BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11135
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 273 bits (697), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+E+VPMVLVGNKCDL
Sbjct: 79 HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 138
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ VD QAQ+LA + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 139 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 185
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 271 bits (694), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/166 (79%), Positives = 141/166 (84%)
Query: 2 AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAGQ
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 62
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+E+VPMVLVGNKCDL
Sbjct: 63 EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ VD QAQ+LA + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 270 bits (691), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 2 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+E+VPMVLVGNK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ VD QAQ+LA + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 270 bits (691), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 2 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+E+VPMVLVGNK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ VD QAQ+LA + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 270 bits (690), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 132/167 (79%), Positives = 141/167 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 2 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+E+VPMVLVGNK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL 121
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ VD QAQ+LA + IPFI+TSAKTR GVDDAFYTLVREI+K K
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 268 bits (685), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/190 (70%), Positives = 150/190 (78%), Gaps = 2/190 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++ K+ + + G
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPG 180
Query: 181 GNKLKQCCVL 190
K CVL
Sbjct: 181 CMSCK--CVL 188
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/168 (77%), Positives = 142/168 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSF DI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
T VD QA ELA+ + IPFI+TSAKTR GV+DAFYTLVREI++ +M
Sbjct: 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++ K+
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/168 (76%), Positives = 143/168 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++ K+
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKL 168
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 265 bits (677), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 265 bits (677), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 8 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 67
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 68 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 127
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 128 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 265 bits (676), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/167 (76%), Positives = 142/167 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVD+YDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++ K
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 6 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 66 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 6 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 66 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGN+CDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 264 bits (674), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDP+IEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 127/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 HEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDT G
Sbjct: 1 MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIE+SYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 263 bits (673), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRD+YMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL K+ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDE+DPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 263 bits (673), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDP+IEDSYRKQVVIDGET LLDILDTAG
Sbjct: 7 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAG 66
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 67 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 126
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 127 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 263 bits (672), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
+EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 KEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 263 bits (672), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVRE ++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 263 bits (672), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDT G
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 263 bits (671), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 VEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 125/165 (75%), Positives = 141/165 (85%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFV++YDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 262 bits (669), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 GEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEE SAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 QEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 261 bits (668), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 61 IEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 6 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 65
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
EEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 66 LEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 125
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 261 bits (667), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 126/165 (76%), Positives = 140/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 260 bits (664), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 126/167 (75%), Positives = 140/167 (83%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++ K
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHK 167
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 258 bits (660), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/165 (75%), Positives = 139/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTA
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAA 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 258 bits (658), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 125/165 (75%), Positives = 139/165 (84%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALTIQLIQNHFVDE DPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
Y+L KSALTIQ IQ++FV +YDPTIEDSY KQ VID A LDILDTAGQEE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-ST 122
+ AMR+QYMRTGEGFLLVF+V SFE+I ++ QI RVKD +E PM+L+GNK DL
Sbjct: 66 FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ 125
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + Q+LA Q + +++ SAK RM VD AF+ LVR I+K
Sbjct: 126 RQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRK 168
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALT+Q +Q FVDEYDPTIEDSYRKQV +D + +L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF LV+++ + +F D+ REQI RVKD E+VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V Q Q LA Q+ N F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + +L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF LV+++ + +F D+ REQI RVKD E+VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V Q Q LA Q+ N F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/167 (53%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ YKL KSALTIQ Q FVDEYDPTIEDSYRK ID + A+LD+LDTAG
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAG 75
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEE+SAMR+QYMRTG+GFL+V++V SFE + + + I RVKD E PM+LV NK DL
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
V +Q +E+A ++NIP+I+TSAK + VD F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 177 bits (448), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + +L+ILDTAG
Sbjct: 3 MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 62
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF LV+++ + +F D+ REQI RVKD ++VPM+LVGNKCDL
Sbjct: 63 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 122
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V Q Q LA Q+ N F+++SAK+++ V++ FY LVR+I +
Sbjct: 123 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/167 (51%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKL KSALT+Q +Q FV++YDPTIEDSYRKQV +D + +L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF LV+++ + +F D+ REQI RVKD ++VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 121 S-TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V Q Q LA Q+ N F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 27 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 86
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
EGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL V + +A+ A
Sbjct: 87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 146
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
EQ+N+ +++TSAKTR VD F+ L+REI+ KM
Sbjct: 147 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 180
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 31 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
EGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL V + +A+ A
Sbjct: 91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 150
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
EQ+N+ +++TSAKTR VD F+ L+REI+ KM
Sbjct: 151 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 19 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 78
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
EGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL V + +A+ A
Sbjct: 79 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
EQ+N+ +++TSAKTR VD F+ L+REI+ KM
Sbjct: 139 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 172
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 172 bits (437), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ YKL KSALTIQ Q FVD+YDPTIEDSY K ID + A+LD+LDTAG
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEE+SAMR+QYMRTG+GFL+V++V SFE + + + I RVKD E PM+LV NK DL
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
V +Q +E+A ++NIP+I+TSAK + VD F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 172 bits (435), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ YKL KSALTIQ Q FV EYDPTIEDSY K ID + A+LD+LDTAG
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEE+SAMR+QYMRTG+GFL+V++V SFE + + + I RVKD E PM+LV NK DL
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
V +Q +E+A ++NIP+I+TSAK + VD F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAG E+Y+A+RD Y R+G
Sbjct: 19 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 78
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
EGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL V + +A+ A
Sbjct: 79 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
EQ+N+ +++TSAKTR VD F+ L+REI+ KM
Sbjct: 139 EQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 172
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 113/167 (67%), Gaps = 2/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ YKL KSALTIQ Q FV +YDPTIEDSY K ID + A+LD+LDTAG
Sbjct: 11 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 70
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEE+SAMR+QYMRTG+GFL+V++V SFE + + + I RVKD E PM+LV NK DL
Sbjct: 71 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 130
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
V +Q +E+A ++NIP+I+TSAK + VD F+ LVR I++
Sbjct: 131 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 177
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 169 bits (428), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 110/163 (67%), Gaps = 1/163 (0%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63
+KL KSALTIQ IQ++FV +YDPTIEDSY K +DG A LDILDTAGQEE
Sbjct: 10 HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69
