Query psy11135
Match_columns 191
No_of_seqs 119 out of 1660
Neff 11.0
Searched_HMMs 46136
Date Fri Aug 16 18:53:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 7.5E-41 1.6E-45 220.2 19.2 168 3-171 9-179 (205)
2 KOG0092|consensus 100.0 5.5E-41 1.2E-45 220.1 16.8 169 2-171 4-174 (200)
3 cd04144 Ras2 Ras2 subfamily. 100.0 4.1E-39 8.9E-44 222.0 21.6 187 5-191 1-190 (190)
4 KOG0094|consensus 100.0 2.3E-39 5E-44 212.6 18.5 168 1-168 20-189 (221)
5 PTZ00369 Ras-like protein; Pro 100.0 2.2E-37 4.7E-42 213.3 22.6 166 1-166 3-169 (189)
6 KOG0078|consensus 100.0 1.8E-37 3.9E-42 207.1 20.8 167 3-170 12-180 (207)
7 cd01875 RhoG RhoG subfamily. 100.0 3.3E-37 7.1E-42 212.5 22.7 163 1-165 1-178 (191)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.6E-37 1.9E-41 212.2 23.0 185 4-188 1-201 (201)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1.5E-36 3.3E-41 207.9 23.5 161 3-165 6-168 (189)
10 KOG0080|consensus 100.0 1.2E-37 2.5E-42 198.4 16.3 169 3-171 11-181 (209)
11 KOG0079|consensus 100.0 1.1E-37 2.4E-42 195.8 15.9 183 4-188 9-198 (198)
12 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.9E-36 6.2E-41 204.6 21.9 164 2-165 1-165 (172)
13 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.2E-36 6.9E-41 211.4 22.5 163 2-166 12-190 (232)
14 KOG0394|consensus 100.0 5.4E-37 1.2E-41 199.6 17.0 167 3-169 9-183 (210)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.7E-36 5.9E-41 205.8 21.4 160 2-163 4-179 (182)
16 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.5E-36 9.8E-41 209.7 22.5 162 4-167 2-179 (222)
17 cd04110 Rab35 Rab35 subfamily. 100.0 1E-35 2.3E-40 206.4 22.9 184 3-188 6-199 (199)
18 cd04133 Rop_like Rop subfamily 100.0 3.4E-36 7.3E-41 204.2 19.8 159 4-164 2-173 (176)
19 cd04132 Rho4_like Rho4-like su 100.0 8.9E-36 1.9E-40 205.1 22.2 179 4-191 1-187 (187)
20 cd04125 RabA_like RabA-like su 100.0 1.7E-35 3.6E-40 203.8 23.2 186 4-191 1-188 (188)
21 cd04112 Rab26 Rab26 subfamily. 100.0 1.3E-35 2.8E-40 204.8 22.2 184 4-188 1-191 (191)
22 cd04120 Rab12 Rab12 subfamily. 100.0 1.9E-35 4.1E-40 204.3 22.4 162 4-166 1-165 (202)
23 KOG0098|consensus 100.0 4.6E-36 9.9E-41 195.7 17.8 162 3-165 6-169 (216)
24 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-35 2.5E-40 202.3 20.6 160 3-164 1-176 (178)
25 cd04175 Rap1 Rap1 subgroup. T 100.0 1.9E-35 4.1E-40 199.4 20.9 162 3-164 1-163 (164)
26 cd04136 Rap_like Rap-like subf 100.0 1.8E-35 4E-40 199.3 20.8 161 3-163 1-162 (163)
27 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.5E-35 7.5E-40 197.6 21.8 161 3-163 1-161 (162)
28 cd04109 Rab28 Rab28 subfamily. 100.0 6.6E-35 1.4E-39 204.6 23.2 163 4-166 1-168 (215)
29 cd04126 Rab20 Rab20 subfamily. 100.0 9.4E-35 2E-39 202.9 22.5 180 4-188 1-220 (220)
30 KOG0087|consensus 100.0 2.5E-35 5.4E-40 196.1 17.8 168 3-171 14-183 (222)
31 smart00173 RAS Ras subfamily o 100.0 1.3E-34 2.8E-39 195.3 21.1 162 4-165 1-163 (164)
32 cd04122 Rab14 Rab14 subfamily. 100.0 2.6E-34 5.7E-39 194.2 22.5 162 3-165 2-165 (166)
33 cd04134 Rho3 Rho3 subfamily. 100.0 1E-34 2.2E-39 199.9 20.7 159 5-165 2-175 (189)
34 cd04111 Rab39 Rab39 subfamily. 100.0 3.8E-34 8.3E-39 199.9 23.1 164 3-166 2-168 (211)
35 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-34 6.4E-39 193.5 21.6 162 2-163 1-163 (164)
36 PLN03110 Rab GTPase; Provision 100.0 4.5E-34 9.7E-39 200.3 23.1 163 3-166 12-176 (216)
37 KOG0093|consensus 100.0 4.5E-35 9.8E-40 183.9 16.0 166 3-169 21-188 (193)
38 cd04176 Rap2 Rap2 subgroup. T 100.0 1.8E-34 3.8E-39 194.5 20.2 161 3-163 1-162 (163)
39 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.2E-34 4.8E-39 195.8 20.4 158 4-163 2-174 (175)
40 cd04127 Rab27A Rab27a subfamil 100.0 7.4E-34 1.6E-38 194.4 22.7 163 3-165 4-178 (180)
41 cd04119 RJL RJL (RabJ-Like) su 100.0 8.2E-34 1.8E-38 192.0 21.9 161 4-164 1-167 (168)
42 PLN03071 GTP-binding nuclear p 100.0 5.9E-34 1.3E-38 199.9 21.5 164 1-167 11-175 (219)
43 cd04140 ARHI_like ARHI subfami 100.0 8.5E-34 1.8E-38 191.5 21.2 159 3-161 1-162 (165)
44 PF00071 Ras: Ras family; Int 100.0 9.3E-34 2E-38 190.8 20.9 159 5-164 1-161 (162)
45 cd01867 Rab8_Rab10_Rab13_like 100.0 2.3E-33 4.9E-38 189.8 22.6 162 3-165 3-166 (167)
46 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.1E-33 4.5E-38 190.3 22.4 161 5-165 2-166 (170)
