C RN + RL V+ P + EG
Sbjct: 72 SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEG 131
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL----LSINSVSAA-HS 175
A + C G P I W+ S L ++V
Sbjct: 132 APLTLQCNPPPGLPSPVIFWMSSSMEPIT-------QDKRVSQGHNGDLYFSNVMLQDMQ 184
Query: 176 GEYTCVASNTAAQARYSS---KLQVKGNLNRLPPSYTLVFSQAS 216
+Y+C A L+V + + ++ Q +
Sbjct: 185 TDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT 228
Score = 62.6 bits (152), Expect = 1e-11
Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 157
+ + PP I + + + C G+P + W ++ + + VS
Sbjct: 10 QNELTQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSM 68
Query: 158 LDSFSSLLS---INSVSAAHSGEYTCVASNTAAQAR-YSSKLQVKG 199
+L+ + GEY C A N A +LQV
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSK 114
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 126 bits (317), Expect = 3e-36
Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 14/199 (7%)
Query: 7 TVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
++P P T GE + C + G I W ++G+ ++ + +
Sbjct: 1 SMPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEEN---EKYILKGS 56
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
N+ L + ++ G Y C N ED + L V V P I + E + +
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQ--LKNETTYENGQVTL 114
Query: 126 ICGVTHGDPPLTIRWLK--DGKPLSPRFPVN----VSDLDSFSSLLSINSVSAAHSGEYT 179
+C G+P I W + DG + SS L I V + SG Y
Sbjct: 115 VCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 173
Query: 180 CVASNTAAQARYSSKLQVK 198
C A++ + S L ++
Sbjct: 174 CEAASRIGGHQKSMYLDIE 192
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 126 bits (318), Expect = 3e-36
Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 26/204 (12%)
Query: 16 NPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVS 75
+ + E L +T L + W +G + S + + L I+ +
Sbjct: 9 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW-LQINEPT 67
Query: 76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI--------------ESFAFPFDGLP--- 118
G Y + + + L + ++ A GLP
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127
Query: 119 ---EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAA 173
EG + C V GDPP + WLK+ K L + + + +IN VS A
Sbjct: 128 TIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY--FTINGVSTA 184
Query: 174 HSGEYTCVASNTAAQARYSSKLQV 197
SG+Y V N + V
Sbjct: 185 DSGKYGLVVKNKYGSETSDFTVSV 208
Score = 77.2 bits (190), Expect = 1e-17
Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
L T+ G+ +L C++ GD P + WLK+ + L + ++ +
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
I+ VS SG Y V+N +T + V +P
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211
Score = 74.5 bits (183), Expect = 2e-16
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
EG + + VT+ L + W +G + V L IN + G+Y
Sbjct: 18 EGIQ--LYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ-INEPTPNDKGKY 74
Query: 179 TCVASNTAAQARYSSKLQVKG 199
+ + + L +
Sbjct: 75 VMELFDGKTGHQKTVDLSGQA 95
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 127 bits (321), Expect = 8e-36
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 8/196 (4%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ GE A ++C + +P TI W GR + + + N+
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--NN 155
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQR--LIVNVPPKIESFAFPFD-GLPEGARTR 124
L I + G Y C R + + + +IVNVPP +++ + G
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVT 215
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVAS 183
++C G P T+ W KDG+P+ + SS L+I +V EY C+A
Sbjct: 216 LVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE 274
Query: 184 NTAAQARYSSKLQVKG 199
N A + S L+V
Sbjct: 275 NKAGEQDASIHLKVFA 290
Score = 117 bits (294), Expect = 8e-32
Identities = 37/195 (18%), Positives = 64/195 (32%), Gaps = 15/195 (7%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQ 64
+ P + ++VGE +C + I W + N +S+ D
Sbjct: 6 DIVPS------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFD-GLPEGAR 122
+S L I + + +G Y C V ++ + + ++ P EG
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN--APTPQEFKEGED 117
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
++C V P TI W G+ + + V L + L I + G Y C
Sbjct: 118 AVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--LQIRGIKKTDEGTYRCEG 174
Query: 183 SNTAAQARYSSKLQV 197
A +QV
Sbjct: 175 RILARGEINFKDIQV 189
Score = 57.2 bits (138), Expect = 5e-10
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 175
G +C V I W +G+ LSP ++V D SS L+I + + +
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDA 74
Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
G Y CV + + + + VK
Sbjct: 75 GIYKCVVTAEDGT-QSEATVNVK 96
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 124 bits (313), Expect = 2e-35
Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 18/205 (8%)
Query: 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY---- 65
+ + + E L C+ + G ++W + Y
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 66 ---NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR--LIVNVPPKIESFAFPFDGLPEG 120
+S + SV+ + +G Y+C V ++ L V VPP + + P + G
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPS-SVTIG 119
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLSINSVSAA 173
R + C G PP W KDG + F + +D S L + V+A
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 174 HSGEYTCVASNTAAQARYSSKLQVK 198
SGEY C A N A S +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMD 204
Score = 81.6 bits (201), Expect = 4e-19
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 7/105 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT------- 60
VPP + ++ +G RA L CS G P W KDG + + A
Sbjct: 103 VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 162
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+D + L+ D V+A SG Y C +N + + ++
Sbjct: 163 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 128 bits (323), Expect = 3e-35
Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 17/196 (8%)
Query: 4 IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI-THV 62
I S+ P + L V SL+C G + +W K A+ + V
Sbjct: 207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRV 265
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEGA 121
Q + L+I SG Y C V N V ++ L V P + P + G
Sbjct: 266 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI--DPPTQTVDFGR 323
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
C T G+P T+ W+KDGK + S+L I SV G Y C
Sbjct: 324 PAVFTCQYT-GNPIKTVSWMKDGKAIGHS-----------ESVLRIESVKKEDKGMYQCF 371
Query: 182 ASNTAAQARYSSKLQV 197
N A S++L++
Sbjct: 372 VRNDRESAEASAELKL 387
Score = 105 bits (263), Expect = 9e-27
Identities = 41/216 (18%), Positives = 72/216 (33%), Gaps = 20/216 (9%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITK--GDIPLTIKWLKDGRYLD-NSAALSITHVDQ 64
V + + G A + C I D + W D A ++
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161
Query: 65 YNSMLVIDSVSARHS-GNYSCTVRNMVAEDTQVQ----RLIVNVP-----PKIESFAFPF 114
+ L I V +Y C ++ + +T++ RL++ P P+ +
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAA 173
L ++C G P + RW K + + + V ++D + S L I
Sbjct: 222 LELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 280
Query: 174 HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
SG+Y CV +N+ + L V P S
Sbjct: 281 DSGKYLCVVNNSVGGESVETVLTVTA-----PLSAK 311
Score = 77.3 bits (190), Expect = 1e-16
Identities = 33/222 (14%), Positives = 61/222 (27%), Gaps = 18/222 (8%)
Query: 8 VPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVD- 63
P P ++ A + C G+ I W++ DG + + L D
Sbjct: 2 KGPVFL-KEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 64 --QYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEG 120
+ D H+ Y+C RN + ++ + V E+ + G
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVI-RG 118
Query: 121 ARTRVICGV--THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS-LLSINSVSAAHS-G 176
+ C + D + W D + S L I V
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 178
Query: 177 EYTCVASNTAAQARYSS----KLQVKGNLNRLPPSYTLVFSQ 214
Y C + S +L + ++ P + +
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 123 bits (310), Expect = 4e-35
Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 7/196 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
+ P + A+L+C +T G +KW + G+ + +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES--FAFPFDGL--PEGAR 122
L+I SV+ + Y N + L V VP KI + G
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
+ + G P I W K + V SF+SL+ N V +G Y A
Sbjct: 122 VSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 SNTAAQARYSSKLQVK 198
N + + +L V
Sbjct: 181 KNRFGIDQKTVELDVA 196
Score = 73.6 bits (181), Expect = 3e-16
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+ ++C VT G P ++W + GK + ++ + L I SV+ +
Sbjct: 18 YQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ--LIIASVTDDDA 74
Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
Y A+N ++ L+V+ P
Sbjct: 75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL 108
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 122 bits (308), Expect = 5e-35
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 18 ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSAR 77
+ GE A ++C ++ + WL + + + N+ L I +++
Sbjct: 11 PQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLA--NNNLQILNINKS 67
Query: 78 HSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDP 134
G Y C R D + +IVNVPP I F+ G C + G P
Sbjct: 68 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSP 126
Query: 135 PLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192
I W ++GK + + ++ + S+ + L++ ++ + G Y C A+N A +
Sbjct: 127 EPAISWFRNGKLIEENEKYILKGSN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 193 SKLQV 197
+ LQV
Sbjct: 182 AFLQV 186
Score = 60.9 bits (148), Expect = 9e-12
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 8 VPPKLSPTNP--ERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
VPP +S T GE + C + G I W ++G+ ++ + +
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKG---S 150
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
N+ L + ++ G Y C N ED + L V V
Sbjct: 151 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 125 bits (315), Expect = 1e-34
Identities = 47/226 (20%), Positives = 65/226 (28%), Gaps = 31/226 (13%)
Query: 9 PPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P P E+ G+ L C G W+KDG L S V
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPS-----ERVLVGPQ 61
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG----------- 116
L + + S SG YSC R + + P + +
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121
Query: 117 -------------LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 163
+P R C G+P +I WLK+G+ + L
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
L + SV + G YTCV N R + L V P
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 226
Score = 117 bits (294), Expect = 2e-31
Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 20/208 (9%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
T P ++ + C G+ +I WLK+GR + +
Sbjct: 123 TRPERMDKKL--LAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 179
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF---PFD-GLPEGAR 122
LV++SV GNY+C V N Q L V P + G+
Sbjct: 180 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSD 239
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL------------DSFSSLLSINSV 170
C V D I+WLK + + + + D +LS+++V
Sbjct: 240 VEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVK 198
+ +GEYTC+A N+ + +S+ L V
Sbjct: 299 TFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
Score = 58.9 bits (142), Expect = 2e-10
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 13/117 (11%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
L P + +T +G C + D I+WLK + T
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTP 273
Query: 62 ------------VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
D+ +L + +V+ +G Y+C N + L+V +
Sbjct: 274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 129 bits (326), Expect = 2e-34
Identities = 48/232 (20%), Positives = 74/232 (31%), Gaps = 43/232 (18%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
V S VGER + G P IKW K+G L+++ H
Sbjct: 324 VHEKPFVAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESN------HT 376
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAF--PFDGLP 118
+ +L I VS R +GNY+ + N ++++ Q L+V VPP+I + P D
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQ 436
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-------------------- 158
G + C V PP I W + P +
Sbjct: 437 YGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNK 496
Query: 159 ------------DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
++ ++ +A S Y C A N + V
Sbjct: 497 IEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVT 548
Score = 124 bits (311), Expect = 1e-32
Identities = 38/204 (18%), Positives = 78/204 (38%), Gaps = 17/204 (8%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSI------ 59
+ + + L+VGE+ L C+ + ++ + W + ++
Sbjct: 222 RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281
Query: 60 -THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL- 117
+ + ++ S L ID V+ G Y+C + + + V+ P + + +
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
Query: 118 -PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
G R R+ G PP I+W K+G PL + +L+I VS +G
Sbjct: 342 ATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTI------KAGHVLTIMEVSERDTG 394
Query: 177 EYTCVASNTAAQARYSSKLQVKGN 200
YT + +N ++ + S + +
Sbjct: 395 NYTVILTNPISKEKQSHVVSLVVY 418
Score = 118 bits (297), Expect = 1e-30
Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 28/215 (13%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG------------------ 48
T P+++ P+ E SL C+ + W K G
Sbjct: 548 TRGPEIT-LQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 49 -RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
L A ++ ++ + + S + G+Y C ++ + + V ++
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665
Query: 108 E-SFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
+ + G V C + G+PP I W KD + L + + D +
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKD---GNRN 721
Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
L+I V G YTC A + A+ + ++G
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 114 bits (286), Expect = 3e-29
Identities = 26/207 (12%), Positives = 56/207 (27%), Gaps = 12/207 (5%)
Query: 5 FSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
S P+LS T+ + C G L W + + ++
Sbjct: 27 VSLDLPRLSIQKDILTIKANTTLQITCR---GQRDLDWLWPNNQSGSEQRVEVTECSDGL 83
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL----PEG 120
+ L I V +G Y C R + P I S + + +
Sbjct: 84 FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143
Query: 121 ARTRVICGVTHGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
+ C + + +++ + + + ++ +I S +++G
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS----KKGFTIPSYMISYAGMVF 199
Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPP 206
C A + + V
Sbjct: 200 CEAKINDESYQSIMYIVVVVGYRIYDV 226
Score = 113 bits (283), Expect = 8e-29
Identities = 36/252 (14%), Positives = 68/252 (26%), Gaps = 57/252 (22%)
Query: 8 VPPKLSP---TNPERTLNVGERASLICSITKGDIPLTIKWLKDG---------------- 48
VPP++ +P + G +L C++ P I W
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478
Query: 49 ----------------RYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE 92
++ + + ++ + +A S Y C N V
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538
Query: 93 DTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 152
+V V P+I P E + C + W K G P
Sbjct: 539 GERVISFHVTRGPEITL--QPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHV 595
Query: 153 VNV-------------------SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 193
+ S+ + ++ + + S G+Y C+A + + R+
Sbjct: 596 GELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCV 655
Query: 194 KLQVKGNLNRLP 205
Q+ P
Sbjct: 656 VRQLTVLERVAP 667
Score = 85.2 bits (210), Expect = 4e-19
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
L + V P ++ +T ++GE + C+ + G+ P I W KD L + + +
Sbjct: 659 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK- 716
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
N L I V G Y+C +++ I+ + +
Sbjct: 717 --DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 763
Score = 80.6 bits (198), Expect = 1e-17
Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 7/137 (5%)
Query: 71 IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ S + C + L P++ + ++ C
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL---DLPRLSIQKDILT-IKANTTLQITC--- 53
Query: 131 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
G L W + R V F L+I V +G Y C T +
Sbjct: 54 RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASV 113
Query: 191 YSSKLQVKGNLNRLPPS 207
+Q + S
Sbjct: 114 IYVYVQDYRSPFIASVS 130
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 126 bits (317), Expect = 2e-34
Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 17/192 (8%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + + G+ +L C G+ IKW K + +
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQ-------TSKWLSSEPL 258
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEGARTRVIC 127
L I +V G Y C N+ DT R+I++ P D G+ R C
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD--VITDTEADIGSDLRWSC 316
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
+ G P +RWL+DG+PL+ + + VS L + + SG Y CVA N
Sbjct: 317 VAS-GKPRPAVRWLRDGQPLASQNRIEVSG-----GELRFSKLVLEDSGMYQCVAENKHG 370
Query: 188 QARYSSKLQVKG 199
S++L V+
Sbjct: 371 TVYASAELTVQA 382
Score = 113 bits (284), Expect = 1e-29
Identities = 42/219 (19%), Positives = 66/219 (30%), Gaps = 27/219 (12%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ F + + + G CS L+ +WL + A
Sbjct: 95 LRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS 154
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----------RLIVNVPPKIESFA 111
Q L I A GNYSC + + T+ P I++
Sbjct: 155 -QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKA-K 212
Query: 112 FPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 170
FP D G + C G+P I+W K + ++ S LL I +V
Sbjct: 213 FPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKW-------LSSEPLLHIQNV 264
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
G Y C A N + Y ++ + P +
Sbjct: 265 DFEDEGTYECEAENIKGRDTYQGRIIIHA-----QPDWL 298
Score = 101 bits (254), Expect = 2e-25
Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 10/197 (5%)
Query: 7 TVPPKLSPTNPERTL----NVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ P P TL + E+ +L C + + P T +W +G L V
Sbjct: 2 SYGPVFE-EQPAHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGA 121
+++ + V A+ +G+Y C N ++ L + + + EG
Sbjct: 60 A--GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGW 117
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
C P L+ RWL + P + +L I A+ G Y+C
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY-IAKTEASDLGNYSCF 176
Query: 182 ASNTAAQARYSSKLQVK 198
A++ S +
Sbjct: 177 ATSHIDFITKSVFSKFS 193
Score = 57.2 bits (138), Expect = 9e-10
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P + ++G C + G ++WL+DG+ L + + ++
Sbjct: 293 AQPDWLDVITDTEADIGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVS-----GG 346
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L + SG Y C N L V
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 120 bits (302), Expect = 4e-34
Identities = 36/193 (18%), Positives = 65/193 (33%), Gaps = 9/193 (4%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG--RYLDNSAALSITHVDQYN 66
++ + ++VGE +C + I W + N +S+ D +
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFD-GLPEGARTR 124
S L I + + +G Y C V ++ + + ++ P EG
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA--PTPQEFKEGEDAV 119
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
++C V P TI W G+ + + V L + + L I + G Y C
Sbjct: 120 IVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSN--NYLQIRGIKKTDEGTYRCEGRI 176
Query: 185 TAAQARYSSKLQV 197
A +QV
Sbjct: 177 LARGEINFKDIQV 189
Score = 64.1 bits (156), Expect = 8e-13
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ GE A ++C + +P TI W GR + + + N+
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--NN 155
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
L I + G Y C R + + + + V V
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 119 bits (300), Expect = 9e-34
Identities = 40/197 (20%), Positives = 70/197 (35%), Gaps = 15/197 (7%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIP-LTIKWLKDGRYLDNSAALSITHVDQYN 66
P++ + + +L C++T + W K+G L+ T + N
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGV------ELTATRKNASN 55
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
I+ A SG Y C V + V+ + V P I + EG +
Sbjct: 56 MEYRINKPRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITG-HKRSENKNEGQDAMMY 113
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
C G P W K + + + ++++ L +N GEY C
Sbjct: 114 CKSV-GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECN 172
Query: 182 ASNTAAQARYSSKLQVK 198
A+N+ A S+ L+V+
Sbjct: 173 ATNSIGSASVSTVLRVR 189
Score = 59.1 bits (143), Expect = 5e-11
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALS-----ITHV 62
P ++ N G+ A + C G W K + + S I +
Sbjct: 91 AAPDITGHKRSENKNEGQDAMMYCKSV-GYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
+ Y + +++ G Y C N + + L V V
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 122 bits (308), Expect = 9e-34
Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 13/200 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P + L C + I W KD R +
Sbjct: 6 TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GIC 61
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP--------E 119
L+I S + +G Y +++ +D +L+ ++ L
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST 121
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
++ VT+ L + W +G + V L IN + G+Y
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ-INEPTPNDKGKYV 180
Query: 180 CVASNTAAQARYSSKLQVKG 199
+ + + L +
Sbjct: 181 MELFDGKTGHQKTVDLSGQA 200
Score = 121 bits (304), Expect = 4e-33
Identities = 40/210 (19%), Positives = 65/210 (30%), Gaps = 22/210 (10%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
+ + E L +T L + W +G + S + +
Sbjct: 107 KKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW- 165
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP--------------F 114
L I+ + G Y + + + L + +
Sbjct: 166 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 225
Query: 115 DGLP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 168
GLP EG + C V GDPP + WLK+ K L+ N+ ++ +IN
Sbjct: 226 GGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN 284
Query: 169 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
VS A SG+Y V N + V
Sbjct: 285 GVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 76.5 bits (188), Expect = 1e-16
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
L T+ G+ +L C++ GD P + WLK+ + L + ++ +
Sbjct: 221 RARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
I+ VS SG Y V+N +T + V +P
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316
Score = 74.2 bits (182), Expect = 1e-15
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 5/99 (5%)
Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 160
P + + + C V + I W KD + +S D
Sbjct: 4 PFTGPHFVEY--LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKD 58
Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
L I S +G Y + + + + KL +
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 97
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 122 bits (307), Expect = 1e-33
Identities = 41/197 (20%), Positives = 64/197 (32%), Gaps = 7/197 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLD-NSAALSITHVDQYN 66
+ P + A+L+C +T G +KW + G+ + + I
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG----LPEGAR 122
L+I SV+ + Y N + L V VP KI G
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
+ + G P I W K + V SF+SL+ N V +G Y A
Sbjct: 122 VSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 183 SNTAAQARYSSKLQVKG 199
N + + +L V
Sbjct: 181 KNRFGIDQKTVELDVAD 197
Score = 74.4 bits (183), Expect = 5e-16
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
+P L GE S+ + G I W K +DN+ + +
Sbjct: 103 HLPKTLEGMGA-VHALRGEVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFT 160
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
S++ + V + +G Y +N D + L V P
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 118 bits (298), Expect = 2e-33
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 12/199 (6%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
+T P + + G A+ I+ G + W +DG+ + S +
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 66 N-SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV---NVPPKIESFAFPFDGL--PE 119
+ L I +V+ +SG YS N + T L+V PP F + +
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN---FVQRLQSMTVRQ 117
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
G++ R+ VT G P +++ +DG + +S SLL I SG Y+
Sbjct: 118 GSQVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL-IAEAYPEDSGTYS 175
Query: 180 CVASNTAAQARYSSKLQVK 198
A+N+ +A +++L V+
Sbjct: 176 VNATNSVGRATSTAELLVQ 194
Score = 71.7 bits (176), Expect = 2e-15
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAHSG 176
EG+ ++ G P + W +DG+ +S V +S D + L I +V+ A+SG
Sbjct: 19 EGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLT-IPAVTKANSG 76
Query: 177 EYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
Y+ A+N + QA +++L VK PP+
Sbjct: 77 RYSLKATNGSGQATSTAELLVKA--ETAPPN 105
Score = 61.7 bits (150), Expect = 6e-12
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
V T PP T+ G + L +T G +K+ +DG + +S I+
Sbjct: 97 VKAETAPPNFVQRLQSMTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQE 155
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
S L+I SG YS N V T L+V
Sbjct: 156 GDLYS-LLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 122 bits (306), Expect = 2e-33
Identities = 34/207 (16%), Positives = 57/207 (27%), Gaps = 20/207 (9%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP P E + L C I I W K+ + L T Q
Sbjct: 127 KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDG----TKYSQSGQ 182
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI---ESFAFPFDGLP-----E 119
L+I + SG Y C V + + + F P
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTI 242
Query: 120 GARTRVIC---GVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSA 172
G + C + + I W + + + S + L +V+
Sbjct: 243 GEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTE 302
Query: 173 AHSGE-YTCVASNTAAQARYSSKLQVK 198
+ G YTC N ++ + ++
Sbjct: 303 EYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 116 bits (291), Expect = 3e-31
Identities = 35/214 (16%), Positives = 63/214 (29%), Gaps = 21/214 (9%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDI--------PLTIKWLKDGRYLDNSAALSIT 60
P + +GE S C + + + W K G+
Sbjct: 29 PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGK------TRRPL 82
Query: 61 HVDQYNSMLVIDSVSARHSGN-YSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLP 118
+ N L I + ++ S Y CTV + Q R + PP + G
Sbjct: 83 NRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE-LGTH 141
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
+ + CG+ + I W K+ + L ++ + L I++ SG Y
Sbjct: 142 DKYGIDLYCGILYAKHYNNITWYKNNQEL----IIDGTKYSQSGQNLIIHNPELEDSGRY 197
Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVF 212
C + + + L +P
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFK 231
Score = 56.4 bits (135), Expect = 2e-09
Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNS----A 55
VI S +P+ + +GE A++ C+ + I W ++
Sbjct: 222 VIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVY 281
Query: 56 ALSITHVDQYNSMLVIDSVSARHSGN-YSCTVRNMVAEDTQVQRLIV 101
++ + + L ++V+ + GN Y+C N + T +++
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 120 bits (303), Expect = 3e-33
Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 16/203 (7%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + P+ PE + GE +L C +++W + S
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWT------LDPESPGST 52
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
L + + +++G Y CT + L V P + + EG + C
Sbjct: 53 LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCL 112
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
+T ++ +++G R V I S Y C +
Sbjct: 113 ITDPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMV-NGR 168
Query: 189 ARYSSKLQVK-GNLNRLPPSYTL 210
S+ + +K ++ PP L
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKL 191
Score = 114 bits (286), Expect = 9e-31
Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 11/202 (5%)
Query: 4 IFSTVPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
++ P + T+ G+ A L C IT + ++ +++G +
Sbjct: 83 LYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR---KTVYF 139
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----RLIVNVPPKIESFAFPFDGL 117
+I S Y C E T + PP+I+
Sbjct: 140 FSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLV-R 198
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSG 176
G +++C T+ + + + L + + LS+N+V +G
Sbjct: 199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAG 258
Query: 177 EYTCVASNTAAQARYSSKLQVK 198
Y+CVASN + QV
Sbjct: 259 IYSCVASNDVGTRTATMNFQVV 280
Score = 75.4 bits (185), Expect = 2e-16
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYN 66
PP++ + GE A ++CS T ++ + + L+ + +
Sbjct: 185 EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV 244
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
L +++V + +G YSC N V T V
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 118 bits (296), Expect = 5e-33
Identities = 23/198 (11%), Positives = 57/198 (28%), Gaps = 21/198 (10%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM-LVIDSVSARH 78
+ + K + ++ + + + + + + ++ +
Sbjct: 13 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 72
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIE----------------SFAFPFDG-LPEGA 121
G Y+ +++ A + L+ +V K++ F +
Sbjct: 73 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGEC 132
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
+ C V + I W KD + +S D L I S +G Y +
Sbjct: 133 NVLLKCKVANIKKETHIVWYKDEREISVDEKH---DFKDGICTLLITEFSKKDAGIYEVI 189
Query: 182 ASNTAAQARYSSKLQVKG 199
+ + + KL +
Sbjct: 190 LKDDRGKDKSRLKLVDEA 207
Score = 59.6 bits (144), Expect = 4e-11
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
+ L C + I W KD R + L+I S
Sbjct: 124 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF---KDGICTLLITEFSK 180
Query: 77 RHSGNYSCTVRNMVAEDTQVQRLIV 101
+ +G Y +++ +D +L+
Sbjct: 181 KDAGIYEVILKDDRGKDKSRLKLVD 205
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 119 bits (301), Expect = 8e-33
Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 13/214 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP+ ++ G AS +C T GD + W K G+ +++ +I + +
Sbjct: 5 EPPRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68 MLVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
+L I + + R Y C +N V E T +L V ++ S D P
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-VSDLDSFSSLLSINSVSAAHSGEYT 179
++C + G+P I W KD P+ P + L S + L I S G+Y
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLRSGA--LQIESSEETDQGKYE 180
Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFS 213
CVA+N+ A RYSS + + + P ++++
Sbjct: 181 CVATNS-AGVRYSSPANLYVRVQNVAPRFSILPM 213
Score = 116 bits (293), Expect = 1e-31
Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 13/196 (6%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
+ P + + + A+++C+ + G+ I W KD +D SA+ + +