Query: 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-ST 122
+ AMR+QYMR G GFLLVFA+N +SF ++G QI RVKD ++ P+VLVGNK DL S
Sbjct: 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V ++A ++ + + SAK R+ VD+AF LVR ++K
Sbjct: 130 RQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 169 bits (428), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 81/150 (54%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAGQE+Y+A+RD Y R+G
Sbjct: 17 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 76
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELA 134
EGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL V + +A+ A
Sbjct: 77 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 136
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
+Q+N+ +++TSAKTR VD F+ L+REI+
Sbjct: 137 DQWNVNYVETSAKTRANVDKVFFDLMREIR 166
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAG E+Y+A+RD Y R+G
Sbjct: 20 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 79
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-VPMVLVGNKCDLST-WAVDMNQAQEL 133
EGFLLVF++ +SF +REQI RVK E+ +P+++VGNK DL V + +A+
Sbjct: 80 EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSK 139
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
AE++ + +++TSAKTR VD F+ L+REI+ KM K
Sbjct: 140 AEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENK 178
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 114/159 (71%), Gaps = 2/159 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAG E+Y+A+RD Y R+G
Sbjct: 16 KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSG 75
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-VPMVLVGNKCDLST-WAVDMNQAQEL 133
EGFLLVF++ +SF +REQI RVK E+ +P+++VGNK DL V + +A+
Sbjct: 76 EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSK 135
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
AE++ + +++TSAKTR VD F+ L+REI+ KM K
Sbjct: 136 AEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSENK 174
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/164 (45%), Positives = 118/164 (71%), Gaps = 1/164 (0%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYK+ KSALT+Q + F+++YDPTIED YRK++ +D ++L+ILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E++++MRD Y++ G+GF+LV+++ + +SF+DI R+QI RVK E+VP++LVGNK DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
S V ++ + LAE++ PF++TSAK++ VD+ F +VR++
Sbjct: 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 2 AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
AE KL KSAL ++ + F+ EYDPT+E +YR Q ID E ++ILDTAGQ
Sbjct: 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQ 86
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
E+ + R+ +MR GEGF+LV+ + SFE++ + + +K + V ++LVGNK DL
Sbjct: 87 ED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMG-VDDAFYTLVREIKKDKMLR 170
+ V + ++LA + F + SA T G + + FY L RE+++ +M++
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 102/174 (58%), Gaps = 8/174 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KS+L ++ ++ F D Y PTIED+YR+ + D L I DT G ++ AM+ + G
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLSTWAVDMNQAQELA 134
F+LVF+V S +S E++G + I ++K + E++P++LVGNKCD + VD +AQ +A
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVA 140
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVR-EIKKDKMLR------GKEKKKRGISG 181
+++ F++TSAK V + F L+ E +++ L GK+K+ + G
Sbjct: 141 QEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQKRTDRVKG 194
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KS+LTIQ ++ FVD YDPTIE+++ K + ++G+ L ++DTAGQ+EYS Y
Sbjct: 19 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
G++LV++V S+KSFE I ++ + ++P++LVGNK DL + + + LA
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
E +N F+++SAK D F ++ E +K
Sbjct: 139 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 169
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KS+LTIQ ++ FVD YDPTIE+++ K + ++G+ L ++DTAGQ+EYS Y
Sbjct: 19 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 78
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
G++LV++V S+KSFE I ++ + ++P++LVGNK DL + + + LA
Sbjct: 79 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
E +N F+++SAK D F ++ E +K
Sbjct: 139 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 169
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KS+LTIQ ++ FVD YDPTIE+++ K + ++G+ L ++DTAGQ+EYS Y
Sbjct: 14 KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 73
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
G++LV++V S+KSFE I ++ + ++P++LVGNK DL + + + LA
Sbjct: 74 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 133
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
E +N F+++SAK D F ++ E +K
Sbjct: 134 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 164
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KS+LTIQ ++ FVD DPTIE+++ K + ++G+ L ++DTAGQ+EYS Y
Sbjct: 17 KSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDI 76
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
G++LV++V S+KSFE I ++ + ++P++LVGNK DL + + + LA
Sbjct: 77 NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
E +N F+++SAK D F ++ E +K
Sbjct: 137 ESWNAAFLESSAKENQTAVDVFRRIILEAEK 167
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 3 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+Y++ KS+L ++ ++ F + Y PT+ED+YR+ + D L I DT G
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 62
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLS 121
++ AM+ + G F+LV+++ S +S E++ EQI +K D E +P++LVGNKCD S
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 122 -TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
+ V ++A+ LA + F++TSAK V + F L+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 2 AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAG 60
A +KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAG
Sbjct: 5 ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE + + Y R G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL
Sbjct: 65 QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDL 123
Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+T VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 124 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE + + Y R
Sbjct: 12 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 71
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T VD A+E
Sbjct: 72 AHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF 130
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 131 ADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 162
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 135
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 144
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 145 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 188
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 125
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 126 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 169
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 152
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T EIKK
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKK 196
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL K+ L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 135
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 179
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 95/161 (59%), Gaps = 1/161 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K++L Q ++ F + YDPT+E++Y K V + + L ++DTAGQ+EYS + ++
Sbjct: 37 KTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELA 134
G++LV++V S+ SF+ I S +++ VP+VLVGNK DLS V + ++LA
Sbjct: 97 HGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA 156
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
E + F+++SA+ F +++EI + + G+E++
Sbjct: 157 ESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R +E V +LVG KCDL+T
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGIKCDLTT 127
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 128 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 171
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +S+ ++ + ++I R +E V +LVGNK DL+T
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDLTT 128
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ AF T+ EIKK
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +S+ ++ + ++I R +E V +LVGNK DL+T
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SENVNKLLVGNKSDLTT 128
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ AF T+ EIKK
Sbjct: 129 KKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKK 172
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + D Y TI ++ + + ++ +T L I DTAGQE
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
+ + Y R G ++V+ V SF+++ + ++I R E V +LVGNKCDL S
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA-MENVNKLLVGNKCDLVS 128
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V ++ +ELA+ I FI+TSAK V+ AF+T+ EIKK
Sbjct: 129 KRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKK 172
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + ++Y TI ++ K V +DG+T L I DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
+ + Y R G ++V+ V +SF + + ++I R V +LVGNKCDL
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ + A+E A+ +PF++TSA V+DAF T+ R+IK+
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + ++Y TI ++ K V +DG+T L I DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
+ + Y R G ++V+ V +SF + + ++I R V +LVGNKCDL
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ + A+E A+ +PF++TSA V+DAF T+ R+IK+
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 171
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 3/164 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS L ++ + + ++Y TI ++ K V +DG+T L I DTAGQE
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
+ + Y R G ++V+ V +SF + + ++I R V +LVGNKCDL
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKD 140
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ + A+E A+ +PF++TSA V+DAF T+ R+IK+
Sbjct: 141 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 12/157 (7%)
Query: 37 EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
ED+Y + +++DGE+A LLD+ + G+ E+ + D M+ G+ +L+V+++ SFE
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKA 99
Query: 94 GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
R Q++R + E++P++LVGNK DL V +++ + A F+ FI+TSA + V
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNV 159
Query: 153 DDAFYTLVREIKKDKMLR--GKEKKKRGISGNKLKQC 187
+ F +VR+++ LR KEK +R ++ K K+
Sbjct: 160 KELFEGIVRQVR----LRRDSKEKNERRLAYQKRKES 192
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 12/157 (7%)
Query: 37 EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
ED+Y + +++DGE+A LLD+ + G+ E+ + D M+ G+ +L+V+++ SFE
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 94 GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
R Q++R + E++P++LVGNK DL V +++ + A F+ FI+TSA + V
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159
Query: 153 DDAFYTLVREIKKDKMLR--GKEKKKRGISGNKLKQC 187
+ F +VR+++ LR KEK +R ++ K K+
Sbjct: 160 KELFEGIVRQVR----LRRDSKEKNERRLAYQKRKES 192
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 13/172 (7%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
YK+ KS+ ++L +N F + T+ ++ K +++DGE +L + DTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA--EEVPMVLVGNKCDL 120
+ ++ Y R +G LL++ V KSF +I RE + ++DA E VP++LVGNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNI---REWVDMIEDAAHETVPIMLVGNKADI 145
Query: 121 STWAVDMNQ-------AQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
A Q ++LA + F +TSAK + +A L RE+KK
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 86/144 (59%), Gaps = 10/144 (6%)
Query: 37 EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
ED+Y + +++DGE+A LLD+ + G+ E+ + D M+ G+ +L+V+++ SFE
Sbjct: 73 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 130
Query: 94 GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
R Q++R + E++P++LVGNK DL V +++ + A F+ FI+TSA + V
Sbjct: 131 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190
Query: 153 DDAFYTLVREIKKDKMLRGKEKKK 176
+ F +VR+++ LR K+K
Sbjct: 191 KELFEGIVRQVR----LRRDSKEK 210
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ +++ F + TI ++ K V I+G+ L + DTAGQE + + Y R
Sbjct: 33 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
G +LV+ V ++F +I + + + + +E ++LVGNK D+ T V +Q + LA
Sbjct: 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA 151
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
++ IPFI++SAK V++ F+TL + I++