47 cd01871 Rac1_like Rac1-like su 100.0 7.3E-34 1.6E-38 193.1 20.2 157 4-162 2-173 (174)
48 cd04117 Rab15 Rab15 subfamily. 100.0 1.7E-33 3.7E-38 189.2 21.2 158 4-162 1-160 (161)
49 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3E-33 6.5E-38 189.0 22.4 161 3-164 2-164 (166)
50 cd01865 Rab3 Rab3 subfamily. 100.0 3.7E-33 7.9E-38 188.4 22.7 161 4-165 2-164 (165)
51 cd04118 Rab24 Rab24 subfamily. 100.0 4.6E-33 9.9E-38 192.5 22.4 163 4-168 1-170 (193)
52 cd04116 Rab9 Rab9 subfamily. 100.0 4.6E-33 1E-37 188.8 21.8 161 2-162 4-169 (170)
53 KOG0091|consensus 100.0 5.5E-34 1.2E-38 182.1 16.0 165 3-167 8-176 (213)
54 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.7E-33 7.9E-38 190.8 21.0 160 4-165 1-167 (182)
55 cd04177 RSR1 RSR1 subgroup. R 100.0 5E-33 1.1E-37 188.3 21.2 162 3-164 1-164 (168)
56 PLN03118 Rab family protein; P 100.0 1.3E-32 2.9E-37 192.5 23.6 164 3-167 14-180 (211)
57 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.4E-32 3E-37 186.4 22.0 162 2-163 1-168 (170)
58 cd01866 Rab2 Rab2 subfamily. 100.0 3E-32 6.5E-37 184.5 22.7 162 3-165 4-167 (168)
59 cd01868 Rab11_like Rab11-like. 100.0 2.5E-32 5.4E-37 184.4 22.2 160 3-163 3-164 (165)
60 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-32 5E-37 184.2 21.9 162 4-165 1-163 (164)
61 cd00877 Ran Ran (Ras-related n 100.0 9.5E-33 2.1E-37 186.4 20.0 159 4-165 1-160 (166)
62 cd04106 Rab23_lke Rab23-like s 100.0 1.5E-32 3.2E-37 184.9 20.8 157 4-162 1-161 (162)
63 KOG0395|consensus 100.0 5.6E-33 1.2E-37 190.3 18.9 167 1-167 1-168 (196)
64 cd01864 Rab19 Rab19 subfamily. 100.0 3.7E-32 8.1E-37 183.5 21.9 160 2-162 2-164 (165)
65 cd04137 RheB Rheb (Ras Homolog 100.0 3.1E-32 6.7E-37 186.4 21.7 164 3-166 1-165 (180)
66 cd04113 Rab4 Rab4 subfamily. 100.0 2.8E-32 6.1E-37 183.4 21.0 158 4-162 1-160 (161)
67 cd04124 RabL2 RabL2 subfamily. 100.0 3E-32 6.6E-37 183.2 21.1 159 4-166 1-160 (161)
68 smart00174 RHO Rho (Ras homolo 100.0 1.1E-32 2.3E-37 187.7 19.1 157 6-164 1-172 (174)
69 cd04103 Centaurin_gamma Centau 100.0 1.7E-32 3.7E-37 183.4 19.3 153 4-162 1-157 (158)
70 cd01873 RhoBTB RhoBTB subfamil 100.0 1.7E-32 3.7E-37 189.0 19.4 156 3-162 2-194 (195)
71 smart00175 RAB Rab subfamily o 100.0 7.5E-32 1.6E-36 181.8 22.0 161 4-165 1-163 (164)
72 cd04146 RERG_RasL11_like RERG/ 100.0 1.6E-32 3.6E-37 185.3 18.7 160 5-164 1-164 (165)
73 PLN03108 Rab family protein; P 100.0 1.3E-31 2.8E-36 187.2 23.6 163 3-166 6-170 (210)
74 KOG0088|consensus 100.0 1.2E-33 2.6E-38 179.8 11.8 168 3-171 13-182 (218)
75 cd01863 Rab18 Rab18 subfamily. 100.0 6.8E-32 1.5E-36 181.5 21.1 159 4-162 1-160 (161)
76 cd04148 RGK RGK subfamily. Th 100.0 5.4E-32 1.2E-36 190.2 21.1 164 4-169 1-168 (221)
77 cd04143 Rhes_like Rhes_like su 100.0 6.1E-32 1.3E-36 192.2 21.4 161 4-164 1-171 (247)
78 cd04135 Tc10 TC10 subfamily. 100.0 3.7E-32 8E-37 185.0 19.5 158 4-163 1-173 (174)
79 smart00176 RAN Ran (Ras-relate 100.0 5E-32 1.1E-36 187.0 20.3 155 9-166 1-156 (200)
80 KOG0095|consensus 100.0 1.4E-32 3E-37 173.4 15.8 163 3-166 7-171 (213)
81 cd01860 Rab5_related Rab5-rela 100.0 1.6E-31 3.4E-36 180.1 22.1 160 3-163 1-162 (163)
82 cd01861 Rab6 Rab6 subfamily. 100.0 1.2E-31 2.7E-36 180.2 21.1 158 4-162 1-160 (161)
83 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.7E-32 1.2E-36 183.9 19.3 156 4-161 1-171 (173)
84 cd04142 RRP22 RRP22 subfamily. 100.0 1.4E-31 3E-36 185.0 21.1 164 4-167 1-177 (198)
85 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.8E-31 3.8E-36 182.9 20.7 172 2-175 2-181 (183)
86 cd04101 RabL4 RabL4 (Rab-like4 100.0 3E-31 6.6E-36 178.9 21.5 158 4-163 1-163 (164)
87 cd00876 Ras Ras family. The R 100.0 3.1E-31 6.7E-36 178.0 20.8 158 5-162 1-159 (160)
88 cd01862 Rab7 Rab7 subfamily. 100.0 6.2E-31 1.3E-35 178.6 22.1 163 4-166 1-169 (172)
89 cd04123 Rab21 Rab21 subfamily. 100.0 8E-31 1.7E-35 176.3 21.9 159 4-163 1-161 (162)
90 cd04147 Ras_dva Ras-dva subfam 100.0 8.8E-31 1.9E-35 181.6 22.5 160 5-164 1-163 (198)
91 KOG0086|consensus 100.0 3.7E-31 8E-36 167.5 16.9 161 4-165 10-172 (214)
92 cd04129 Rho2 Rho2 subfamily. 100.0 9E-31 2E-35 180.0 20.1 173 4-190 2-187 (187)
93 cd04149 Arf6 Arf6 subfamily. 100.0 3.9E-31 8.5E-36 178.8 17.1 155 2-161 8-167 (168)