Sbjct: 106 SGFPNIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGRIKQLR-S 163
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFD--GLPEGART 123
L I+S G Y C N L V V F+ + G
Sbjct: 164 GALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNV 223
Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
+ C G P ++W++ + L+P + V + S YTCVA
Sbjct: 224 NITCVAV-GSPMPYVKWMQGAEDLTPEDDMPVGRN-------VLELTDVKDSANYTCVAM 275
Query: 184 NTAAQARYSSKLQVKG 199
++ +++ VK
Sbjct: 276 SSLGVIEAVAQITVKS 291
Score = 71.4 bits (175), Expect = 7e-15
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 101 VNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
PP+ P D G +C T GDP + W K GK ++ + + +
Sbjct: 3 GEEPPRFIKE--PKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDE 59
Query: 160 SFSSLLSINSV-SAAHSGEYTCVASNTAAQARYSSKLQVK 198
S ++L I + + Y CVA N+ + +KL V
Sbjct: 60 SAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99
Score = 69.5 bits (170), Expect = 4e-14
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
V V P+ S + G ++ C G +KW++ L + +
Sbjct: 199 VRVQNVAPRFSILPMSHEIMPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMPV--- 254
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
V++ + S NY+C + + V ++ V PK
Sbjct: 255 ----GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 117 bits (294), Expect = 9e-33
Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 15/204 (7%)
Query: 5 FSTVPPKLSPTNPERTLNVGERASLICSITKGDI-PLTIKWLKDGRYLDNSAALSITHVD 63
+ P PE + G+ L+C L+ +WL + + + V
Sbjct: 4 SGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR-FVS 62
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
Q N L I +V A GNYSC V + + + + P+ + +P D + +
Sbjct: 63 QTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122
Query: 123 TRVICGVT-------HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+ G G+P IRW K +P+ +++ + ++L I ++
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPST-----AEISTSGAVLKIFNIQLEDE 177
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G Y C A N + ++ +++ V+
Sbjct: 178 GIYECEAENIRGKDKHQARIYVQA 201
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 117 bits (294), Expect = 1e-32
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 14/203 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP+ + T ++T G AS IC T GD I W K G+ + N I D S
Sbjct: 5 TPPRFTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGS 63
Query: 68 MLVIDSV-SARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
+L I + + R Y C N V E + RL V +I D P
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFSSLLSINSVSAAHSGE 177
++C + G+P I W KD P+ + +S +L I + G+
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQ-IEQSEESDQGK 181
Query: 178 YTCVASNTAAQARYSS-KLQVKG 199
Y CVA+N+A + L V+G
Sbjct: 182 YECVATNSAGTRYSAPANLYVRG 204
Score = 72.2 bits (177), Expect = 1e-15
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 101 VNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
PP+ P D G IC T GDP I W K GK +S + + D
Sbjct: 3 GETPPRFT--RTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDD 59
Query: 160 SFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 198
S+L I + Y CVASN + S++L V
Sbjct: 60 GSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 117 bits (293), Expect = 1e-32
Identities = 47/222 (21%), Positives = 75/222 (33%), Gaps = 40/222 (18%)
Query: 15 TNPERTLNV--GERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITH-------- 61
T PE+ + GE A L C T + PL I+WL + I +
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 62 ---------------VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
V ++ + + ++ G Y C V+ + L V V P
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPS 123
Query: 107 IESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 165
DG G ++ C G PL W K + P + S ++
Sbjct: 124 GTRC--FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA---EMTSPVI 178
Query: 166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
S+ + S+ +SG Y+C N + +L V +PPS
Sbjct: 179 SVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV------VPPS 214
Score = 75.1 bits (184), Expect = 1e-16
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
V P + + + +G L C +G +PL +W K + + +
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP---TPWLAEMTSP 176
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
++ + + S+ +SG YSCTV+N V D + RL V VPP
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV-VPP 213
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 117 bits (295), Expect = 2e-32
Identities = 51/210 (24%), Positives = 70/210 (33%), Gaps = 23/210 (10%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
T P ++ + C G+ +I WLK+GR + +
Sbjct: 15 TRPERMDKKL--LAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQ 71
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
LV++SV GNY+C V N Q L V GLP G
Sbjct: 72 WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQTAVLG 129
Query: 121 ARTRVICGVTHGDPPLTIRWLK-----------DGKPLSPRFPVNVSDLDSFSSLLSINS 169
+ C V D I+WLK DG P +S+ L + +
Sbjct: 130 SDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLAN 188
Query: 170 VSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
VS GEY C A+N A + L V G
Sbjct: 189 VSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 76.9 bits (189), Expect = 3e-17
Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
P R C G+P +I WLK+G+ + L L + SV + G
Sbjct: 28 PAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPP 206
YTCV N R + L V P
Sbjct: 87 YTCVVENKFGSIRQTYTLDVLERSPHRPI 115
Score = 66.5 bits (162), Expect = 2e-13
Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 17/141 (12%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-----------DGRY 50
L P + +T +G C + D I+WLK DG
Sbjct: 107 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVGPDGTP 165
Query: 51 LDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
I+ + + L + +VS R G Y C N + + L V+ P E
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE- 224
Query: 111 AFPFDGLPEGARTRVICGVTH 131
+ + V H
Sbjct: 225 ----ELVEADEAGSVHHHHHH 241
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 119 bits (299), Expect = 2e-32
Identities = 23/212 (10%), Positives = 58/212 (27%), Gaps = 25/212 (11%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV-DQYN 66
P + + + K + ++ + + + + +
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 165
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP-------- 118
+ ++ + G Y+ +++ A + L+ +V K++ A
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 119 ---------EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSI 167
+ C V + I W KD + + + D L I
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-----DFKDGICTLLI 280
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
S +G Y + + + + KL +
Sbjct: 281 TEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312
Score = 117 bits (294), Expect = 1e-31
Identities = 23/213 (10%), Positives = 57/213 (26%), Gaps = 17/213 (7%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ P + + C W KD ++S L + +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDK--MTPKSEFSWSKDYVSTEDSPRLEVESKG-NKT 58
Query: 68 MLVIDSVSARHSGNYSCTVRNMV------AEDTQVQRLIVNVPPKIESFAFPFDGLP--- 118
+ + G YSC V + D + + ++ + + + P
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118
Query: 119 --EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAH 174
E + R + ++ + K + P++ +++ + + +
Sbjct: 119 ILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF-MEKLQDED 177
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
G YT + A + L +
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 210
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 120 bits (302), Expect = 3e-32
Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 17/195 (8%)
Query: 6 STVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHVD 63
PK+ PE G L C G+ TI W + DG+ + A
Sbjct: 201 GEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARKA-----RRH 254
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEGAR 122
+ N +L I + +G+Y C N ++ +L P D +
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ--IINDIHVAMEES 312
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
C G P T RWLK+G PL R + + L+I V+ + +G Y CVA
Sbjct: 313 VFWECKAN-GRPKPTYRWLKNGDPLLTRDRIQIEQ-----GTLNITIVNLSDAGMYQCVA 366
Query: 183 SNTAAQARYSSKLQV 197
N S++L V
Sbjct: 367 ENKHGVIFSSAELSV 381
Score = 111 bits (280), Expect = 4e-29
Identities = 42/218 (19%), Positives = 78/218 (35%), Gaps = 25/218 (11%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ F+ + + T ++ G+ L+C L+ W+ + + V
Sbjct: 96 LQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQD---NRRFV 152
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV---QRLIVNVPPKIESFAFPFDGLP- 118
Q L I V GNY+C V N V + LI+ + + +
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 119 ------EGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVS 171
+G ++ C G+P TI W + DGKP++ + + + +L I +
Sbjct: 213 ETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARK-----ARRHKSNGILEIPNFQ 266
Query: 172 AAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
+G Y CVA N+ + +L P++
Sbjct: 267 QEDAGSYECVAENSRGKNVAKGQLTFYA-----QPNWV 299
Score = 104 bits (261), Expect = 2e-26
Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 12/197 (6%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
++ L C + KG+ I+W +G +D + VD S+L+ + + +G Y
Sbjct: 23 EKKVKLSCEV-KGNPKPHIRWKLNGTDVDIGMDFRYSVVD--GSLLINNPNKTQDAGTYQ 79
Query: 84 CTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK 142
C N ++ +L ++ + G ++CG L+ W+
Sbjct: 80 CIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF 139
Query: 143 DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-----KLQV 197
+ P VS L I V + G YTCV +NT + L+
Sbjct: 140 NEYPSYQDNRRFVSQET---GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRN 196
Query: 198 KGNLNRLPPSYTLVFSQ 214
G + P + F +
Sbjct: 197 DGVMGEYEPKIEVQFPE 213
Score = 56.4 bits (136), Expect = 2e-09
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 104 PPKI----ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
P FP D E + ++ C V G+P IRW +G + S +D
Sbjct: 5 GPVFVQEPSHVMFPLDS--EEKKVKLSCEV-KGNPKPHIRWKLNGTDVDIGMDFRYSVVD 61
Query: 160 SFSSLLSINSVSAAHSGEYTCVASNTA 186
SLL N +G Y C+A+N+
Sbjct: 62 --GSLLINNPNKTQDAGTYQCIATNSF 86
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 118 bits (296), Expect = 4e-32
Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 11/194 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
P+ + + L C T G P I W D + N++ +
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 67 -SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ--RLIVNVPPKIESFAFPFDGLPEGART 123
S+ ++ S N +C V + E Q+ L V PP++ + +
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEA 235
Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
+ C P W PL P + L I V + C +
Sbjct: 236 TLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-------GAQLLIRPVDKPINTTLICNVT 288
Query: 184 NTAAQARYSSKLQV 197
N + +QV
Sbjct: 289 NALGARQAELTVQV 302
Score = 104 bits (261), Expect = 4e-27
Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 27/207 (13%)
Query: 17 PERTLNVGERASLICSITKGDIPLT----IKWLKDGRYLDNSAALSITHV---------- 62
+ +G+ +L C + ++ +T + W + G +
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67
Query: 63 -------DQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQRLIVNVPPKIESFAFPF 114
+ N+ L + + GNY+C + L V P+ +
Sbjct: 68 VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127
Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSA 172
L C T G PP I W D + + P +S + +SL + S
Sbjct: 128 Q-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186
Query: 173 AHSGEYTCVASNTAAQA--RYSSKLQV 197
TC + + + + L V
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLTV 213
Score = 40.1 bits (93), Expect = 3e-04
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 30/120 (25%)
Query: 100 IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT----IRWLKDGKPLS-----PR 150
+V P ++ F G + C + + +T + W + G+ S
Sbjct: 3 VVQAPTQVPGF--------LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54
Query: 151 FPVNVSDLDSFSSL------------LSINSVSAAHSGEYTCVASNTAAQARYSS-KLQV 197
+ S+ + L + + G YTC+ +R L+V
Sbjct: 55 QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 116 bits (291), Expect = 5e-32
Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 22/208 (10%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
T K+ + C G+ T++WLK+G+ + V +
Sbjct: 19 TNTEKMEKRL--HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 75
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP------EG 120
L+++SV GNY+C V N L V + GLP G
Sbjct: 76 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR--PILQAGLPANASTVVG 133
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----------DSFSSLLSINSV 170
+C V D I+W+K + ++ + S + +L++ +V
Sbjct: 134 GDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVK 198
+ A +GEY C SN QA S+ L V
Sbjct: 193 TEADAGEYICKVSNYIGQANQSAWLTVL 220
Score = 81.9 bits (202), Expect = 4e-19
Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 4/123 (3%)
Query: 90 VAEDTQVQRLIVNVPPKIESFAFP---FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP 146
+AED + P + +P + C G+P T+RWLK+GK
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKE 59
Query: 147 LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
+ + + L + SV + G YTCV N ++ L V P
Sbjct: 60 FKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI 119
Query: 207 SYT 209
Sbjct: 120 LQA 122
Score = 59.1 bits (143), Expect = 9e-11
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 6 STVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
S P L P + VG +C + D I+W+K + +
Sbjct: 114 SRHRPILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLK 172
Query: 65 ----------YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
+L + +V+ +G Y C V N + + Q L V +
Sbjct: 173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 117 bits (294), Expect = 1e-31
Identities = 38/226 (16%), Positives = 64/226 (28%), Gaps = 29/226 (12%)
Query: 7 TVPPKLSPTNPER-----------TLNVGERASLICSITK------GDIPLTIKWLKDGR 49
T+ P GE +L C + + W K+
Sbjct: 5 TLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDS 64
Query: 50 YLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
+ + L + SG Y CT RN D L V
Sbjct: 65 ARTVPGEEET-RMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFL 123
Query: 110 FAFPFD-GLPEGARTRVIC----GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
+ L ++C T + I+W KD L +S ++
Sbjct: 124 PFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--TTH 181
Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSS----KLQVKGNLNRLPP 206
L ++ V+ +G Y CV + +Y+ +L++K P
Sbjct: 182 LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIP 227
Score = 103 bits (259), Expect = 2e-26
Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 35/226 (15%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICS----ITKGDIPLTIKWLKDGRYLDNSAAL 57
L +F L + + L + L+C T+ + I+W KD LD
Sbjct: 113 LRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN-- 170
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV---------PPKIE 108
+ + L++ V+ +G Y C + + + P I
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230
Query: 109 SFAFPFD--GLPEGARTRVICGVTH--GDPPLTIRWLKDGKPL------------SPRFP 152
S P G+R + C V G P T+ W PR
Sbjct: 231 S---PLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQE 287
Query: 153 VNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV 197
+ ++ + L + V+ ++ CV NT + + ++
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 112 bits (282), Expect = 4e-31
Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 27/209 (12%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ---- 64
T G +L C + P + WL+DG+ L+ + +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 65 ----YNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDG-LP 118
S L I S+ +G Y C V +Q + + P P D +
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE--EPEDRTVA 119
Query: 119 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
+ C G P P+ + WL+D PL+ S++ +
Sbjct: 120 ANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQ--------RSLHVPGLNKTSS 170
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPP 206
++C A N + + LP
Sbjct: 171 FSCEAHNAKGVTTSRTAT-----ITVLPQ 194
Score = 56.1 bits (135), Expect = 6e-10
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGD-IPLTIKWLKDGRYLDNSAALSITHVDQYN 66
P +RT+ +L C G P+ + WL+D L +
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQRS---- 159
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
L + ++ + ++SC N T I +P +
Sbjct: 160 --LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVLPQQ 195
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 114 bits (287), Expect = 6e-31
Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 18/205 (8%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P + P+ PE + G +L C +++W + D +S
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNG-----SVEWDGPPS------PHWTLYSDGSSS 51
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
+L ++ + +++G Y CT + L V P + + + E + C
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPC 111
Query: 128 GVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
+T + ++ G+PL + S +I+ S +Y C A
Sbjct: 112 LLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG----FTIHRAKFIQSQDYQCSALM-G 166
Query: 187 AQARYSSKLQVK-GNLNRLPPSYTL 210
+ S +++K + PP+ TL
Sbjct: 167 GRKVMSISIRLKVQKVIPGPPALTL 191
Score = 110 bits (276), Expect = 3e-29
Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 13/203 (6%)
Query: 4 IFSTVPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITH 61
++ P + + + + A L C +T + + ++ GR L S +
Sbjct: 83 LYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP 142
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-----RLIVNVPPKIESFAFPFDG 116
I S +Y C+ + + + ++ PP +
Sbjct: 143 ----WHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELV- 197
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSINSVSAAHS 175
G +++C + D + + L+ P+ ++ L+++ V H+
Sbjct: 198 RIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHA 257
Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
G Y+CVASN + S +V
Sbjct: 258 GNYSCVASNVQGKHSTSMFFRVV 280
Score = 78.9 bits (194), Expect = 1e-17
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 1/101 (0%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH-VDQYN 66
PP L+ E GE A ++CS + D+ + + L + Q
Sbjct: 185 GPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKV 244
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
L +D V +H+GNYSC N+ + + V
Sbjct: 245 LTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 111 bits (280), Expect = 9e-31
Identities = 29/191 (15%), Positives = 65/191 (34%), Gaps = 9/191 (4%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
+++ + + L+VGE C+ G+ + G + ++ + + + S
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQGEKIISTQRVVV-QKEGVRSR 59
Query: 69 LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVI 126
L I + + +G Y C + + L + +G V+
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV--VSPQEFKQGEDAEVV 117
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C V+ P + WL + ++ + L + + L I +++ + G Y C A
Sbjct: 118 CRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLAN--NNLQILNINKSDEGIYRCEGRVEA 174
Query: 187 AQARYSSKLQV 197
+ V
Sbjct: 175 RGEIDFRDIIV 185
Score = 63.3 bits (154), Expect = 2e-12
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 3/81 (3%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
G C G+P + G+ + V V S L I + + +G Y
Sbjct: 16 VGESKFFTCTAI-GEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT-IYNANIEDAGIY 73
Query: 179 TCVASNTAAQARYSS-KLQVK 198
C A++ Q + ++ L++
Sbjct: 74 RCQATDAKGQTQEATVVLEIY 94
Score = 62.5 bits (152), Expect = 3e-12
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ GE A ++C ++ + WL + + + N+
Sbjct: 95 QKLTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLA--NN 151
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
L I +++ G Y C R + + +IV V
Sbjct: 152 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 113 bits (283), Expect = 1e-30
Identities = 39/205 (19%), Positives = 59/205 (28%), Gaps = 26/205 (12%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ L R GE +L C K + + + ++G+
Sbjct: 76 IQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-------- 127
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF-AFPFDGLPEGA 121
+NS L I + H+G Y C+ + + V A L EG
Sbjct: 128 -HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGN 186
Query: 122 RTRVICGVT----HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
+ C L + K L R + SS I + SG
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---------NTSSEYQILTARREDSGL 237
Query: 178 YTCVASNTAAQARYSS---KLQVKG 199
Y C A+ S +LQV G
Sbjct: 238 YWCEAATEDGNVLKRSPELELQVLG 262
Score = 107 bits (269), Expect = 1e-28
Identities = 30/189 (15%), Positives = 55/189 (29%), Gaps = 24/189 (12%)
Query: 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
++ P ++ E +L C + + +W +G S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-----------TPSY 50
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
I S S SG Y C D +L ++ + EG + C
Sbjct: 51 RITSASVNDSGEYRCQRGLSGRSDPI--QLEIHRGWLLLQV--SSRVFTEGEPLALRCHA 106
Query: 130 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189
+ + ++GK ++S L+I + +H+G Y C
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFF---------HWNSNLTILKTNISHNGTYHCSGMGKHRYT 157
Query: 190 RYSSKLQVK 198
+ VK
Sbjct: 158 SAGISVTVK 166
Score = 46.1 bits (109), Expect = 3e-06
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSAAL 57
+ + P + + L G +L C + + L + + L
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNT- 221
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90
+S I + SG Y C
Sbjct: 222 --------SSEYQILTARREDSGLYWCEAATED 246
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 115 bits (290), Expect = 2e-30
Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 12/198 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH------V 62
P + N T + +L+C G+ I W + +
Sbjct: 2 PHIIQLKN--ETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
+S L I V SG Y C + + + L + PK S + EG
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYY-SWEGNP 117
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCV 181
+ C V +PP +I W +D L + N+ +L I S G Y C
Sbjct: 118 INISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCT 176
Query: 182 ASNTAAQARYSSKLQVKG 199
A+N L +
Sbjct: 177 ATNHIGTRFQEYILALAD 194
Score = 70.2 bits (172), Expect = 3e-14
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI-THVDQYN 66
PK G ++ C + + P +I W +D L ++ T+
Sbjct: 99 YAPKFISNQTIYYSWEGNPINISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK 157
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+L I S G Y+CT N + Q L + P
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 110 bits (276), Expect = 4e-30
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 13/193 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P ++ V E A+ +C++ I W ++ + + + + +
Sbjct: 7 APVITTPLETVDALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFD--TRYSIRENGQL 63
Query: 69 LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFD-GLPEGARTRVI 126
L I SV G Y CT N V L V + PKI P + + EG + +
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP--PINVKIIEGLKAVLP 121
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C G+P ++ W+K L + V + S L I++V +G+Y CVA N+
Sbjct: 122 CTTM-GNPKPSVSWIKGDSALRENSRIAVLE----SGSLRIHNVQKEDAGQYRCVAKNSL 176
Query: 187 AQARYSS-KLQVK 198
A KL+V+
Sbjct: 177 GTAYSKLVKLEVE 189
Score = 57.4 bits (139), Expect = 2e-10
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ PK++ + G +A L C+ G+ ++ W+K L ++ +++ +
Sbjct: 99 MKPKITRPPINVKIIEGLKAVLPCTTM-GNPKPSVSWIKGDSALRENSRIAVLE----SG 153
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVP 104
L I +V +G Y C +N + +++ +L V V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 109 bits (273), Expect = 6e-30
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 21/196 (10%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ-YNS 67
KL + T++ G+ L CS+ G I+W+KDG + N L I +Q +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60
Query: 68 MLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIESFAFPFD-GLPEGARTRV 125
L + SV +G Y C V + E +Q L V P P D +P A ++
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTV--EPKDLAVPPNAPFQL 118
Query: 126 ICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
C G P P+TI W + + P S +N S ++C A N
Sbjct: 119 SCEA-VGPPEPVTIVWWRGTTKIGGPAP----------SPSVLNVTGVTQSTMFSCEAHN 167
Query: 185 TA--AQARYSSKLQVK 198
A +R ++ + ++
Sbjct: 168 LKGLASSR-TATVHLQ 182
Score = 64.8 bits (158), Expect = 4e-13
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-FSSLLSINSVSAAHSGE 177
+G ++ C V G I+W+KDG + + + + + LS+ SV + +G
Sbjct: 16 QGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74
Query: 178 YTCVASNTA-AQARYSSKLQVKGNLNRLPPSYT 209
Y C + + L V+G P +T
Sbjct: 75 YWCQVEDGGETEISQPVWLTVEG-----VPFFT 102
Score = 52.9 bits (127), Expect = 7e-09
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 11/95 (11%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P + + + L C P+TI W + + A S
Sbjct: 97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA----------PS 146
Query: 68 MLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIV 101
V++ S +SC N+ ++ + +
Sbjct: 147 PSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 108 bits (272), Expect = 8e-30
Identities = 29/194 (14%), Positives = 53/194 (27%), Gaps = 25/194 (12%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
+ L P + + +L C + +I+W +G +
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------- 49
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
+ SG Y+C D L V + P EG +
Sbjct: 50 TQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHLTVLFEWLVLQ--TPHLEFQEGETIML 105
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C P + + + ++GK SI + +HSG+Y C +
Sbjct: 106 RCHSWKDKPLVKVTFFQNGKSQKFS---------HLDPTFSIPQANHSHSGDYHCTGNIG 156
Query: 186 AAQARYSS-KLQVK 198
+ V+
Sbjct: 157 YTLFSSKPVTITVQ 170
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 109 bits (274), Expect = 1e-29
Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 37/194 (19%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
K++ + + G+ L C T G + +W K + + N S
Sbjct: 17 RGSKITVNPESKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIPNGN----------TS 65
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDG---------- 116
L+ ++V + +G Y C V N + +L V P+ +
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 117 ----LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 172
L G+ + C G P +W K+ PL+ L + V
Sbjct: 126 TSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTH----------ETKKLYMVPYVDL 174
Query: 173 AHSGEYTCVASNTA 186
H G Y C N
Sbjct: 175 EHQGTYWCHVYNDR 188
Score = 63.0 bits (153), Expect = 3e-12
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 15/103 (14%)
Query: 98 RLIVNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS 156
+V KI P + G ++ C T G P + +W K K +
Sbjct: 12 SGLVPRGSKITVN--PESKAVLAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP-------- 60
Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK 198
+ +S L N+V +G Y C +N S+L V
Sbjct: 61 --NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVC 101
Score = 62.2 bits (151), Expect = 5e-12
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S ++ + L G L C G +W K+ L +
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHET---------- 163
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKI 107
+ ++ V H G Y C V N ++D++ +I++ +
Sbjct: 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 206
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 112 bits (280), Expect = 2e-29
Identities = 24/197 (12%), Positives = 51/197 (25%), Gaps = 12/197 (6%)
Query: 8 VPPKLSPTNPERTLNV-----GERASLICSITKGDIPLTIKWLKDGRYLDNSAAL-SITH 61
P + L + C+ G P + W + + +
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNG 188
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGA 121
S + H + +C V + + L V P++ F + +
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
++ C P W L +L ++ + +G Y C
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLPKGVEA------QNRTLFFKGPINYSLAGTYICE 302
Query: 182 ASNTAAQARYSSKLQVK 198
A+N ++ +
Sbjct: 303 ATNPIGTRSGQVEVNIT 319
Score = 98.7 bits (245), Expect = 2e-24
Identities = 32/229 (13%), Positives = 58/229 (25%), Gaps = 31/229 (13%)
Query: 9 PPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAA--------- 56
P ++ N +G L CS + W K + A
Sbjct: 14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73
Query: 57 --------LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKI 107
+ + + + + G Y C + + Q L V P
Sbjct: 74 VLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN 133
Query: 108 ESFAFPFDGLP----EGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFS 162
+ C +G PP + W K + + N + +
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVI 193
Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
S + AH C+ + + + S L V+ P T+
Sbjct: 194 SRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-----EPEVTIE 237
Score = 59.8 bits (144), Expect = 9e-11
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 7/104 (6%)
Query: 7 TVPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
P+++ + L C W +L Q
Sbjct: 229 QYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG------SLPKGVEAQN 282
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
++ ++ +G Y C N + + + + +E
Sbjct: 283 RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAALEH 326
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 110 bits (277), Expect = 2e-29
Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 17/206 (8%)
Query: 4 IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSITHV 62
+F P KL A + C +T + ++ DG+ L
Sbjct: 86 VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVS-QYSLIECDGKSLPTDLTFV---P 141
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIV----NVPPKIESFAFPFDGL 117
+ + + + A H C + + L V P + L
Sbjct: 142 NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSH-LL 200
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS------FSSLLSINSVS 171
+G V+C + + WLK V + L+I+S
Sbjct: 201 KKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSAR 260
Query: 172 AAHSGEYTCVASNTAAQARYSSKLQV 197
SG + C A+NT A ++ L+V
Sbjct: 261 VDDSGVFMCYANNTFGSANVTTTLKV 286
Score = 94.0 bits (233), Expect = 4e-23
Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 23/191 (12%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
PP + P E + G+ SL C ++W + V+ +
Sbjct: 12 PPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFN--------EMVENKKNE 58
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
+ + A +G Y+C+ N + V V P K+ P E + V C
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTSSIYV---FVRDPAKLFLVGLPLF-GKEDSDALVRCP 114
Query: 129 VTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
+T ++ DGK L + + + N A H C A
Sbjct: 115 LT-DPQVSQYSLIECDGKSLPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQR-DG 169
Query: 188 QARYSSKLQVK 198
+S K +K
Sbjct: 170 TWLHSDKFTLK 180
Score = 43.6 bits (102), Expect = 2e-05
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 15/108 (13%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 163
PP I + G + C +RW +++ +
Sbjct: 12 PPSIHPAQSELI-VEAGDTLSLTC---IDPDF--VRWTFKTYFNE--------MVENKKN 57
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
A +G YTC SN + Y ++ L +
Sbjct: 58 EWIQEKAEATRTGTYTCSNSNGLTSSIYVF-VRDPAKLFLVGLPLFGK 104