Sbjct: 152 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ +++ F + TI ++ K V I+G+ L I DTAGQE + + Y R
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
G +LV+ + ++F +I + + + + +E ++LVGNK D+ T V +Q + LA
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA 134
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
++ IPFI++SAK V++ F+TL + I++
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 81/132 (61%), Gaps = 6/132 (4%)
Query: 37 EDSYRKQVVIDGETA---LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI 93
ED+Y + +++DGE+A LLD+ + G+ E+ + D M+ G+ +L+V+++ SFE
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 94 GSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152
R Q++R + E++P++LVGNK DL V +++ + A F+ FI+TSA + V
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 159
Query: 153 DDAFYTLVREIK 164
+ F +VR+++
Sbjct: 160 KELFEGIVRQVR 171
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ +++ F + TI ++ K V I+G+ L + DTAGQE + + Y R
Sbjct: 20 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 79
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
G +LV+ V ++F +I + + + + +E ++LVGNK D+ T V +Q + LA
Sbjct: 80 AMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMETRVVTADQGEALA 138
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
++ IPFI++SAK V++ F+TL + I++
Sbjct: 139 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ +++ F + TI ++ K V I+G+ L I DTAGQE + + Y R
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRG 75
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
G +LV+ + ++F +I + + + + +E ++LVGNK D T V +Q + LA
Sbjct: 76 AXGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDXETRVVTADQGEALA 134
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
++ IPFI++SAK V++ F+TL + I++
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ +++ F + TI ++ K V I+G+ L + DTAGQE + + Y R
Sbjct: 16 KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 75
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
G +LV+ V ++F +I + + + + +E ++LVGNK D T V +Q + LA
Sbjct: 76 AXGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDXETRVVTADQGEALA 134
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
++ IPFI++SAK V++ F+TL + I++
Sbjct: 135 KELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L Q + F ++Y TI D K+V++D + I DTAGQE + ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ +LVF V + +F+ + S+R++ +D E P V++GNK DL V +AQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVR 161
+ NIP+ +TSAK + V+ AF T+ R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEY-SAMRDQYMR 73
K+ LT + F D + TI +R++ V IDGE + + DTAGQE + +M Y R
Sbjct: 33 KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 92
Query: 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQE 132
+ V+ + +M SF + ++ E+ K+ A ++P +LVGNKCDL S V + AQ+
Sbjct: 93 NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK 152
Query: 133 LAEQFNIPFIKTSAKTRM---GVDDAFYTLVREIK 164
A+ ++P +TSAK V+ F TL ++K
Sbjct: 153 FADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 5/155 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L Q + F ++Y TI D K+V++D + I DTAGQE + ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ +LVF V + +F+ + S+R++ +D E P V++GNK DL V +AQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ NIP+ +TSAK + V+ AF T+ R K
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ + I N F +Y PT+ D++ V +DG+ L + DTAGQE+YS +R R
Sbjct: 22 KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA 81
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL---------STWAV 125
+ F+L F++ S S+E++ + +++R A VP+VLVG K DL T +
Sbjct: 82 DIFVLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVI 139
Query: 126 DMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI-----KKDKMLRGKEKKKRGI 179
Q +EL +Q +I+ S+KT+ V F T ++ + +K+ R K ++ G
Sbjct: 140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGC 199
Query: 180 S 180
S
Sbjct: 200 S 200
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL K+ + + ++ F + TI ++ + + +DG+ L I DTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
+ + Y R G +LV+ + + KSF++I ++ I+ A+ M+L GNKCD++
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVND 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
V + ++LA + I F++TSAK + V++AF+TL R+IK
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 3/163 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL K+ + + ++ F + TI ++ + + +DG+ L I DTAGQE
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS- 121
+ + Y R G +LV+ + + KSF++I ++ I+ A+ M+L GNKCD++
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVND 125
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
V + ++LA + I F++TSAK + V++AF+TL R+IK
Sbjct: 126 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 5/155 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L Q + F ++Y TI D K+V++D + I DTAGQE + ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ +LVF V + +F+ + S+R++ +D E P V++GNK D V +AQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ NIP+ +TSAK + V+ AF T+ R K
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 123
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 95/168 (56%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 122
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 5/155 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L Q + F ++Y TI D K+V++D + I DTAG E + ++ + R
Sbjct: 21 KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRG 80
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ +LVF V + +F+ + S+R++ +D E P V++GNK DL V +AQ
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ NIP+ +TSAK + V+ AF T+ R K
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 15/154 (9%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 19 KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA 78
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL-----------STW 123
+ F+L F++ S S+E++ ++ I ++ A VP++LVG K DL
Sbjct: 79 DVFILAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAV 136
Query: 124 AVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAF 156
+ NQ +EL + P +I+ S+KT+ V F
Sbjct: 137 PITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 15/159 (9%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ + I N F +Y PT+ D++ VV+DG T L + DTAGQE+Y+ +R R
Sbjct: 19 KTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL-----------STW 123
+ FLL F++ S S+E+I +++ + +K A +P+VLVG K DL
Sbjct: 79 DVFLLAFSLISKASYENI--HKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAA 136
Query: 124 AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
++ Q +EL + + +++ S+KT+ V F T +R
Sbjct: 137 SITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 6/155 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEY-SAMRDQYMR 73
K+ LT + F D + TI +R++ V IDGE + + DTAGQE + +M Y R
Sbjct: 42 KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR 101
Query: 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQE 132
+ V+ + SF + ++ E+ K+ A ++P +LVGNKCDL S V + AQ+
Sbjct: 102 NVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK 161
Query: 133 LAEQFNIPFIKTSAKTRM---GVDDAFYTLVREIK 164
A+ + P +TSAK V+ F TL ++K
Sbjct: 162 FADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS+L + + N F + TI + + + +DG L I DTAGQE + ++R + R
Sbjct: 20 KSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRG 79
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ LL F+V+ +SFE++G+++++ VKD E P V++GNK D V +AQ
Sbjct: 80 ADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQ 139
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
E + P+++TSAK V AF VR++
Sbjct: 140 TWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGE-TALLDILDTAGQEEYSAMRDQYMR 73
K++L + + + + +Y TI D K+V +DG+ A + + DTAGQE + ++ + R
Sbjct: 21 KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80
Query: 74 TGEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDL--STWAVDMN 128
+ +LV+ V + SFE+I S+R++ V E P V++GNK D S V
Sbjct: 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 140
Query: 129 QAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVR 161
AQELA+ +IP TSAK + VD AF + R
Sbjct: 141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 93/165 (56%), Gaps = 3/165 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI+ ++ Q V +D T +I DTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +F ++ ++++R + + + + L GNK D
Sbjct: 63 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKAD 121
Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
L S AV+ +AQ A+ ++ F++TSAKT M V++ F + +++
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 93/168 (55%), Gaps = 3/168 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 123
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F +TSAKT V++ F + +++ K+
Sbjct: 124 LANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 94/169 (55%), Gaps = 3/169 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 6 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTA 65
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + ++F ++ ++++R + + + + L GNK D
Sbjct: 66 GQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQR-QASPSIVIALAGNKAD 124
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
L+ V+ +AQ A+ ++ F++TSAKT M V+D F + +++ K +
Sbjct: 125 LANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSE 173
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 93/167 (55%), Gaps = 3/167 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
G E Y ++ Y R + ++V+ + + +SF ++ ++++R + + + + L GNK D
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKAD 121
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K
Sbjct: 122 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 85/161 (52%), Gaps = 15/161 (9%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F +Y PT+ D++ VV++G T L + DTAGQE+Y+ +R R
Sbjct: 21 KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGA 80
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL---------STWAV 125
+ F+L F++ S S+E++ ++ I +K A VP+VLVG K DL AV
Sbjct: 81 DVFILAFSLISKASYENVS--KKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAV 138
Query: 126 DMN--QAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVREI 163
+ Q +EL + P +I+ S+K++ V F +R +
Sbjct: 139 PITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +F ++ ++++R + + + + L GNK D
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKAD 119
Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
L S AV+ +AQ A+ ++ F++TSAKT M V++ F + +++
Sbjct: 120 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 1/166 (0%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS+L ++ + F E TI ++ K + +DG A L I DTAGQE + + Y R
Sbjct: 28 KSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRG 87
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+G +LV+ V +F + ++ +++ ++ LVGNK D VD N+ + A
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFA 147
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
+ + FI+ SAKT GV AF LV +I + L E + G S
Sbjct: 148 RKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 16 KSALTIQLIQNHFV-DEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMR 73
K+ L ++ F+ + T+ +R +V+ +DG L + DTAGQE + ++ Y R
Sbjct: 23 KTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR 82
Query: 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQE 132
LL++ V + SF++I ++ +I +V ++L+GNK D + V ++
Sbjct: 83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEK 141
Query: 133 LAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
LA+++ +PF++TSAKT + VD AF + +E+K+ M
Sbjct: 142 LAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSM 177
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS+L + + N F + TI + K + +DG + I DTAGQE + ++R + R
Sbjct: 20 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 79
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ LL F+V+ +SF+++ +++++ VK+ E P V++GNK D+S V +AQ
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 139
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
+ + P+ +TSAK V AF VR +
Sbjct: 140 AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS+L + + N F + TI + K + +DG + I DTAGQE + ++R + R
Sbjct: 22 KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 81
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ LL F+V+ +SF+++ +++++ VK+ E P V++GNK D+S V +AQ
Sbjct: 82 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 141
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
+ + P+ +TSAK V AF VR +
Sbjct: 142 AWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAGQE Y A+ Y R
Sbjct: 33 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 92