94 cd01892 Miro2 Miro2 subfamily. 100.0 6.5E-31 1.4E-35 177.9 17.9 161 2-165 3-167 (169)
95 KOG0393|consensus 100.0 6.3E-32 1.4E-36 181.3 11.8 165 2-168 3-183 (198)
96 cd01870 RhoA_like RhoA-like su 100.0 3E-30 6.6E-35 175.8 20.2 158 4-163 2-174 (175)
97 PLN00223 ADP-ribosylation fact 100.0 2E-30 4.3E-35 177.2 18.7 156 2-165 16-179 (181)
98 KOG0081|consensus 100.0 4.9E-32 1.1E-36 172.5 9.6 166 4-169 10-186 (219)
99 cd00154 Rab Rab family. Rab G 100.0 9.3E-30 2E-34 170.3 20.9 156 4-160 1-158 (159)
100 cd04158 ARD1 ARD1 subfamily. 100.0 1.9E-30 4.2E-35 175.7 17.5 158 5-167 1-164 (169)
101 cd04114 Rab30 Rab30 subfamily. 100.0 2.1E-29 4.6E-34 170.7 22.5 160 3-163 7-168 (169)
102 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2E-30 4.3E-35 173.9 16.5 153 4-161 1-158 (159)
103 smart00177 ARF ARF-like small 100.0 3.7E-30 8E-35 175.2 17.5 157 2-163 12-173 (175)
104 PTZ00133 ADP-ribosylation fact 100.0 6.6E-30 1.4E-34 174.8 17.8 159 2-165 16-179 (182)
105 cd00157 Rho Rho (Ras homology) 100.0 1.2E-29 2.6E-34 172.2 18.6 156 4-161 1-170 (171)
106 KOG0083|consensus 100.0 9.2E-32 2E-36 166.6 6.7 162 7-169 1-165 (192)
107 cd04154 Arl2 Arl2 subfamily. 100.0 2E-29 4.4E-34 171.4 18.6 155 2-161 13-172 (173)
108 KOG0097|consensus 100.0 2.4E-29 5.3E-34 157.5 16.5 161 4-165 12-174 (215)
109 cd01893 Miro1 Miro1 subfamily. 100.0 7.6E-29 1.6E-33 167.5 20.1 158 4-164 1-164 (166)
110 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.8E-30 1.3E-34 172.4 13.9 151 6-161 2-163 (164)
111 PTZ00132 GTP-binding nuclear p 100.0 3.1E-28 6.7E-33 171.0 22.0 165 1-168 7-172 (215)
112 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 8E-29 1.7E-33 168.5 16.7 155 2-161 14-173 (174)
113 cd04157 Arl6 Arl6 subfamily. 100.0 1.5E-28 3.2E-33 165.4 15.6 153 5-161 1-161 (162)
114 cd00879 Sar1 Sar1 subfamily. 100.0 5.9E-28 1.3E-32 166.6 18.6 156 2-162 18-189 (190)
115 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.1E-27 2.3E-32 165.4 18.3 147 4-150 1-176 (202)
116 cd04151 Arl1 Arl1 subfamily. 100.0 5E-28 1.1E-32 162.2 16.3 152 5-161 1-157 (158)
117 cd00878 Arf_Arl Arf (ADP-ribos 100.0 5.7E-28 1.2E-32 161.9 16.5 152 5-161 1-157 (158)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 4.3E-28 9.3E-33 162.8 15.8 153 5-161 1-159 (160)
119 cd04160 Arfrp1 Arfrp1 subfamil 100.0 1.4E-27 3.1E-32 161.4 17.5 153 5-161 1-166 (167)
120 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.9E-28 1.3E-32 163.2 14.9 152 5-161 1-166 (167)
121 smart00178 SAR Sar1p-like memb 100.0 9.8E-27 2.1E-31 159.5 18.5 156 2-162 16-183 (184)
122 cd04159 Arl10_like Arl10-like 100.0 1.9E-26 4.1E-31 154.3 17.9 153 6-161 2-158 (159)
123 PF00025 Arf: ADP-ribosylation 100.0 1.8E-26 3.9E-31 156.8 16.9 157 2-163 13-175 (175)
124 PLN00023 GTP-binding protein; 100.0 3.3E-26 7.1E-31 165.4 18.4 138 2-139 20-189 (334)
125 KOG4252|consensus 99.9 4.8E-28 1.1E-32 157.4 7.1 165 3-169 20-186 (246)
126 PTZ00099 rab6; Provisional 99.9 1.1E-25 2.3E-30 152.8 18.7 143 27-170 4-148 (176)
127 KOG0073|consensus 99.9 1.6E-25 3.4E-30 143.5 18.1 160 2-166 15-180 (185)
128 cd01898 Obg Obg subfamily. Th 99.9 7.2E-26 1.6E-30 153.5 17.3 157 5-162 2-169 (170)
129 cd01890 LepA LepA subfamily. 99.9 1.2E-25 2.6E-30 153.6 17.3 153 5-163 2-176 (179)
130 cd04155 Arl3 Arl3 subfamily. 99.9 1.9E-25 4.1E-30 151.9 18.0 152 2-161 13-172 (173)
131 PRK12299 obgE GTPase CgtA; Rev 99.9 2.3E-25 5E-30 164.3 19.3 160 5-166 160-330 (335)
132 TIGR00231 small_GTP small GTP- 99.9 5.3E-25 1.2E-29 147.1 18.3 157 3-160 1-160 (161)
133 cd01897 NOG NOG1 is a nucleola 99.9 3.4E-25 7.4E-30 149.9 17.2 154 5-163 2-167 (168)
134 PF02421 FeoB_N: Ferrous iron 99.9 8.3E-26 1.8E-30 148.3 12.4 147 4-159 1-156 (156)
135 TIGR02528 EutP ethanolamine ut 99.9 1.6E-25 3.5E-30 147.5 13.3 134 5-160 2-141 (142)
136 COG1100 GTPase SAR1 and relate 99.9 4.4E-24 9.5E-29 150.4 21.5 168 1-169 3-190 (219)
137 cd00882 Ras_like_GTPase Ras-li 99.9 4.6E-24 9.9E-29 141.5 18.6 153 8-160 1-156 (157)
138 TIGR00436 era GTP-binding prot 99.9 1.4E-24 3.1E-29 157.0 17.0 156 5-168 2-168 (270)
139 cd01878 HflX HflX subfamily. 99.9 2.3E-24 5E-29 150.2 17.0 153 3-162 41-203 (204)
140 TIGR02729 Obg_CgtA Obg family 99.9 3.2E-24 7E-29 158.1 18.4 158 5-163 159-328 (329)
141 cd04171 SelB SelB subfamily. 99.9 4.5E-24 9.7E-29 143.7 17.1 149 5-161 2-163 (164)