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 109 bits (272), Expect = 2e-28
Identities = 39/195 (20%), Positives = 56/195 (28%), Gaps = 17/195 (8%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
E C + + TI W KD S + + Q+ L SG+Y
Sbjct: 20 NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASRIHQHKEKLWFVPAKVEDSGHYY 78
Query: 84 CTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG---LPEGARTRVICGVTH-----GDPP 135
C VRN + LP ++C +
Sbjct: 79 CVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL 138
Query: 136 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-- 193
++W KD KPL D L + +V+ H G YTC AS T +Y
Sbjct: 139 PKLQWYKDCKPLLLDNIHFSGVKDR----LIVMNVAEKHRGNYTCHASYTYLGKQYPITR 194
Query: 194 --KLQVKGNLNRLPP 206
+ P
Sbjct: 195 VIEFITLEENKPTRP 209
Score = 101 bits (253), Expect = 8e-26
Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 33/224 (14%)
Query: 2 LVIFSTVPPKLSPTNP--ERTLNVGERASLICSIT-----KGDIPLTIKWLKDGRYLDNS 54
P ++ L V L+C + + ++W KD + L
Sbjct: 94 AKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLD 153
Query: 55 AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT---------QVQRLIVNVPP 105
H L++ +V+ +H GNY+C P
Sbjct: 154 N----IHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209
Query: 106 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-------- 157
I S A + G++ ++IC VT G W +G + PV D
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 158 ---LDSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQV 197
+ ++L+I+ + + +TC A NT +L
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 65.9 bits (160), Expect = 8e-13
Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 1/97 (1%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
C + + TI W KD S + L SG
Sbjct: 18 SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-QASRIHQHKEKLWFVPAKVEDSGH 76
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
Y CV N++ R + N L + +F Q
Sbjct: 77 YYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113
Score = 60.5 bits (146), Expect = 5e-11
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAAL--------- 57
T P +SP N +++G + LIC++T G + W +G +D +
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVE 265
Query: 58 --SITHVDQYNSMLVIDSVSARH-SGNYSCTVRNMVAEDTQVQRLIVNV 103
+ ++L I + +R ++C +N D +LI V
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 102 bits (256), Expect = 2e-27
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 19/186 (10%)
Query: 20 TLNVGERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
++G + L CS+ +T +WLK G L S
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------ALPGQKTEFKVDSDDQ 60
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
G YSC E + ++ PP++++ + + EG ++C P
Sbjct: 61 WGEYSCVFLP---EPMGTANIQLHGPPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDW 116
Query: 139 RWLKDGKPLSPRFPVNVSD-----LDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYS 192
W K S L I +++ A G+Y C +++ +
Sbjct: 117 AWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI 176
Query: 193 SKLQVK 198
L+V+
Sbjct: 177 ITLRVR 182
Score = 53.5 bits (128), Expect = 5e-09
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG-----RYLDNSAALSITHV 62
PP++ +N GE A L+C W K ++ S +
Sbjct: 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 141
Query: 63 DQYNSMLVIDSVS-ARHSGNYSCTVRNMVAEDTQVQRLIV 101
Q S L I++++ G Y C + D + L V
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 102 bits (256), Expect = 5e-27
Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 14/201 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P++ + + E A+L C + G TI+W KDG + + S + ++
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGAL 67
Query: 69 ---LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGL--PEGAR 122
+ + G Y C +N V + ++ L + V F +G
Sbjct: 68 FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD--DFRVEPKDTRVAKGET 125
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL----LSINSVSAAHSGEY 178
+ CG G P T+ W+KDG PL ++ + L I++V G Y
Sbjct: 126 ALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY 185
Query: 179 TCVASNTAAQARYSS-KLQVK 198
C+A N S KL V+
Sbjct: 186 KCIAQNLVGTRESSYAKLIVQ 206
Score = 69.5 bits (170), Expect = 1e-14
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ + + + + GE A L C KG T+ W+KDG LD+ A+S
Sbjct: 102 LQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161
Query: 63 DQYNSM----LVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESF 110
+ + L+I +V GNY C +N+V + +LIV V
Sbjct: 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHH 214
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 102 bits (256), Expect = 5e-27
Identities = 46/201 (22%), Positives = 69/201 (34%), Gaps = 17/201 (8%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
PP++ + ++ GE A+L C G TI+W K G ++ +H
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 67 -----SMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIESFAFPFDGL--P 118
+V S G Y C RN + E + L V + F +
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRD--DFRQNPSDVMVA 124
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
G + C G P TI W KDG PL + L I + +G+Y
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR----GGKLMITYTRKSDAGKY 180
Query: 179 TCVASNTAAQARYSS-KLQVK 198
CV +N + +L V
Sbjct: 181 VCVGTNMVGERESEVAELTVL 201
Score = 67.1 bits (164), Expect = 7e-14
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 5/106 (4%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ + + + + VGE A + C +G TI W KDG LD+
Sbjct: 105 LEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR- 163
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKI 107
L+I +G Y C NMV E ++V L V P
Sbjct: 164 ---GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 99.5 bits (248), Expect = 8e-26
Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 18/202 (8%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQYN 66
PP++ + + VG AS C+ GD P +I W K+G+ + + + ++
Sbjct: 5 HPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGI 63
Query: 67 SMLVIDSV-SARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLP------ 118
S+L I+ V + R Y C N V + L + K + P
Sbjct: 64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
G + C G+P I W+K+ + P L I + G+Y
Sbjct: 124 VGHTVLMTCKAI-GNPTPNIYWIKNQTKVDMSNPRYSLK----DGFLQIENSREEDQGKY 178
Query: 179 TCVASNTA--AQARYSSKLQVK 198
CVA N+ ++ ++ L VK
Sbjct: 179 ECVAENSMGTEHSK-ATNLYVK 199
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 97.6 bits (243), Expect = 2e-25
Identities = 25/191 (13%), Positives = 51/191 (26%), Gaps = 25/191 (13%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
+ ++ + +L C + +W + + S
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-----------SQASS 55
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
ID+ + SG Y C D +L V++ + P E + C
Sbjct: 56 YFIDAATVNDSGEYRCQTNLSTLSDPV--QLEVHIGWLL--LQAPRWVFKEEDPIHLRCH 111
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
+ +L++GK +S I + SG Y C +
Sbjct: 112 SWKNTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSGSYFCRGLVGSKN 162
Query: 189 ARYSS-KLQVK 198
+ + +
Sbjct: 163 VSSETVNITIT 173
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 96.6 bits (240), Expect = 7e-25
Identities = 40/198 (20%), Positives = 63/198 (31%), Gaps = 27/198 (13%)
Query: 20 TLNVGERASLICSITK--GDIPLTIKWLKDGRYLDNSAALSIT----------------H 61
T +GER +L + + + W K G + + H
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD-GLPEG 120
LV+ + + H GNY C ++ E T+ + L V P + P+
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSV--HSERSQFPDF 119
Query: 121 ARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSL--LSINSVSAAHSGE 177
+ V C V P ++WL +G +P + SL S+
Sbjct: 120 SVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLP 178
Query: 178 YTCVASNTA--AQARYSS 193
TCV N A Y S
Sbjct: 179 VTCVGKNDKEEAHGVYVS 196
Score = 45.8 bits (108), Expect = 3e-06
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 16/84 (19%)
Query: 131 HGDPPLTIRWLKDGKP------LSPRFPVNVSD----------LDSFSSLLSINSVSAAH 174
P + + W K G V + + + L + + + +H
Sbjct: 19 SLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 78
Query: 175 SGEYTCVASNTAAQARYSSKLQVK 198
G Y C + L V
Sbjct: 79 DGNYLCRMKLGETEVTKQEHLSVV 102
Score = 43.1 bits (101), Expect = 2e-05
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P LS + ++ C++ ++WL A + + + +
Sbjct: 103 KPLTLSVHSERSQFPDFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161
Query: 68 MLVI---DSVSARHSGNYSCTVRNMVAE 92
L + S+ +C +N E
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 98.6 bits (245), Expect = 8e-25
Identities = 34/192 (17%), Positives = 65/192 (33%), Gaps = 26/192 (13%)
Query: 12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVI 71
++P PE LNV L CS + + W + + + ++ ++S+L +
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSA-----PVVWERMSQ--EPPQEMAKAQDGTFSSVLTL 55
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQRLI-VNVPPKIESF-----AFPFDGLPEGARTRV 125
+++ +G Y CT + +T ++ + + VP F F L E +
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITI 115
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C VT DP L + + ++ P + Y C +
Sbjct: 116 PCRVT--DPQLVVTLHEKKGDVALPVPYD----------HQRGFSGIFEDRSYICKTTI- 162
Query: 186 AAQARYSSKLQV 197
+ S V
Sbjct: 163 GDREVDSDAYYV 174
Score = 89.0 bits (220), Expect = 3e-21
Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 20/198 (10%)
Query: 8 VPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
V + L ++ C +T D L + + AL + + Q
Sbjct: 93 VGFLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEK----KGDVALPVPYDHQRG 146
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDG-LPEGARTR 124
+ + +Y C E D+ + I + +G
Sbjct: 147 FSGIFED------RSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200
Query: 125 VICGVTHGDPPLTIRWLKDGK----PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
++C V G+ + W K + P + S+L I S SG YTC
Sbjct: 201 LMCIVI-GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTC 259
Query: 181 VASNTAAQARYSSKLQVK 198
+ + + + +
Sbjct: 260 NVTESVNDHQDEKAINIT 277
Score = 68.2 bits (166), Expect = 9e-14
Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDG----RYLDNSAA 56
+ +S + + GE +L+C + G+ + +W R ++
Sbjct: 173 YVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI-GNEVVNFEWTYPRKESGRLVEPVTD 231
Query: 57 LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
+ S+L I S SG Y+C V V + + + + V
Sbjct: 232 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 95.3 bits (237), Expect = 2e-24
Identities = 25/191 (13%), Positives = 53/191 (27%), Gaps = 25/191 (13%)
Query: 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
+ + + +L C + +W + + + S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-----------ASSY 56
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
ID+ + SG Y C + D +L V++ + P E + C
Sbjct: 57 FIDAATVDDSGEYRCQTQLSTLSDPV--QLEVHIGWLL--LQAPRWVFKEEDPIHLRCHS 112
Query: 130 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 189
+ +L++GK +S I + SG Y C +
Sbjct: 113 WKNTALHKVTYLQNGKGRKYF---------HHNSDFYIPKATLKDSGSYFCRGLVGSKNV 163
Query: 190 RYSS-KLQVKG 199
+ ++ +
Sbjct: 164 SSETVQITITQ 174
Score = 55.7 bits (134), Expect = 9e-10
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 12/106 (11%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
+ L P + L C K + +L++G+
Sbjct: 84 LEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-------- 133
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDT-QVQRLIVNVPPKI 107
+NS I + + SG+Y C + + ++ + +
Sbjct: 134 -HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 94.6 bits (235), Expect = 3e-24
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 27/194 (13%)
Query: 8 VPPK--LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
VP K +S P + GE +L C+ + KW +G + +
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------- 49
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
NS L I + SG Y C + + + + + V + + EG +
Sbjct: 50 NSSLNIVNAKFEDSGEYKCQHQQVNESEP----VYLEVFSDWLLLQASAEVVMEGQPLFL 105
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C + + KDG+ L + + +SI + + SG Y C
Sbjct: 106 RCHGWRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVW 156
Query: 186 AAQARYSS-KLQVK 198
+ V
Sbjct: 157 QLDYESEPLNITVI 170
Score = 62.6 bits (152), Expect = 2e-12
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
V L + G+ L C + + + KDG L
Sbjct: 79 VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW-------- 130
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPPKIE 108
N + I + + SG Y CT + +++ + V P+ +
Sbjct: 131 -YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 96.9 bits (240), Expect = 9e-24
Identities = 41/241 (17%), Positives = 71/241 (29%), Gaps = 43/241 (17%)
Query: 2 LVIFSTVPPKLSPTNP--ERTLNVGERASLICSIT----KGDIPLTIKWLKDGRYLDNSA 55
L + SP + + C + TI W + N
Sbjct: 111 LEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNF- 169
Query: 56 ALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFA 111
+V L ++GNY+C V T+ + V PK
Sbjct: 170 ----NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVP- 224
Query: 112 FPFDGLPE---------GARTRVICGVTH---GDPPLTIRWLKDGKPL---------SPR 150
P P G + C V D + W DGK +
Sbjct: 225 -PVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES 283
Query: 151 FPVNVSDLDSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
+ ++ ++ + +LSI V++ Y C A + + ++K++ K P YT
Sbjct: 284 ISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV----PAPRYT 339
Query: 210 L 210
+
Sbjct: 340 V 340
Score = 96.1 bits (238), Expect = 1e-23
Identities = 35/209 (16%), Positives = 57/209 (27%), Gaps = 30/209 (14%)
Query: 23 VGERASLICSI----------TKGDIPLTIKWLKDGRYLD----NSAALSITHVDQYNSM 68
E A + C + T LT+ W + D + L + + +
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG---LPEGARTRV 125
L +GNY+C +RN L V + E R+
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 126 ICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
C TI W + V LS +++G YTCV
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG-----MNLSFLIALISNNGNYTCV 195
Query: 182 ASNTAAQARYSS----KLQVKGNLNRLPP 206
+ + ++V G+ P
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVGSPKNAVP 224
Score = 56.8 bits (136), Expect = 1e-09
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAA 173
P T LT+ W + P+N ++ +L
Sbjct: 30 PLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN 89
Query: 174 HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
+G YTC+ NT ++ + L+V + L +
Sbjct: 90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHK 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 95.6 bits (237), Expect = 2e-23
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 15/195 (7%)
Query: 10 PKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSML 69
P L P +++VG+ L C + G W+ + S +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKSGGLPS--LGLT 215
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGV 129
+ + S + N +C N V ++ V+ P + E + V
Sbjct: 216 LANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP-----ASVQLHTAVEMHHWCIPFSV 270
Query: 130 THGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 183
G P ++RWL +G L+ F ++ L +N + ++G YT +A+
Sbjct: 271 -DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 184 NTAAQARYSSKLQVK 198
N QA S
Sbjct: 330 NPFGQASASIMAAFM 344
Score = 52.8 bits (126), Expect = 2e-08
Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY- 65
V + T + S+ P +++WL +G L+ ++ + ++
Sbjct: 244 QVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAA 302
Query: 66 -----NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+ L ++ + ++GNY+ N + + P
Sbjct: 303 NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 93.4 bits (231), Expect = 4e-22
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 36/203 (17%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
+ I+S P + T PE ++ G ++ C +T+ + +
Sbjct: 278 VTIYSFPAPNVILTKPE--VSEGTEVTVKCE-AHPRAKVTLNGVPAQPLGPRA------- 327
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFAFPFDG- 116
L++ + + ++SC+ VA Q + L V P+++ P +
Sbjct: 328 ------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 381
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
PE ++ +C G+P ++ LKDG P + +V+ G
Sbjct: 382 WPENSQQTPMCQAW-GNPLPELKCLKDGTFPLP--------------IGESVTVTRDLEG 426
Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
Y C A +T + + V
Sbjct: 427 TYLCRARSTQGEVTREVTVNVLS 449
Score = 80.7 bits (198), Expect = 1e-17
Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 22/210 (10%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDNSAALSIT 60
+ P ++ VG+ +L C + G LT+ L+ + L A+
Sbjct: 80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG-- 137
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED--------TQVQRLIVNVPPKIESFAF 112
+ + H N+SC + + +L V P
Sbjct: 138 --EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLV 195
Query: 113 PFDGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 170
L + V+C + P + + L+P V+ + S + SV
Sbjct: 196 SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSV 251
Query: 171 SAAHSGEY--TCVASNTAAQARYSSKLQVK 198
+A G TC + +
Sbjct: 252 TAEDEGTQRLTCAVILGNQSQETLQTVTIY 281
Score = 76.1 bits (186), Expect = 4e-16
Identities = 30/175 (17%), Positives = 52/175 (29%), Gaps = 17/175 (9%)
Query: 12 LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVI 71
+SP+ L G + CS T D P+ + + + N+ V
Sbjct: 4 VSPSKV--ILPRGGSVLVTCS-TSCDQPMLLGI--------ETPLPKKELLLPGNNRKVY 52
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH 131
+ + + C + T L V P+ A P G + C V
Sbjct: 53 ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
Query: 132 GDPP--LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
G P LT+ L+ K L + + ++ H ++C
Sbjct: 113 GAPRANLTVVLLRGEKELKRE----PAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163
Score = 73.4 bits (179), Expect = 3e-15
Identities = 30/204 (14%), Positives = 60/204 (29%), Gaps = 24/204 (11%)
Query: 8 VPPKLSPTNP-ERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDNSAALSITHVDQ 64
V P P R L V + +++CS+ + + L+ ++T+ +
Sbjct: 186 VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN----PTVTYGND 241
Query: 65 YNSMLVIDSVSARHSGNY--SCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
S SV+A G +C V +Q + + P + EG
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTE 300
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
V C H +T+ + + L + + + ++C A
Sbjct: 301 VTVKCEA-HPRAKVTLNGVPAQPLGPR-------------AQLLLKATPEDNGRSFSCSA 346
Query: 183 SNTAAQARYSSKLQVKGNLNRLPP 206
+ A + + P
Sbjct: 347 TLEVAGQLIHKNQTRELRVLYGPR 370
Score = 52.6 bits (125), Expect = 4e-08
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 17/100 (17%)
Query: 7 TVPPKLSPTNPER--TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
P+L + T + + +C G+ +K LKDG
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQ-AWGNPLPELKCLKDG--------------TF 410
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
+ +V+ G Y C R+ E T+ + V P
Sbjct: 411 PLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 34.1 bits (77), Expect = 0.031
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 117 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
LP G V C + P L I K L L ++ +
Sbjct: 11 LPRGGSVLVTCSTSCDQPMLLGIETPLPKKEL----------LLPGNNRKVYELSNVQED 60
Query: 176 GEYTCVASNTAAQARYSSKLQV 197
+ C ++ Q+ + L V
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTV 82
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 88.9 bits (220), Expect = 4e-22
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 42/201 (20%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRY----------------LDNSAALSITHVDQYN 66
G+ L C+ ++ W + L++ A + DQ N
Sbjct: 9 KGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
L+I ++ S Y C V + E Q+ + L +G +
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH--------LLQGQSLTLT 118
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
+++ LS++ + SG +TC
Sbjct: 119 LESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTCTVLQNQ 166
Query: 187 AQARYSSKLQVKGNLNRLPPS 207
+ + + V +
Sbjct: 167 KKVEFKIDIVVLA----FQKA 183
Score = 51.9 bits (124), Expect = 2e-08
Identities = 12/94 (12%), Positives = 26/94 (27%), Gaps = 12/94 (12%)
Query: 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
N + L G+ +L +++ L +
Sbjct: 102 TANSDTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQ 149
Query: 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
+ + SG ++CTV + ++V K
Sbjct: 150 LELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 89.1 bits (220), Expect = 6e-22
Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 12/189 (6%)
Query: 11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV 70
+ +P + +G+ SL CS T + P W N + + S L
Sbjct: 4 ETTPESRY-LAQIGDSVSLTCSTTGCESP-FFSWRTQIDSPLNGKVTN----EGTTSTLT 57
Query: 71 IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
++ VS + +Y CT + + ++ + PK L G V C V
Sbjct: 58 MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVA 116
Query: 131 HGDPP--LTIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
P L I LK + + + L++ S ++ V C A
Sbjct: 117 DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLH 176
Query: 186 AAQARYSSK 194
+
Sbjct: 177 IDEMDSVPT 185
Score = 47.5 bits (112), Expect = 7e-07
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
G + C T G W PL+ + + S L++N VS +
Sbjct: 14 QIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVTNEGTT-----STLTMNPVSFGNEH 67
Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
Y C A+ + + ++++
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYS 90
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 91.8 bits (227), Expect = 6e-22
Identities = 27/205 (13%), Positives = 53/205 (25%), Gaps = 38/205 (18%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRY----------------LDNSAALSITHVDQYN 66
G+ L C+ ++ W + L++ A + DQ N
Sbjct: 8 KGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
L+I ++ S Y C V + E Q+ + L +G +
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEE-VQLLVFGLTANSDTH--------LLQGQSLTLT 117
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
+++ LS++ + SG +TC
Sbjct: 118 LESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTCTVLQNQ 165
Query: 187 AQARYSSKLQVKGNLNRLPPSYTLV 211
+ + + V Y
Sbjct: 166 KKVEFKIDIVVLAFQKASSIVYKKE 190
Score = 85.6 bits (211), Expect = 1e-19
Identities = 24/203 (11%), Positives = 46/203 (22%), Gaps = 31/203 (15%)
Query: 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
N + L G+ +L +++ L +
Sbjct: 101 TANSDTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQ 148
Query: 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGD 133
+ + SG ++CTV + ++V K S + +G + V
Sbjct: 149 LELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLT 208
Query: 134 PPLTIRWLKDGKPLSP-------------------RFPVNVSDLDSFSSLLSINSVSAAH 174
+ W + S + + L A
Sbjct: 209 GSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAG 268
Query: 175 SGEYTCVASNTAAQARYSSKLQV 197
SG T + L V
Sbjct: 269 SGNLTLALEAKTGKLHQEVNLVV 291
Score = 62.9 bits (152), Expect = 9e-12
Identities = 22/183 (12%), Positives = 44/183 (24%), Gaps = 34/183 (18%)
Query: 22 NVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHVDQYNSM---LVIDSVS 75
+ L + +T + + + + L
Sbjct: 206 KLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ 265
Query: 76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTH-GDP 134
SGN + + + Q L+V + + C V P
Sbjct: 266 YAGSGNLTLALEAKTGKLHQEVNLVVMRAT--------------QLQKNLTCEVWGPTSP 311
Query: 135 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
L + + K S V +G + C+ S+ + Q S
Sbjct: 312 KLMLSLKLENKEAKV------------SKREKAVWVLNPEAGMWQCLLSD-SGQVLLESN 358
Query: 195 LQV 197
++V
Sbjct: 359 IKV 361
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 89.1 bits (220), Expect = 8e-22
Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 14/202 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
T N + + C + ++ +++ + +
Sbjct: 9 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK---G 65
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAF---PFDGLPEGARTRV 125
I S ++G C + + ++V V +I L G + +
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125
Query: 126 ICGVTHG-DPPLTIRWLKDGKPLSPRFPVN-------VSDLDSFSSLLSINSVSAAHSGE 177
C + + W + VN S++ F S L+I+ V+ + G
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185
Query: 178 YTCVASNTAAQARYSSKLQVKG 199
YTC AS+ + S+ ++V
Sbjct: 186 YTCAASSGLMTKKNSTFVRVHE 207
Score = 65.2 bits (158), Expect = 5e-13
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Query: 1 MLVIFSTVPPKLSPTNPERT-LNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAAL- 57
++V+ + + L+VGE+ L C+ + ++ + W + +
Sbjct: 96 IVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVN 155
Query: 58 ------SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
S + + ++ S L ID V+ G Y+C + + + V+ P
Sbjct: 156 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209
Score = 43.6 bits (102), Expect = 1e-05
Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 3/96 (3%)
Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 162
+ + + + + C + + +++ K P D
Sbjct: 7 IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG- 65
Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
+I S +++G C A + + V
Sbjct: 66 --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 89.3 bits (221), Expect = 1e-21
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 36/203 (17%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
+ I+S P + T PE ++ G ++ C +T+ + +
Sbjct: 93 VTIYSFPAPNVILTKPE--VSEGTEVTVKCE-AHPRAKVTLNGVPAQPLGPRA------- 142
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFAFPFDG- 116
L++ + + ++SC+ VA Q + L V P+++ P +
Sbjct: 143 ------QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWT 196
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
PE ++ +C G+P ++ LKDG P + +V+ G
Sbjct: 197 WPENSQQTPMC-QAWGNPLPELKCLKDGTFPLP--------------IGESVTVTRDLEG 241
Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
Y C A +T + + V
Sbjct: 242 TYLCRARSTQGEVTREVTVNVLS 264
Score = 69.3 bits (169), Expect = 3e-14
Identities = 31/196 (15%), Positives = 62/196 (31%), Gaps = 29/196 (14%)
Query: 12 LSPTNPE----RTLNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHVDQ 64
L T P+ R L V + +++CS+ G P + + L+ + +T+ +
Sbjct: 2 LPATPPQLVSPRVLEVDTQGTVVCSLD-GLFPVSEAQVHLALGDQRLNPT----VTYGND 56
Query: 65 YNSMLVIDSVSARHSG--NYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
S SV+A G +C V +Q + + P + + EG
Sbjct: 57 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE-VSEGTE 115
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
V C H +T+ + + L + + + ++C A
Sbjct: 116 VTVKCEA-HPRAKVTLNGVPAQPLGPR-------------AQLLLKATPEDNGRSFSCSA 161
Query: 183 SNTAAQARYSSKLQVK 198
+ A +
Sbjct: 162 TLEVAGQLIHKNQTRE 177
Score = 48.1 bits (114), Expect = 7e-07
Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 7 TVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
P+L T + + +C G+ +K LKDG +
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQ-AWGNPLPELKCLKDGTFPLPI---------- 229
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
+V+ G Y C R+ E T+ + V P
Sbjct: 230 ----GESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 83.3 bits (206), Expect = 7e-21
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVS 156
V+ P I P + V G+P ++W +G L+ ++V+
Sbjct: 1 VHFAPTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVT 55
Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
+ + L +++ + ++G+YT +A N + G
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 69.4 bits (170), Expect = 1e-15
Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSI----THV 62
P ++ + ++ G+ ++W +G L+ S + T+
Sbjct: 2 HFAPTITFLESPT---SDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
+Y+ L +D+ + ++G+Y+ +N +D + P I+
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGID 103
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 85.9 bits (212), Expect = 1e-20
Identities = 31/191 (16%), Positives = 57/191 (29%), Gaps = 21/191 (10%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY---------------NS 67
L+ + W K + N
Sbjct: 13 EDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG 71
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVIC 127
L+ ++ + G Y+ + + TQ P + F + + + V
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDS-VTL 130
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
D I+WL + + L + +S +S+L I+ + +GEY C SN +
Sbjct: 131 TCLSNDIGANIQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEYQCEISNPVS 187
Query: 188 QAR-YSSKLQV 197
R S KL +
Sbjct: 188 VRRSNSIKLDI 198
Score = 65.5 bits (159), Expect = 4e-13
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
+ T+ + +L C DI I+WL + + L + ++++
Sbjct: 103 RFHVHQPVTQPFLQVTNTTVKELDSVTLTCL--SNDIGANIQWLFNSQSLQLTERMTLS- 159
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMV-AEDTQVQRLIVNVPP 105
Q NS+L ID + +G Y C + N V + +L + P
Sbjct: 160 --QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 86.1 bits (212), Expect = 3e-20
Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 50/238 (21%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSI--TKGDIPLTIKWLKDGRYLDNSAALSI---- 59
S P L+ ++P+ ++VGE + C + T+ + WL D S +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 60 ---------------THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
+ L++ V G Y+C +R + + + V
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL 121
Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPV--------- 153
P+ + G T++ C + + + W+ + V
Sbjct: 122 PEEPRDLR----VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 154 --------------NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
D+ + + +V + G YTC ++R + L V
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
Score = 42.9 bits (100), Expect = 3e-05
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 25/119 (21%)
Query: 12 LSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDG----------RYLDNSAALSI 59
L + + VG+ + CSI + + W+ Y N +
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 60 THVDQY-------------NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+ ++ + + + +V G Y+C++ E + L V
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Score = 38.7 bits (89), Expect = 0.001
Identities = 15/104 (14%), Positives = 23/104 (22%), Gaps = 25/104 (24%)
Query: 118 PEGARTRVICGV--THGDPPLTIRWLKDGKPLSPRFPV---------------------N 154
G + C V T + WL V
Sbjct: 18 HVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG 77
Query: 155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
+ + S L + V A G YTC +++
Sbjct: 78 DTFHNDGS--LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 78.7 bits (194), Expect = 6e-19
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNV 155
L V PP++ S PE I V G+PP T+ WL +G+PL S V
Sbjct: 2 ALTVYYPPRVVSLE-----EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
Query: 156 -SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
+ + L N + ++G YT +A N A +
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
Score = 67.9 bits (166), Expect = 6e-15
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 8 VPPK-LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH---VD 63
PP+ +S PE L + + G+ P T+ WL +G+ L S + + + +
Sbjct: 7 YPPRVVSLEEPELRLE----HCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP 113
L+ + + ++GNY+ +N + Q P P
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDEVSP 111
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 82.6 bits (203), Expect = 7e-19
Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 35/202 (17%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGD---IPLTIKWLKDGRYLDNSAALSITHVDQ 64
+ +S + +R G+ +L ++ + LT W KD + +N+