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ V M LVGNK DL AV ++A+
Sbjct: 93 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 151
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
AE+ + FI+TSA V+ AF T++ EI +
Sbjct: 152 AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 5/153 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS+L + + N F + TI + K + +DG + I DTAGQE + ++R + R
Sbjct: 24 KSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRG 83
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQI---KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131
+ LL F+V+ +SF+++ +++++ VK+ E P V++GNK D+ V +AQ
Sbjct: 84 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQ 143
Query: 132 ELA-EQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
+ + P+ +TSAK V AF VR I
Sbjct: 144 AWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L +Q F +D TI + ++V IDG+ L I DTAGQE + ++ Y R
Sbjct: 34 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
G LLV+ + ++F + S+ E ++ + V M L+GNK DL S V + +
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIM-LIGNKSDLESRRDVKREEGEAF 152
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
A + + F++TSAKT V++AF +EI +
Sbjct: 153 AREHGLIFMETSAKTACNVEEAFINTAKEIYR 184
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
K+ + N F ++ T+ +R K+VV D + A L + DTAG E +
Sbjct: 24 KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
++ + R GFLL F + S +SF ++ ++ Q++ E +VL+GNK DL
Sbjct: 84 RSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ QA+ELAE++ IP+ +TSA T V+ + TL+ I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAGQE Y A+ Y R
Sbjct: 42 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRG 101
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ V M LVGNK DL AV ++A+
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 160
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE+ + FI+TSA V+ AF T++ EI
Sbjct: 161 AEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 12/162 (7%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI------DGETA-----LLDILDTAGQEEY 64
K+ + N F ++ T+ +R++ V+ +G + L + DTAGQE +
Sbjct: 38 KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
++ + R GFLL+F + S +SF ++ ++ Q++ E +VL+GNK DL
Sbjct: 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 157
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ QA+ELA+++ IP+ +TSA T V+ A TL+ I K
Sbjct: 158 EVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
K+ + N F ++ T+ +R K+VV D + A L + DTAG E +
Sbjct: 24 KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
++ + R GFLL F + S +SF ++ ++ Q++ E +VL+GNK DL
Sbjct: 84 RSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ QA+ELAE++ IP+ +TSA T V+ + TL+ I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXK 185
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRT 74
KS++ + +Q+HF PTI S+ + V G E I DTAGQE + ++ Y R
Sbjct: 36 KSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQEL 133
++V+ + SF + + +++K E + M + GNKCDLS V + A+E
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKE-HGPENIVMAIAGNKCDLSDIREVPLKDAKEY 154
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE ++TSAK + +++ F + R+I
Sbjct: 155 AESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 4/146 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS++ + + F +Y TI D +Q+ ++ E L + DTAGQEE+ A+ Y R
Sbjct: 18 KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRG 77
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD-LSTWAVDMNQAQEL 133
+ +LVF+ +SFE I S+RE++ V + ++P LV NK D L + +A+ L
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL 135
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTL 159
A++ + F +TS K + V + F L
Sbjct: 136 AKRLKLRFYRTSVKEDLNVSEVFKYL 161
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
K+ + N F ++ T+ +R K+VV D + A L + DTAG E +
Sbjct: 24 KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
++ + R GFLL+F + S +SF ++ ++ Q++ E +VL+GNK DL
Sbjct: 84 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ QA+ELAE++ IP+ +TSA T V+ + TL+ I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 92/165 (55%), Gaps = 3/165 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTA 59
+ ++KL KS+L ++ ++ F + + TI ++ Q V +D T +I DTA
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
G E Y ++ Y R + ++V+ + + +F ++ ++++R + + + + L GNK D
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQR-QASPNIVIALAGNKAD 121
Query: 120 LST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
L++ AV+ +AQ A+ ++ F++TSAKT M V++ F + +++
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAGQE Y + Y R
Sbjct: 18 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRG 77
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ V M LVGNK DL AV ++A+
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
AE+ N+ FI+TSA V++AF ++ EI +
Sbjct: 137 AEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 12/162 (7%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETA----------LLDILDTAGQEEY 64
K+ + N F ++ T+ +R K+VV D + A L + DTAG E +
Sbjct: 24 KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGLERF 83
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
++ + R GFLL+F + S +SF ++ ++ Q++ E +VL+GNK DL
Sbjct: 84 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V+ QA+ELAE++ IP+ +TSA T V+ + TL+ I K
Sbjct: 144 EVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L +Q F +D TI + + + IDG+ L I DTAGQE + ++ Y R
Sbjct: 23 KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG 82
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
G LLV+ + +F + ++ E ++ ++ V M L+GNK DL S V + +
Sbjct: 83 AAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIM-LIGNKSDLESRREVKKEEGEAF 141
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A + + F++TSAKT V++AF +EI
Sbjct: 142 AREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 81/152 (53%), Gaps = 3/152 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS+L ++ +++ FV+ + TI ++ Q + ++ T +I DTAGQE Y ++ Y R
Sbjct: 25 KSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRG 84
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD-LSTWAVDMNQAQEL 133
++VF V + SFE + ++++ + V M L GNK D L V AQ
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLLDARKVTAEDAQTY 143
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
A++ + F++TSAKT V + FY + R + +
Sbjct: 144 AQENGLFFMETSAKTATNVKEIFYEIARRLPR 175
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 39 SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
+Y + +V+DGE A L + D Q+ + M G+ +++V++V SFE R
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 99 QIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
Q++R + ++VP++LVGNK DL + V +++ + A F+ FI+TSA V F
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 158 TLVREIK 164
+VR+I+
Sbjct: 162 GVVRQIR 168
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 39 SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
+Y + +V+DGE A L + D Q+ + M G+ +++V++V SFE R
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 99 QIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
Q++R + ++VP++LVGNK DL + V +++ + A F+ FI+TSA V F
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 156
Query: 158 TLVREIK 164
+VR+I+
Sbjct: 157 GVVRQIR 163
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 39 SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
+Y + +V+DGE A L + D Q+ + M G+ +++V++V SFE R
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 99 QIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
Q++R + ++VP++LVGNK DL + V +++ + A F+ FI+TSA V F
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFE 161
Query: 158 TLVREIK 164
+VR+I+
Sbjct: 162 GVVRQIR 168
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 3/152 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAG E Y A+ Y R
Sbjct: 21 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 80
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ V M LVGNK DL AV ++A+
Sbjct: 81 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 139
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
AE+ + FI+TSA V+ AF T++ EI +
Sbjct: 140 AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L ++ +N F D++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 19 KTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 78
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
G +LV+ + SF+ + ++ ++++++ E+ + +VGNK DL V + +A+
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE TSAK G+++ F L + +
Sbjct: 138 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAG E Y A+ Y R
Sbjct: 42 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 101
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ V M LVGNK DL AV ++A+
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM-LVGNKSDLRHLRAVPTDEARAF 160
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE+ + FI+TSA V+ AF T++ EI
Sbjct: 161 AEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L ++ +N F D++ T++ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 33 KTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 92
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
G +LV+ + SF+ + ++ ++++++ E+ + +VGNK DL V + +A+
Sbjct: 93 SNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY 151
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE TSAK G+++ F L + +
Sbjct: 152 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
T+ + A+E+ + +++ SA T+ G+ F +R + ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 7/172 (4%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL KS+L ++ N F Y TI ++ + V I+GE L I DTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC-DLS 121
+ + Y R G ++V+ V S +SF ++ + +I ++ ++V +LVGNK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN--QNCDDVCRILVGNKNDDPE 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT---LVREIKKDKMLR 170
V+ A + A Q I +TSAK + V++ F LV KKD + +
Sbjct: 128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAK 179
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAG E Y A+ Y R
Sbjct: 18 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 77
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ + + LVGNK DL AV ++A+
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIXLVGNKSDLRHLRAVPTDEARAF 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE+ + FI+TSA V+ AF T++ EI
Sbjct: 137 AEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L ++ +N F D++ T+ S+ K++ I G+ L I DTAGQE + A+ Y R
Sbjct: 19 KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRD 78
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
G +LV+ + SF+ + ++ ++++++ E+ + +VGNK DL V + +A+
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESY 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE TSAK G+++ F L + +
Sbjct: 138 AESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F E TI + + + +DG+T I DTAG E Y A+ Y R
Sbjct: 24 KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRG 83
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G LLV+ + ++E++ + ++++ D+ + + LVGNK DL AV ++A+
Sbjct: 84 AVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIXLVGNKSDLRHLRAVPTDEARAF 142
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE+ + FI+TSA V+ AF T++ EI
Sbjct: 143 AEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
T+ + A+E+ + +++ SA T+ G+ F +R + K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS++ ++ + N F + +PTI ++ Q V I+ T +I DTAGQE ++++ Y R
Sbjct: 16 KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRN 75
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL----STWAVDMNQA 130
+ L+V+ V +SF + +++ + ++++ + LVGNK D V +
Sbjct: 76 AQAALVVYDVTKPQSFIKARHWVKELHE-QASKDIIIALVGNKIDXLQEGGERKVAREEG 134
Query: 131 QELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
++LAE+ + F +TSAKT V+D F + +I
Sbjct: 135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 161 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ ++ +++ SA T+ G+ F +R +
Sbjct: 134 LAPITYPQGLAMAREIG---SVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 17 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 76
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 77 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ ++ +++ SA T+ G+ F +R +
Sbjct: 135 LAPITYPQGLAMAREIG---SVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 35 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 94
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 95 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 152
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 153 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 17 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 76