142 KOG0070|consensus 99.9 3E-25 6.5E-30 145.7 10.0 160 2-166 16-180 (181)
143 cd01879 FeoB Ferrous iron tran 99.9 3.3E-24 7.1E-29 143.6 15.2 147 8-163 1-156 (158)
144 PRK04213 GTP-binding protein; 99.9 2.1E-24 4.5E-29 150.2 12.9 153 3-165 9-193 (201)
145 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2E-23 4.2E-28 159.4 17.7 150 3-166 203-362 (442)
146 cd04164 trmE TrmE (MnmE, ThdF, 99.9 2.7E-23 6E-28 138.8 16.2 145 4-163 2-156 (157)
147 TIGR03156 GTP_HflX GTP-binding 99.9 5E-23 1.1E-27 153.1 18.6 151 4-162 190-350 (351)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 9.2E-23 2E-27 137.9 17.8 155 5-164 2-166 (168)
149 PRK15494 era GTPase Era; Provi 99.9 3.2E-23 7E-28 153.9 16.8 157 3-169 52-221 (339)
150 PRK03003 GTP-binding protein D 99.9 5.7E-23 1.2E-27 159.0 17.9 156 3-165 211-383 (472)
151 PRK12297 obgE GTPase CgtA; Rev 99.9 1.8E-22 3.9E-27 152.5 20.1 159 5-168 160-331 (424)
152 PRK03003 GTP-binding protein D 99.9 3.9E-23 8.5E-28 159.9 16.2 152 4-165 39-200 (472)
153 PRK05291 trmE tRNA modificatio 99.9 4.5E-23 9.8E-28 158.2 16.0 147 3-165 215-371 (449)
154 cd01881 Obg_like The Obg-like 99.9 3.1E-23 6.7E-28 141.2 13.3 153 8-162 1-175 (176)
155 cd00881 GTP_translation_factor 99.9 1.5E-22 3.3E-27 139.3 16.9 155 5-164 1-187 (189)
156 PRK12296 obgE GTPase CgtA; Rev 99.9 1.8E-22 3.8E-27 154.5 18.4 163 4-168 160-344 (500)
157 PF08477 Miro: Miro-like prote 99.9 4.1E-23 8.9E-28 132.0 12.7 115 5-119 1-119 (119)
158 cd01894 EngA1 EngA1 subfamily. 99.9 7.7E-23 1.7E-27 136.7 14.6 145 7-162 1-156 (157)
159 cd01889 SelB_euk SelB subfamil 99.9 1E-22 2.2E-27 140.6 15.3 158 4-166 1-188 (192)
160 KOG3883|consensus 99.9 3.2E-22 6.8E-27 127.1 16.0 164 3-166 9-177 (198)
161 PRK15467 ethanolamine utilizat 99.9 1.3E-22 2.9E-27 135.5 15.2 141 5-166 3-149 (158)
162 cd01891 TypA_BipA TypA (tyrosi 99.9 1.3E-22 2.8E-27 140.3 15.5 146 5-155 4-173 (194)
163 cd04163 Era Era subfamily. Er 99.9 2.8E-22 6.2E-27 135.1 16.5 155 1-162 1-167 (168)
164 PRK12298 obgE GTPase CgtA; Rev 99.9 4.1E-22 8.9E-27 149.8 18.2 163 5-168 161-337 (390)
165 cd04105 SR_beta Signal recogni 99.9 4.6E-22 1E-26 138.1 16.8 118 5-122 2-123 (203)
166 COG1160 Predicted GTPases [Gen 99.9 6.8E-23 1.5E-27 152.1 13.1 177 3-190 3-194 (444)
167 TIGR03594 GTPase_EngA ribosome 99.9 4E-22 8.6E-27 153.4 17.8 156 3-165 172-345 (429)
168 cd01895 EngA2 EngA2 subfamily. 99.9 9.4E-22 2E-26 133.4 17.7 154 2-162 1-173 (174)
169 PRK00089 era GTPase Era; Revie 99.9 3.4E-22 7.4E-27 146.4 15.6 159 2-167 4-174 (292)
170 KOG0075|consensus 99.9 1.1E-22 2.3E-27 128.3 10.6 155 2-163 19-181 (186)
171 KOG0071|consensus 99.9 6.5E-22 1.4E-26 123.8 14.0 158 2-164 16-178 (180)
172 PRK11058 GTPase HflX; Provisio 99.9 1.7E-21 3.7E-26 148.0 18.5 156 4-165 198-363 (426)
173 TIGR01393 lepA GTP-binding pro 99.9 1.6E-21 3.4E-26 153.8 18.8 156 5-166 5-182 (595)
174 COG1159 Era GTPase [General fu 99.9 8.9E-22 1.9E-26 139.0 15.3 162 1-169 4-177 (298)
175 TIGR03594 GTPase_EngA ribosome 99.9 3.6E-22 7.8E-27 153.6 14.5 150 5-165 1-161 (429)
176 KOG1673|consensus 99.9 2.5E-22 5.4E-27 127.8 11.1 162 2-165 19-187 (205)
177 cd01888 eIF2_gamma eIF2-gamma 99.9 1.3E-21 2.8E-26 136.1 15.2 159 4-165 1-200 (203)
178 PRK09554 feoB ferrous iron tra 99.9 2.3E-21 4.9E-26 156.3 18.7 154 1-163 1-167 (772)
179 PRK00093 GTP-binding protein D 99.9 1.4E-21 3E-26 150.6 16.2 147 4-163 2-161 (435)
180 PRK00454 engB GTP-binding prot 99.9 4.1E-21 8.8E-26 133.1 16.4 156 3-165 24-195 (196)
181 PRK00093 GTP-binding protein D 99.9 9.4E-21 2E-25 146.0 19.3 156 3-165 173-345 (435)
182 TIGR00487 IF-2 translation ini 99.9 5.9E-21 1.3E-25 150.0 18.2 152 2-161 86-247 (587)
183 PRK09518 bifunctional cytidyla 99.9 1E-20 2.2E-25 152.8 19.3 155 3-165 450-622 (712)
184 PF00009 GTP_EFTU: Elongation 99.9 1.1E-20 2.4E-25 130.0 16.9 156 3-164 3-187 (188)
185 TIGR03598 GTPase_YsxC ribosome 99.9 6.9E-21 1.5E-25 130.1 15.0 143 3-153 18-179 (179)
186 CHL00189 infB translation init 99.9 1.1E-20 2.5E-25 150.6 18.3 154 3-163 244-409 (742)
187 PRK09518 bifunctional cytidyla 99.9 2.9E-21 6.2E-26 155.9 15.0 150 4-165 276-437 (712)
188 TIGR00437 feoB ferrous iron tr 99.9 5.7E-21 1.2E-25 150.7 15.3 145 10-163 1-154 (591)