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN---------- 50
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPPKIESFAFPFDGL-PEGAR 122
+ L + ++ ++G+Y TV++ + + ++ I + P
Sbjct: 51 -TATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109
Query: 123 TRVICGVTH--GDPP-----LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+ V G P L W K + + ++I +A +
Sbjct: 110 VELHATVKFSGGKTPADNYELHYSWSKGEDVIDT------------TQDITIQEFTADKN 157
Query: 176 GEYTCVASNTAAQARYSSKLQV 197
G YT + + S+ ++
Sbjct: 158 GVYTVKVWGESEDSAASASTKI 179
Score = 70.6 bits (172), Expect = 1e-14
Identities = 25/213 (11%), Positives = 56/213 (26%), Gaps = 36/213 (16%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSIT-------KGDIPLTIKWLKDGRYLDNS 54
++ ++ L ++ + L W K +D +
Sbjct: 85 FLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT 144
Query: 55 AALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPF 114
++I +A +G Y+ V + + +
Sbjct: 145 QDITIQ------------EFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVE 192
Query: 115 DG-LPEGARTRVICGVTH-------GDPPLTIRW----LKDGKPLSPRFPVNVSDLDSFS 162
+ G + V+ G P LTI++ ++G+ V +
Sbjct: 193 SKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGF 252
Query: 163 SL-----LSINSVSAAHSGEYTCVASNTAAQAR 190
S+ L S + + ++ CVA
Sbjct: 253 SITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285
Score = 32.1 bits (72), Expect = 0.12
Identities = 16/121 (13%), Positives = 41/121 (33%), Gaps = 17/121 (14%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSIT-------KGDIPLTIKW----LKDGRY 50
++ +T+ +T+ +G SL ++ G LTIK+ ++G+
Sbjct: 178 KIMLATMNVD-QDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQL 236
Query: 51 LDNSAALSITHVDQYNSM-----LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+ + S+ L +S + + + C + + + + +
Sbjct: 237 SPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSR 296
Query: 106 K 106
K
Sbjct: 297 K 297
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 76.6 bits (189), Expect = 2e-18
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
EG + +C + + D + W + L S ++ ++ D + L + ++
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY--EITYEDGVAILY-VKDITKLDD 70
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G Y C N + ++L VKG
Sbjct: 71 GTYRCKVVNDYGEDSSYAELFVKG 94
Score = 66.2 bits (162), Expect = 1e-14
Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
G +C I D + W R L+NS IT+ D L + ++
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAI-LYVKDITKLD 69
Query: 79 SGNYSCTVRNMVAEDTQVQRLIV 101
G Y C V N ED+ L V
Sbjct: 70 DGTYRCKVVNDYGEDSSYAELFV 92
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 79.5 bits (196), Expect = 3e-18
Identities = 25/121 (20%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIR 139
Y+ +V + + + P + + EG + + C V P TI
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAVYT--------WEGNQVNITCEVF-AYPSATIS 51
Query: 140 WLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
W +DG+ L N+ +S L + S G Y C A N Q L
Sbjct: 52 WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQA 111
Query: 199 G 199
Sbjct: 112 D 112
Score = 71.8 bits (176), Expect = 2e-15
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYN 66
PKL G + ++ C + TI W +DG+ L +S +I +
Sbjct: 18 YAPKLQG-PVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNIKIYNTPSA 75
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
S L + S GNY+CT N + +++ L+ P
Sbjct: 76 SYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTP 114
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 76.6 bits (189), Expect = 3e-18
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 99 LIVNVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNV 155
++ V P I + G V C + G+PP I W KD + L
Sbjct: 5 VLERVAPTITGN--LENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGI---- 57
Query: 156 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
L + L+I V G YTC A + A+ + ++G
Sbjct: 58 -VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 69.7 bits (171), Expect = 1e-15
Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 4/109 (3%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
L + V P ++ +T ++GE + C+ + G+ P I W KD L + + +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLK- 60
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
N L I V G Y+C +++ I+ + +
Sbjct: 61 --DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 78.0 bits (192), Expect = 5e-18
Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 36/191 (18%)
Query: 23 VGERASLICSITKGDIPL-TIKWLKDGRYL-------DNSAALSITHVDQY-NSMLVIDS 73
+G+ +L + + IKW K + + N L I
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKH 72
Query: 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNV-----PPKIESFAFPFDGLPEGARTRVICG 128
+ Y ++ + ++ + + + PKI T + C
Sbjct: 73 LKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW---------TCINTTLTCE 123
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
V +G P + +DGK L S + + + + S ++ C A N ++
Sbjct: 124 VMNGTDP-ELNLYQDGKHLKL------------SQRVITHKWTTSLSAKFKCTAGNKVSK 170
Query: 189 ARYSSKLQVKG 199
+
Sbjct: 171 ESSVEPVSCPE 181
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 75.4 bits (186), Expect = 6e-18
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
EG R+ V+ G P + W +G+ + + VS+ S L V A+ +
Sbjct: 18 DEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS--LIFEVVRASDA 74
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G Y CVA N A +A ++ +L V
Sbjct: 75 GAYACVAKNRAGEATFTVQLDVLA 98
Score = 59.6 bits (145), Expect = 5e-12
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 6 STVPPK--LSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
+ PP+ P N +++ G + ++ G + W +GR + + + +
Sbjct: 2 AMGPPRFIQVPEN--MSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSE 58
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
+ L+ + V A +G Y+C +N E T +L V
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 76.1 bits (187), Expect = 6e-18
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 8/116 (6%)
Query: 98 RLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPV 153
L VN PP I S G + ++ C + PP I W L R+ V
Sbjct: 8 TLTVNGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTV 65
Query: 154 NVSDL-DSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
+ S L+I+++ A Y C A N+ +L+ +G+ P S
Sbjct: 66 ETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSS 121
Score = 64.1 bits (156), Expect = 2e-13
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 7/104 (6%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSA-----ALSITHV 62
PP +S T + GE+ + C I P I W L++ +I+
Sbjct: 13 GPPIISSTQTQHA-LHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 71
Query: 63 DQYNSMLVIDSVSARH-SGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+ S L I ++ Y+CT N DT++ RL
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 115
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 76.8 bits (189), Expect = 8e-18
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL--PEGARTRVIC 127
S S+ S + V N A +V +V P F + EG+ R C
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPY---FTKTILDMEVVEGSAARFDC 63
Query: 128 GVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
V G P + W KD P+ S F ++ + + S L+I+ V +YTC A N+
Sbjct: 64 KVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS--LTISEVCGDDDAKYTCKAVNS 120
Query: 186 AAQARYSSKLQVKG 199
+A +++L V+
Sbjct: 121 LGEATCTAELLVET 134
Score = 64.9 bits (158), Expect = 2e-13
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
+ G A C + G + W KD + S I + ++ N L I V
Sbjct: 51 MEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFA 111
Y+C N + E T L+V K
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETMGKEGEGE 142
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.1 bits (185), Expect = 1e-17
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 93 DTQVQRLIVNVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP- 149
V + PPKI G + ++ G P + W K G PL
Sbjct: 10 AQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTS 68
Query: 150 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
R V SD F ++ + + + SGEY + + +++V
Sbjct: 69 RVHVRTSD---FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
Score = 65.5 bits (160), Expect = 5e-14
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 7 TVPPKLS-PTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
PPK+ P + +T GE+ +L+ G + W K G LD S + D
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTSRV-HVRTSD 76
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+++ + + SG Y +V+ +DT R+ V
Sbjct: 77 F-DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 77.9 bits (191), Expect = 1e-17
Identities = 38/231 (16%), Positives = 69/231 (29%), Gaps = 42/231 (18%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR----------------- 49
+VPP + + G+ L C+ T ++W R
Sbjct: 5 SVPPLV-------EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSEL 57
Query: 50 --YLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVA-EDTQVQRLIVNVPPK 106
+ ++ S + LV+ +Y C VR A RL V P+
Sbjct: 58 QVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPE 117
Query: 107 ---IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------ 157
+ + + A+ C +G+P I W ++G+ L +N
Sbjct: 118 ATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRT 177
Query: 158 ------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLN 202
L S +S L + + C A + + R+ +L
Sbjct: 178 VREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLT 228
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 77.4 bits (190), Expect = 1e-17
Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 22/208 (10%)
Query: 3 VIFS-TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DN 53
++F+ T P ++ T++VG SL C ++ ++
Sbjct: 1 MLFTVTAPKEVY------TVDVGSSVSLECDFD-RRECTELEGIRASLQKVENDTSLQSE 53
Query: 54 SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP 113
A L + ++ I SV R SG Y C V A D + + V
Sbjct: 54 RATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRIL 113
Query: 114 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 173
P ++ C G P + W P + L +S+L +
Sbjct: 114 EV--PGTGEVQLTCQAR-GYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQP-- 168
Query: 174 HSGEYTCVASNTAAQARYSSKLQVKGNL 201
S ++C+ N + S+ + +
Sbjct: 169 -SRNFSCMFWNAHMKELTSAIIDPLSRM 195
Score = 42.3 bits (99), Expect = 4e-05
Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 9/93 (9%)
Query: 127 CGVTHGDPPLTIRWLKDGKPL--------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
C + ++ S R + L +L I SV SG+Y
Sbjct: 24 CDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQY 82
Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPPSYTLV 211
C+ AA ++VK + R+ V
Sbjct: 83 RCLVICGAAWDYKYLTVKVKASYMRIDTRILEV 115
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 77.2 bits (189), Expect = 2e-17
Identities = 30/193 (15%), Positives = 45/193 (23%), Gaps = 42/193 (21%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
L C I W KDG+ I + + + S + G Y
Sbjct: 18 DGSVLLTC----DAEAKNITWFKDGK--------MIGFLTEDKKKWNLGSNAKDPRGMYQ 65
Query: 84 CTVRNMVAEDTQV------------QRLIVNVPPKIESFAFPFDGLPE------------ 119
C ++ QV + K ++ DG E
Sbjct: 66 CKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVS 125
Query: 120 --GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
G + C P I W + K + D L SG
Sbjct: 126 ISGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGY 181
Query: 178 YTCVASNTAAQAR 190
Y C + +
Sbjct: 182 YVCYPRGSKPEDA 194
Score = 54.1 bits (129), Expect = 3e-09
Identities = 19/115 (16%), Positives = 27/115 (23%), Gaps = 17/115 (14%)
Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 174
E + C I W KDGK + L ++ S +
Sbjct: 13 YDYQEDGSVLLTCDA----EAKNITWFKDGKMIGF--------LTEDKKKWNLGSNAKDP 60
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDS 229
G Y C S S LQV + + + D
Sbjct: 61 RGMYQCKGSQ-----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDG 110
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 74.0 bits (182), Expect = 2e-17
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
P + C G+P T+RWLK+GK + + + L + SV + G
Sbjct: 21 PAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 178 YTCVASNTAAQARYSSKLQV 197
YTCV N ++ L V
Sbjct: 80 YTCVVENEYGSINHTYHLDV 99
Score = 63.2 bits (154), Expect = 2e-13
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
T K+ + C G+ T++WLK+G+ + V +
Sbjct: 8 TNTEKMEKRL--HAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L+++SV GNY+C V N L V
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 73.9 bits (182), Expect = 2e-17
Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 103 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLD 159
+PPKIE+ P D + EG V C T G+P + W G+ + + ++ + D
Sbjct: 4 IPPKIEAL--PSDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHIENTD 60
Query: 160 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
++L+ I V G YT N + + ++
Sbjct: 61 DLTTLI-IMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 61.6 bits (150), Expect = 1e-12
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--LSITHVDQY 65
+PPK+ + +++ G+ ++ C+ T G+ + W GR + + I + D
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDL 62
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
+ L+I V + G Y+ ++ N D+ + +
Sbjct: 63 TT-LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 73.5 bits (181), Expect = 3e-17
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 101 VNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSD 157
++ P I + D + + + T G+P T W KDGK + ++ + D
Sbjct: 3 ISSKPVIVTG--LQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKL-SED 58
Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
F L I+ + SG YTC N+A S KL +K
Sbjct: 59 KGGFF--LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 59.2 bits (144), Expect = 6e-12
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
+ P + + T++ A T G+ T W KDG+ + ++ D+
Sbjct: 4 SSKPVIVTGLQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSE-DKGG 61
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L I SG Y+CTV+N + +L +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 73.1 bits (180), Expect = 4e-17
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
EG + V G+P + WL++ +P+ R ++ L I + +
Sbjct: 18 REGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR--LRILAAERGDA 74
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G YTC A N + ++L+V+G
Sbjct: 75 GFYTCKAVNEYGARQCEARLEVRG 98
Score = 57.7 bits (140), Expect = 3e-11
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 6 STVPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
S PP + +++ G+ + + G+ + WL++ + + +
Sbjct: 2 SKAPPTFKVSLMD--QSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L I + +G Y+C N RL V
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 73.2 bits (180), Expect = 5e-17
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
EG R+ C V+ G P + W DGKP+ P + ++ L I V++ +G
Sbjct: 22 QEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
YTC+A+N A Q +S +L V P S
Sbjct: 81 YTCIATNRAGQNSFSLELVVAAK-ESGPSS 109
Score = 63.9 bits (156), Expect = 2e-13
Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 6 STVPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
S P P + T+ G+ + C ++ G + W DG+ + +A + +
Sbjct: 6 SGFRPHFLQAPGD--LTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRE 62
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
L+I+ V++R +G Y+C N +++ L+V S
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGPS 108
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 73.5 bits (181), Expect = 5e-17
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
+ P++ ++ + GE L +T G P+T W+K + + S + + + +
Sbjct: 4 GSSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSE-N 61
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
S L I + H G Y+ V N + L V P
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 73.1 bits (180), Expect = 6e-17
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
G + VT G P+T W+K K + + V + ++ S L I + H G Y
Sbjct: 21 AGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKLT-ILAARQEHCGCY 78
Query: 179 TCVASNTAAQARYSSKLQVKG 199
T + N + L V
Sbjct: 79 TLLVENKLGSRQAQVNLTVVD 99
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 72.0 bits (177), Expect = 2e-16
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 101 VNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSD 157
+ +I + P + EG R C G+P T+ WL+ G+ L S R V +
Sbjct: 11 TTLAARILTK--PRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
S I+SV A+ G Y+ V N+ + L ++
Sbjct: 68 YKS---TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 63.5 bits (155), Expect = 2e-13
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
+T+ ++ T+ GE A C G+ T+ WL+ G+ L SA +T +Y
Sbjct: 11 TTLAARILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVT-TTKY 68
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
S I SV A GNYS V N + L +
Sbjct: 69 KSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 71.6 bits (176), Expect = 2e-16
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDS 160
+ PKI + + + G + G P T W +P V+
Sbjct: 1 LKPKILTASRKIK-IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS--- 55
Query: 161 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
++ + S A SG Y N + ++ V+
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 68.5 bits (168), Expect = 2e-15
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+ PK+ + + + G +L G T W + L + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS-STT 58
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
+ S SGNY V+N + ED + +IV
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 74.6 bits (182), Expect = 3e-16
Identities = 34/243 (13%), Positives = 55/243 (22%), Gaps = 63/243 (25%)
Query: 15 TNPERTLNVGERASLICSIT--KGDIPLTIKWLKD-----------GRYLDNSAALSITH 61
T+ E ++ G L CS P I WLK G Y L
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 62 VDQYNSM-----------------LVIDSVSARHSGNYSCTVRNM-------VAEDTQVQ 97
D Y L + V + G Y C V + + V
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 127
Query: 98 RLIVNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--------- 147
++ + P + + EG + C + W
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANANVTWYTGPTFFENYETGTYQ 186
Query: 148 -------------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
S S + + L I + +G C + +
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARN--LVIRAAKITDAGRVWCELATGQGELDADRS 244
Query: 195 LQV 197
+
Sbjct: 245 STI 247
Score = 49.9 bits (118), Expect = 2e-07
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 21/113 (18%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
T ++ G ++ C T + W + +N + + N
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 69 --------------------LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
LVI + +G C + E + +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 70.8 bits (174), Expect = 3e-16
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+G+ V G P W K+G + S R + + L I V+ S
Sbjct: 18 GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE--LVIRDVTGEDS 74
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
A N A + + L V+
Sbjct: 75 ASIMVKAINIAGETSSHAFLLVQA 98
Score = 56.9 bits (138), Expect = 5e-11
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
+T+ G A + G +W K+G ++ S + + LVI V+
Sbjct: 15 QTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGED 73
Query: 79 SGNYSCTVRNMVAEDTQVQRLIV 101
S + N+ E + L+V
Sbjct: 74 SASIMVKAINIAGETSSHAFLLV 96
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 70.5 bits (173), Expect = 4e-16
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAH 174
+ G ++ C + D +I WL+DG L+ R + + + A
Sbjct: 15 VHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAESNRTRIT-------GEEVEVQDSVPAD 65
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
SG Y CV S+ + + V L P S
Sbjct: 66 SGLYACVTSSPSGSDTTYFSVNVSDALPSGPSS 98
Score = 65.1 bits (159), Expect = 5e-14
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 9/101 (8%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
++ G+ L C + D +I WL+DG L S IT
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLAESNRTRIT-----GEE 55
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
+ + SG Y+C + DT VNV + S
Sbjct: 56 VEVQDSVPADSGLYACVTSSPSGSDT--TYFSVNVSDALPS 94
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 71.1 bits (174), Expect = 5e-16
Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSD 157
P I G P ++RWL +G L+ F ++
Sbjct: 3 MPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57
Query: 158 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
L +N + ++G YT +A+N QA S N P
Sbjct: 58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106
Score = 56.1 bits (135), Expect = 2e-10
Identities = 11/79 (13%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQ------YNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
+++WL +G L+ ++ + ++ + L ++ + ++GNY+ N + +
Sbjct: 31 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90
Query: 95 QVQRLIVNVPPKIESFAFP 113
P + P
Sbjct: 91 ASIMAAFMDNPFEFNPEDP 109
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 70.5 bits (173), Expect = 6e-16
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
EG C V G+P I W KDGK + DLD SL + +
Sbjct: 21 FEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH-TTASTLDDD 78
Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
G YT +A+N + + +L V+ +N P S
Sbjct: 79 GNYTIMAANPQGRISCTGRLMVQA-VNSGPSS 109
Score = 52.4 bits (126), Expect = 3e-09
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%)
Query: 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQYNSMLVIDSVSAR 77
+ G + C + G+ I W KDG+ + + +I L + +
Sbjct: 18 YKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLD 76
Query: 78 HSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
GNY+ N + RL+V
Sbjct: 77 DDGNYTIMAANPQGRISCTGRLMVQAVN 104
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 69.7 bits (171), Expect = 7e-16
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
G + C V P I W+KDG PL S +L + + G
Sbjct: 23 APGGTVTLTCEVP-AQPSPQIHWMKDGVPLPL----------PPSPVLILPEIGPQDQGT 71
Query: 178 YTCVASNTAAQARYSSKLQV 197
Y+CVA++++ + S + +
Sbjct: 72 YSCVATHSSHGPQESRAVSI 91
Score = 55.5 bits (134), Expect = 1e-10
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
+L + G +L C + I W+KDG L + +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPP----------SPV 58
Query: 69 LVIDSVSARHSGNYSCTVRNMV--AEDTQVQRLIVNVP 104
L++ + + G YSC + ++++ + + P
Sbjct: 59 LILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 70.0 bits (172), Expect = 7e-16
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
P G TR I V P ++W +G L S + + ++ +L I S
Sbjct: 21 PCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKI--HYTNTSGVLTLE-ILDCHTDDS 76
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G Y V +N +A + L V G
Sbjct: 77 GTYRAVCTNYKGEASDYATLDVTG 100
Score = 58.8 bits (143), Expect = 1e-11
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 2/83 (2%)
Query: 19 RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARH 78
+ G+ I ++ +KW +G L S+ + T+ L I
Sbjct: 18 HRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTN-TSGVLTLEILDCHTDD 75
Query: 79 SGNYSCTVRNMVAEDTQVQRLIV 101
SG Y N E + L V
Sbjct: 76 SGTYRAVCTNYKGEASDYATLDV 98
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 72.8 bits (178), Expect = 8e-16
Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 25/196 (12%)
Query: 15 TNPERTLNVGERASLICSITKGDIPLT----IKWLKDGR-----------------YLDN 53
+ +G+ +L C + ++ +T + W + G
Sbjct: 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 64
Query: 54 SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAF 112
+ + ++ L + + G+Y+C V L V P+ +
Sbjct: 65 EFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 124
Query: 113 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSV 170
L C T G PP I W D + + P +S + +SL +
Sbjct: 125 KVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPS 183
Query: 171 SAAHSGEYTCVASNTA 186
S + TC + +
Sbjct: 184 SQVDGKQVTCKVEHES 199
Score = 44.7 bits (105), Expect = 8e-06
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN- 66
P+ + + L C T G P I W D + ++ +
Sbjct: 115 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTV 174
Query: 67 -SMLVIDSVSARHSGNYSCTVRN--MVAEDTQVQRLIVNVPPKI 107
S+ ++ S +C V + L V P
Sbjct: 175 TSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHH 218
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 69.7 bits (171), Expect = 9e-16
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
GA + C V G+PP + W K G+ L S R D L + + +
Sbjct: 26 VSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPA---DGAEHGLLLTAALPTDA 81
Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
G Y C A N A +A ++ + V
Sbjct: 82 GVYVCRARNAAGEAYAAAAVTVL 104
Score = 65.9 bits (161), Expect = 3e-14
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 2/98 (2%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP + G A L C + G+ P + W K G+ L S LS D
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPA-DGAEH 69
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
L++ + +G Y C RN E + V PP
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 72.0 bits (176), Expect = 2e-15
Identities = 27/208 (12%), Positives = 57/208 (27%), Gaps = 28/208 (13%)
Query: 23 VGERASLICSITKG----DIPLTIKWLKDGRYL-----------------DNSAALSITH 61
G ++ C L + W + + + A L
Sbjct: 15 YGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQ 74
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG-LPEG 120
+ N+ L I V + +G Y C + +R+ V V P
Sbjct: 75 LSLGNAALQITDVKLQDAGVYRCMISY---GGADYKRITVKVNAPYNKINQRILVVDPVT 131
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
+ + C G P + W + N + ++ S ++ + +
Sbjct: 132 SEHELTC-QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIF 190
Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPP 206
C + ++++L + PP
Sbjct: 191 YCTFRRLDPEENHTAELVIPELPLAHPP 218
Score = 44.6 bits (105), Expect = 9e-06
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 3/102 (2%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLK-DGRYLDNSAALSIT-HVDQYN 66
P V L C G + W D + L + + ++
Sbjct: 116 PYNKINQRILVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
++ ++ + + CT R + E+ L++ P
Sbjct: 175 NVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAH 216
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 68.3 bits (167), Expect = 3e-15
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFS 162
P + + GA IC P T+ W + L R +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-------N 61
Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
+L+I +V + +G Y C SN A + ++ L V+
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 65.2 bits (159), Expect = 4e-14
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 9 PPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
P ++ ++ G + IC+ T+ W + + +N
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN------GKLPSRAMDFNG 62
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
+L I +V +G Y CT NM A D L V V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 68.6 bits (168), Expect = 4e-15
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFSSLLSINSVSAAH 174
EG ++ C ++ PP + W ++ + + R + + + L I V+
Sbjct: 28 LEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT--LLIKDVNKKD 84
Query: 175 SGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
+G YT A N A +++L V P+ TL
Sbjct: 85 AGWYTVSAVNEAGVTTCNTRLDVTA-----RPNQTL 115
Score = 59.3 bits (144), Expect = 9e-12
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 8 VPPKLS--PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA-LSITHVDQ 64
P P + + + G+ L C I+ P + W ++ + + +S+ +
Sbjct: 14 RAPMFIYKPQS--KKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
L+I V+ + +G Y+ + N T RL V P
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 69.1 bits (168), Expect = 1e-14
Identities = 39/210 (18%), Positives = 64/210 (30%), Gaps = 56/210 (26%)
Query: 14 PTNPERTLNV-GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
N E +++ G L C + + +KW K+G+ L ++ LV+
Sbjct: 3 AENIEYKVSISGTSVELTCPLDSDE---NLKWEKNGQELPQK----------HDKHLVLQ 49
Query: 73 SVS-ARHSGNYSCTVRNMVAEDTQVQRLIV------------------------NVPPKI 107
S SG Y C + V
Sbjct: 50 DFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNK 109
Query: 108 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI 167
DG + CG+ TI+WLKDG +SP L++ + ++
Sbjct: 110 AKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISP--------LNATKNTWNL 157
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
+ + G Y C + S+ LQV
Sbjct: 158 GNNAKDPRGTYQCQGAK-----ETSNPLQV 182
Score = 43.3 bits (101), Expect = 1e-05
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 12/88 (13%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
K L C +T TIKWLKDG I+ ++ +
Sbjct: 107 TNKAKNLVQVDGSRGDGSVLLTCGLTD----KTIKWLKDGS--------IISPLNATKNT 154
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQV 96
+ + + G Y C + QV
Sbjct: 155 WNLGNNAKDPRGTYQCQGAKETSNPLQV 182
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.1 bits (164), Expect = 1e-14
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 175
+ + C T G P TI W KDG +S + + + + +L I +
Sbjct: 20 VAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKLGDT 74
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G YTC+AS + +A +S+ ++V+
Sbjct: 75 GRYTCIASTPSGEATWSAYIEVQE 98
Score = 64.8 bits (158), Expect = 8e-14
Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 4/110 (3%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S+ PP + +T+ V L C T G TI W KDG + S +
Sbjct: 5 SSGPPVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQD--SRIKQLE- 60
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD 115
N +L I +G Y+C E T + V P D
Sbjct: 61 NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 66.6 bits (163), Expect = 1e-14
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
EG + C V G P I WL +G+P+ + + L I G
Sbjct: 24 IEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTCEAGVAE----LHIQDALPEDHGT 78
Query: 178 YTCVASNTAAQARYSSKLQV 197
YTC+A N Q S+ + V
Sbjct: 79 YTCLAENALGQVSCSAWVTV 98
Score = 55.4 bits (134), Expect = 2e-10
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
V P S + + G+ L CS+ G I WL +G+ + + + + +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYA----RSTCEAGVA 64
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
L I G Y+C N + + + + V+
Sbjct: 65 ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 66.6 bits (163), Expect = 1e-14
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
+ GE S C ++ W G+ + +S+ T +LV+ + +
Sbjct: 19 EVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-QGRKYILVVREAAPSDA 77
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
G +VR + ++ LIV S
Sbjct: 78 GEVVFSVRGLTSKA----SLIVRERSGPSS 103
Score = 66.3 bits (162), Expect = 2e-14
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
EG C ++H W GK + + L+ + + + +GE
Sbjct: 21 LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV-VREAAPSDAGE 79
Query: 178 YTCVASNTAAQARYSSKLQVKG 199
++A L V+
Sbjct: 80 VVFSVRGLTSKA----SLIVRE 97
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 65.9 bits (161), Expect = 2e-14
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 101 VNVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVS 156
+ PP I P + L + C T GDP I WLK+G PR +
Sbjct: 5 SSGPPIILQG--PANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATI--- 58
Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
+ + L I ++ + +G YTCVA++++ + +S+ L V
Sbjct: 59 -QEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 55.5 bits (134), Expect = 2e-10