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 77 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPHTPILLVGTKLDLRDDKDTIERLRDKK 134
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ ++ +++ SA T+ G+ F +R +
Sbjct: 135 LAPITYPQGLAMAREIG---SVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 26 KTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 85
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 86 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 143
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 144 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 23 KNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 82
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 83 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 141 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQE 62
+K KS L Q I+N F + + TI + +VV + G+T L I DTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y R G LLV+ + S +++ + ++ R + + ++L GNK DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD-ARTLASPNIVVILCGNKKDLDP 144
Query: 123 -WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
V +A A++ + F++TSA T V++AF R I
Sbjct: 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 79/167 (47%), Gaps = 4/167 (2%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQE 62
+KL K++ + + F + T+ ++ + V E + L I DTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
Y + Y R GF+L++ + + +SF + + QIK + ++LVGNKCD+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIK-TYSWDNAQVILVGNKCDMEE 142
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
V + Q LAEQ F + SAK + V AF LV I DKM
Sbjct: 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI-CDKM 188
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
T+ + A+E+ + +++ SA T+ G+ F +R + ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
T+ + A+E+ + +++ SA T+ G+ F +R + ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L Q + F+ + TI + +++ + G+ L I DTAGQE + A+ Y R
Sbjct: 28 KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 87
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQEL 133
G L+V+ + ++ + S+ + + + V ++L+GNK DL V +A++
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQF 146
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
AE+ + F++ SAKT V+DAF ++I ++
Sbjct: 147 AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
MA Y++ K++L D ++ ED Y + + +DGE L ++DT
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 61 QEEY--SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
E+ S ++ ++ G +++V+++ SFE R Q++R A+ VP++LVGNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 119 DLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
DL+ V + + + A F+ FI+TSA + V + F
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L ++ + + + Y TI ++ + + +DG+T L I DTAGQE + + Y R
Sbjct: 11 KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 70
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
G ++V+ V +SF ++ + ++I R +E V +LVGNKCDL+T
Sbjct: 71 AHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTT 117
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 37 EDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGS 95
ED+Y +++++D E L + D Q + +RD ++TG+ FL+VF+V +SF +
Sbjct: 58 EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 96 YREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
+++ + ++P++LVGNK DL+ + V + + + LA + I+TSA +
Sbjct: 118 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177
Query: 155 AFYTLVREIK 164
F VR+I+
Sbjct: 178 LFEGAVRQIR 187
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ FL+ F+V S SFE++ + +I + P +LVG + DL D + ++LA
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRD---DPSTIEKLA 130
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
+ P +A+ L R++K K + +RG+
Sbjct: 131 KNKQKPITPETAE----------KLARDLKAVKYVECSALTQRGL 165
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 23/178 (12%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ L+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
T+ + A+E+ + +++ SA T+ G+ F +R + ++ +++K
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAVLCPPPVKKRKRK 188
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 69.7 bits (169), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ FL+ F+V S SFE++ + +I + P +LVG + DL D + ++LA
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRD---DPSTIEKLA 130
Query: 135 EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGI 179
+ P +A+ L R++K K + +RG+
Sbjct: 131 KNKQKPITPETAE----------KLARDLKAVKYVECSALTQRGL 165
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 26/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQ---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR---EIKKDKMLRG 171
+ P +++ SAKT+ GV + F R +++K+K RG
Sbjct: 133 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNKRRRG 189
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
DI DTAGQE Y+++ Y R ++VF +++ + + ++ Q+K + ++
Sbjct: 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI---SSNYIII 151
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
LV NK D + + VD+ + Q+ A+ N+ FI+TSAKT + + FY L EI K+
Sbjct: 152 LVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 17 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 76
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 77 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 134
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 135 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 78 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 135
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 136 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 19 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 78
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 79 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 136
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 137 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 43 KTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 102
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 161 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
I DTAGQE Y A+ Y R G LLV+ + SFE+I + ++++ D+ + ++LV
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS-NIVILLV 119
Query: 115 GNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
GNK DL ++ N A + A++ + FI+TSA V+ AF+ L+ EI
Sbjct: 120 GNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 19 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 78
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 79 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 136
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 137 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSALT++ + F+ EYDP +ED+Y + +D + L ++DTA + ++Y+
Sbjct: 34 KSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIK-RVKDAE-EVPMVLVGNKCDLSTW-AVDMNQAQE 132
FL+V++V+S +SF+ SY E + K+ + +P +L+GNK D++ + V +
Sbjct: 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVA 152
Query: 133 LAEQFNIPFIKTSAKTRM-GVDDAFYTLVREIKKD 166
LA +F F + SA V F+ VRE +++
Sbjct: 153 LAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 4/153 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K++L + + F + T+ ++ K V + G+ L I DTAGQE ++++ Y R+
Sbjct: 39 KTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQEL 133
+G +LV+ + ++F+D+ + + I + +E+ ++LVGNK D T + Q ++
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKF 157
Query: 134 AEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
A+Q + F + SAK VD+ F LV +I K
Sbjct: 158 AQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 23 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 82
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 83 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 140
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 141 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++D + L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL-------------S 121
+ FL+ F++ S S+E++ + +++ P++LVG K DL
Sbjct: 76 DVFLICFSLVSPASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
+ Q LA++ + + +++ SA T+ G+ F +R + + R ++KR S
Sbjct: 134 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR---QQKRACS 190
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 18 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 78 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 135
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 136 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 19 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 78
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 79 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 136
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 137 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 26 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 85
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 86 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 143
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 144 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 43 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 103 DVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 160
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 161 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 20 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 79
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 80 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 138 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 13/171 (7%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-----------DGETALLDILDTAGQEEY 64
K+++ Q F ++ T+ +R++ V+ G+ L + DTAG E +
Sbjct: 24 KTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF 83
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW- 123
++ + R GFLL+F + + +SF ++ ++ Q++ +E +VL GNK DL
Sbjct: 84 RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR 143
Query: 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
AV +A+ELAE++ IP+ +TSA + A L+ I K +M R +K
Sbjct: 144 AVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK-RMERSVDK 193
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 20 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 79
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ L+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 80 DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 137
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 138 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 180
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ L+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 76 DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 133
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 134 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 18 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
+ P +++ SAKT+ GV + F R + + RGK+K
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 187
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 23 KNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 82
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 83 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 140
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 141 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 134
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
+ P +++ SAKT+ GV + F R + + RGK+K
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 189
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R
Sbjct: 18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ L+ F++ S SFE++ + +++ P++LVG K DL
Sbjct: 78 DVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 135
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 136 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 178
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L Q + F+ + TI + +++ + G+ L I DTAGQ + A+ Y R
Sbjct: 43 KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRG 102
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQEL 133
G L+V+ + ++ + S+ + + + V ++L+GNK DL V +A++
Sbjct: 103 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEAQRDVTYEEAKQF 161
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
AE+ + F++ SAKT V+DAF ++I ++
Sbjct: 162 AEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 194
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 21 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 80
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 135
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