189 TIGR00475 selB selenocysteine- 99.9 1.8E-20 4E-25 147.7 17.1 153 4-166 1-168 (581)
190 KOG0076|consensus 99.9 3E-21 6.5E-26 125.2 10.1 160 3-166 17-189 (197)
191 COG0486 ThdF Predicted GTPase 99.9 1.7E-20 3.6E-25 139.9 15.4 152 3-166 217-378 (454)
192 cd01896 DRG The developmentall 99.9 8.6E-20 1.9E-24 129.1 18.1 152 5-164 2-226 (233)
193 COG2229 Predicted GTPase [Gene 99.9 1.2E-19 2.7E-24 119.2 17.1 156 1-162 8-176 (187)
194 PRK05433 GTP-binding protein L 99.9 7.8E-20 1.7E-24 144.4 19.2 156 5-166 9-186 (600)
195 COG1160 Predicted GTPases [Gen 99.9 3.7E-20 7.9E-25 137.7 15.5 156 3-165 178-352 (444)
196 PRK05306 infB translation init 99.9 3.8E-20 8.2E-25 148.8 16.6 152 2-162 289-450 (787)
197 cd00880 Era_like Era (E. coli 99.9 1.8E-20 3.9E-25 125.3 12.1 149 8-162 1-162 (163)
198 COG0370 FeoB Fe2+ transport sy 99.8 5.8E-20 1.2E-24 142.4 15.9 158 1-167 1-167 (653)
199 PF10662 PduV-EutP: Ethanolami 99.8 6.1E-20 1.3E-24 118.0 13.3 135 5-160 3-142 (143)
200 TIGR00491 aIF-2 translation in 99.8 3E-19 6.5E-24 140.2 17.2 155 3-165 4-217 (590)
201 KOG0072|consensus 99.8 1.7E-20 3.8E-25 118.0 7.8 161 2-166 17-181 (182)
202 COG0218 Predicted GTPase [Gene 99.8 5.7E-19 1.2E-23 118.6 15.6 154 4-165 25-198 (200)
203 cd04166 CysN_ATPS CysN_ATPS su 99.8 5E-19 1.1E-23 123.5 14.9 145 5-155 1-185 (208)
204 TIGR03680 eif2g_arch translati 99.8 3.9E-19 8.4E-24 135.3 15.3 161 1-164 2-196 (406)
205 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-18 2.4E-23 120.1 15.1 146 2-152 1-171 (195)
206 PRK12317 elongation factor 1-a 99.8 4.9E-19 1.1E-23 135.9 14.4 150 2-156 5-197 (425)
207 cd01876 YihA_EngB The YihA (En 99.8 1.9E-18 4E-23 116.7 15.7 150 5-162 1-169 (170)
208 TIGR01394 TypA_BipA GTP-bindin 99.8 9E-19 1.9E-23 138.1 15.8 157 5-166 3-193 (594)
209 KOG0096|consensus 99.8 7.2E-20 1.6E-24 120.4 8.0 161 3-166 10-171 (216)
210 TIGR00483 EF-1_alpha translati 99.8 8.2E-19 1.8E-23 134.6 14.8 149 2-155 6-198 (426)
211 PRK10218 GTP-binding protein; 99.8 2.1E-18 4.6E-23 135.9 17.3 158 4-166 6-197 (607)
212 KOG0074|consensus 99.8 3.8E-19 8.3E-24 111.7 10.4 153 2-161 16-176 (185)
213 PRK10512 selenocysteinyl-tRNA- 99.8 1.6E-18 3.5E-23 137.2 15.6 153 5-165 2-167 (614)
214 PRK04004 translation initiatio 99.8 6.8E-18 1.5E-22 133.1 18.4 155 2-164 5-218 (586)
215 cd04168 TetM_like Tet(M)-like 99.8 1.7E-18 3.7E-23 122.7 13.4 113 5-122 1-130 (237)
216 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.1E-18 6.7E-23 120.3 14.5 151 5-160 1-219 (224)
217 PRK04000 translation initiatio 99.8 3.9E-18 8.5E-23 129.8 15.5 160 2-165 8-202 (411)
218 KOG1423|consensus 99.8 5E-18 1.1E-22 120.1 14.5 161 2-166 71-273 (379)
219 cd04167 Snu114p Snu114p subfam 99.8 3.3E-18 7.2E-23 119.9 12.2 112 5-121 2-136 (213)
220 KOG4423|consensus 99.8 1.2E-20 2.5E-25 123.8 -1.4 164 4-167 26-197 (229)
221 PRK12736 elongation factor Tu; 99.8 1.3E-17 2.9E-22 126.5 14.3 156 2-164 11-201 (394)
222 cd01883 EF1_alpha Eukaryotic e 99.8 1.5E-17 3.4E-22 116.9 13.7 144 5-153 1-194 (219)
223 cd04104 p47_IIGP_like p47 (47- 99.8 1.4E-17 3E-22 115.3 13.2 159 3-169 1-189 (197)
224 COG2262 HflX GTPases [General 99.8 7.9E-17 1.7E-21 118.5 17.3 154 4-165 193-357 (411)
225 COG1084 Predicted GTPase [Gene 99.8 6.1E-17 1.3E-21 115.8 15.9 158 4-166 169-338 (346)
226 cd04169 RF3 RF3 subfamily. Pe 99.8 3E-17 6.4E-22 118.2 14.4 129 5-139 4-153 (267)
227 cd01885 EF2 EF2 (for archaea a 99.8 6.3E-17 1.4E-21 113.3 15.2 111 5-121 2-138 (222)
228 KOG1489|consensus 99.8 2.3E-17 5E-22 117.2 12.7 152 6-161 199-364 (366)
229 KOG1707|consensus 99.8 1.3E-17 2.8E-22 126.8 11.0 162 1-163 7-174 (625)
230 TIGR00485 EF-Tu translation el 99.7 1.5E-16 3.2E-21 121.0 16.7 142 2-150 11-179 (394)
231 CHL00071 tufA elongation facto 99.7 5.6E-17 1.2E-21 123.7 14.5 143 2-151 11-180 (409)
232 PRK12735 elongation factor Tu; 99.7 5.7E-17 1.2E-21 123.1 14.4 158 2-164 11-203 (396)
233 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.3E-17 5.1E-22 115.4 11.2 161 5-169 1-181 (232)
234 COG0532 InfB Translation initi 99.7 1.6E-16 3.6E-21 120.3 15.9 158 3-166 5-172 (509)
235 cd01850 CDC_Septin CDC/Septin. 99.7 6.5E-17 1.4E-21 117.0 13.0 140 3-148 4-186 (276)
236 COG1163 DRG Predicted GTPase [ 99.7 1.7E-16 3.7E-21 113.3 14.2 156 4-167 64-292 (365)