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Query: 6 STVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
S+ PP + P N +TL V A L C T GD I WLK+G +
Sbjct: 5 SSGPPIILQGPAN--QTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRD--PRATIQ 59
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
+ L I ++ +G Y+C + E + L V
Sbjct: 60 E-QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 70.4 bits (171), Expect = 4e-14
Identities = 30/231 (12%), Positives = 61/231 (26%), Gaps = 29/231 (12%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA----------- 56
+ + G +++C + + W +
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389
Query: 57 -----LSIT-HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESF 110
LS+ ++++ +++R +G Y C T V+ I+ P +
Sbjct: 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNL--K 447
Query: 111 AFPFDGLPEGARTRVICGVTH---GDPPLTIRWLKDGKPLSPRFP------VNVSDLDSF 161
G +V C +W G P D +S
Sbjct: 448 VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR 507
Query: 162 SSLLSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVKGNLNRLPPSYTLV 211
L++N V+ A G Y C ++ + V+ +L
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLA 558
Score = 68.1 bits (165), Expect = 2e-13
Identities = 31/216 (14%), Positives = 57/216 (26%), Gaps = 28/216 (12%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYL---------------DN 53
P L T+++G ++ C + K
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 54 SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFP 113
L I Q +VI+ + +G Y C + + + L V P +
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Query: 114 FDGLP--------EGARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFS 162
+ + +C + + GK R +N D D
Sbjct: 232 RGSVTFHCALGPEVANVAKFLCRQS-SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF 290
Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
S++ I + +G Y C A + S +
Sbjct: 291 SVV-ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQ 325
Score = 57.7 bits (138), Expect = 7e-10
Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 33/207 (15%)
Query: 23 VGERASLIC--SITKGDIPLTIKWLKDGRYLDNSAAL--------------SITHVDQYN 66
G S+ C T + W + G + ++T+ +
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 67 SMLV-IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
+ +V I +S SG Y C + + L V+ P + + + T +
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT-I 132
Query: 126 ICGVT-HGDPPLTIRWLKDGKPLSP--------------RFPVNVSDLDSFSSLLSINSV 170
C + + G R +++ + IN +
Sbjct: 133 NCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQL 192
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQV 197
+ +G+Y C A + + + ++ LQV
Sbjct: 193 RLSDAGQYLCQAGDDSNSNKKNADLQV 219
Score = 52.7 bits (125), Expect = 3e-08
Identities = 21/151 (13%), Positives = 35/151 (23%), Gaps = 13/151 (8%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLD------N 53
I T +GE + C KW G
Sbjct: 436 EIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGP 495
Query: 54 SAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAF 112
S A + L ++ V+ G Y C V+ + V S
Sbjct: 496 SKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555
Query: 113 PFDGLPEGARTRVICGVTHGDPPLTIRWLKD 143
L + + G + + ++D
Sbjct: 556 S---LAKADAAPDEKVLDSGFREIENKAIQD 583
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 64.8 bits (158), Expect = 5e-14
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
+ G ++ C + D +I WL+DG L ++ + + A SG
Sbjct: 21 VHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRITG-----EEVEVRDSIPADSG 73
Query: 177 EYTCVASNTAAQARYSSKLQV 197
Y CV S+ + + V
Sbjct: 74 LYACVTSSPSGSDTTYFSVNV 94
Score = 62.5 bits (152), Expect = 4e-13
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 8 VPPKLSPTNPE-RTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
P P E ++ G+ L C + D +I WL+DG L S IT
Sbjct: 7 AQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRIT-----G 59
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
+ + SG Y+C + DT + V
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 66.9 bits (163), Expect = 7e-14
Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 28/191 (14%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYL---------------DNSAALSITHVDQYNS 67
+GE +L G+ I WL + L N + Q +
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ-SY 70
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQ-VQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
L + ++ +G+Y + + I+ I+ +
Sbjct: 71 SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLT 130
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
C V D ++ RW G LS S +L + +YTC+A N
Sbjct: 131 CSVEDADDNVSFRWEALGNTLS-----------SQPNLTVSWDPRISSEQDYTCIAENAV 179
Query: 187 AQARYSSKLQV 197
+ +S Q
Sbjct: 180 SNLSFSVSAQK 190
Score = 46.1 bits (109), Expect = 2e-06
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 2 LVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH 61
L I + + + N+ L CS+ D ++ +W G L + L+++
Sbjct: 102 LRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW 161
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ 95
+ +S +Y+C N V+ +
Sbjct: 162 DPRISS-----------EQDYTCIAENAVSNLSF 184
Score = 30.7 bits (69), Expect = 0.27
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 18/91 (19%)
Query: 127 CGVTHGDPPLTIRWLKDGKPLS----------------PRFPVNVSDLDSFSSLLSINSV 170
G+ I WL + L+ P+ ++ S+S L ++++
Sbjct: 20 LEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYS--LQLSNL 77
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNL 201
+G Y S + S L++ L
Sbjct: 78 KMEDTGSYRAQISTKTSAKLSSYTLRILRQL 108
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 65.9 bits (160), Expect = 3e-13
Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 31/206 (15%)
Query: 23 VGERASLICSIT--KGDIPLTIKWLKDGR------YLD-------------NSAALSITH 61
VGE A L C + + +KW+ Y D ++
Sbjct: 18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDG 77
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAED---TQVQRLIVNVPPKIESFAFPFDGLP 118
+ + L I +V+A SG Y C ++ + +++ + ++ + G+
Sbjct: 78 ITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGI- 136
Query: 119 EGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
+ C T P I+W + G+ + V+D ++ + + +
Sbjct: 137 -----HLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNR 203
+C ++ ++ + + R
Sbjct: 192 VSCTIRSSLLGLEKTASISIADPFFR 217
Score = 35.1 bits (80), Expect = 0.013
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKD-GRYLDNSAALSITHVDQY 65
V S + + L C T I+W + G + A +
Sbjct: 116 KVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGL 175
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
++ + SCT+R+ + + + + P
Sbjct: 176 YAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 62.4 bits (152), Expect = 5e-13
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
GA + C V + W KDGK LS V V + L + A +GEY
Sbjct: 25 AGASATLSCEVAQ--AQTEVTWYKDGKKLSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEY 81
Query: 179 TCVASNTAAQARYSSKLQVKG 199
+C A +LQV G
Sbjct: 82 SCEAGGQQLSF----RLQVAG 98
Score = 56.3 bits (136), Expect = 1e-10
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
V K P + E G A+L C + + + W KDG+ L +S+ + +
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEVAQAQT--EVTWYKDGKKLSSSSKVRVEA-VGCTR 66
Query: 68 MLVIDSVSARHSGNYSCTVRN 88
LV+ +G YSC
Sbjct: 67 RLVVQQAGQAEAGEYSCEAGG 87
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 62.4 bits (152), Expect = 6e-13
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
+G + R+ + D ++WLK+G+ + + + L+I+ S A
Sbjct: 29 SKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86
Query: 178 YTCVASNTAAQARYSSKLQVK 198
Y CV L VK
Sbjct: 87 YQCVVGGEKCSTE----LFVK 103
Score = 51.2 bits (123), Expect = 6e-09
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P ++ G + L + D +KWLK+G+ + S + I
Sbjct: 16 TAFQKKLEPAYQVSKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 73
Query: 69 LVIDSVSARHSGNYSCTVRN 88
L I S Y C V
Sbjct: 74 LTISQCSLADDAAYQCVVGG 93
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 61.2 bits (149), Expect = 1e-12
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
G ++ P + +W G+PL SP + D +L +++ +G
Sbjct: 19 VGETAHFEIELSE--PDVHGQWKLKGQPLAASPDCEIIE---DGKKHILILHNCQLGMTG 73
Query: 177 EYTCVASNTAAQARYSSKLQVK 198
E + A+NT + A L+VK
Sbjct: 74 EVSFQAANTKSAAN----LKVK 91
Score = 53.1 bits (128), Expect = 1e-09
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
+ VGE A +++ D+ +W G+ L S I D +L++ + +
Sbjct: 16 EVFVGETAHFEIELSEPDV--HGQWKLKGQPLAASPDCEIIE-DGKKHILILHNCQLGMT 72
Query: 80 GNYSCTVRN 88
G S N
Sbjct: 73 GEVSFQAAN 81
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 63.1 bits (153), Expect = 1e-12
Identities = 24/182 (13%), Positives = 52/182 (28%), Gaps = 24/182 (13%)
Query: 23 VGERASLIC-SITKGDIPLTIKWLKDGRYL------DNSAALSITHVDQYNSMLVIDSVS 75
+G +L + D ++W + + S N L I +++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 76 ARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 135
SG Y+ TV + + L + + + P E + + C V G
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK---PMI-YWECSNATLTCEVLEGTDV 125
Query: 136 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 195
++ + + L +++ + C A N +Q +
Sbjct: 126 -ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 172
Query: 196 QV 197
Sbjct: 173 NC 174
Score = 40.7 bits (95), Expect = 9e-05
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 6/97 (6%)
Query: 126 ICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
I D +RW + + F + + + L I +++ SG Y
Sbjct: 18 IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77
Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQAS 216
+T + L ++ P S A+
Sbjct: 78 VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNAT 114
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 64.5 bits (156), Expect = 2e-12
Identities = 32/215 (14%), Positives = 63/215 (29%), Gaps = 23/215 (10%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQYN 66
P ++ VG+ +L C + G LT+ L+ + L A+ +
Sbjct: 86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG----EPAE 141
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAED--------TQVQRLIVNVPPKIESFAFPFDGLP 118
+ H N+SC + + +L V P L
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201
Query: 119 EGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+ V+C + G P + + L+P +D S + +S+ + +
Sbjct: 202 VDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSV-TAEDEGT 258
Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
TC + + + P+ L
Sbjct: 259 QRLTCAVILGNQSQETLQTVTIY---SFPAPNVIL 290
Score = 62.2 bits (150), Expect = 1e-11
Identities = 28/170 (16%), Positives = 48/170 (28%), Gaps = 15/170 (8%)
Query: 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
+ L G + CS T D P + + + N+ V + +
Sbjct: 7 SKVILPRGGSVLVTCS-TSCDQPKLLGI--------ETPLPKKELLLPGNNRKVYELSNV 57
Query: 77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP- 135
+ C + T L V P+ A P G + C V G P
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRA 117
Query: 136 -LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
LT+ L+ K L + + ++ H ++C
Sbjct: 118 NLTVVLLRGEKELKRE----PAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163
Score = 29.4 bits (65), Expect = 1.0
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 9/81 (11%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
LP G V C + P L K + + + +++V
Sbjct: 11 LPRGGSVLVTCSTSCDQPKLLGIETPLPK-------KELLLPGNNRKVYELSNVQ--EDS 61
Query: 177 EYTCVASNTAAQARYSSKLQV 197
+ C ++ Q+ + L V
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTV 82
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 60.4 bits (147), Expect = 2e-12
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
L G+ + C G P +W K+ PL+ L + V H G
Sbjct: 15 LMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT----------HETKKLYMVPYVDLEHQG 63
Query: 177 EYTCVASNTA 186
Y C N
Sbjct: 64 TYWCHVYNDR 73
Score = 60.0 bits (146), Expect = 3e-12
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
++ + L G L C G +W K+ L + +
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT----------HETKKL 51
Query: 69 LVIDSVSARHSGNYSCTVRNMVAE-DTQVQRLIVNVPP 105
++ V H G Y C V N D++ +I++
Sbjct: 52 YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 60.9 bits (148), Expect = 2e-12
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+ C V+ +T +W K+G + S R ++ L I+ V
Sbjct: 21 KAAEQAVFKCEVSD--EKVTGKWYKNGVEVRPSKRITISH---VGRFHKLVIDDVRPEDE 75
Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
G+YT V A S+KL
Sbjct: 76 GDYTFVPDGYALSL--SAKLNFL 96
Score = 57.4 bits (139), Expect = 4e-11
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+ E+A C ++ + KW K+G + S ++I+H LVID V
Sbjct: 19 TVKAAEQAVFKCEVSDEKVT--GKWYKNGVEVRPSKRITISH-VGRFHKLVIDDVRPEDE 75
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
G+Y+ + +L
Sbjct: 76 GDYTFVPDGYALSLS--AKLNFLEIKVSG 102
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 60.9 bits (148), Expect = 2e-12
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 5 FSTVPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
S+ P + + +L ER L C +++ D P W KDG+ ++ S L +
Sbjct: 4 GSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKM- 60
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
D L++ + SG + C + + V P S
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRTEG----VSAFFGVTVQDPSGPSS 103
Score = 60.1 bits (146), Expect = 4e-12
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
R + C ++ D P W KDG+ + + V L+ + SGE+
Sbjct: 24 TSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKMDGRKHRLI-LPEAKVQDSGEF 80
Query: 179 TCVASNTAAQAR 190
C +A
Sbjct: 81 ECRTEGVSAFFG 92
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 63.4 bits (154), Expect = 2e-12
Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 19/195 (9%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
+ C + + +K+ Y + L + VID + A +G Y
Sbjct: 23 DGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE--FVIDHMDANKAGRYQ 80
Query: 84 CTVRNMV--AEDTQVQRLIVNVPPKIESF-AFPFDGLPEGARTRVICGVTHGDPPLTIRW 140
C R + L+V A L G + C + P
Sbjct: 81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCS-SAHIPFDRFSL 139
Query: 141 LKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-----KL 195
K+G+ P+ + S+ V SG Y C + +S +L
Sbjct: 140 AKEGELSLPQHQSG-----EHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALEL 194
Query: 196 QVKGNLNRLPPSYTL 210
V + + YT
Sbjct: 195 VVTDS---IHQDYTT 206
Score = 44.5 bits (105), Expect = 7e-06
Identities = 15/103 (14%), Positives = 29/103 (28%), Gaps = 2/103 (1%)
Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 164
P A +P ++ C + +K+ + +
Sbjct: 8 PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE-- 65
Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
I+ + A +G Y C + RYS L++ P
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPF 108
Score = 40.2 bits (94), Expect = 2e-04
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
++V P LS + L GE SL CS + K+G +L
Sbjct: 98 LVVTGLYGKPFLSA-DRGLVLMPGENISLTCS-SAHIPFDRFSLAKEGE-----LSLPQH 150
Query: 61 HVDQYNSMLVIDSVSARHSGNYSC 84
++ + + V SG Y C
Sbjct: 151 QSGEHPANFSLGPVDLNVSGIYRC 174
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 60.4 bits (147), Expect = 3e-12
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S+ P + ++ + GE L C +++ P + WLKD + + S + +
Sbjct: 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVC-EGT 61
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+MLVI S + +G Y+C V + L V
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTA----SLHVEEKA 97
Score = 60.0 bits (146), Expect = 4e-12
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
G + C ++ P + WLKD K + S ++ V + L I S +
Sbjct: 21 APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGASLKDA 75
Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
GEYTC + + A L V+ + P S
Sbjct: 76 GEYTCEVEASKSTAS----LHVEEKASG-PSS 102
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 61.2 bits (148), Expect = 4e-12
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 13/94 (13%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------------RFPVNVSDLDSFSSLL 165
G + C G P I+W +G+ + R ++ + +S +
Sbjct: 34 WVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92
Query: 166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
SI+++ +G Y C ASN + + +VK
Sbjct: 93 SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKW 126
Score = 52.7 bits (126), Expect = 4e-09
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 17/114 (14%)
Query: 2 LVIFSTVPPKL--SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAA--- 56
LV + +P + + VG L C G I+W +G+ ++ +
Sbjct: 14 LVPRGSHMAGFVQAPLS--QQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLW 70
Query: 57 ---------LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
+ T+ S + ID++ +G Y C N + + V
Sbjct: 71 DGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 60.5 bits (147), Expect = 4e-12
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
EG+ C ++ + W D PL + +L++ ++ SG
Sbjct: 27 EGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85
Query: 179 TCVASNTAAQARYSSKLQVKGN---LNRLPPS 207
A + A A L+V +R PS
Sbjct: 86 YFEAGDQRASAA----LRVTEKPSVFSRSGPS 113
Score = 55.9 bits (135), Expect = 2e-10
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
+ G A+ C I+ + + W D L + I +L + ++ + S
Sbjct: 24 DVQEGSSATFRCRISPANYE-PVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDS 82
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDG 116
G + A L V P + S + P G
Sbjct: 83 GTIYFEAGDQRAS----AALRVTEKPSVFSRSGPSSG 115
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 60.0 bits (146), Expect = 4e-12
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
G R + C V+ ++W K+G+ + P+ + L+ I + A +
Sbjct: 21 CGERVELECEVSE--DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI-IEGATKADAA 77
Query: 177 EYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
EY+ + + + A KL V + PS
Sbjct: 78 EYSVMTTGGQSSA----KLSVDL---KSGPS 101
Score = 51.6 bits (124), Expect = 5e-09
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT-HVDQYNSMLVIDSVSARH 78
T GER L C +++ D +KW K+G + V+ +L+I+ +
Sbjct: 18 TAYCGERVELECEVSEDDA--NVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 75
Query: 79 SGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
+ YS +L V++ S
Sbjct: 76 AAEYSVMTTG----GQSSAKLSVDLKSGPSS 102
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 59.7 bits (145), Expect = 4e-12
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
+G R R + + DP L ++W K+G+ + P L IN+ E
Sbjct: 21 DKGGRVRFVVEL--ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF-INNCQMTDDSE 77
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
Y A + L V+ PS
Sbjct: 78 YYVTAGDEKCSTE----LFVRS-----GPS 98
Score = 57.0 bits (138), Expect = 4e-11
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S+ +P ++ G R + + + +KW K+G+ + S H
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVELADPKL--EVKWYKNGQEIRPSTKYIFEH-KGC 61
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+L I++ Y T + L V P
Sbjct: 62 QRILFINNCQMTDDSEYYVTAGDEKCS----TELFVRSGP 97
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 63.4 bits (154), Expect = 5e-12
Identities = 35/211 (16%), Positives = 60/211 (28%), Gaps = 17/211 (8%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSIT 60
++++ +P + GER L C K+G D S +
Sbjct: 110 VIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM--FEHFFLHKEGISKDPSRLVGQI 167
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR-----LIVNVPPKIESF-AFPF 114
H + I + +G Y C ++V P + S A P
Sbjct: 168 HDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG 227
Query: 115 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 174
+ G + C ++G R P +F + + + H
Sbjct: 228 PKVQAGESVTLSCSSR--SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--H 283
Query: 175 SGEYTCVASNTAAQARYSSK-----LQVKGN 200
G Y C S + +S + V GN
Sbjct: 284 GGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314
Score = 61.8 bits (150), Expect = 2e-11
Identities = 33/175 (18%), Positives = 52/175 (29%), Gaps = 15/175 (8%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
G +L C K+ R + I H + + V+ H+GNY+
Sbjct: 38 GGHVTLRCHYRHR--FNNFMLYKEDRIH-----IPIFHGRIFQESFNMSPVTTAHAGNYT 90
Query: 84 CTVRNMVAEDT------QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 137
C + + V ++ K A P + G R + C
Sbjct: 91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM--FEH 148
Query: 138 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192
K+G P V + SI + A +G Y C S T + S
Sbjct: 149 FFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLS 203
Score = 37.9 bits (88), Expect = 0.002
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 192
K+ + P F + +++ V+ AH+G YTC S+ + +S
Sbjct: 49 HRFNNFMLYKEDRIHIPIFHGRIFQ-----ESFNMSPVTTAHAGNYTCRGSHPHSPTGWS 103
Query: 193 SK 194
+
Sbjct: 104 AP 105
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 58.9 bits (143), Expect = 1e-11
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 11/84 (13%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSAAH 174
G R + V+ + W+K+G L+ + L+ + V
Sbjct: 22 VGDRVEMAVEVSE--EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILI-FSDVVQED 78
Query: 175 SGEYTCVASNTAAQARYSSKLQVK 198
G Y + + +A +L V+
Sbjct: 79 RGRYQVITNGGQCEA----ELIVE 98
Score = 51.2 bits (123), Expect = 7e-09
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH---V 62
S+ P + ++ + VG+R + +++ + W+K+G L + +
Sbjct: 5 SSGPVLIVTPLEDQQVFVGDRVEMAVEVSEE--GAQVMWMKNGVELTREDSFKARYRFKK 62
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRN 88
D +L+ V G Y
Sbjct: 63 DGKRHILIFSDVVQEDRGRYQVITNG 88
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 59.1 bits (143), Expect = 1e-11
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 101 VNVPPKIESFAFPFDGL-PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
+ PP+I P D + +G + C G P TI W K G+ + S
Sbjct: 6 EDFPPRIVEH--PSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRM 62
Query: 160 SFS--SLLSIN----SVSAAHSGEYTCVASNTAAQAR-YSSKLQVKG 199
SL + S G Y CVA N +A + + L+V
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
Score = 53.3 bits (128), Expect = 2e-09
Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
PP++ + ++ GE A+L C G TI+W K G ++ +H S
Sbjct: 8 FPPRIVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPS 66
Query: 68 ------MLVIDSVSARHSGNYSCTVRNMVAED-TQVQRLIVNVPPKIES 109
+V S G Y C RN + E + L V
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 61.5 bits (149), Expect = 2e-11
Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 20/213 (9%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNS 67
P L +P + E L C D+ L ++G++ D + H +
Sbjct: 7 KPSLL-AHPGPLVKSEETVILQCW---SDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKA 62
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDT------QVQRLIVNVPPKIESFAFPFDGLPEGA 121
I + +G Y C + + +I + K A P + G
Sbjct: 63 NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGE 122
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
+ C ++G+ RF +F + + + H G Y C
Sbjct: 123 SVTLSCSS--RSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCF 178
Query: 182 ASNTAAQARYSS-----KLQVKGNLNRLPPSYT 209
S + +S+ + V GN + PS T
Sbjct: 179 GSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPT 211
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 59.0 bits (142), Expect = 2e-11
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 11 KLSPTNPERTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN--- 66
LSP++ L+VGE+ L C+ + ++ + W + ++ Q
Sbjct: 11 VLSPSHG-IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69
Query: 67 ----SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
S L ID V+ G Y+C + + + V+ P +
Sbjct: 70 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 115
Score = 54.7 bits (131), Expect = 6e-10
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 16/113 (14%)
Query: 95 QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPV 153
++ ++++ IE L G + + C + + W + V
Sbjct: 6 RIYDVVLSPSHGIE--------LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 57
Query: 154 NVSDLDS-------FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
N F S L+I+ V+ + G YTC AS+ + S+ ++V
Sbjct: 58 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 57.7 bits (140), Expect = 2e-11
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
G+ + +RW + G + S ++ + + L++ V A
Sbjct: 21 AAGSPAVFEAETER--AGVKVRWQRGGSDISASNKYGLAT---EGTRHTLTVREVGPADQ 75
Query: 176 GEYTCVASNTAAQARYSSKLQVK 198
G Y +A ++ + L+V
Sbjct: 76 GSYAVIAGSSKVKFD----LKVI 94
Score = 51.2 bits (123), Expect = 6e-09
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
+ G A + + ++W + G + S + + L + V
Sbjct: 19 EVAAGSPAVFEAETERA--GVKVRWQRGGSDISASNKYGLAT-EGTRHTLTVREVGPADQ 75
Query: 80 GNYSCTVRN 88
G+Y+ +
Sbjct: 76 GSYAVIAGS 84
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 60.1 bits (145), Expect = 2e-11
Identities = 26/179 (14%), Positives = 41/179 (22%), Gaps = 12/179 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + G L CS T P + S + T
Sbjct: 2 PFWADLQPRVAFVERGGSLWLNCS-TNCPRPERGGL-------ETSLRRNGTQRGLRWLA 53
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
+ + C R + P P G + C
Sbjct: 54 RQLVDIRE-PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCR 112
Query: 129 VTHGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
V P LT+ L+ + L R F ++ + H ++C A
Sbjct: 113 VPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAEL 171
Score = 37.0 bits (85), Expect = 0.002
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGD--IPLTIKWLKDGRYLDNSAALSITHVDQY 65
P ++ VGE +L C + LT+ L+ + L + +
Sbjct: 88 RPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARG 147
Query: 66 NSMLVIDSVSARHSG-NYSCTVRN 88
+ G N+SC
Sbjct: 148 AVLTATVLARREDHGANFSCRAEL 171
Score = 28.9 bits (64), Expect = 1.1
Identities = 4/82 (4%), Positives = 13/82 (15%), Gaps = 11/82 (13%)
Query: 117 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
+ G + C P + + +
Sbjct: 14 VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQR---------GLRWLARQLVDIRE-PE 63
Query: 176 GEYTCVASNTAAQARYSSKLQV 197
+ C + ++
Sbjct: 64 TQPVCFFRCARRTLQARGLIRT 85
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 60.0 bits (145), Expect = 3e-11
Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 21/185 (11%)
Query: 23 VGERASLICSITKGD---IPLTIKWLKDGRYLDNSAALSITHVDQY----------NSML 69
V E A+L C I W K+ + + + + +Y N +
Sbjct: 8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSI 67
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDT---QVQRLIVNVPPKIESFAFPFDGLPEGARTRVI 126
VI ++ G Y C V + + + ++V + + +P R+I
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRII 127
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINS---VSAAHSGEYTCVAS 183
C + G P + WL++G+ L+ D + + L +++S + + + C+
Sbjct: 128 CSTSGGFPEPHLSWLENGEELNAINTTVSQDPE--TELYAVSSKLDFNMTTNHSFMCLIK 185
Query: 184 NTAAQ 188
+
Sbjct: 186 YGHLR 190
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 57.9 bits (140), Expect = 3e-11
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 103 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLD 159
V I + R + C + P +RW KDG+ + SP + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVESPALLLQK---E 64
Query: 160 SFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
L + +V SGEY C + +A
Sbjct: 65 DTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95
Score = 55.2 bits (133), Expect = 3e-10
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 8 VPPKLSPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
V + + + + ER L C + + ++W KDG + S AL + +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA--EVRWTKDGEEVVESPALLLQK-EDT 66
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
LV+ +V SG Y C + + ++ + V PP
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPP 102
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 59.1 bits (143), Expect = 4e-11
Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 38/183 (20%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDG-----RYLDNSAALSI-------THVDQYNSMLV 70
G +L + WL Y N +D+ N L
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 71 IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP---PKIESFAFPFDGLPEGARTRVIC 127
I +VS G+Y + + + ++ + V P I E + + C
Sbjct: 73 IYNVSKEDRGDYYMRMLHETEDQWKIT-MEVYEMVSKPMIYW---------ECSNATLTC 122
Query: 128 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 187
V G ++ + + L +++ + C A N +
Sbjct: 123 EVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNRVS 169
Query: 188 QAR 190
Q
Sbjct: 170 QES 172
Score = 39.1 bits (91), Expect = 4e-04
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
+ P A+L C + +G +K + +L + ++++
Sbjct: 106 VSKPMIYWE-CSNATLTCEVLEGTDV-ELKLYQGKEHLRSLRQKTMSYQ----------- 152
Query: 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
+ C N V++++++ +VN P
Sbjct: 153 -WTNLRAPFKCKAVNRVSQESEM--EVVNCP 180
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 59.5 bits (143), Expect = 6e-11
Identities = 42/206 (20%), Positives = 62/206 (30%), Gaps = 39/206 (18%)
Query: 23 VGERASLICSIT------KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM-------- 68
G + CS + PL + W +DG + ++ + D+
Sbjct: 14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL 73
Query: 69 ----------LVIDSVSARHSGNYSCTVRNMVAE--DTQVQRLIVNVPPKIESFAFPFDG 116
L I +G+Y V Q +L + V IE F
Sbjct: 74 LGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE 133
Query: 117 -LPEGARTRVICGVTH---GDPPLTIRWLKDG-KPLSPRFPVNVSDLDSFSSLLSINSVS 171
L G TR+ C + PPLT W + PL P SS L++
Sbjct: 134 PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--------SSELTLTPRP 185
Query: 172 AAHSGEYTCVASNTAAQARYSSKLQV 197
H TC AQ +Q+
Sbjct: 186 EDHGTNLTCQMKRQGAQVTTERTVQL 211
Score = 39.0 bits (90), Expect = 5e-04
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAAL 57
L + T + + L G L CS+ + PLT W + +
Sbjct: 115 KLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT 174
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
+S L + H N +C ++ A+ T + + +NV
Sbjct: 175 R-------SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 56.6 bits (137), Expect = 6e-11
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 15/92 (16%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
G + C ++ + P +W K+G P+ S R V L I +
Sbjct: 20 NLGKEICLKCEIS-ENIP--GKWTKNGLPVQESDRLKVVQKGRIHK---LVIANALTEDE 73
Query: 176 GEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
G+Y +K+ V PS
Sbjct: 74 GDYVFAPDAYNVTL--PAKVHVIS-----GPS 98
Score = 56.2 bits (136), Expect = 1e-10
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
T+N+G+ L C I+ +IP KW K+G + S L + LVI +
Sbjct: 18 TVNLGKEICLKCEIS-ENIP--GKWTKNGLPVQESDRLKVVQ-KGRIHKLVIANALTEDE 73
Query: 80 GNYSCTVRNMVAEDTQVQRLIVNVPP 105
G+Y T ++ V P
Sbjct: 74 GDYVFAPDA--YNVTLPAKVHVISGP 97
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 56.6 bits (137), Expect = 7e-11
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
E C H P T+ W K L S + + L+I+++ A S
Sbjct: 21 EEKGTAVFTCKTEH--PAATVTWRKGLLELRASGKHQPSQ-EGLTLRLTISALEKADSDT 77
Query: 178 YTCVASNTAAQARYSSKLQVKG 199
YTC ++A+ L V+G
Sbjct: 78 YTCDIGQAQSRAQ----LLVQG 95
Score = 48.9 bits (117), Expect = 5e-08
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S+ + + A C T+ W K L S + +
Sbjct: 5 SSGANCFTEELTNLQVEEKGTAVFTCKTEHPAA--TVTWRKGLLELRASGKHQPSQ-EGL 61
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPP 105
L I ++ S Y+C Q + +L+V
Sbjct: 62 TLRLTISALEKADSDTYTC-----DIGQAQSRAQLLVQGRR 97
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 55.8 bits (135), Expect = 1e-10
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
EGA + C ++ + W K + L R+ + D L I+ +S A +