+ P +++ SAKT+ GV + F R + + RGK+K
Sbjct: 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 190
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++D + L + DTAGQE+Y +R
Sbjct: 22 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 81
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL-------------S 121
+ FL+ F++ S S+E++ + +++ P++LVG K DL
Sbjct: 82 DVFLICFSLVSPASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKK 139
Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
+ Q LA++ + + +++ SA T+ G+ F +R +
Sbjct: 140 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L + + F +EY PT+ D Y V + G+ LL + DTAGQE+Y +R
Sbjct: 31 KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 90
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL----STWA------ 124
+ FL+ F+V + SF+++ E + +K+ A VP +L+G + DL T A
Sbjct: 91 DVFLICFSVVNPASFQNVK--EEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK 148
Query: 125 ---VDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ + Q Q+LA++ +++ SA T+ G+ F
Sbjct: 149 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 37 EDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGS 95
ED+Y +++++D E L + D Q + ++D ++TG+ FL+VF+V +SF +
Sbjct: 37 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96
Query: 96 YREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
+++ + ++P++LVGNK DL+ + V + + + LA + I+TSA +
Sbjct: 97 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156
Query: 155 AFYTLVREIK 164
F VR+I+
Sbjct: 157 LFEGAVRQIR 166
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L Q I+ F D+ + TI + +++ + G+ L I DTAGQE + ++ Y R
Sbjct: 23 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
G LLV+ + S +++ + ++ R+ ++ + ++L GNK DL + V +A
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRF 141
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A++ + F++TSA T V++AF R+I
Sbjct: 142 AQENELMFLETSALTGENVEEAFVQCARKI 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 134
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
+ P +++ SAKT+ GV + F R + + RGK+K
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 189
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++D + L + DTAGQE+Y +R
Sbjct: 23 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQT 82
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL-------------S 121
+ FL+ F++ S S+E++ + +++ P++LVG K DL
Sbjct: 83 DVFLICFSLVSPASYENVRAKWFPEVRH--HCPSTPIILVGTKLDLRDDKDTIEKLKEKK 140
Query: 122 TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREI 163
+ Q LA++ + + +++ SA T+ G+ F +R +
Sbjct: 141 LAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 37 EDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGS 95
ED+Y +++++D E L + D Q + ++D ++TG+ FL+VF+V +SF +
Sbjct: 47 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 106
Query: 96 YREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
+++ + ++P++LVGNK DL+ + V + + + LA + I+TSA +
Sbjct: 107 TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 166
Query: 155 AFYTLVREIK 164
F VR+I+
Sbjct: 167 LFEGAVRQIR 176
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L Q I+ F D+ + TI + +++ + G+ L I DTAGQE + ++ Y R
Sbjct: 24 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 83
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
G LLV+ + S +++ + ++ R+ ++ + ++L GNK DL + V +A
Sbjct: 84 AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRF 142
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A++ + F++TSA T V++AF R+I
Sbjct: 143 AQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY P + D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
+ P +++ SAKT+ GV + F R + + RGK+K
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 187
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
+ P +++ SAKT+ GV + F R + + RGK+K
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQAR--RGKKK 187
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 19 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 78
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 133
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F Y PT+ ++Y + +DG+ L + DTAGQE+Y R
Sbjct: 18 KTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + A+ELA
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTARELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 133 KMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 19 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 78
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 79 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 133
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 134 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 22 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 81
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 82 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 136
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 137 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 20 KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 79
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 80 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 134
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 135 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 20 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQT 79
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 80 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 137
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 138 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N EY PT+ D+Y V+I GE L + DTAGQE+Y +R
Sbjct: 16 KTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L + +N F + TI + + + I+G+ I DTAGQE Y A+ Y R
Sbjct: 26 KSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRG 85
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQEL 133
G L+V+ ++ S+E+ + +++ D + V + L+GNK DL+ AV +++
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDLAHLRAVPTEESKTF 144
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A++ + F +TSA VD AF L+ I
Sbjct: 145 AQENQLLFTETSALNSENVDKAFEELINTI 174
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 38 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQ---DEHTRRELA 152
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 17/156 (10%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V+I GE L + DTAG E+Y +R
Sbjct: 16 KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL----STW------- 123
+ FL+ F+V S SFE++ + +I + P +LVG + DL ST
Sbjct: 76 DVFLVCFSVVSPSSFENVKEKWVPEITH--HCPKTPFLLVGTQIDLRDDPSTIEKLAKNK 133
Query: 124 --AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156
+ A++LA + +++ SA T+ G+ + F
Sbjct: 134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 38 KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 98 DVILMCFSIDSPDSLENIPEKWTPEVKHF--XPNVPIILVGNKKDLRQ---DEHTRRELA 152
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 153 KMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 2 AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAG 60
++KL K++L + + + F + Y TI D K + ++ T L + DTAG
Sbjct: 1 GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE + ++ Y+R ++V+ + ++ SF+ + + + R + +V ++LVGNK DL
Sbjct: 61 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDV-RTERGSDVIIMLVGNKTDL 119
Query: 121 S-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
+ + + + ++ A++ ++ FI+TSAKT V F
Sbjct: 120 ADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 42 KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK 101
K + I G+ L I DTAGQE + + Y R+ G +L + + SF + + E ++
Sbjct: 69 KTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR 128
Query: 102 RVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL 159
+ + V + L+GNK DLS V + +AQ LAE ++I I+TSAK V++AF +
Sbjct: 129 KYAGSNIVQL-LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187
Query: 160 VREI 163
E+
Sbjct: 188 ATEL 191
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 38 KTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 97
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+V+S S E+I + + VK VP++LV NK DL + D + ELA
Sbjct: 98 DVILMCFSVDSPDSLENIPE--KWVPEVKHFCPNVPIILVANKKDLRS---DEHVRTELA 152
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
P +++ SAKT+ GV + F T R
Sbjct: 153 RMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SF + + +++ P++LVG K DL
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 286 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
+ ++KL K++L + + + F + Y TI D K + ++ T L + DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE + ++ Y+R ++V+ + ++ SF+ + + + R + +V ++LVGNK D
Sbjct: 64 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 122
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
L+ V + + + A++ N+ FI+TSAK V F
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SF + + +++ P++LVG K DL
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 286 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 130
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 131 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I N F EY PT+ D+Y V++DG+ L + DTAG E+Y +R
Sbjct: 168 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 227
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLS------------- 121
+ FL+ F++ S SF + + +++ P++LVG K DL
Sbjct: 228 DVFLICFSLVSPASFHHVRAKWYPEVRH--HCPNTPIILVGTKLDLRDDKDTIEKLKEKK 285
Query: 122 ----TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
T+ + A+E+ + +++ SA T+ G+ F +R +
Sbjct: 286 LTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDEAIRAV 328
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 16 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 75
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 76 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 130
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 131 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAGQE+Y +R
Sbjct: 18 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 77
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 78 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 132
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 133 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQE 62
+KL K++ + + F + T+ ++ + V + + L I DTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-S 121
Y + Y R GFLL++ + + +SF + + QIK + ++LVGNKCDL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIK-TYSWDNAQVILVGNKCDLED 141
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
V + LA+ F + SAK + V F LV
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 3/158 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
+ ++KL K++L + + + F + Y TI D K + ++ T L + DTA
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE + ++ Y+R ++V+ + + SF + + + R + +V ++LVGNK D
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVGNKTD 130
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
LS V + + A++ N+ FI+TSAK V F
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS L Q I+ F D+ + TI + +++ + G+ L I DTAG E + ++ Y R
Sbjct: 21 KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRG 80
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
G LLV+ + S +++ + ++ R+ ++ + ++L GNK DL + V +A
Sbjct: 81 AAGALLVYDITSRETYNALTNWLTD-ARMLASQNIVIILCGNKKDLDADREVTFLEASRF 139
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A++ + F++TSA T V++AF R+I
Sbjct: 140 AQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 81/156 (51%), Gaps = 3/156 (1%)
Query: 3 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQ 61
++KL K++L + + + F + Y TI D K + ++ T L + DTAGQ
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
E + ++ Y+R ++V+ + ++ SF+ + + + R + +V ++LVGNK DL+
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLA 119
Query: 122 -TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
V + + + A++ N+ FI+TSAK V F
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 42/185 (22%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD-QYMRT 74
K+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y +R Y +T
Sbjct: 18 KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 77
Query: 75 -GEG-----------------FLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVG 115
GE FL+ F++ S SFE++ + +++ P++LVG
Sbjct: 78 VGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVG 135
Query: 116 NKCDLS-----------------TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158
K DL T+ + A+E+ + +++ SA T+ G+ F
Sbjct: 136 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA---VKYLECSALTQRGLKTVFDE 192
Query: 159 LVREI 163
+R +