237 PF01926 MMR_HSR1: 50S ribosom 99.7 2E-16 4.3E-21 100.5 13.0 104 5-117 1-116 (116)
238 COG3596 Predicted GTPase [Gene 99.7 1E-16 2.2E-21 112.2 11.6 159 2-165 38-223 (296)
239 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.8E-15 3.8E-20 104.8 17.4 158 4-165 1-185 (196)
240 PRK00741 prfC peptide chain re 99.7 6.5E-16 1.4E-20 120.5 15.9 113 4-121 11-144 (526)
241 PLN00043 elongation factor 1-a 99.7 1.1E-15 2.3E-20 117.5 16.7 148 2-154 6-203 (447)
242 COG0536 Obg Predicted GTPase [ 99.7 4.7E-16 1E-20 111.9 13.6 160 6-168 162-337 (369)
243 TIGR02034 CysN sulfate adenyly 99.7 7.7E-16 1.7E-20 117.3 15.4 147 4-154 1-187 (406)
244 PRK00049 elongation factor Tu; 99.7 1E-15 2.2E-20 116.3 15.7 155 2-163 11-202 (396)
245 KOG1145|consensus 99.7 8.9E-16 1.9E-20 116.3 14.9 158 5-172 155-324 (683)
246 PLN03126 Elongation factor Tu; 99.7 7.9E-16 1.7E-20 118.7 15.1 145 2-151 80-249 (478)
247 cd01899 Ygr210 Ygr210 subfamil 99.7 2E-15 4.4E-20 110.9 16.2 158 6-166 1-271 (318)
248 KOG0462|consensus 99.7 2.9E-16 6.3E-21 118.8 11.8 160 5-169 62-240 (650)
249 cd04170 EF-G_bact Elongation f 99.7 4.1E-15 8.8E-20 107.8 17.0 133 5-143 1-150 (268)
250 PTZ00327 eukaryotic translatio 99.7 8.7E-16 1.9E-20 117.7 14.0 161 2-165 33-234 (460)
251 PRK05124 cysN sulfate adenylyl 99.7 1.1E-15 2.5E-20 118.2 13.9 150 2-155 26-216 (474)
252 PLN03127 Elongation factor Tu; 99.7 1.7E-15 3.8E-20 116.2 14.6 156 2-164 60-252 (447)
253 cd01886 EF-G Elongation factor 99.7 2.2E-15 4.8E-20 108.7 14.0 111 5-122 1-130 (270)
254 PTZ00141 elongation factor 1- 99.7 2E-15 4.3E-20 116.0 14.4 149 2-154 6-203 (446)
255 PF09439 SRPRB: Signal recogni 99.7 2.3E-16 5E-21 106.0 7.8 115 5-122 5-126 (181)
256 PRK13351 elongation factor G; 99.7 4.5E-15 9.6E-20 120.2 16.6 112 3-122 8-139 (687)
257 PRK05506 bifunctional sulfate 99.7 4.1E-15 8.9E-20 119.3 15.9 149 2-154 23-211 (632)
258 KOG1191|consensus 99.7 2.1E-15 4.7E-20 113.0 12.8 163 3-168 268-454 (531)
259 KOG0077|consensus 99.6 2.3E-15 5E-20 97.3 9.9 154 3-161 20-190 (193)
260 PRK09602 translation-associate 99.6 1.7E-14 3.8E-19 109.0 15.6 82 4-85 2-113 (396)
261 KOG0090|consensus 99.6 9.3E-15 2E-19 98.5 11.9 114 5-122 40-159 (238)
262 PRK12739 elongation factor G; 99.6 2.6E-14 5.6E-19 115.6 16.2 112 4-122 9-139 (691)
263 COG4917 EutP Ethanolamine util 99.6 8.9E-15 1.9E-19 90.3 9.6 136 5-161 3-143 (148)
264 PF04548 AIG1: AIG1 family; I 99.6 1E-13 2.2E-18 97.0 16.2 160 4-167 1-189 (212)
265 KOG1490|consensus 99.6 6.5E-15 1.4E-19 110.6 10.6 170 5-178 170-355 (620)
266 cd00066 G-alpha G protein alph 99.6 4.8E-14 1E-18 104.2 14.8 119 49-167 159-314 (317)
267 TIGR00503 prfC peptide chain r 99.6 2.7E-14 5.9E-19 111.6 13.7 114 4-122 12-146 (527)
268 TIGR00484 EF-G translation elo 99.6 7.3E-14 1.6E-18 113.1 16.2 137 5-149 12-171 (689)
269 PRK09866 hypothetical protein; 99.6 2.4E-13 5.2E-18 106.1 18.1 107 52-161 231-350 (741)
270 PRK00007 elongation factor G; 99.6 1.3E-13 2.9E-18 111.6 16.3 111 5-122 12-141 (693)
271 KOG1532|consensus 99.6 7.6E-15 1.6E-19 102.7 6.7 119 51-169 116-269 (366)
272 cd01853 Toc34_like Toc34-like 99.6 1.8E-13 4E-18 97.5 13.5 119 2-122 30-163 (249)
273 PRK12740 elongation factor G; 99.6 3E-13 6.5E-18 109.5 16.3 109 9-122 1-126 (668)
274 KOG3905|consensus 99.6 2.2E-13 4.7E-18 97.7 13.5 162 4-165 53-291 (473)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.6 3.3E-13 7.2E-18 97.7 14.6 119 2-122 37-167 (313)
276 COG0481 LepA Membrane GTPase L 99.5 1.4E-13 3E-18 103.1 12.0 155 7-167 13-189 (603)
277 PRK13768 GTPase; Provisional 99.5 1.2E-13 2.6E-18 99.0 10.9 112 52-165 98-248 (253)
278 smart00275 G_alpha G protein a 99.5 4.8E-13 1E-17 99.7 14.2 118 51-168 184-338 (342)
279 PRK14845 translation initiatio 99.5 9.6E-13 2.1E-17 109.0 16.1 143 14-164 472-673 (1049)
280 COG5256 TEF1 Translation elong 99.5 8E-13 1.7E-17 97.7 12.8 151 3-155 7-202 (428)
281 PRK09435 membrane ATPase/prote 99.5 7.5E-13 1.6E-17 97.6 12.6 103 50-164 148-260 (332)
282 PF05049 IIGP: Interferon-indu 99.5 1.6E-13 3.5E-18 101.8 8.9 156 3-169 35-223 (376)
283 PF03029 ATP_bind_1: Conserved 99.5 1.6E-14 3.5E-19 102.2 3.3 111 52-163 92-236 (238)
284 PF05783 DLIC: Dynein light in 99.5 2.2E-12 4.8E-17 99.0 14.9 163 3-168 25-268 (472)
285 TIGR00157 ribosome small subun 99.5 1.1E-12 2.3E-17 93.6 11.5 94 63-161 25-120 (245)