Sbjct: 21 SEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQ---DGTRCELQIHDLSVADA 74
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
GEY+C+ A L V+
Sbjct: 75 GEYSCMCGQERTSAT----LTVRA 94
Score = 53.5 bits (129), Expect = 9e-10
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
S+ P + + + + G A+L C ++K ++W K L + S+ D
Sbjct: 5 SSGPARFTQDLKTKEASEGATATLQCELSK---VAPVEWKKGPETLRDGGRYSLKQ-DGT 60
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
L I +S +G YSC + L V P
Sbjct: 61 RCELQIHDLSVADAGEYSCMCGQ----ERTSATLTVRALP 96
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 57.9 bits (140), Expect = 1e-10
Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 18/187 (9%)
Query: 24 GERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
G +L C G L ++ + I I S++ H+G Y
Sbjct: 19 GSPVTLRCQ---GGQETQEYRLYREKK--TAPWITRIPQELVKKGQFPIPSITWEHTGRY 73
Query: 83 SCTVRNMVAEDTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
C + A ++ ++ ++ K A P + G + C
Sbjct: 74 RCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS--QVAFDGF 131
Query: 139 RWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS---- 193
K+G+ P+ + S ++ S+ VS + Y C A ++ + +S
Sbjct: 132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDL 191
Query: 194 -KLQVKG 199
+L V G
Sbjct: 192 LELLVLG 198
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 58.0 bits (140), Expect = 1e-10
Identities = 31/191 (16%), Positives = 58/191 (30%), Gaps = 15/191 (7%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNS 67
P L +P + E L C D+ L ++G + D + H +
Sbjct: 8 KPSLL-AHPGPLVKSEETVILQCW---SDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDT------QVQRLIVNVPPKIESFAFPFDGLPEGA 121
I ++ +G Y C + + +I+ + K A P + G
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123
Query: 122 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
+ C ++G+ R P +F + + + H G Y C
Sbjct: 124 NVTLSCSSR--SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCF 179
Query: 182 ASNTAAQARYS 192
S + +S
Sbjct: 180 GSFHDSPYEWS 190
Score = 40.7 bits (95), Expect = 1e-04
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 111 AFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSLLSINS 169
A P + + C D L ++G + + SI+
Sbjct: 13 AHPGPLVKSEETVILQC---WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69
Query: 170 VSAAHSGEYTCVASNTAAQARYSSK 194
++ +G Y C S T + + S+
Sbjct: 70 MTQDLAGTYRCYGSVTHSPYQVSAP 94
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 55.4 bits (134), Expect = 2e-10
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 11/84 (13%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 175
EG + C ++ ++W L ++ + + L + ++ S
Sbjct: 21 LEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQ---EGAMLELVVRNLRPQDS 75
Query: 176 GEYTCVASNTAAQARYSSKLQVKG 199
G Y+C + A L V
Sbjct: 76 GRYSCSFGDQTTSAT----LTVTA 95
Score = 53.9 bits (130), Expect = 8e-10
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHS 79
+ G A+L C ++ + +KW L S+ + LV+ ++ + S
Sbjct: 19 EVLEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQ-EGAMLELVVRNLRPQDS 75
Query: 80 GNYSCTVRNMVAEDTQVQ-RLIVNVPPK 106
G YSC D L V P
Sbjct: 76 GRYSC-----SFGDQTTSATLTVTALPS 98
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 57.6 bits (138), Expect = 2e-10
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 13/194 (6%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P ++ P P + +G L C + D +++W LD S L D S+
Sbjct: 7 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRG----LDTS--LGAVQSDTGRSV 60
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICG 128
L + + S +G C +L+V P L G V C
Sbjct: 61 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFP--NQLTVSPAALVPGDPE-VACT 117
Query: 129 VTHGDPP----LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
P L+ L G+ L + + V + +
Sbjct: 118 AHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLG 177
Query: 185 TAAQARYSSKLQVK 198
T + ++
Sbjct: 178 TPVPPALYCQATMR 191
Score = 49.5 bits (117), Expect = 2e-07
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 95 QVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 154
QV+ L V P P + GA ++ C + D +++W L
Sbjct: 4 QVKPLQVEPPE-------PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG------ 50
Query: 155 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
D+ S+L++ + S + +G CV S +++ +L V
Sbjct: 51 AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 55.9 bits (134), Expect = 3e-10
Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 37/129 (28%)
Query: 103 VPPKIESFAFPFDGLP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS 156
PPKI +P G + R+ ++ GDP T+ W K +
Sbjct: 12 EPPKIH--LDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAP 68
Query: 157 DL----------------------------DSFSSLLSINSVSAAHSGEYTCVASNTAAQ 188
D S+ ++ G YT N +
Sbjct: 69 DAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE 128
Query: 189 ARYSSKLQV 197
+ + ++V
Sbjct: 129 DQVNLTVKV 137
Score = 55.1 bits (132), Expect = 6e-10
Identities = 25/127 (19%), Positives = 39/127 (30%), Gaps = 34/127 (26%)
Query: 8 VPPKL---SPTNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHV 62
PPK+ P T+ V G + L I+ GD T+ W K + + A
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAPDA 70
Query: 63 DQ----------------------------YNSMLVIDSVSARHSGNYSCTVRNMVAEDT 94
+ S+ ++ G Y+ TV+N V ED
Sbjct: 71 PEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQ 130
Query: 95 QVQRLIV 101
+ V
Sbjct: 131 VNLTVKV 137
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 57.9 bits (140), Expect = 5e-10
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 14/165 (8%)
Query: 43 KWLKDGRYLDNSAALSITHVDQYNSML------VIDSVSARHSGNYSCTVRNMVAEDTQV 96
WL G + + + + + + + + ++R ++ +
Sbjct: 412 PWLTPGNAPGRDSQIPSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSI 471
Query: 97 QRLIVNVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFP 152
+ + F G EG C V P + W KD + L S ++
Sbjct: 472 RDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKY- 529
Query: 153 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
+ + L+IN V GEYT A N+ L V
Sbjct: 530 --MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 51.4 bits (123), Expect = 7e-08
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P+ + G+ A+ C + P + W KD R L S + +
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPP-VVTWHKDDRELKQSVKYMKRYNGN-DYG 539
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV 101
L I+ V G Y+ +N ++ L V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 58.3 bits (140), Expect = 5e-10
Identities = 21/158 (13%), Positives = 45/158 (28%), Gaps = 14/158 (8%)
Query: 33 ITKGDIPLTIKWLKDGRYLD--NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMV 90
W G N A L+I+ ++ + +++ H G +
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAI------ 152
Query: 91 AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-- 148
++ +V P + G C G R G +
Sbjct: 153 -DEVKVLGHPCTRTPHFLRIQNV--EVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDA 208
Query: 149 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
P + V+ F + ++ + + +G+Y C+
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246
Score = 44.0 bits (103), Expect = 3e-05
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 10/129 (7%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM--LVIDSVSAR 77
+N G+ A+ CS G + G + ++ I + + + + R
Sbjct: 175 EVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 233
Query: 78 HSGNYSCTVRNMVAEDT-QVQRLIVNVPPKIESFAFPFDGLPEGARTRVI---CGVTHGD 133
+G Y C +R L+V PP + P GA I +GD
Sbjct: 234 DAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA---PPQLASVGATYLWIQLNANSINGD 290
Query: 134 PPLTIRWLK 142
P+ R ++
Sbjct: 291 GPIVAREVE 299
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 54.3 bits (131), Expect = 6e-10
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
EGA + C ++ P + W K + L R + D L I + A +G
Sbjct: 33 EGATAVLRCELS-KMAP--VEWWKGHETLRDGDRHSLRQ---DGARCELQIRGLVAEDAG 86
Query: 177 EYTCVASNTAAQARYSSKLQVKG 199
EY C+ A L V+
Sbjct: 87 EYLCMCGKERTSAM----LTVRA 105
Score = 53.1 bits (128), Expect = 2e-09
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 8/98 (8%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNS 67
+P K + G A L C ++K ++W K L + S+ D
Sbjct: 18 LPIKFTEGLRNEEATEGATAVLRCELSK---MAPVEWWKGHETLRDGDRHSLRQ-DGARC 73
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
L I + A +G Y C + L V P
Sbjct: 74 ELQIRGLVAEDAGEYLCMCGK----ERTSAMLTVRAMP 107
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 57.5 bits (139), Expect = 7e-10
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + + + G A L C ++ W+ + A + +
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
L +V+ + +G Y+C V N V T L V
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
Score = 51.3 bits (123), Expect = 9e-08
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSV 170
+ EG + C ++ W+ + R V L+ +V
Sbjct: 353 VTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSD------GTLNFTNV 404
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLP 205
+ +G YTC+ SN+ S+ L V G +
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 55.2 bits (133), Expect = 1e-09
Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)
Query: 24 GERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNY 82
G ++ C G + L K+ + ++ I S++ ++G Y
Sbjct: 19 GNSVTIWCQ---GTLEAREYRLDKEESPAPWDRQNPLEPKNKAR--FSIPSMTEDYAGRY 73
Query: 83 SCTVRNMVAEDTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 138
C R+ +Q ++ ++ K A P + G ++C P T
Sbjct: 74 RCYYRSP-VGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS--RSPMDTF 130
Query: 139 RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS----- 193
K+ + + ++ V++ H G Y C +S+ + S
Sbjct: 131 LLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPL 190
Query: 194 KLQVKG 199
+L V G
Sbjct: 191 ELIVSG 196
Score = 34.0 bits (78), Expect = 0.022
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 129 VT---HGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
VT G R K+ P + + + SI S++ ++G Y C +
Sbjct: 22 VTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNK--ARFSIPSMTEDYAGRYRCYYRS 79
Query: 185 TAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
++ S L++ P+ + + S
Sbjct: 80 PVGWSQPSDPLELVMTGAYSKPTLSALPSP 109
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 56.6 bits (137), Expect = 1e-09
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 5 FSTVPPKLSPTNPER-TLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
F+ ++ ++ ++ G +C GD P I WL ++L ++ + V
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVF 438
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
+ L + + +G Y C N D+ L V
Sbjct: 439 P-DGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 52.4 bits (126), Expect = 4e-08
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFS 162
+I + EG + +C GDPP I WL +S + ++
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440
Query: 163 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
L + +G Y C+A+N + L V+
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 56.0 bits (135), Expect = 2e-09
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 3/94 (3%)
Query: 13 SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
++G+ ++ C TK + + + + V N L
Sbjct: 250 EYKESAWEAHLGDTLTIRCD-TKQQGMTKVWVSPSNEQVLSQGSNGSVSVR--NGDLFFK 306
Query: 73 SVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
V G Y+C +T L V
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFTL 340
Score = 51.0 bits (122), Expect = 1e-07
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 177
G + C + + + + + + L V G
Sbjct: 259 HLGDTLTIRCDTK-QQGMTKVWVSPSNEQVLS--QGSNGSVSVRNGDLFFKKVQVEDGGV 315
Query: 178 YTCVASNTAAQARYSSKLQVKG 199
YTC A S +L+V
Sbjct: 316 YTCYAMGETFNETLSVELKVYN 337
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 55.7 bits (134), Expect = 2e-09
Identities = 33/207 (15%), Positives = 57/207 (27%), Gaps = 18/207 (8%)
Query: 3 VIFSTVPPKLSPTNPERTLNVGERASLICSITKG-DIPLTIKWLKDGRYLDNSAALSITH 61
+ P + P S C +T+KW K+G L S +
Sbjct: 111 LSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL--SDFQTNVD 168
Query: 62 VDQYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP---PKIESFAF 112
+ S + C V + V R N+ +
Sbjct: 169 PVGESVSYSIHSTAKVVLTREDVHSQVICEVAH-VTLQGDPLRGTANLSETIRVPPTLEV 227
Query: 113 PFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSI 167
+ + V C V P L + WL++G V++ ++ S L +
Sbjct: 228 TQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLV 287
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSK 194
N + + TC + A S
Sbjct: 288 NVSAHRDDVKLTCQVEHDGQPAVSKSH 314
Score = 43.0 bits (101), Expect = 4e-05
Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 31/223 (13%)
Query: 15 TNPERTLNV--GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVID 72
P+++++V GE A L C++T I+W + + L + + +
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAG---PARELIYNQKEGHFPRVTTV 63
Query: 73 SVSARHSGN-YSCTVRNMVAEDT--------------------QVQRLIVNVPPKIESFA 111
S S + +S ++ N+ D L V P +
Sbjct: 64 SESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS 123
Query: 112 FPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLS 166
P C P +T++W K+G LS PV S S S
Sbjct: 124 GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAK 183
Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYT 209
+ + C ++ Q R+PP+
Sbjct: 184 VVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLE 226
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 52.0 bits (124), Expect = 5e-09
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 15 TNPE-RTLNVGERASLICSIT-KGDIPLTIKWLKDGRYLDNSAALSITHVD-------QY 65
PE ++ G S CS D P+T W D L ++ + H+ +Y
Sbjct: 15 VQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEY 74
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDT-QVQRLIVN 102
++L + +V G Y C + N L +N
Sbjct: 75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
Score = 48.5 bits (115), Expect = 8e-08
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 120 GARTRVICGVT-HGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLSINSVS 171
G+ C D P+T W D + L +L ++++L + +V
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84
Query: 172 AAHSGEYTCVASNTA 186
G Y CV SN
Sbjct: 85 FTSEGXYQCVISNHF 99
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 55.1 bits (133), Expect = 5e-09
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + + ++ G A L C + ++KWL + + A+ +
Sbjct: 352 APFIMDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
L V +G Y+C V N+ L V+
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 52.4 bits (126), Expect = 3e-08
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSV 170
+ EG + C P +++WL + PR V L+ + V
Sbjct: 364 ISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLND------GTLNFSHV 414
Query: 171 SAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSY 208
+ +G YTC+ +N A + S+ L V +
Sbjct: 415 LLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHHHH 452
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 54.1 bits (130), Expect = 5e-09
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 18/205 (8%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + P + ++ ++ C G + + +G +++
Sbjct: 7 KPFIW-AEPHFMVPKEKQVTICCQGNYGAV--EYQLHFEGSLFAVDRPKPPERINKVK-- 61
Query: 69 LVIDSVSARHSGNYSCTVRNMV---AEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRV 125
I +++R +G YSC R + ++ + P + G +
Sbjct: 62 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 121
Query: 126 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 185
C + LK+G+ + + + V+ AH G Y C S
Sbjct: 122 YCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 174
Query: 186 AAQARYSS---KLQVKGNLNRLPPS 207
+ S KL V G++ +
Sbjct: 175 NHAWSFPSEPVKLLVTGDIENTSLA 199
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 51.5 bits (123), Expect = 8e-09
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 118 PEGARTRVICGVTHGDPPL---TIRWLKDGK---PLSPRFPVNVSDLDSFSSL-----LS 166
G I V + L TI+W K + + + S +
Sbjct: 20 KVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78
Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
I +G Y C + S L+V
Sbjct: 79 IIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
Score = 51.5 bits (123), Expect = 8e-09
Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 20 TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAA-----LSITH---VDQYNSML 69
T+ VGE + I + D+ TIKW K S A L T Y +
Sbjct: 18 TVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEM 77
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIE 108
I +GNY C V D+ L V+
Sbjct: 78 QIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 53.5 bits (128), Expect = 1e-08
Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 21/224 (9%)
Query: 6 STVPPKLSPTNP--ERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITH 61
PP + + + L+C ++ G P + I WL+DG+ +D + + T
Sbjct: 4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVS-GYTPGTIQITWLEDGQVMDVDLSTASTT 62
Query: 62 VD----QYNSMLVIDSVSARHSGNYSCTVR---NMVAEDTQVQRLIVNVPPKIESFAFPF 114
+ S L + Y+C V + + T+
Sbjct: 63 QEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSP 122
Query: 115 DGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLS 166
L + C + + + W + + +S L
Sbjct: 123 FDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH-STRKEEKQRNGTLTVTSTLP 181
Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
+ + Y C ++ P Y
Sbjct: 182 VGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAF 225
Score = 40.0 bits (93), Expect = 3e-04
Identities = 28/196 (14%), Positives = 57/196 (29%), Gaps = 24/196 (12%)
Query: 9 PPKLSPTNP-ERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
+ P L + + ++ C + + + W + N + + Q
Sbjct: 112 GVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS--TRKEEKQ 169
Query: 65 YN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN----VPPKIESFAFPF 114
N S L + + Y C V + ++ P++ +FA P
Sbjct: 170 RNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPE 229
Query: 115 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSI 167
RT + C + + P ++++WL + L S L +
Sbjct: 230 WPGSRDKRT-LACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEV 288
Query: 168 NSVSAAHSGEYTCVAS 183
E+ C A
Sbjct: 289 TRAEWEQKDEFICRAV 304
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 50.4 bits (120), Expect = 2e-08
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 12/91 (13%)
Query: 119 EGARTRVICGVTHGDPPL---TIRWLKDGK-PLSPRFPVNVSDLDSF-------SSLLSI 167
G V G L ++W K LS + ++ DS+ L I
Sbjct: 18 VGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 198
A +G Y C S + L V
Sbjct: 77 TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 46.9 bits (111), Expect = 2e-07
Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 10/93 (10%)
Query: 20 TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSITHV--------DQYNSML 69
+ VG + + + +KW K +S + Y L
Sbjct: 15 EVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFEL 74
Query: 70 VIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN 102
I +G+Y C V D L V+
Sbjct: 75 HITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 52.2 bits (125), Expect = 2e-08
Identities = 28/183 (15%), Positives = 54/183 (29%), Gaps = 15/183 (8%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWL-KDGRYLDNSAALSITHVDQYNS 67
L P ++ G ++ C G + L K+G + ++
Sbjct: 5 KATLW-AEPGSVISRGNSVTIRCQ---GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKAR- 59
Query: 68 MLVIDSVSARHSGNYSCTVRNMVAE----DTQVQRLIVNVPPKIESFAFPFDGLPEGART 123
I S++ H+G Y C + D ++ ++ K A P + G
Sbjct: 60 -FSIPSMTEHHAGRYRCYYYSPAGWSEPSDP-LELVVTGFYNKPTLSALPSPVVTSGENV 117
Query: 124 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA 182
+ CG ++G + F +L + V+ +H C
Sbjct: 118 TLQCGS--RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Query: 183 SNT 185
S
Sbjct: 176 SRR 178
Score = 33.3 bits (76), Expect = 0.037
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSS 163
K +A P + G + C G L K+G P +
Sbjct: 4 SKATLWAEPGSVISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDT--QNPLEPKNKA 58
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQ 214
SI S++ H+G Y C + A + S L++ P+ + + S
Sbjct: 59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSP 109
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 52.1 bits (125), Expect = 2e-08
Identities = 30/198 (15%), Positives = 62/198 (31%), Gaps = 20/198 (10%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P + P + ++ ++ C G + + +G +++
Sbjct: 4 KPFIW-AEPHFMVPKEKQVTICCQGNYGAV--EYQLHFEGSLFAVDRPKPPERINKVK-- 58
Query: 69 LVIDSVSARHSGNYSCTVRNMVAEDTQ----VQRLIVNVPPKIESFAFPFDGLPEGARTR 124
I +++R +G YSC R ++ + ++ + P + G +
Sbjct: 59 FYIPDMNSRMAGQYSCIYRV-GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVT 117
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
C + LK+G+ + + + V+ AH G Y C S
Sbjct: 118 FYCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTTAHRGTYRCFGSY 170
Query: 185 TAAQARYSS---KLQVKG 199
+ S KL V G
Sbjct: 171 NNHAWSFPSEPVKLLVTG 188
Score = 36.7 bits (85), Expect = 0.003
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSS 163
PK +A P +P+ + + C G+ + +G + P ++
Sbjct: 3 PKPFIWAEPHFMVPKEKQVTICC---QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 58
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
I +++ +G+Y+C+ + S+ L +
Sbjct: 59 -FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL 91
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 50.4 bits (120), Expect = 2e-08
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 12/114 (10%)
Query: 15 TNPERTLNV--GERASLICSITKGDIPLTIKWLKDGR---YLDNSAAL-----SITHVDQ 64
TN T+ V G+ +L C + +++WL +L+ L + H
Sbjct: 5 TNHTETITVEEGQTLTLKCVTSLRKNS-SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
+ + +V+ + G Y C + T+ ++IV K E +P P
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLHYSDSVS-TKEVKVIVLATMKGEFCRYPSHWRP 116
Score = 38.4 bits (89), Expect = 4e-04
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL----------SPRFPVNVSDLDSFSSLLSI 167
EG + C VT +++WL + ++ + + S +++
Sbjct: 14 EEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLS--ITV 70
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
+V+ G Y C+ + + + K+ V
Sbjct: 71 PNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 52.6 bits (126), Expect = 3e-08
Identities = 33/206 (16%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSI---TKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
+ P P+ TL + + C + +K D + W D + + + +
Sbjct: 228 VSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQ--TQPREE 285
Query: 64 QYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV----NVPPKIESFAFP 113
Q+N S L I + + C V + + + P++ + P
Sbjct: 286 QFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPP 345
Query: 114 FDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSDLDSFSSLLSINSVS 171
+ + + + + C +T P +T+ W DG+ + D D + S +V
Sbjct: 346 KEQMAKDKVS-LTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQ 404
Query: 172 AA--HSGE-YTCVASNTAAQARYSSK 194
+ +G +TC + ++ K
Sbjct: 405 KSNWEAGNTFTCSVLHEGLHNHHTEK 430
Score = 44.5 bits (105), Expect = 2e-05
Identities = 42/206 (20%), Positives = 66/206 (32%), Gaps = 28/206 (13%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD 63
T PP + P P +L C + KG P +T+ W ++ D
Sbjct: 116 KTTPPSVYPLAPGSAAQTNSMVTLGCLV-KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSD 174
Query: 64 QYN--SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES-----------F 110
Y S + + S R S +C V + A T+V + IV + F
Sbjct: 175 LYTLSSSVTV-PSSPRPSETVTCNVAHP-ASSTKVDKKIVPRDCGCKPCICTVPEVSSVF 232
Query: 111 AFP---FDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDS 160
FP D L +V C ++ DP + W D + +
Sbjct: 233 IFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR 292
Query: 161 FSSLLSINSVSAAHSGEYTCVASNTA 186
S L I + E+ C ++ A
Sbjct: 293 VVSALPIMHQDWLNGKEFKCRVNSAA 318
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 51.6 bits (123), Expect = 3e-08
Identities = 26/205 (12%), Positives = 54/205 (26%), Gaps = 35/205 (17%)
Query: 17 PERTLNVGERASLICSITKGD----IPLTIKWLKDGRYLDNSAALSITHVDQYNSM---- 68
+ + + ++ C+I + I W D + D +
Sbjct: 11 GTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGA 70
Query: 69 -------------LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFD 115
L + + +G Y C V + +L V P
Sbjct: 71 IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPAS--RLLLDQ 128
Query: 116 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD-----------SFSS 163
+ + +C + P + I W K + ++ + + +S
Sbjct: 129 VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTS 188
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQ 188
L +NS Y CV + +
Sbjct: 189 CLKLNSSQEDPGTVYQCVVRHASLH 213
Score = 38.9 bits (90), Expect = 6e-04
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 17/117 (14%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVD 63
P + + E +C + I I W K + + +S +
Sbjct: 117 VASPASRLLLDQVGMKENE-DKYMCESSGFYPEAI--NITWEKQTQKFPHPIEISEDVIT 173
Query: 64 -----------QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIES 109
S L ++S Y C VR+ + S
Sbjct: 174 GPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230
Score = 33.5 bits (76), Expect = 0.046
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 144 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR 203
+ P V+ L S + L + + +GEY C T +A+ + +L+V
Sbjct: 63 QEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA---- 118
Query: 204 LPPSYTLV 211
P+ L+
Sbjct: 119 -SPASRLL 125
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 50.7 bits (121), Expect = 4e-08
Identities = 18/174 (10%), Positives = 41/174 (23%), Gaps = 34/174 (19%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY---------NSMLVIDS 73
V + + + W K + + + L I +
Sbjct: 9 VYGNVTF--HVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66
Query: 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVP-PKIESFAFPFDGLPEGARTRVICGVTHG 132
+++ Y N+ ++ V P I E + + C V G
Sbjct: 67 LTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYW---------ECSNATLTCEVLEG 117
Query: 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
++ + + L +++ + C A N
Sbjct: 118 TDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNRV 158
Score = 39.1 bits (91), Expect = 4e-04
Identities = 13/91 (14%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 14 PTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDS 73
+ P A+L C + +G + +K + +L + ++++
Sbjct: 96 VSKPMIYWECSN-ATLTCEVLEGT-DVELKLYQGKEHLRSLRQKTMSYQWT--------- 144
Query: 74 VSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
+ C N V++++++ +VN P
Sbjct: 145 ---NLRAPFKCKAVNRVSQESEM--EVVNCP 170
Score = 33.4 bits (76), Expect = 0.029
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 129 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS---------LLSINSVSAAHSGEYT 179
V P + W K ++ SF + L+I +++++ EY
Sbjct: 17 VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76
Query: 180 CVASNTAAQARYS 192
+ N ++
Sbjct: 77 MESPNITDTMKFF 89
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 50.6 bits (121), Expect = 7e-08
Identities = 32/207 (15%), Positives = 67/207 (32%), Gaps = 26/207 (12%)
Query: 10 PKLSPTNP-ERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVDQYN 66
P+LS P L +G A+L C++T +T W +A+
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSS----GKSAVQGPPERDLC 59
Query: 67 ------SMLVIDSVSARHSGNYSCTVRNM---VAEDTQVQRLIVNVPPKIESFAFPFDGL 117
S+L + H ++CT + + P++ P + L
Sbjct: 60 GCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEEL 119
Query: 118 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD---------SFSSLLSI 167
+ C P + +RWL+ + L + + + +S+L +
Sbjct: 120 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV 179
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSK 194
+ ++C+ + A ++ K
Sbjct: 180 AAEDWKKGDTFSCMVGHEALPLAFTQK 206
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 51.0 bits (121), Expect = 9e-08
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 7/100 (7%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQY 65
P T G+ +L C + + T+ W+ + +
Sbjct: 3 PRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGM 58
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
L++ SV SGNYSC L+V+VPP
Sbjct: 59 GRRLLLRSVQLHDSGNYSCYRAG---RPAGTVHLLVDVPP 95
Score = 48.7 bits (115), Expect = 5e-07
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 16/123 (13%)
Query: 120 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
G + C + T+ W+ S L + SV SG Y+
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGMGRRLLLRSVQLHDSGNYS 76
Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFSQASYMSTSYYSFEQDSWMIDNENYVY 239
C + + + L V +PP + ++ W + +
Sbjct: 77 CYRAG---RPAGTVHLLVD-----VPPEEPQLSCFRKSPLSNVVC----EWGPRSTPSLT 124
Query: 240 CTY 242
Sbjct: 125 TKA 127
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 49.8 bits (118), Expect = 1e-07
Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 13/175 (7%)
Query: 11 KLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV 70
++ + + + CS T + P +L+ +D+
Sbjct: 4 EVHVRPKKLAVEPKGSLEVNCS-TTCNQPEVGGL---------ETSLNKILLDEQAQWKH 53
Query: 71 IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVT 130
+ H C +++ + V PP+ + G + C V
Sbjct: 54 YLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVP 113
Query: 131 HGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
+P LT+ + + L F ++ + + ++C+A
Sbjct: 114 TVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 168
Score = 28.2 bits (62), Expect = 1.8
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 117 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
+ V C T P + L +N LD + + +H
Sbjct: 14 VEPKGSLEVNCSTTCNQPEV--GGL--------ETSLNKILLDEQAQWKHYLVSNISHDT 63
Query: 177 EYTCVASNTAAQARYSSKLQV 197
C + + Q +S + V
Sbjct: 64 VLQCHFTCSGKQESMNSNVSV 84
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 49.3 bits (117), Expect = 1e-07
Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 15/168 (8%)
Query: 17 PERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSA 76
+ L G + CS T D P + + + N+ V + +
Sbjct: 7 SKVILPRGGSVLVTCS-TSCDQPKLLGI--------ETPLPKKELLLPGNNRKVYELSNV 57
Query: 77 RHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP- 135
+ C + T L V P+ A P G + + C V G P
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA 117
Query: 136 -LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
LT+ L+ K L V + ++ H +++C
Sbjct: 118 QLTVVLLRGEKELKREPAVG----EPAEVTTTVLVRRDHHGAQFSCRT 161
Score = 36.6 bits (84), Expect = 0.003
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 1 MLVIFSTVPPKLSPTNPERTLNVGERASLICSITKG--DIPLTIKWLKDGRYLDNSAALS 58
+ P ++ VG++ +L C + G LT+ L+ + L A+
Sbjct: 78 TFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG 137
Query: 59 ITHVDQYNSMLVIDSVSARHSGNYSCTVRN 88
+ + H +SC
Sbjct: 138 ----EPAEVTTTVLVRRDHHGAQFSCRTEL 163
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 50.3 bits (120), Expect = 2e-07
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 23/202 (11%)
Query: 12 LSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
+ P + L + + C + + D + I W + + + + TH + YN
Sbjct: 243 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ--TQTHREDYNST 300
Query: 67 ----SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV-----PPKIESFAFPFDGL 117
S L I + C V N ++R I P++ P + +
Sbjct: 301 LRVVSALPIQHQDWMSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVYVLPPPEEEM 359
Query: 118 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAA-- 173
+ T + C VT P + + W +GK V D D + S V
Sbjct: 360 TKKQVT-LTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNW 418
Query: 174 HSGE-YTCVASNTAAQARYSSK 194
Y+C + +++K
Sbjct: 419 VERNSYSCSVVHEGLHNHHTTK 440
Score = 41.8 bits (98), Expect = 1e-04