Sbjct: 193 AIRAV 197
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 3/147 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAMRDQYMRT 74
K++ + + F + T+ ++ + + + + L I DTAGQE Y + Y R
Sbjct: 18 KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRG 77
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQEL 133
GF+L++ + + +SF + + QIK + ++LVGNKCD+ V + ++L
Sbjct: 78 AMGFILMYDITNEESFNAVQDWSTQIK-TYSWDNAQVLLVGNKCDMEDERVVSSERGRQL 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLV 160
A+ F + SAK + V F LV
Sbjct: 137 ADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS++ + +++ F +PTI S+ K V E I DTAGQE + A+ Y R
Sbjct: 18 KSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRG 77
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ-AQEL 133
++V+ + ++F + ++ ++++ + + + GNKCDL+ M + A++
Sbjct: 78 SAAAIIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDY 136
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A+ + F++TSAK + +++ F + R I
Sbjct: 137 ADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAMRDQYMRT 74
K+ L + +N F + TI + + V+ G A+ I DTAG E Y A+ Y R
Sbjct: 23 KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 82
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV--LVGNKCDLS-TWAVDMNQAQ 131
G LLVF + +++ + + +K + D E +V LVGNK DLS V +A+
Sbjct: 83 AVGALLVFDLTKHQTYAVVERW---LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 139
Query: 132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE + F++TSA V+ AF T+++EI
Sbjct: 140 MFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQEEYSAMRDQYMRT 74
K+ L + +N F + TI + + V+ G A+ I DTAG E Y A+ Y R
Sbjct: 38 KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG 97
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV--LVGNKCDLS-TWAVDMNQAQ 131
G LLVF + +++ + + +K + D E +V LVGNK DLS V +A+
Sbjct: 98 AVGALLVFDLTKHQTYAVVERW---LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEAR 154
Query: 132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AE + F++TSA V+ AF T+++EI
Sbjct: 155 MFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K++L + N + EY PT D++ V +DG L + DTAGQ+E+ +R
Sbjct: 33 KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDL 120
+ FLL F+V S SF+++ + + ++ + P++LVG + DL
Sbjct: 93 DIFLLCFSVVSPSSFQNVS--EKWVPEIRCHCPKAPIILVGTQSDL 136
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
+ ++KL K++L + + + F + Y TI D K + ++ T L + DTA
Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
G E + ++ Y+R ++V+ + ++ SF+ + + + R + +V ++LVGNK D
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 129
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
L+ V + + + A++ N+ FI+TSAK V F
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAG E+Y +R
Sbjct: 21 KTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDT 80
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F+++S S E+I + ++K VP++LVGNK DL D + +ELA
Sbjct: 81 DVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRN---DEHTRRELA 135
Query: 135 EQFNIP-----------------FIKTSAKTRMGVDDAFYTLVR 161
+ P +++ SAKT+ GV + F R
Sbjct: 136 KMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
+ ++KL K++L + + + F + Y TI D K + ++ T L + DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
G E + ++ Y+R ++V+ + ++ SF+ + + + R + +V ++LVGNK D
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 122
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
L+ V + + + A++ N+ FI+TSAK V F
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTA 59
+ ++KL K++L + + + F + Y TI D K + ++ T L + DTA
Sbjct: 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
G E + ++ Y+R ++V+ + ++ SF+ + + + R + +V ++LVGNK D
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTD 132
Query: 120 LS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156
L+ V + + + A++ N+ FI+TSAK V F
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
K+ L + Q F TI D K V I+GE L I DTAGQE + ++ Y R+
Sbjct: 39 KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRS 98
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQEL 133
+L + + +SF + + +I++ + +V VLVGNK DL+ V +A+E
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEF 157
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTL 159
+E ++ +++TSAK V+ F L
Sbjct: 158 SEAQDMYYLETSAKESDNVEKLFLDL 183
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
KS++ + +++ F +PTI S+ K V E I DTAG E + A+ Y R
Sbjct: 19 KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRG 78
Query: 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ-AQEL 133
++V+ + ++F + ++ ++++ + + + GNKCDL+ M + A++
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDY 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A+ + F++TSAK + +++ F + R I
Sbjct: 138 ADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
L I DTAG E Y + Y R GF+L + + + +SF + + QIK + ++
Sbjct: 59 LQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYS-WDNAQVL 117
Query: 113 LVGNKCDL-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
LVGNKCD V + ++LA+ F + SAK + V F LV
Sbjct: 118 LVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 2 AEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAG 60
++KL K+ + + F +Y PT+ V + ++ DTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE++ +RD Y + +++F V S +++++ ++ + RV E +P+VL GNK D+
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDI 126
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 127 KDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 3 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQ 61
+YKL K+++ + + F + Y TI D K + +D L + DTAGQ
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI--KRVKDAEEVPMVLVGNKCD 119
E + ++ Y+R ++V+ + + +SFE+ + + I +R KD V + LVGNK D
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD---VIIALVGNKTD 117
Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAK 147
L V + + A+++N F +TSAK
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAK 146
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L + + Y PT+ +++ + E +L + DTAGQEEY +R
Sbjct: 36 KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-- 132
+ LL FAVN+ SF++I + + +IK D + VLVG K DL D QE
Sbjct: 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT--VLVGLKVDLRKDGSDDVTKQEGD 153
Query: 133 -LAEQFN-IPFIKTSAKTRMGVDDAF 156
L ++ + +I+ S+ ++G+++ F
Sbjct: 154 DLCQKLGCVAYIEASSVAKIGLNEVF 179
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
I DTAG E Y A+ Y R G L+V+ ++ S+E+ + +++ D + V + L+
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENAD-DNVAVGLI 121
Query: 115 GNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
GNK DL+ AV ++A+ A + + F +TSA VD AF L+ I
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 7/146 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L + + Y PT+ +++ + E +L + DTAGQEEY +R
Sbjct: 35 KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 94
Query: 76 EGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-- 132
+ LL FAVN+ SF++I + + +IK D + VLVG K DL D QE
Sbjct: 95 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT--VLVGLKVDLRKDGSDDVTKQEGD 152
Query: 133 -LAEQFN-IPFIKTSAKTRMGVDDAF 156
L ++ + +I+ S+ ++G+++ F
Sbjct: 153 DLCQKLGCVAYIEASSVAKIGLNEVF 178
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE+Y +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 3 EYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTAGQ 61
++KL K+ + + F +Y PT+ V + ++ DTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
E++ +RD Y + +++F V S +++++ ++ + RV E +P+VL GNK D+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 128 DRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGE-TALLDILDT 58
M + K+ K++LT Q F +Y TI D + +++ + G L I D
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-PMV-LVGN 116
GQ M D+Y+ +G LLV+ + + +SFE++ + +K+V + E P+V LVGN
Sbjct: 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 117 KCDL 120
K DL
Sbjct: 124 KIDL 127
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K++L + F + Y PT+ + Y + + G+ L I DTAGQ++Y +R +
Sbjct: 47 KTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDA 106
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDL 120
LL F V S SF++I + ++ ++VP+++VG K DL
Sbjct: 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDL 150
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 54 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 111
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 112 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 23/164 (14%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+ L I + F + Y PT+ ++Y V +DG L + DTAGQE+Y +R
Sbjct: 23 KTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDS 82
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD----AEEVPMVLVGNKCDL----------- 120
L+ F+++ S E++ Q K + + + VP++LVG K DL
Sbjct: 83 NVVLICFSIDLPDSLENV-----QEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLR 137
Query: 121 --STWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVR 161
V + Q +A+Q + + SAKT GV + F R
Sbjct: 138 QEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 124 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 66 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 123
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 124 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ +RD Y + ++ F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
D+ DTAG E++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 55 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 112
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V + + N+ + SAK+ + F L R++ + L
Sbjct: 113 LCGNKVDVKERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
D+ DTAG E++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 56 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 113
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V + + N+ + SAK+ + F L R++ + L
Sbjct: 114 LCGNKVDVKERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
D+ DTAG E++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 63 FDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 120
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V + + N+ + SAK+ + F L R++ + L
Sbjct: 121 LCGNKVDVKERKVKA-KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAG E++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 57 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 114
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 115 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAG E++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 63 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 120
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 121 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 176
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAGQE++ + D Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++ DTAG E++ +RD Y + +++F V S +++++ ++ + RV E +P+V
Sbjct: 61 FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIV 118
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
L GNK D+ V ++ + N+ + SAK+ + F L R++ D L
Sbjct: 119 LCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 10/145 (6%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
KSAL + + +V E P ++K++V+DG++ LL I D G E Q+
Sbjct: 33 KSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL-----QFAAWV 86
Query: 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW---AVDMNQAQE 132
+ + VF++ SF+ + +Y ++ ++A EVPMVLVG + +S +D ++A++
Sbjct: 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK 146
Query: 133 LAEQF-NIPFIKTSAKTRMGVDDAF 156
L+ + +T A + V+ F
Sbjct: 147 LSTDLKRCTYYETCATYGLNVERVF 171
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM- 111
L +LDTAG + Y QY +LVF V+SM+SFE ++ E +K + E P+
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 112 -VLVGNKCDLST--WAVDMNQAQELAEQFNIPFIKTSA 146
VLV NK DL V ++ AQ+ A + F SA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 4 YKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID--GETALLDILDTAGQ 61
YK+ K+ +++ F Y+ T+ +D G ++ DTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
E+ + ++D Y G +L F V S + +++ + ++ + V E P+V+ NK D+
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIK 130
Query: 122 T-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161
+ E+ + N + + SAKT F L R
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+AL ++ F + Y PT+ ++Y ID + L + DT+G Y +R
Sbjct: 36 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 95
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F ++ ++ + + ++ +I+ M+LVG K DL T D++ EL+
Sbjct: 96 DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT---DVSTLVELS 150
Query: 135 EQFNIP 140
P