286 PTZ00258 GTP-binding protein; 99.5 3.9E-12 8.4E-17 95.5 14.7 83 3-85 21-126 (390)
287 PRK09601 GTP-binding protein Y 99.5 1.3E-11 2.9E-16 91.7 16.6 82 4-85 3-107 (364)
288 cd01882 BMS1 Bms1. Bms1 is an 99.4 2.9E-12 6.3E-17 90.4 12.4 137 3-151 39-183 (225)
289 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.3E-17 106.7 11.5 114 4-122 20-152 (720)
290 TIGR02836 spore_IV_A stage IV 99.4 8.4E-12 1.8E-16 93.0 13.8 156 3-163 17-236 (492)
291 PRK07560 elongation factor EF- 99.4 1.4E-11 3.1E-16 100.4 15.6 113 5-122 22-153 (731)
292 KOG1486|consensus 99.4 1.7E-11 3.7E-16 85.2 13.4 157 4-168 63-292 (364)
293 smart00010 small_GTPase Small 99.4 5.2E-13 1.1E-17 85.6 5.6 113 4-153 1-115 (124)
294 TIGR00101 ureG urease accessor 99.4 5.6E-12 1.2E-16 87.2 10.6 101 51-163 92-195 (199)
295 COG1217 TypA Predicted membran 99.4 6.1E-12 1.3E-16 94.3 11.0 158 5-167 7-198 (603)
296 KOG0082|consensus 99.4 2E-11 4.3E-16 89.7 13.2 124 44-169 190-349 (354)
297 COG5257 GCD11 Translation init 99.4 4.6E-12 1E-16 90.8 9.6 163 2-167 9-205 (415)
298 PF00350 Dynamin_N: Dynamin fa 99.4 9.7E-12 2.1E-16 84.0 10.7 109 6-118 1-168 (168)
299 PTZ00416 elongation factor 2; 99.4 5.9E-12 1.3E-16 103.7 11.3 112 5-121 21-157 (836)
300 KOG3886|consensus 99.4 3.8E-12 8.2E-17 87.2 7.9 162 4-169 5-183 (295)
301 PLN00116 translation elongatio 99.4 5.2E-12 1.1E-16 104.2 10.1 113 4-121 20-163 (843)
302 PF00735 Septin: Septin; Inte 99.4 3.3E-11 7.2E-16 87.4 13.0 135 3-147 4-184 (281)
303 cd01900 YchF YchF subfamily. 99.4 3.2E-11 6.9E-16 86.9 12.7 79 6-84 1-102 (274)
304 KOG0461|consensus 99.3 4.3E-11 9.4E-16 86.8 12.5 157 3-165 7-194 (522)
305 TIGR00993 3a0901s04IAP86 chlor 99.3 6.7E-11 1.4E-15 93.0 14.0 118 3-122 118-250 (763)
306 PF03308 ArgK: ArgK protein; 99.3 4.4E-12 9.6E-17 89.0 6.1 102 51-164 122-230 (266)
307 COG2895 CysN GTPases - Sulfate 99.3 4.8E-11 1E-15 86.7 11.2 147 3-153 6-192 (431)
308 KOG1707|consensus 99.3 1.1E-10 2.5E-15 89.6 13.6 157 4-167 426-586 (625)
309 TIGR00073 hypB hydrogenase acc 99.3 2.5E-11 5.4E-16 84.8 9.4 55 108-162 148-205 (207)
310 TIGR00750 lao LAO/AO transport 99.3 6.1E-11 1.3E-15 87.2 11.6 103 50-164 126-238 (300)
311 KOG1144|consensus 99.3 3.5E-11 7.6E-16 94.7 10.7 163 3-170 475-693 (1064)
312 KOG0410|consensus 99.3 1.8E-11 3.9E-16 87.9 7.7 149 5-165 180-342 (410)
313 KOG0705|consensus 99.3 4.2E-11 9.1E-16 91.4 9.5 160 1-166 28-191 (749)
314 COG4108 PrfC Peptide chain rel 99.2 1.4E-10 2.9E-15 86.6 10.9 110 6-120 15-145 (528)
315 COG3276 SelB Selenocysteine-sp 99.2 1.9E-10 4.2E-15 85.9 11.5 154 5-164 2-162 (447)
316 COG1703 ArgK Putative periplas 99.2 3.3E-10 7.1E-15 80.9 11.3 104 50-165 143-255 (323)
317 smart00053 DYNc Dynamin, GTPas 99.2 6.5E-10 1.4E-14 78.6 12.6 68 51-122 125-206 (240)
318 cd01855 YqeH YqeH. YqeH is an 99.2 1.3E-10 2.9E-15 80.0 9.0 94 64-164 24-125 (190)
319 KOG0458|consensus 99.2 1.5E-10 3.2E-15 89.0 9.5 150 3-155 177-373 (603)
320 PRK10463 hydrogenase nickel in 99.2 4.1E-11 8.9E-16 86.4 4.8 54 109-162 231-287 (290)
321 COG0480 FusA Translation elong 99.1 7.7E-10 1.7E-14 88.8 11.7 114 4-123 11-143 (697)
322 COG0378 HypB Ni2+-binding GTPa 99.1 1.4E-10 3E-15 77.9 5.6 54 110-163 144-200 (202)
323 COG5019 CDC3 Septin family pro 99.1 8.3E-09 1.8E-13 75.7 14.8 135 3-143 23-200 (373)
324 KOG2486|consensus 99.1 9.3E-11 2E-15 82.6 4.4 155 3-161 136-313 (320)
325 cd01859 MJ1464 MJ1464. This f 99.1 5.7E-10 1.2E-14 74.5 7.9 95 64-164 2-96 (156)
326 COG0012 Predicted GTPase, prob 99.1 1.3E-08 2.9E-13 75.1 15.0 83 3-85 2-108 (372)
327 KOG0463|consensus 99.1 5.4E-10 1.2E-14 82.2 7.7 159 3-167 133-360 (641)
328 KOG1547|consensus 99.1 7E-09 1.5E-13 71.9 12.2 154 3-162 46-241 (336)
329 COG0050 TufB GTPases - transla 99.0 4.6E-09 1E-13 74.9 10.8 139 3-148 12-177 (394)
330 KOG1954|consensus 99.0 6E-09 1.3E-13 76.5 11.6 113 6-122 61-225 (532)
331 KOG2655|consensus 99.0 1.3E-08 2.8E-13 75.2 13.3 142 3-149 21-202 (366)
332 KOG1143|consensus 99.0 5.3E-10 1.1E-14 82.1 6.0 155 3-163 167-386 (591)
333 KOG0468|consensus 99.0 1.7E-09 3.7E-14 84.6 8.9 113 4-121 129-262 (971)
334 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.4E-09 3E-14 71.3 6.5 54 5-61 85-138 (141)
335 KOG0085|consensus 99.0 6.8E-10 1.5E-14 76.5 5.0 122 46-167 194-352 (359)