Identities = 43/235 (18%), Positives = 68/235 (28%), Gaps = 32/235 (13%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITK-GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
T P + P P G +L C + P+T+ W ++ D
Sbjct: 120 KTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDL 179
Query: 65 Y--NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPF-------- 114
Y +S + + S + S + +C V + A T+V + I P I+
Sbjct: 180 YTLSSSVTVTSSTWP-SQSITCNVAHP-ASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLG 237
Query: 115 ------------DGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 159
D L V C V+ DP + I W + + +
Sbjct: 238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDY 297
Query: 160 ----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
S L I E+ C +N A + R P Y L
Sbjct: 298 NSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVL 352
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 48.7 bits (116), Expect = 2e-07
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 10/132 (7%)
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ---VQRLIVNVPPKIESFAFPFDGLPEG 120
Q ++L I ++ +G Y C+ +N ++ + V K A P + G
Sbjct: 49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSG 108
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
+ C K+G P + P + + I +V+AAHSG Y C
Sbjct: 109 GDVTLQCQTR--YGFDQFALYKEGDPAPYKNPER-----WYRASFPIITVTAAHSGTYRC 161
Query: 181 VASNTAAQARYS 192
+ ++ +S
Sbjct: 162 YSFSSRDPYLWS 173
Score = 32.9 bits (75), Expect = 0.049
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 105 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI-RWLKDGKPLSPRFPVNVSDLDSFSS 163
PK A P +P + C G P + + R K +
Sbjct: 7 PKPSLQALPSSLVPLEKPVTLRC---QGPPGVDLYRLEKLSSSRYQ-----------DQA 52
Query: 164 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
+L I ++ + +G Y C N + + S +L++ PS
Sbjct: 53 VLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPS 96
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 46.8 bits (111), Expect = 3e-07
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 20 TLNVGERASLICSITKGDIPLTIKWLKDGRYL--------DNSAALSITHVDQYNSMLVI 71
T+ G A L C + + +++W + + + + + +
Sbjct: 17 TVVEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISV 75
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
VS G Y+C++ + T L V P
Sbjct: 76 SDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 34.5 bits (79), Expect = 0.006
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL----------SPRFPVNVSDLDSFSSLLSI 167
EG + C V + +++W + R + + S +S+
Sbjct: 19 VEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS--ISV 75
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
+ VS + G+YTC T + L V
Sbjct: 76 SDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 47.5 bits (113), Expect = 6e-07
Identities = 33/202 (16%), Positives = 69/202 (34%), Gaps = 23/202 (11%)
Query: 12 LSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
+ P P+ L + + C + K D + W D + A + +Q+N
Sbjct: 6 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDV--EVHTAQTKPREEQFNST 63
Query: 67 ----SMLVIDSVSARHSGNYSCTVRN----MVAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
S L I + + C V + E T + P++ + P + +
Sbjct: 64 FRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMA 123
Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD-----SFSSLLSINSVSA 172
+ + + C +T P +T+ W +G+P + +D S L++ +
Sbjct: 124 KDKVS-LTCMITDFFPEDITVEWESNGQPAE-NYKNTQPIMDTDGSYFVYSKLNVQKSNW 181
Query: 173 AHSGEYTCVASNTAAQARYSSK 194
+TC + ++ K
Sbjct: 182 EAGNTFTCSVLHEGLHNHHTEK 203
Score = 34.1 bits (78), Expect = 0.027
Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 104 PPKIESFAFPFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLS----PRFPVNVS 156
PPK + D L +V C ++ DP + W D + +
Sbjct: 8 PPKPK------DVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFN 61
Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
S L I + E+ C ++ A A + + P YTL
Sbjct: 62 STFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTL 115
Score = 31.0 bits (70), Expect = 0.25
Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 5 FSTVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITH 61
P++ P + ++ SL C IT DI T++W +G+ +N +
Sbjct: 105 GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDI--TVEWESNGQPAENYK--NTQP 160
Query: 62 VDQYN------SMLVIDSVSARHSGNYSCTV 86
+ + S L + + ++C+V
Sbjct: 161 IMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV 191
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 46.8 bits (111), Expect = 1e-06
Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 23/202 (11%)
Query: 12 LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
+ P N + L + + C + D + I W + + A + TH + YN
Sbjct: 14 IFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNV--EVHTAQTQTHREDYNST 71
Query: 67 ----SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVN----VPPKIESFAFPFDGLP 118
S L I + C V N + + P++ P + L
Sbjct: 72 IRVVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLS 131
Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD-----SFSSLLSINSVSA 172
+ + C V +P +++ W +G + LD S L++ +
Sbjct: 132 RKDVS-LTCLVVGFNPGDISVEWTSNGHTEE-NYKDTAPVLDSDGSYFIYSKLNMKTSKW 189
Query: 173 AHSGEYTCVASNTAAQARYSSK 194
+ ++C + + Y K
Sbjct: 190 EKTDSFSCNVRHEGLKNYYLKK 211
Score = 36.4 bits (84), Expect = 0.004
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 125 VICGVTHGDPPLTIRWLKDGKPL----SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
V+ V+ DP + I W + + + + + S L I E+ C
Sbjct: 34 VVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKC 93
Query: 181 VASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
+N + + K P +
Sbjct: 94 KVNNKDLPS-PIERTISKIKGLVRAPQVYI 122
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 45.8 bits (108), Expect = 3e-06
Identities = 40/218 (18%), Positives = 73/218 (33%), Gaps = 32/218 (14%)
Query: 6 STVPPKLSPTNP-ERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHV 62
S P +L P L + A L C + L++ W ++ N +
Sbjct: 9 SCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKS--GNLRPDPMVLQ 66
Query: 63 DQYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV----NVPPKIESFAF 112
+ +N S + + + ++CTV++ + + PP I FA
Sbjct: 67 EHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAP 126
Query: 113 PFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN---------------VS 156
+ L T + C V P + IRWL+D + + V
Sbjct: 127 HPEELSLSRVT-LSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDG 185
Query: 157 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
D S +S+ + + C+A + A R+S +
Sbjct: 186 DTFFVYSKMSVETAKWNGGTVFACMAVHEALPMRFSQR 223
Score = 28.8 bits (64), Expect = 1.5
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 13/113 (11%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLD-- 159
PP L ++ C V + L++ W ++ P+ + +
Sbjct: 19 PPSPGE-------LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNG 71
Query: 160 --SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
S SS + +++ +TC + S + P Y
Sbjct: 72 TYSASSAVPVSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPF 124
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 46.4 bits (110), Expect = 4e-06
Identities = 45/197 (22%), Positives = 70/197 (35%), Gaps = 21/197 (10%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD 63
ST P + P P G A+L C + K P +T+ W S + V
Sbjct: 216 STKGPSVFPLAPSSKSTSGGTAALGCLV-KDYFPQPVTVSWNSGAL---TSGVHTFPAVL 271
Query: 64 QYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFA-FPFDG 116
Q + S++ + S S+ + Y C V + + +R+ P + F P D
Sbjct: 272 QSSGLYSLSSVVTVPS-SSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDT 330
Query: 117 LPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINS 169
L V C V+H DP + W DG + + S+L++
Sbjct: 331 LMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLH 390
Query: 170 VSAAHSGEYTCVASNTA 186
+ EY C SN A
Sbjct: 391 QNWLDGKEYKCKVSNKA 407
Score = 41.0 bits (96), Expect = 2e-04
Identities = 38/206 (18%), Positives = 72/206 (34%), Gaps = 23/206 (11%)
Query: 8 VPPKLSPTNPERTLNVGERASLICSI---TKGDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
L P P+ TL + + C + + D + W DG A + Q
Sbjct: 318 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGV--QVHNAKTKPREQQ 375
Query: 65 YN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV-----PPKIESFAFP 113
YN S+L + + Y C V N A +++ I P++ +
Sbjct: 376 YNSTYRVVSVLTVLHQNWLDGKEYKCKVSNK-ALPAPIEKTISKAKGQPREPQVYTLPPS 434
Query: 114 FDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR--FPVNVSDLDSF--SSLLSIN 168
+ + + + + C V P + + W +G+P + P + SF S L+++
Sbjct: 435 REEMTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVD 493
Query: 169 SVSAAHSGEYTCVASNTAAQARYSSK 194
++C + A Y+ K
Sbjct: 494 KSRWQQGNVFSCSVMHEALHNHYTQK 519
Score = 30.2 bits (68), Expect = 0.60
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 135 PLTIRWLKDGKPLSP---RFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 186
+T+ W DG P+ ++ + SS LS+ Y+C ++
Sbjct: 145 AVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEG 201
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 45.0 bits (105), Expect = 8e-06
Identities = 27/133 (20%), Positives = 36/133 (27%), Gaps = 15/133 (11%)
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGL-PEGARTR 124
N + V G Y T+ + L V PPK+ P A
Sbjct: 253 NGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPE 312
Query: 125 VICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSF-----------SSLLSINSVS 171
++C V+H P L + W G P S S L V+
Sbjct: 313 LLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372
Query: 172 AAHSGE-YTCVAS 183
G Y C
Sbjct: 373 TEQHGARYACRIH 385
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 44.5 bits (105), Expect = 8e-06
Identities = 33/207 (15%), Positives = 66/207 (31%), Gaps = 26/207 (12%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHV 62
PPK + L G + C + + D + W D + A +
Sbjct: 19 FIFPPK-----TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDV--EVHTAQTHAPE 71
Query: 63 DQYN------SMLVIDSVSARHSGNYSCTVRNMVA----EDTQVQRLIVNVPPKIESFAF 112
Q N S L I + + C V + E + + P++ + A
Sbjct: 72 KQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAP 131
Query: 113 PFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLSI 167
P + + + + + C V PP + W +G+P ++ S L++
Sbjct: 132 PKEEMTQSQVS-ITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNV 190
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSK 194
+ +TC + + ++ K
Sbjct: 191 KKETWQQGNTFTCSVLHEGLENEHTEK 217
Score = 36.1 bits (83), Expect = 0.006
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS-----SLLSINSVSAAHSGEYT 179
V+ ++ DP + W D + + + S S S L I + +
Sbjct: 40 VVVDISQNDPEVRFSWFIDDVEVHTAQT-HAPEKQSNSTLRSVSELPIVERDWLNGKTFK 98
Query: 180 CVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
C ++ A A + R P YT+
Sbjct: 99 CKVNSGAFPAPIEKSISKPEGTPRGPQVYTM 129
Score = 29.9 bits (67), Expect = 0.57
Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 5 FSTVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITH 61
+ P++ P + + S+ C + DI +W +G+ +N +
Sbjct: 119 GTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDI--YTEWKMNGQPQENYK--NTPP 174
Query: 62 VDQYN------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
+ S L + + + ++C+V + E+ ++ + + P K
Sbjct: 175 TMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLENEHTEKSLSHSPGK 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 68/220 (30%)
Query: 1 MLVIF---STVPPKL--------SPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR 49
L +F + +P L ++ +N + SL+ K K+
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-----------EKQPKEST 425
Query: 50 Y------------LDNSAALSITH---VDQYNSMLVIDS--VSARHSGNYSC-------T 85
L+N AL H VD YN DS + + Y
Sbjct: 426 ISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 86 VRNMVAEDTQVQRLIVN---VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK 142
T + + ++ + KI D A ++ + +++ K
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRH-----DSTAWNASGSIL------NTLQQLKFYK 531
Query: 143 DG-KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 181
P++ V+ + F L I +YT +
Sbjct: 532 PYICDNDPKYERLVNAILDF--LPKIEENL--ICSKYTDL 567
Score = 39.8 bits (92), Expect = 6e-04
Identities = 45/277 (16%), Positives = 76/277 (27%), Gaps = 91/277 (32%)
Query: 37 DIPLTIKWLKDG--RYLDNSAALSITHVDQY-NSMLVIDSV-SARH--SGNYSC----TV 86
+I L I ++ R L + Y N +LV+ +V +A+ + N SC T
Sbjct: 222 NIKLRIHSIQAELRRLLKSK---------PYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 87 RN-----MVAEDTQVQRLIVNVPP---KIES---FA----FPFDGLPEGART---RVI-- 126
R ++ T + + E LP T R +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 127 CGVTHGDPPLTI-RWLKDGKP------------LSPR-----------FPVNV------- 155
+ D T W L P FP +
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 156 ---------SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPP 206
SD+ + L S+ E T S + KL+ + L+R
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHR--- 447
Query: 207 SYTLVFSQASYMSTSYYSFEQDSWMIDNENYVYCTYL 243
++V Y + + D + Y Y ++
Sbjct: 448 --SIV---DHYNIPKTFDSD-DLIPPYLDQYFYS-HI 477
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 43.3 bits (102), Expect = 4e-05
Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 23/209 (11%)
Query: 6 STVPPKLSPTNP--ERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSIT 60
P + P + TL + + C + D + W DG + N A +
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN--AKTKP 301
Query: 61 HVDQYN------SMLVIDSVSARHSGNYSCTVRN----MVAEDTQVQRLIVNVPPKIESF 110
+QYN S+L + + Y C V N E T + P++ +
Sbjct: 302 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 361
Query: 111 AFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSIN 168
D L + + + C V P + + W +G+P + V D D L S
Sbjct: 362 PPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL 420
Query: 169 SVSAA--HSGE-YTCVASNTAAQARYSSK 194
+V + G ++C + A Y+ K
Sbjct: 421 TVDKSRWQQGNVFSCSVMHEALHNHYTQK 449
Score = 40.2 bits (94), Expect = 4e-04
Identities = 51/238 (21%), Positives = 75/238 (31%), Gaps = 38/238 (15%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP--LTIKWLKDGRYLDNSAALSITHVD 63
ST P + P P G A+L C + K P +T+ W S + V
Sbjct: 129 STKGPSVFPLAPSSKSTSGGTAALGC-LVKDYFPEPVTVSWNSGAL---TSGVHTFPAVL 184
Query: 64 QYNSM-----LVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIV----------NVPPKIE 108
Q + + +V S+ + Y C V + +T+V + P E
Sbjct: 185 QSSGLYSLSSVVTVPSSSLGTQTYICNVNHK-PSNTKVDKKAEPKSCDKTHTCPPCPAPE 243
Query: 109 SFAFP---------FDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV--- 153
P D L V C V+H DP + W DG +
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE 303
Query: 154 -NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
+ S+L++ + EY C SN A A + R P YTL
Sbjct: 304 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 361
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 42.6 bits (100), Expect = 4e-05
Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 21/201 (10%)
Query: 12 LSPTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
L P P+ TL + + C + D + W DG + A + +QYN
Sbjct: 27 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV--HNAKTKPREEQYNST 84
Query: 67 ----SMLVIDSVSARHSGNYSCTVRNM----VAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
S+L + + Y C V N E T + P++ + D L
Sbjct: 85 YRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELT 144
Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAA 173
+ + + C V P + + W +G+P + S L+++
Sbjct: 145 KNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQ 203
Query: 174 HSGEYTCVASNTAAQARYSSK 194
++C + A Y+ K
Sbjct: 204 QGNVFSCSVMHEALHNHYTQK 224
Score = 36.1 bits (83), Expect = 0.005
Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 123 TRVICGVTHGDPPLTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
T V+ V+H DP + W DG + + S+L++ + EY
Sbjct: 45 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 104
Query: 179 TCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
C SN A A + R P YTL
Sbjct: 105 KCKVSNKALPAPIEKTISKAKGQPREPQVYTL 136
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 41.8 bits (98), Expect = 6e-05
Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 21/201 (10%)
Query: 12 LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVDQYN-- 66
L P P+ TL + + C + D + W DG + A + +QYN
Sbjct: 6 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV--HNAKTKPREEQYNST 63
Query: 67 ----SMLVIDSVSARHSGNYSCTVRN----MVAEDTQVQRLIVNVPPKIESFAFPFDGLP 118
S+L + + Y C V N E T + P++ + D L
Sbjct: 64 YRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELT 123
Query: 119 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD----LDSFSSLLSINSVSAA 173
+ + + C V P + + W +G+P + S L+++
Sbjct: 124 KNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ 182
Query: 174 HSGEYTCVASNTAAQARYSSK 194
++C + A Y+ K
Sbjct: 183 QGNVFSCSVMHEALHNHYTQK 203
Score = 37.2 bits (86), Expect = 0.002
Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 113 PFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPL----SPRFPVNVSDLDSFSSLL 165
P D L V C V+H DP + W DG + + + S+L
Sbjct: 11 PKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVL 70
Query: 166 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
++ + EY C SN A A + R P YTL
Sbjct: 71 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL 115
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 40.9 bits (95), Expect = 6e-05
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGR---YLDNSAAL-----SIT 60
P + T+ G L C + K +++W + Y AL +
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKCQV-KDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLV 96
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
+ + I +V+ G Y+C++ + T + V P+
Sbjct: 97 TSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGIPQ 141
Score = 33.6 bits (76), Expect = 0.022
Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 14/90 (15%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPL----------SPRFPVNVSDLDSFSSLLSI 167
G + C +++W + R + S S +SI
Sbjct: 51 VAGGTVVLKC-QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELS--ISI 107
Query: 168 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
++V+ A GEYTC T S + V
Sbjct: 108 SNVALADEGEYTCSI-FTMPVRTAKSLVTV 136
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 42.2 bits (99), Expect = 9e-05
Identities = 39/249 (15%), Positives = 75/249 (30%), Gaps = 43/249 (17%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITKGDIP---LTIKWLKDGRYLDNSAALSITHV 62
S PK+ P + T + C + +G P L++ W + G+ A +
Sbjct: 124 SPTSPKVFPLSLCSTQP-DGNVVIAC-LVQGFFPQEPLSVTWSESGQ---GVTARNFPPS 178
Query: 63 DQYN-------SMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP----------- 104
+ S L + + + +C V++ V
Sbjct: 179 QDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPP 238
Query: 105 --------PKIESFAFPFDGLPEGARTRVICGVT--HGDPPLTIRWLKDG--KPLSPRFP 152
P++ + L G+ + C +T +T W +
Sbjct: 239 TPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPE 298
Query: 153 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNR-----LPPS 207
++ S SS+L + H +TC A+ ++ ++ L GN R LPP
Sbjct: 299 RDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPP 358
Query: 208 YTLVFSQAS 216
+
Sbjct: 359 SEELALNEL 367
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 39.9 bits (93), Expect = 1e-04
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 15 TNPERTLNVGERASLICSITKGDIPLT-IKWLKDGRYLDNSAALSITHV-DQY------- 65
T + G L C ++ +T + W + + L A H+ +
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68
Query: 66 -NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIE 108
L + S++ +G Y C + L V E
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113
Score = 33.4 bits (76), Expect = 0.018
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 127 CGVTHGDPPLT-IRWLKDGKPL-----------SPRFPVNVSDLDSFSSLLSINSVSAAH 174
C ++ +T + W + + L SP F V+ L++ S++
Sbjct: 25 CHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG--LTLQSLTVND 82
Query: 175 SGEYTC-VASNTAAQARYSSKLQV 197
+GEY C + L+V
Sbjct: 83 TGEYFCIYHTYPDGTYTGRIFLEV 106
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 41.5 bits (97), Expect = 1e-04
Identities = 21/194 (10%), Positives = 54/194 (27%), Gaps = 41/194 (21%)
Query: 13 SPTNPERTLNVGERASLICSI------TKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN 66
SP +P + + + +C + I W + + T +++
Sbjct: 9 SPESP--VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTA 63
Query: 67 SMLVIDSVSARHSGNYSCTVRNM--VAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTR 124
S + +++ + +C + + ++ +I +PP
Sbjct: 64 SSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPP--------------EKPKN 108
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSP------------RFPVNVSDLDSFSSLLSINSVSA 172
+ C + + + W + +F + D+ +S S
Sbjct: 109 LSC-IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVY 167
Query: 173 AHSGEYTCVASNTA 186
+ E A N
Sbjct: 168 FVNIEVWVEAENAL 181
Score = 32.3 bits (73), Expect = 0.13
Identities = 8/73 (10%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC--VASN 184
C I W + + + ++ +S ++ ++ + + + TC +
Sbjct: 31 CMDYFHVNANYIVWKTNHFTIPKE---QYTIINRTASSVTFTDIA-SLNIQLTCNILTFG 86
Query: 185 TAAQARYSSKLQV 197
Q Y +
Sbjct: 87 QLEQNVYGITIIS 99
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 37.9 bits (87), Expect = 5e-04
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 9 PPKLSPTNPER-TLNVGERASLICSITKGDIPL--TIKWLKDGRYLDNSAALSI------ 59
P + P+ ++ G+ A ++ + ++P TIKW K G++L+ +
Sbjct: 11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFK-GKWLELGSKSGARFSFKE 69
Query: 60 ---THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVP 104
+ + Y L I V G Y V+ D+ + V P
Sbjct: 70 SHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 37.1 bits (85), Expect = 0.001
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 118 PEGARTRVICGVTHGDPPL--TIRWLK---------DGKPLSPRFPVNVSDLDSFSSLLS 166
G V+ V + P TI+W K G S + N + + ++ L
Sbjct: 25 ETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSAS-NVYTVELH 83
Query: 167 INSVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
I V G Y + V+
Sbjct: 84 IGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 37.2 bits (86), Expect = 0.002
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 19/145 (13%)
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAED-----------TQVQRLIVNVPPK 106
+ Q L+++ + + Y C T ++ L PPK
Sbjct: 63 KASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPK 122
Query: 107 IESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS---PRFPVNVSDLDSFS 162
+ F + + ++C P + + W +GK + P + +
Sbjct: 123 VSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSY 182
Query: 163 SLLSINSVSAA----HSGEYTCVAS 183
L S VSA + C
Sbjct: 183 CLSSRLRVSATFWHNPRNHFRCQVQ 207
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 35.9 bits (82), Expect = 0.002
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 1/58 (1%)
Query: 133 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 190
P I W + K + D L SG Y C + +
Sbjct: 31 YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGSKPEDA 87
Score = 33.2 bits (75), Expect = 0.019
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 24 GERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYS 83
G L C G I W + + + D+ + + + + SG Y
Sbjct: 21 GTTVILTCPQYPGS---EILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYV 76
Query: 84 CTVRNMVAED 93
C R ED
Sbjct: 77 CYPRGSKPED 86
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 36.5 bits (84), Expect = 0.004
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 21/147 (14%)
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQV---------QRLIVNVPPKIE 108
S++ + + L + S + Y C + + + + L PP++
Sbjct: 67 SVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVA 126
Query: 109 SFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDS 160
F + + ++C T P + + W +GK + + DS
Sbjct: 127 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDS 186
Query: 161 FSSLLSINSVSAA----HSGEYTCVAS 183
SL S VSA + C
Sbjct: 187 RYSLSSRLRVSATFWQNPRNHFRCQVQ 213
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.3 bits (81), Expect = 0.004
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 12/95 (12%)
Query: 23 VGERASLICSITKGDIPLTIKWLK-----------DGRYLDNSAALSITHVDQYNSMLVI 71
G +L S + + + W S +D + L I
Sbjct: 18 SGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYI 77
Query: 72 DSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPP 105
V + Y V + + + +L V P
Sbjct: 78 SKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPV 112
Score = 29.1 bits (65), Expect = 0.52
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 12/83 (14%)
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-----------DLDSFSSLLSINSVSAAHS 175
+ + + W + S LD S L I+ V +
Sbjct: 26 ISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDN 85
Query: 176 GEYTCVASNTAAQARYSS-KLQV 197
Y + KLQV
Sbjct: 86 STYIMRVLKKTGNEQEWKIKLQV 108
>3i84_A Cervical EMMPRIN; CD147, dimerization, cell adhesion, beta-strand
swapping; 2.00A {Homo sapiens} PDB: 3i85_A
Length = 98
Score = 34.8 bits (79), Expect = 0.005
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 120 GARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 178
G++ + C + +T RWLK G L L + ++S GEY
Sbjct: 22 GSKILLTCSLDDSATEVTGHRWLKGGVVLKE------DALPGQKTEFKVDS--DDQWGEY 73
Query: 179 TCV 181
+CV
Sbjct: 74 SCV 76
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 34.6 bits (79), Expect = 0.006
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 15/91 (16%)
Query: 118 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL---------LSIN 168
+G ++ W +G+ L P + + L ++
Sbjct: 21 YDGEDAVFSLDLSTIIQG---TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILH 77
Query: 169 SVSAAHSGEYTCVASNTAAQARYSSKLQVKG 199
+V SG + + S+ L ++
Sbjct: 78 AVKHQDSGALVGF---SCPGVQDSAALTIQE 105
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 36.1 bits (83), Expect = 0.008
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 6/113 (5%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVT-HGDPPLTIRWLKDGKPLSPRFPVNVSDLD--- 159
P + L + C V + W GK + + +
Sbjct: 296 PLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNG 355
Query: 160 --SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTL 210
S S L++ TC ++ + + L+ + S L
Sbjct: 356 SQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAPVKLSLNL 408
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 35.5 bits (80), Expect = 0.012
Identities = 31/203 (15%), Positives = 49/203 (24%), Gaps = 24/203 (11%)
Query: 4 IFSTVPPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVD 63
I+ GE L C + D I W D + V
Sbjct: 1 IWELKKDVYVVELDWYPDAPGEMVVLTCDTPEED---GITWTLDQS----------SEVL 47
Query: 64 QYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGART 123
L I +G Y+C V + + I S D +T
Sbjct: 48 GSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLL--HKKEDGIWSTDILKDQKEPKNKT 105
Query: 124 RVICGVTHGDPPLTIRWLKDGKP---------LSPRFPVNVSDLDSFSSLLSINSVSAAH 174
+ C + T WL P V+ + S + + +
Sbjct: 106 FLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEY 165
Query: 175 SGEYTCVASNTAAQARYSSKLQV 197
C + A S ++V
Sbjct: 166 EYSVECQEDSACPAAEESLPIEV 188
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.0 bits (78), Expect = 0.012
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 22/113 (19%)
Query: 15 TNPERTLNVGERASLICSITKGDIPLT----IKWLKD-------------GRYLDNSAAL 57
+ +G+ +L C + ++ +T + W + G S L
Sbjct: 6 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65
Query: 58 SITHVDQYNSM----LVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPP 105
+ L + + GNY+C V L V P
Sbjct: 66 EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.013
Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 77/196 (39%)
Query: 69 LVIDSVSARHSGNYSC--TVRNMVAEDTQVQRLI--VN--VPP--KIESFAFPFDGLPEG 120
++ DS+ G S ++ N+ QVQ + N +P ++E L G
Sbjct: 323 ILEDSLENNE-GVPSPMLSISNL--TQEQVQDYVNKTNSHLPAGKQVEI------SLVNG 373
Query: 121 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
A+ V+ G PP L + L A +
Sbjct: 374 AKNLVVSG-----PP--------------------QSLYGLNLTLR--KAKAPSGLD--- 403
Query: 181 VASNTAAQAR--YSSKLQVKGNLNRLP---PSYTLVF-SQASYMSTSYYSFEQDSWMIDN 234
Q+R +S + ++K + LP P F S + + +D +N
Sbjct: 404 -------QSRIPFSER-KLKFSNRFLPVASP-----FHS--HLLVPASDLINKDLVK-NN 447
Query: 235 ENY--------VYCTY 242
++ VY T+
Sbjct: 448 VSFNAKDIQIPVYDTF 463
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 34.8 bits (80), Expect = 0.019
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 6/96 (6%)
Query: 104 PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS--PRFPV--NVSDL 158
P++ + P + + C V P + + W +G+P + P +
Sbjct: 242 EPQVYTLP-PSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS 300
Query: 159 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 194
S L+++ ++C + A Y+ K
Sbjct: 301 FFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 336
Score = 34.1 bits (78), Expect = 0.033
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 6 STVPPKLSPTNPERTLNVGERASLICSITK-GDIPLTIKWLKDGRYLDNSAALSITHVDQ 64
P++ P R + SL C + + ++W +G+ + + V
Sbjct: 239 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ--PENNYKTTPPVLD 296
Query: 65 YN------SMLVIDSVSARHSGNYSCTVRN 88
+ S L +D + +SC+V +
Sbjct: 297 SDGSFFLYSKLTVDKSRWQQGNVFSCSVMH 326
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 34.6 bits (78), Expect = 0.025
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 4/49 (8%)
Query: 134 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
T W P + S L I +++A G Y C A
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNCI----LFIENLTAQQYGHYFCEA 571
Score = 28.8 bits (63), Expect = 1.6
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT 85
T W + N +L I++++A+ G+Y C
Sbjct: 530 TYSWRHKENVEQSCEP----GHQSPNCILFIENLTAQQYGHYFCE 570
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 33.0 bits (75), Expect = 0.029
Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 23 VGERASLICSIT--KGDIPLTIKWLK-----------DGRYLD--------NSAALSITH 61
VG+ A L C I+ K + + W + +G+ D L
Sbjct: 20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKES 79
Query: 62 VDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPKI 107
+ + L I +V G Y+C R+ ++ L V P
Sbjct: 80 IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 125
Score = 26.8 bits (59), Expect = 3.8
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
L I +V + G YTC + + Q + +L+V+ + P
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPG 129
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 33.8 bits (77), Expect = 0.029
Identities = 34/194 (17%), Positives = 55/194 (28%), Gaps = 36/194 (18%)
Query: 17 PERTLNVGERASLICSITKGDIPL---------TIKWL--------KDGRYLDNSAALSI 59
+L+ G ++L C+ T + ++ L ++GR +
Sbjct: 9 SALSLHEGTDSALRCNFTTTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKER 68
Query: 60 THVDQYNSMLVIDSVSARHSGNYSCTVRNMVAE---------DTQVQRLIVNVPPKIESF 110
+ S L I SG Y C Q V V PK +
Sbjct: 69 RY-----STLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPP 123
Query: 111 AFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINS 169
A P + + V C V P +TI K + + +S S + +
Sbjct: 124 AKPSVFIMKNGTN-VACLVKDFYPKEVTISLRSSKKIVEFDPAIVISP-SGKYSAVKLGQ 181
Query: 170 VSAAHSGEYTCVAS 183
S TC
Sbjct: 182 YGD--SNSVTCSVQ 193
Score = 27.6 bits (61), Expect = 2.9
Identities = 12/62 (19%), Positives = 18/62 (29%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
+++ +L G + R + S L I SG Y C A Y
Sbjct: 40 RGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGY 99
Query: 192 SS 193
Sbjct: 100 EL 101
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 32.4 bits (74), Expect = 0.032
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 8/62 (12%)
Query: 129 VT---HGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 184