Sbjct: 151 NHRQTP 156
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+AL ++ F + Y PT+ ++Y ID + L + DT+G Y +R
Sbjct: 20 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 79
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F ++ ++ + + ++ +I+ M+LVG K DL T D++ EL+
Sbjct: 80 DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT---DVSTLVELS 134
Query: 135 EQFNIP 140
P
Sbjct: 135 NHRQTP 140
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+AL ++ F + Y PT+ ++Y ID + L + DT+G Y +R
Sbjct: 41 KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDS 100
Query: 76 EGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ L+ F ++ ++ + + ++ +I+ M+LVG K DL T D++ EL+
Sbjct: 101 DAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT---DVSTLVELS 155
Query: 135 EQFNIP 140
P
Sbjct: 156 NHRQTP 161
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 47 DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA 106
DGET L+ +DT G ++S + + EG LLV + + + ++ D
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDL 124
Query: 107 EEVPMVLVGNKCDLSTWAVDMNQ-AQELAEQFNI---PFIKTSAKTRMGVDDAFYTLVRE 162
E VP++ NK DL A D + A+E+ + I ++ SAKT +GV D LVR+
Sbjct: 125 EVVPVL---NKIDLP--AADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179
Query: 163 I 163
I
Sbjct: 180 I 180
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 47 DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA 106
DGET L+ +DT G ++S + + EG LLV + + + ++ D
Sbjct: 67 DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDL 124
Query: 107 EEVPMVLVGNKCDLSTWAVDMNQ-AQELAEQFNI---PFIKTSAKTRMGVDDAFYTLVRE 162
E VP++ NK DL A D + A+E+ + I ++ SAKT +GV D LVR+
Sbjct: 125 EVVPVL---NKIDLP--AADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRD 179
Query: 163 I 163
I
Sbjct: 180 I 180
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+A KL K+A+ L ++ + + Y PT+ ++Y + + + L + DT+G
Sbjct: 8 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG 67
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCD 119
Y +R + LL F ++ ++ + + +R +I + V +L+G K D
Sbjct: 68 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTD 125
Query: 120 LSTWAVDMNQAQELAEQFNIPF 141
L T D++ EL+ Q P
Sbjct: 126 LRT---DLSTLMELSHQKQAPI 144
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75
K+A+ L ++ + + Y PT+ ++Y + + + L + DT+G Y +R
Sbjct: 24 KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 83
Query: 76 EGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134
+ LL F ++ ++ + + +R +I + V +L+G K DL T D++ EL+
Sbjct: 84 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT---DLSTLMELS 138
Query: 135 EQFNIPF 141
Q P
Sbjct: 139 HQKQAPI 145
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 1 MAEYKLXXXXXXXXXKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+A KL K+A+ L ++ + + Y PT+ ++Y + + + L + DT+G
Sbjct: 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG 84
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCD 119
Y +R + LL F ++ ++ + + +R +I + V +L+G K D
Sbjct: 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTD 142
Query: 120 LSTWAVDMNQAQELAEQFNIPF 141
L T D++ EL+ Q P
Sbjct: 143 LRT---DLSTLMELSHQKQAPI 161
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
+ LDT G +SAMR + + + +LV A + + + E I+ KDA VP+V
Sbjct: 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV----ESIQHAKDA-HVPIV 108
Query: 113 LVGNKCD 119
L NKCD
Sbjct: 109 LAINKCD 115
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVP 110
L++ D GQ + Y + +L++ ++S K FE+ G ++ + VP
Sbjct: 62 LNVWDIGGQRKIRPYWRSYFENTD--ILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 119
Query: 111 MVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVRE 162
+++ NK DL T A A E+AE N+ I+ SA T GV D + +
Sbjct: 120 VLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
Query: 163 IKKDK 167
+ K
Sbjct: 176 VNAKK 180
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
L++ D GQ + Y + + V K FE+ G ++ + VP++
Sbjct: 63 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL 122
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIK 164
+ NK DL T A A E+AE N+ I+ SA T GV D + + +
Sbjct: 123 IFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 178
Query: 165 KDK 167
K
Sbjct: 179 AKK 181
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 56 LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
LDT G E ++ MR + + + +LV A + + + E I K A VP+++
Sbjct: 60 LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV----EAINHAK-AANVPIIVAI 114
Query: 116 NKCDLSTWAVDMNQAQELAEQFNIP--------FIKTSAKTRMGVD 153
NK D D QEL E +P F K SAKT+ G+D
Sbjct: 115 NKMDKPEANPD-RVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLD 159
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVP 110
L++ D GQ + Y + +L++ ++S K FE+ G ++ + VP
Sbjct: 50 LNVWDIGGQRKIRPYWRSYFENTD--ILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 107
Query: 111 MVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVRE 162
+++ NK DL T A A E+AE N+ I+ SA T GV D + +
Sbjct: 108 VLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
Query: 163 I 163
+
Sbjct: 164 V 164
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 108 EVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLVREIKK 165
E+ V+V NK DL D+ + +EL E ++ P +KTSAKT MG++ E+K
Sbjct: 115 ELETVMVINKMDLYDED-DLRKVRELEEIYSGLYPIVKTSAKTGMGIE--------ELK- 164
Query: 166 DKMLRGKEKKKRGISG 181
+ L+GK G+SG
Sbjct: 165 -EYLKGKISTMAGLSG 179
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 76 EGFLLVFAVNS--MKSFED----IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ 129
+GFLL V+ ++F+D + + Q+ + K P+V+V KCD +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKK----PIVVVLTKCDEGVERYIRDA 219
Query: 130 AQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ N+ ++TSA++ + VD AF TLV+ I K
Sbjct: 220 HTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDK 255
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 47 DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA 106
DG T L ++DT G ++S + + EG LL+ + + + ++ + ++ +D
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDL 126
Query: 107 EEVPMVLVGNKCDLSTWAVDM--NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
+P++ NK DL + VD Q +E+ I SAK +G+++ +V I
Sbjct: 127 VIIPVI---NKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183
Query: 165 KDK 167
K
Sbjct: 184 PPK 186
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVP 110
L++ D G + Y + +L++ ++S K FE+ G ++ + VP
Sbjct: 50 LNVWDIGGLRKIRPYWRSYFENTD--ILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 107
Query: 111 MVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVRE 162
+++ NK DL T A A E+AE N+ I+ SA T GV D + +
Sbjct: 108 VLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 163
Query: 163 I 163
+
Sbjct: 164 V 164
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 23 LIQNHFVDEY---DPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79
LI Y + T + Y+K++++DG+T L+ I +EE A ++ + +
Sbjct: 23 LIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLI-----REEAGAPDAKFSGWADAVI 77
Query: 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEE--VPMVLVGNKCDLSTWA---VDMNQAQEL- 133
VF++ SF+ + Q+ ++ + + LVG + +S + V +A+ L
Sbjct: 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALC 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A+ + +T A + VD F + +++
Sbjct: 138 ADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 30.8 bits (68), Expect = 0.47, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 47 DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA 106
DG T L ++DT G ++S + + EG LL+ + + + ++ + ++
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----- 123
Query: 107 EEVPMVLVGNKCDLSTWAVD--MNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
+++ ++ V NK DL + VD Q +E+ I SAK +G+++ +V I
Sbjct: 124 QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183
Query: 165 KDK 167
K
Sbjct: 184 PPK 186
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 23 LIQNHFVDEY---DPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79
LI Y + T + Y+K++++DG+T L+ I +EE A ++ + +
Sbjct: 23 LIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLI-----REEAGAPDAKFSGWADAVI 77
Query: 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEE--VPMVLVGNKCDLSTWA---VDMNQAQEL- 133
VF++ SF+ + Q+ ++ + + LVG + +S + V +A+ L
Sbjct: 78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX 137
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
A+ + +T A + VD F + +++
Sbjct: 138 ADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV---PM 111
+ D GQ+ ++ Y R EG + V N IG RE ++R+ + +E+
Sbjct: 48 VWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSR---IGEAREVMQRMLNEDELRNAAW 104
Query: 112 VLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK 143
++ NK DL + A E+ E+ + I+
Sbjct: 105 LVFANKQDLP----EAMSAAEITEKLGLHSIR 132
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV---PM 111
+ D GQ+ ++ Y R EG ++F V+S IG RE ++R+ + +E+
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEG--VIFVVDS-NDRSRIGEAREVMQRMLNEDELRNAAW 121
Query: 112 VLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK 143
++ NK DL + A E+ E+ + I+
Sbjct: 122 LVFANKQDLP----EAMSAAEITEKLGLHSIR 149
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP---M 111
+ D GQ+ ++ Y R EG + V N IG RE ++R+ + +E+
Sbjct: 65 VWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSR---IGEAREVMQRMLNEDELRNAVW 121
Query: 112 VLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK 143
++ NK DL + A E+ E+ + I+
Sbjct: 122 LVFANKQDLP----EAMSAAEITEKLGLHSIR 149
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+DT G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+DT G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+DT G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+DT G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 46 INIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 100
Query: 113 LVGNKCD 119
NK D
Sbjct: 101 AFANKMD 107
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+DT G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+DT G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125
R GE LV VN + F+ GS+ + R A + P++LVGNK DL +V
Sbjct: 67 RIGESKALV--VNIVDIFDFNGSFIPGLPRF--AADNPILLVGNKADLLPRSV 115
>pdb|2JHE|A Chain A, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
pdb|2JHE|B Chain B, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
pdb|2JHE|C Chain C, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
pdb|2JHE|D Chain D, N-Terminal Domain Of Tyrr Transcription Factor (Residues 1
- 190)
Length = 190
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 22 QLIQN-HFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80
QLI +F+ + +DS+ + VVI+G+ L++I Q+E DQ++ TG +L
Sbjct: 127 QLINGFNFLRWLESEPQDSHNEHVVINGQNFLMEITPVYLQDE----NDQHVLTGAVVML 182
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+D G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDAPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+D G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDAPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
++I+D G +++ ++ MR +G ++VF S + + E + R + +VP +
Sbjct: 79 INIIDAPGHVDFTIEVERSMRVLDGAIVVF-----DSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 113 LVGNKCD 119
NK D
Sbjct: 134 AFANKMD 140
>pdb|2A0M|A Chain A, Arginase Superfamily Protein From Trypanosoma Cruzi
Length = 316
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 39 SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE 98
+ Q V D + L+ + + + +A+ D + TG+ F V+S+KS + G
Sbjct: 192 ALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTGKNTFFSFDVDSLKSSDMPGVSCP 251
Query: 99 QIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP 140
+ E M + K + +DM++ L E++ P
Sbjct: 252 AAVGLSAQEAFDMCFLAGKTP-TVMMMDMSELNPLVEEYRSP 292
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM 111
L+++LDT G E++S D Y + +++ K ED ++ R++D P+
Sbjct: 83 LVNLLDTPGHEDFS--EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRD---TPI 137
Query: 112 VLVGNKCD 119
+ NK D
Sbjct: 138 LTFMNKLD 145
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM 111
L+++LDT G E++S D Y + +++ K ED ++ R++D P+
Sbjct: 83 LVNLLDTPGHEDFS--EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRD---TPI 137
Query: 112 VLVGNKCD 119
+ NK D
Sbjct: 138 LTFMNKLD 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,972,696
Number of Sequences: 62578
Number of extensions: 186805
Number of successful extensions: 1083
Number of sequences better than 100.0: 327
Number of HSP's better than 100.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 328
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)