VT H L +G + D FS + +G Y C
Sbjct: 22 VTLRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFS----FAVTNLEDAGTYQCRYQV 77
Query: 185 TA 186
+
Sbjct: 78 SE 79
Score = 29.3 bits (66), Expect = 0.39
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSM 68
P LS +P + +++G+ +L C + + ++ +G +Q +
Sbjct: 5 QPSLS-LHPSQGVSLGDTVTLRCHLPRMAA--WVQLWLNGT----LRFDKEKDKEQDAAE 57
Query: 69 LVIDSVSARHSGNYSC 84
+ +G Y C
Sbjct: 58 FSFAVTNLEDAGTYQC 73
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 31.9 bits (73), Expect = 0.041
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 6 STVPPK--LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDG 48
+ + PK + P + G + L C I +I +KDG
Sbjct: 1 ADLTPKVQVYSRFPA---SAGTKNVLNCFAAGFHPPKI--SITLMKDG 43
Score = 30.0 bits (68), Expect = 0.22
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 102 NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP 146
++ PK++ + G + + C PP ++I +KDG P
Sbjct: 2 DLTPKVQ--VYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVP 45
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 33.4 bits (76), Expect = 0.056
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ-RLIVNVPPKIESFAFPFDGLPEGARTR 124
N L + +V + G + C N ++T+ R+ V P L G +
Sbjct: 431 NGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNK 490
Query: 125 V-ICGVTHGDPPLTIRWLKDGKPLSP 149
V C P T+ W DGKPL P
Sbjct: 491 VGTCVSEGSYPAGTLSWHLDGKPLVP 516
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, MHC class I molecule
from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 31.6 bits (72), Expect = 0.070
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 7 TVPPK--LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDG 48
+ PK + P + G + L C I +I +KDG
Sbjct: 22 DLTPKVQVYSRFPA---SAGTKNVLNCFAAGFHPPKI--SITLMKDG 63
Score = 27.8 bits (62), Expect = 1.7
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 102 NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL 147
++ PK++ + G + + C PP ++I +KDG P+
Sbjct: 22 DLTPKVQ--VYSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPM 66
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 32.8 bits (75), Expect = 0.071
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD 159
P + F + L T ++C ++ P +T+ W DG P+
Sbjct: 132 PKAAPSVTLFPPSSEELQANKAT-LVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQ 190
Query: 160 S-----FSSLLSINSVSAAHSGEYTCVAS 183
S SS LS+ Y+C +
Sbjct: 191 SNNKYAASSYLSLTPEQWKSHRSYSCQVT 219
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 32.7 bits (74), Expect = 0.087
Identities = 32/199 (16%), Positives = 58/199 (29%), Gaps = 38/199 (19%)
Query: 23 VGERASLICSITKGDI------------PLTIKWLKDGRYLDNSAAL----SITHVDQYN 66
+G+ +L C + + +G+ ++ S S+ D
Sbjct: 16 MGQMVTLNCDPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSY 75
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDTQ----------VQRLIVNVPPKIESFAFPFDG 116
L I + S Y C A Q ++ L PP++ F
Sbjct: 76 FTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 135
Query: 117 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLLSIN 168
+ + ++C T P + + W +GK + + DS +L S
Sbjct: 136 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRL 195
Query: 169 SVSAA----HSGEYTCVAS 183
VSA + C
Sbjct: 196 RVSATFWQNPRNHFRCQVQ 214
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.5 bits (71), Expect = 0.087
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 24/116 (20%)
Query: 15 TNPERTLNVGERASLICSITKGDIP---LTIKWLK----------------DGRYLDNSA 55
T+ E VG + +L CS + ++ W Y+D
Sbjct: 5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVG 64
Query: 56 ALS-----ITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPPK 106
+ + +VI ++ +G ++C V+N + ++ + V K
Sbjct: 65 TFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.1 bits (70), Expect = 0.10
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 25/98 (25%)
Query: 23 VGERASLICSIT--KGDIPLTIKWLK--------------------DGRYLDNSAALSIT 60
+ C +G + +KWL +Y L ++
Sbjct: 15 WKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGR---LKVS 71
Query: 61 HVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQR 98
H + L I+++ +Y+C V + QV R
Sbjct: 72 HKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIR 109
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 30.8 bits (70), Expect = 0.11
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 7 TVPPK--LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDG 48
PK + P G+ +LIC ++ DI +I+ LK+G
Sbjct: 2 VSSPKIQVYSHYPG---EYGKENTLICYVSGFHPPDI--SIELLKNG 43
Score = 29.6 bits (67), Expect = 0.26
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 103 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 148
PKI+ + G +IC V+ PP ++I LK+G+ ++
Sbjct: 3 SSPKIQ--VYSHYPGEYGKENTLICYVSGFHPPDISIELLKNGEVIA 47
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 30.8 bits (70), Expect = 0.11
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 148
+ P+I+ + G + C VT PP + I+ LK+GK +
Sbjct: 1 IQKTPQIQ--VYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP 47
Score = 30.4 bits (69), Expect = 0.17
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 8 VPPK--LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGR 49
P+ + +P G+ L C +T+ I I+ LK+G+
Sbjct: 3 KTPQIQVYSRHPP---ENGKPNILNCYVTQFHPPHI--EIQMLKNGK 44
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 32.3 bits (73), Expect = 0.12
Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 22/148 (14%)
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQ----------VQRLIVNVPPKI 107
S L I S A S Y C ++DTQ ++ L PP++
Sbjct: 92 SAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEV 151
Query: 108 ESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS-------PRFPVNVSDLD 159
F + + ++C T P + + W +GK + + D
Sbjct: 152 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALND 211
Query: 160 SFSSLLSINSVSAA----HSGEYTCVAS 183
S +L S VSA + C
Sbjct: 212 SRYALSSRLRVSATFWQNPRNHFRCQVQ 239
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 30.8 bits (70), Expect = 0.12
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 100 IVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 148
++ PKI+ + G + C V+ P + + LK+G+ +
Sbjct: 1 MIQRTPKIQ--VYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE 48
Score = 30.8 bits (70), Expect = 0.13
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 8 VPPK--LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDG 48
PK + +P G+ L C ++ DI + LK+G
Sbjct: 4 RTPKIQVYSRHPA---ENGKSNFLNCYVSGFHPSDI--EVDLLKNG 44
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.0 bits (70), Expect = 0.12
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 26/107 (24%)
Query: 23 VGERASLICSIT---KGDIPLTIKWLK---------------DGRYLDNS--------AA 56
GE A L C T + PL I+WL G + +
Sbjct: 19 KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVH 78
Query: 57 LSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
+ + ++ + + ++ G Y C V+ + L+V V
Sbjct: 79 FTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
Score = 26.0 bits (57), Expect = 7.7
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 165 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
+++ ++ + G Y C A L V
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel,
immune response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 30.8 bits (70), Expect = 0.14
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 9 PPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDG 48
++ +P G+ L C ++ DI + LK+G
Sbjct: 26 KIQVYSRHPAEN---GKSNFLNCYVSGFHPSDI--EVDLLKNG 63
Score = 26.2 bits (58), Expect = 6.2
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 101 VNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL 147
+ PKI+ + G + C V+ P + + LK+G+ +
Sbjct: 21 IQRTPKIQ--VYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI 66
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 31.7 bits (72), Expect = 0.15
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSA 172
V+C + + P + ++W DG + +D D S SS L++
Sbjct: 169 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY 228
Query: 173 AHSGEYTCVASN 184
YTC A++
Sbjct: 229 ERHNSYTCEATH 240
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 32.0 bits (71), Expect = 0.16
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 134 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 182
+ W L P L I ++S SG Y C++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYG---LMGRKNLLIFNLSEGDSGVYQCLS 605
Score = 32.0 bits (71), Expect = 0.16
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 8/74 (10%)
Query: 41 TIKWLKDGRYLDNSAALSITHVDQYNSMLVIDSVSARHSGNYSCT-----VRNMVAEDTQ 95
+ W L + + L+I ++S SG Y C V +
Sbjct: 563 RVFWKFQNGVLKAESP---KYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVA 619
Query: 96 VQRLIVNVPPKIES 109
L V V PK
Sbjct: 620 KHVLEVKVVPKPVV 633
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 31.2 bits (70), Expect = 0.19
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 136 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS--- 192
LTI + + R+ + SSL I + + S Y CV S+ +
Sbjct: 49 LTIMTFSENTKSNGRYTATLDADTKQSSL-HITASQLSDSASYICVVSDRGSTLGRLYFG 107
Query: 193 --SKLQVKGNLNRLPPS-YTLVFSQASYMS----TSYYSFEQDSWMIDNENY 237
++L V ++ P+ Y L S++S S T + S S D++ Y
Sbjct: 108 RGTQLTVWPDIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVY 159
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.0 bits (70), Expect = 0.21
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 148 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPS 207
RF + + + SL I S Y C AS+ ++L VK N+ P+
Sbjct: 58 DGRFTIFFNKREKKFSL-HIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPA 116
Query: 208 -YTLVFSQASYMS----TSYYSFEQD-SWMIDN 234
Y L ++ + T + S M
Sbjct: 117 VYQLKDPRSQDSTLCLFTDFDSQINVPKTMESG 149
Score = 27.5 bits (61), Expect = 2.9
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 69 LVIDSVSARHSGNYSCTVRNMV-----AEDTQVQRLIVNVPPKIESFAFPFDGLPEGART 123
L I S Y C + V+ I N P + ++
Sbjct: 74 LHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLK------DPRSQD 127
Query: 124 RVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 180
+C T D + ++ G ++ + +++ +DS S+ +++ ++ +TC
Sbjct: 128 STLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSN----GAIAWSNQTSFTC 181
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 31.5 bits (71), Expect = 0.24
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 6/94 (6%)
Query: 122 RTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGE 177
T V+ ++ DP + W D + + + + S L I + E
Sbjct: 363 VTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKE 422
Query: 178 YTCVASNTAAQARYSSKLQVKGNLNRLPPS-YTL 210
+ C ++ A A + K P YT+
Sbjct: 423 FKCRVNSAAFPAPIEKTIS-KTKGRPKAPQLYTI 455
Score = 27.7 bits (61), Expect = 3.7
Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 25/201 (12%)
Query: 14 PTNPERTLNVGERASLICSIT---KGDIPLTIKWLKDGRYLDNSAALSITHVDQYNSMLV 70
P P+ L + + C + K D + W D + + Q+NS
Sbjct: 348 PPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREE--QFNSTFR 405
Query: 71 IDSVSA------RHSGNYSCTVRNMVAEDTQVQRLI-----VNVPPKIESFAFPFDGLPE 119
S + + C V + A +++ I P++ + P + + +
Sbjct: 406 SVSELPIMHQDWLNGKEFKCRVNS-AAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAK 464
Query: 120 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF---PVNVSDLDSFS--SLLSINSVSAA 173
+ + C +T P +T+ W +G+P P+ ++ S+ S L++ +
Sbjct: 465 DKVS-LTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTN-GSYFVYSKLNVQKSNWE 522
Query: 174 HSGEYTCVASNTAAQARYSSK 194
+TC + ++ K
Sbjct: 523 AGNTFTCSVLHEGLHNHHTEK 543
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 30.1 bits (68), Expect = 0.25
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 7 TVPPK--LSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGR 49
P+ + +P G+ L C +T+ I I+ LK+G+
Sbjct: 22 QKTPQIQVYSRHPP---ENGKPNILNCYVTQFHPPHI--EIQMLKNGK 64
Score = 27.4 bits (61), Expect = 2.2
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 102 NVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS 148
P+I+ + G + C VT PP + I+ LK+GK +
Sbjct: 22 QKTPQIQ--VYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP 67
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_B 1k8i_B*
Length = 211
Score = 30.8 bits (70), Expect = 0.29
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 19/91 (20%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVD 63
T PP + N E L C + ++ TI W K+G+ S
Sbjct: 94 TRPPSVQVA-KTTPFNTREPVMLACYVWGFYPAEV--TITWRKNGK--LVMPHSSAHKTA 148
Query: 64 QYN--------SMLVIDSVSARHSGNYSCTV 86
Q N S L ++ + Y+C V
Sbjct: 149 QPNGDWTYQTLSHLA---LTPSYGDTYTCVV 176
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 29.9 bits (67), Expect = 0.34
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 18/101 (17%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDGRYLDNSAALSITH------------------VDQ 64
VG +L C+ + T W + I + +
Sbjct: 11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISE 70
Query: 65 YNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
+ L I++ SG Y C V + Q + V P
Sbjct: 71 GDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111
Score = 26.0 bits (57), Expect = 6.0
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 18/72 (25%)
Query: 127 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVS------------------DLDSFSSLLSIN 168
C + T W + P S + + L+I
Sbjct: 19 CTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIE 78
Query: 169 SVSAAHSGEYTC 180
+ + SG Y C
Sbjct: 79 NSVESDSGLYCC 90
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 30.2 bits (69), Expect = 0.39
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 125 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEY 178
++C P +T+ W DG + + + + + SS L++ S EY
Sbjct: 134 IVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEY 193
Query: 179 TCVASN 184
TC +
Sbjct: 194 TCKVTQ 199
Score = 30.2 bits (69), Expect = 0.42
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 26 RASLICSITKGDIPLTIKWLKDGRYLDNSAALSITHVDQYN------SMLVIDSVSARHS 79
+++C K +T+ W DG S T + + S L + S
Sbjct: 131 TVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSH 190
Query: 80 GNYSCTV 86
Y+C V
Sbjct: 191 KEYTCKV 197
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 30.3 bits (69), Expect = 0.42
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 125 VICGVTHGDP-PLTIRWLKDGKP----LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
++C V P T+ W +G + P SS LS+ + +
Sbjct: 133 LVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVS 192
Query: 180 CVASN 184
C ++
Sbjct: 193 CQVTH 197
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet,
structural genomics, PSI, protein structure initiative;
NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Length = 83
Score = 28.3 bits (63), Expect = 0.54
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 119 EGARTRVICGVTH--GDPPLTIRWLKDG 144
+ I V G PP +RWL +G
Sbjct: 21 RHDQHAEIIEVRSADGSPPYVVRWLVNG 48
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 0.56
Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 16 NPERTLNVGERASLICSITKGDIPLTIKWLK----DGRYLDNSAALSITHVDQYNS---M 68
N + + GE + C + + W K L+ L + + + +
Sbjct: 21 NSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFV 80
Query: 69 LVIDSVSARHSGNYSCTVRN 88
L + +G+YSC+
Sbjct: 81 LHFKPIHLSDNGSYSCSTNF 100
Score = 26.4 bits (57), Expect = 4.7
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 120 GARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVNVSDLDSFSS---LLSINSVSA 172
G ++ C V + + W K PL + S ++ S +L +
Sbjct: 29 GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHL 88
Query: 173 AHSGEYTCVASNTA 186
+ +G Y+C + +
Sbjct: 89 SDNGSYSCSTNFNS 102
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 29.9 bits (67), Expect = 0.59
Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 24/142 (16%)
Query: 66 NSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ------RLIVN------VPPKIESFAFP 113
++ L + + CT +T +L V PP++ F
Sbjct: 73 DTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPS 132
Query: 114 FDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLDSFSSLL 165
+ + ++C T P + + W +GK + + DS +L
Sbjct: 133 EAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALS 192
Query: 166 SINSVSAA----HSGEYTCVAS 183
S VSA + C
Sbjct: 193 SRLRVSATFWQNPRNHFRCQVQ 214
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 29.9 bits (67), Expect = 0.59
Identities = 16/129 (12%), Positives = 41/129 (31%), Gaps = 22/129 (17%)
Query: 67 SMLVIDSVSARHSGNYSCTVRNMVAEDT-----------QVQRLIVNVPPKIESFAFPFD 115
S L++ + R + Y C + V I N P +
Sbjct: 70 STLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLR---- 125
Query: 116 GLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 174
+ + +C T D + ++ + +++ +D S ++V+ ++
Sbjct: 126 --DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDF----KSNSAVAWSN 179
Query: 175 SGEYTCVAS 183
++ C +
Sbjct: 180 KSDFACANA 188
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 29.7 bits (67), Expect = 0.67
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 120 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSA 172
V+C + + P + ++W DG + +D D S SS L++
Sbjct: 165 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEY 224
Query: 173 AHSGEYTCVASN 184
YTC A++
Sbjct: 225 ERHNSYTCEATH 236
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 28.5 bits (64), Expect = 0.73
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 139 RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 197
R KDG + D F I V+ +G Y+C+ S + S L++
Sbjct: 43 RLEKDGSTFMEKSTEPYKTEDEFE----IGPVNETITGHYSCIYSKGITWSERSKTLEL 97
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 29.4 bits (66), Expect = 0.77
Identities = 26/150 (17%), Positives = 42/150 (28%), Gaps = 24/150 (16%)
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQ------RLIV------NVPP 105
S + +L + SG Y C V L V PP
Sbjct: 65 SASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPP 124
Query: 106 KIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSD 157
++ F + + ++C T P + + W +GK + +
Sbjct: 125 EVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPAL 184
Query: 158 LDSFSSLLSINSVSAA----HSGEYTCVAS 183
DS +L S VSA + C
Sbjct: 185 NDSRYALSSRLRVSATFWQNPRNHFRCQVQ 214
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 29.6 bits (67), Expect = 0.78
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 125 VICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEY 178
++C +T P +T+ W DG P++ S SS L++ + + Y
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY 194
Query: 179 TCVASN 184
+C ++
Sbjct: 195 SCQVTH 200
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 29.6 bits (66), Expect = 0.79
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 11/116 (9%)
Query: 134 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS- 192
P + DG RF +++ S L I + S Y C AS A+
Sbjct: 45 PKALMSIFSDGDKKEGRFTAHLNK-ASLHVSLHIRDSQPSDSALYFCAASEQNNYAQGLT 103
Query: 193 ----SKLQVKGNLNRLPPS-YTLVFSQASYMS----TSYYSFEQDSWMIDNENYVY 239
+++ V + P+ Y L S++S S T + S S D++ Y+
Sbjct: 104 FGLGTRVSVFPYIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 159
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 29.5 bits (66), Expect = 0.85
Identities = 37/189 (19%), Positives = 56/189 (29%), Gaps = 30/189 (15%)
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVR------NMVAEDTQVQRLIV------NVPP 105
I H S L + S S Y C+ R N RL V PP
Sbjct: 91 LINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPP 150
Query: 106 KIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSD 157
++ F + + ++C T P + + W +GK + +
Sbjct: 151 EVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPAL 210
Query: 158 LDSFSSLLSINSVSAA----HSGEYTCVASNTAAQARYSSKLQVKGNLNRLPPSYTLVFS 213
DS SL S VSA + C Y + +R P +V +
Sbjct: 211 NDSRYSLSSRLRVSATFWQNPRNHFRCQVQF------YGLSENDEWTQDRAKPVTQIVSA 264
Query: 214 QASYMSTSY 222
+A S
Sbjct: 265 EAWGRSRQD 273
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold,
antibody, immune system; NMR {Homo sapiens}
Length = 376
Score = 29.5 bits (65), Expect = 0.86
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 10/138 (7%)
Query: 66 NSMLVIDSVSARHSGNYSCTVRN---MVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGAR 122
S L I + + C V + + + + P +
Sbjct: 232 VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDK 291
Query: 123 TRVICGVTHGDPP-LTIRWLKDGKPLSPRF---PVNVSDLDSFS--SLLSINSVSAAHSG 176
+ C +T P +T+ W +G+P P+ ++ +S+ S L++ +
Sbjct: 292 VSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTN-ESYFVYSKLNVQKSNWEAGN 350
Query: 177 EYTCVASNTAAQARYSSK 194
+TC + ++ K
Sbjct: 351 TFTCSVLHEGLHNHHTEK 368
>1yio_A Response regulatory protein; transcription regulation, DNA binding
protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2
c.23.1.1 PDB: 1zn2_A
Length = 208
Score = 29.2 bits (66), Expect = 0.87
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 26/101 (25%)
Query: 119 EGARTRVICGVTHGDPPLTIRWLKDG------KPLSPRFPVNVSDLDSFSSLLSINSVSA 172
++ HGD P+T+R +K G KP L L +I
Sbjct: 73 ISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEE------QAL-----LDAIEQGLQ 121
Query: 173 AHSGEYTCVASNTAAQARYSS---------KLQVKGNLNRL 204
++ + + +SS +L ++G +N+
Sbjct: 122 LNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQ 162
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 28.6 bits (63), Expect = 0.97
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 120 GARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 175
G + C V + + W K L R + + +L V +
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 85
Query: 176 GEYTCVASNTAAQ 188
G Y C A+ +
Sbjct: 86 GSYRCSANFQSNL 98
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 28.2 bits (63), Expect = 1.0
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 16/94 (17%)
Query: 128 GVTHGDPPLTIR-----------WLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 176
++ G +T+ ++ K S + + I V+ +G
Sbjct: 19 MISQGTF-VTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEF-EIGPVNETITG 76
Query: 177 EYTCVASNTAAQARYSSKLQV---KGNLNRLPPS 207
Y+C+ S + S L++ K N+ + P
Sbjct: 77 HYSCIYSKGITWSERSKTLELKVIKENVIQTPAP 110
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 28.1 bits (63), Expect = 1.1
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 129 VT---HGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSL--LSINSVSAAHSGEYTC 180
VT G + L ++ + + +VS S I+SVS ++G Y C
Sbjct: 26 VTFVCRGPVGVQTFRLERESRS-TYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRC 82
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 28.9 bits (64), Expect = 1.5
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 53 NSAALSITHVDQYNSMLVIDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNVPP 105
++ I + SG + C+V + + + V V P
Sbjct: 371 LHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKVLP 423
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 28.0 bits (62), Expect = 1.5
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 16/87 (18%)
Query: 17 PERTLNVGERASLICSITKGDIPL---TIKWLKD------------GRYLDNSAALSITH 61
PE G A L CS L ++ W +D + A L+ +
Sbjct: 15 PEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSR 74
Query: 62 VDQYNSM-LVIDSVSARHSGNYSCTVR 87
+ L I V + Y C V
Sbjct: 75 FLHDHQAELHIRDVRGHDASIYVCRVE 101
Score = 26.4 bits (58), Expect = 5.5
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 26/119 (21%)
Query: 99 LIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL---TIRWLKDGKPLSPRFPVNV 155
L V+ PP+I + EG+ + C L ++ W +D
Sbjct: 9 LWVSQPPEIRT--------LEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGT 60
Query: 156 SD-------------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS--KLQVKG 199
+ L + L I V + Y C + +L V+
Sbjct: 61 PEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVVEK 119
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 28.5 bits (63), Expect = 1.8
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 132 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 191
+T+ +L G + R + + +S+L I SG Y C A + + +
Sbjct: 40 RGRLITLFYLAQGTKENGRLKSTFNSKERYSTL-HIKDAQLEDSGTYFCAAEDGGSGNKL 98
Query: 192 S----SKLQVKGNLNRLPPSYTLVFSQASY-----MSTSYYSFEQDSWMIDNENYV 238
+ L VK N+ P+ + S + T + S +++ ++
Sbjct: 99 IFGTGTLLSVKPNIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI 154
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 28.1 bits (63), Expect = 1.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 17 PERTLNVGERASLICSITK---GDIPLTIKWLKDG 48
+ + E LIC I K + + WL++G
Sbjct: 93 TNSPVELREPNVLICFIDKFTPPVV--NVTWLRNG 125
Score = 26.6 bits (59), Expect = 6.9
Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 123 TRVICGVTHGDPP-LTIRWLKDGKPLSP 149
+IC + PP + + WL++GKP++
Sbjct: 103 NVLICFIDKFTPPVVNVTWLRNGKPVTT 130
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 28.5 bits (63), Expect = 1.9
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 142 KDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS----SKLQV 197
F S DS L SV + S Y C S ++ S +KL V
Sbjct: 62 DPVVQGVNGFEAEFSKSDSSFHL-RKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTV 120
Query: 198 KGNLNRLPPS-YTLVFSQASYMS----TSYYSFEQDSWMIDNENYV 238
N+ P+ Y L S++S S T + S S D++ Y+
Sbjct: 121 SPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYI 166
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 28.2 bits (63), Expect = 2.1
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 7 TVPPKLSPTNPERTLNVGERASLICSITK---GDIPLTIKWLKDGRYLDNSAALSITHVD 63
PP+++ P+ + +G+ +LIC I K + + WL +G + A S+
Sbjct: 84 NDPPEVT-VFPKEPVELGQPNTLICHIDKFFPPVL--NVTWLCNGELVTEGVAESLFLPR 140
Query: 64 -----QYNSMLVIDSVSARHSGNYSCTV 86
L Y C V
Sbjct: 141 TDYSFHKFHYLTFVP---SAEDFYDCRV 165
Score = 26.3 bits (58), Expect = 8.1
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 134 PPLTIRWLKDGKPLS 148
P L + WL +G+ ++
Sbjct: 115 PVLNVTWLCNGELVT 129
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.1 bits (60), Expect = 2.2
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 15/93 (16%)
Query: 23 VGERASLICSITKGDIPLTIKWLKDG-----RYLDNSAALSI-------THVDQYNSMLV 70
G +L I WL Y NS ++++ N L
Sbjct: 17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALH 76
Query: 71 IDSVSARHSGNYSCTVRNMVAEDTQVQRLIVNV 103
I +V G Y V E ++ + V
Sbjct: 77 ISNVRKEDKGTYYMRVLR---ETENELKITLEV 106
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 27.8 bits (61), Expect = 2.5
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 88 NMVAEDTQVQRLIVNVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKP 146
+ ++ I + F L G ++C V++ PP LT+ W P
Sbjct: 82 MIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNWQHHSVP 141
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 125 VICGVTHGDP-PLTIRWLKDGKPLSPRF----PVNVSDLDSFSSLLSINSVSAAHSGEYT 179
++C +++ P +T+ W +G P++ P + SS L + S +T
Sbjct: 141 LVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFT 200
Query: 180 CVAS 183
C +
Sbjct: 201 CQVT 204
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.8
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 41 TIKWLKDGR---YLDNSA-ALSI 59
+K L Y D+SA AL+I
Sbjct: 21 ALKKL-QASLKLYADDSAPALAI 42
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 27.1 bits (59), Expect = 2.8
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 40 LTIKWLKDGRYL---------------DNSAALSITHVDQYNSMLVIDSVSAR-HSGNYS 83
+ +KW GR + +SA + ++ + + ++ L +D A H+GNY+
Sbjct: 36 VYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNYT 95
Query: 84 CTVRNMVAEDTQVQRLIVNVP 104
C V + E + L V
Sbjct: 96 CEVTELTREGETIIELKYRVV 116
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 27.3 bits (60), Expect = 3.4
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 148 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS----SKLQVKGNLNR 203
S R V + SSL I + AA + Y C T+ +Y ++L+V N+
Sbjct: 58 SGRLRVTLDTSKKSSSL-LITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANIQN 116
Query: 204 LPPSY 208
P+
Sbjct: 117 PDPAV 121
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 125 VICGVTHGDP-PLTIRWLKDGKPLS----PRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 179
++C + P + + W DG P++ P +S L++ + + +
Sbjct: 134 LVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFI 193
Query: 180 CVASN 184
C ++
Sbjct: 194 CKVTH 198
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 27.3 bits (60), Expect = 4.3
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 136 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS--- 192
L + + +P F + S L +S + S Y C ++
Sbjct: 47 LLKSFTDNKRPEHQGFHATLHKSSSSFHL-QKSSAQLSDSALYYCALFLASSSFSKLVFG 105
Query: 193 --SKLQVKGNLNRLPPSYTLVFSQAS 216
+ L V N+ P+ + S
Sbjct: 106 QGTSLSVVPNIQNPEPAVYQLKDPRS 131
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 26.8 bits (59), Expect = 5.3
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 134 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS- 192
P + DG RF +S S L + + S Y C + +
Sbjct: 42 PTFLSYNVLDGLEEKGRFSSFLSR-SKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTF 100
Query: 193 ---SKLQVKGNLNRLPPSY 208
+ L V + P+
Sbjct: 101 GRGTSLIVHPYIQNPDPAV 119
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 27.0 bits (59), Expect = 5.8
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 150 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS---SKLQVKGNLNRLPP 206
R + +S+L I SG Y C A + ++LQV N+ P
Sbjct: 60 RLKSAFDSKERYSTL-HIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDP 118
Query: 207 SYTLVFSQASY-----MSTSYYSFEQDSWMIDNENYVY 239
+ + S + T + S S D++ Y+
Sbjct: 119 AVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 156
>2yzv_A ADP-ribosylglycohydrolase; all alpha protein, structural genomics,
NPPSFA, N project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 2cwc_A
2yzw_A
Length = 303
Score = 26.9 bits (60), Expect = 6.1
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 110 FAFPFDGLPEGAR-TRVICGVTHGDP 134
++ P+ R THG
Sbjct: 137 LVLAYENHPDLLSLARRAARTTHGAR 162
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 25.7 bits (56), Expect = 7.1
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 23 VGERASLICSIT--KGDIPLTIKWLKDGRYLDNSAALSIT------------------HV 62
VG+ A L CS T + + W K + +
Sbjct: 8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDL 67
Query: 63 DQYNSMLVIDSVSARHSGNYSCTVRN 88
++ + L+I +V+ G Y C ++
Sbjct: 68 NKGDVSLIIKNVTLDDHGTYCCRIQF 93
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 26.3 bits (58), Expect = 7.8
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 22/148 (14%)
Query: 58 SITHVDQYNSMLVIDSVSARHSGNYSCTVR----NMVAEDTQVQRLIV------NVPPKI 107
I H S L + S S Y C+ R RL V PP++
Sbjct: 68 LINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEV 127
Query: 108 ESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS-------PRFPVNVSDLD 159
F + + ++C T P + + W +GK + + D
Sbjct: 128 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALND 187
Query: 160 SFSSLLSINSVSAA----HSGEYTCVAS 183
S +L S VSA + C
Sbjct: 188 SRYALSSRLRVSATFWQNPRNHFRCQVQ 215
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 25.9 bits (57), Expect = 9.6
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 7 TVPPK--LSPTNPERTLNVGERASLICSITKGDI---PLTIKWLKDGR 49
P+ + P +P +G+ +LIC + +I + I WL++ +
Sbjct: 88 NEAPQATVFPKSPV---LLGQPNTLICFVD--NIFPPVINITWLRNSK 130
Score = 25.9 bits (57), Expect = 9.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 134 PPLTIRWLKDGKPLS 148
P + I WL++ K ++
Sbjct: 119 PVINITWLRNSKSVT 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,617,333
Number of extensions: 204067
Number of successful extensions: 2036
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1096
Number of HSP's successfully gapped: 604
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)