336 cd01854 YjeQ_engC YjeQ/EngC. 99.0 4E-09 8.7E-14 77.2 8.8 88 69-161 73-161 (287)
337 TIGR03597 GTPase_YqeH ribosome 99.0 8.6E-09 1.9E-13 77.7 10.6 95 61-162 50-151 (360)
338 COG5258 GTPBP1 GTPase [General 99.0 1.8E-09 3.8E-14 79.6 6.4 157 3-165 117-339 (527)
339 PRK00098 GTPase RsgA; Reviewed 99.0 3.8E-09 8.2E-14 77.7 8.3 86 71-160 77-163 (298)
340 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.2E-09 6.9E-14 70.9 7.0 54 3-61 102-157 (157)
341 PRK12288 GTPase RsgA; Reviewed 98.9 9.9E-09 2.2E-13 76.7 10.0 86 72-161 118-205 (347)
342 PF00503 G-alpha: G-protein al 98.9 6.7E-09 1.5E-13 79.3 9.2 113 50-162 235-388 (389)
343 PRK12289 GTPase RsgA; Reviewed 98.9 9.7E-09 2.1E-13 76.8 9.6 90 67-161 82-172 (352)
344 cd04178 Nucleostemin_like Nucl 98.9 4.1E-09 9E-14 71.2 6.5 55 3-60 117-171 (172)
345 KOG3887|consensus 98.9 1.5E-08 3.3E-13 70.4 9.2 165 5-171 29-209 (347)
346 cd01849 YlqF_related_GTPase Yl 98.9 5.2E-09 1.1E-13 69.8 6.7 86 76-165 1-86 (155)
347 COG1618 Predicted nucleotide k 98.9 2.3E-07 5.1E-12 60.7 13.7 147 3-165 5-177 (179)
348 KOG1487|consensus 98.9 6.3E-09 1.4E-13 72.9 6.5 83 5-89 61-151 (358)
349 cd01858 NGP_1 NGP-1. Autoanti 98.9 7E-09 1.5E-13 69.3 6.3 92 70-164 4-95 (157)
350 TIGR03596 GTPase_YlqF ribosome 98.8 3.4E-08 7.3E-13 72.0 8.5 102 58-167 4-106 (276)
351 KOG0099|consensus 98.8 8.3E-08 1.8E-12 67.5 9.7 120 51-170 202-375 (379)
352 cd01856 YlqF YlqF. Proteins o 98.8 2.1E-08 4.7E-13 67.9 6.5 56 3-61 115-170 (171)
353 KOG0466|consensus 98.8 1.4E-08 3E-13 72.9 5.6 107 52-165 126-242 (466)
354 TIGR03596 GTPase_YlqF ribosome 98.8 2.4E-08 5.3E-13 72.7 7.1 54 3-61 118-173 (276)
355 PRK09563 rbgA GTPase YlqF; Rev 98.8 3.8E-08 8.3E-13 72.1 7.7 55 3-62 121-177 (287)
356 PF03193 DUF258: Protein of un 98.8 1E-08 2.2E-13 67.9 4.2 56 5-63 37-99 (161)
357 TIGR03348 VI_IcmF type VI secr 98.7 2.1E-07 4.6E-12 79.9 12.8 112 6-122 114-257 (1169)
358 cd01849 YlqF_related_GTPase Yl 98.7 5.5E-08 1.2E-12 64.8 7.0 53 3-60 100-154 (155)
359 COG1161 Predicted GTPases [Gen 98.7 3.6E-08 7.8E-13 73.2 6.4 55 3-62 132-188 (322)
360 COG5192 BMS1 GTP-binding prote 98.7 5.5E-07 1.2E-11 70.0 12.6 135 2-148 68-210 (1077)
361 cd01859 MJ1464 MJ1464. This f 98.7 7E-08 1.5E-12 64.4 7.0 55 3-60 101-155 (156)
362 cd01855 YqeH YqeH. YqeH is an 98.7 3.8E-08 8.3E-13 67.8 5.6 24 4-27 128-151 (190)
363 KOG0448|consensus 98.7 9.2E-07 2E-11 69.9 13.5 115 3-122 109-275 (749)
364 TIGR00092 GTP-binding protein 98.7 1.5E-07 3.2E-12 70.4 8.7 82 4-85 3-108 (368)
365 cd01856 YlqF YlqF. Proteins o 98.7 1E-07 2.2E-12 64.6 7.2 100 58-165 2-102 (171)
366 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.6E-07 3.4E-12 68.9 8.7 102 57-166 6-108 (287)
367 PF09547 Spore_IV_A: Stage IV 98.6 1.7E-06 3.7E-11 65.2 13.1 156 3-163 17-236 (492)
368 PRK12288 GTPase RsgA; Reviewed 98.6 4.5E-08 9.7E-13 73.2 4.4 55 6-63 208-269 (347)
369 PRK10416 signal recognition pa 98.6 5E-07 1.1E-11 66.9 9.5 97 49-157 195-303 (318)
370 PRK13796 GTPase YqeH; Provisio 98.6 9.6E-07 2.1E-11 66.8 11.1 94 62-162 57-157 (365)
371 cd01851 GBP Guanylate-binding 98.6 2.2E-06 4.7E-11 60.6 11.9 83 4-86 8-103 (224)
372 PRK14974 cell division protein 98.5 2.6E-07 5.6E-12 68.7 6.7 95 51-157 223-323 (336)
373 PRK12289 GTPase RsgA; Reviewed 98.5 1.8E-07 3.8E-12 70.2 5.7 23 5-27 174-196 (352)
374 TIGR03597 GTPase_YqeH ribosome 98.5 2.1E-07 4.6E-12 70.3 5.5 125 4-138 155-296 (360)
375 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 7E-07 1.5E-11 58.5 7.2 76 70-151 7-84 (141)
376 TIGR01425 SRP54_euk signal rec 98.5 3.5E-06 7.7E-11 64.5 11.8 86 50-145 182-273 (429)
377 cd03112 CobW_like The function 98.5 2.4E-06 5.2E-11 57.1 9.6 64 50-120 86-158 (158)
378 TIGR00064 ftsY signal recognit 98.5 1.3E-06 2.9E-11 63.4 8.9 96 50-157 154-261 (272)
379 TIGR00157 ribosome small subun 98.5 3.8E-07 8.3E-12 65.3 5.8 23 5-27 122-144 (245)
380 KOG1534|consensus 98.5 6.2E-07 1.4E-11 61.2 6.3 111 53-165 100-252 (273)
381 KOG1491|consensus 98.4 6.1E-07 1.3E-11 65.5 6.3 82 3-84 20-124 (391)
382 KOG0447|consensus 98.4 4.6E-05 1E-09 59.5 16.6 81 52-135 413-507 (980)
383 KOG0460|consensus 98.4 7E-06 1.5E-10 60.2 11.2 139 3-147 54-218 (449)
384 COG1162 Predicted GTPases [Gen 98.4 2E-07 4.3E-12 67.4 2.8 55 6-63 167-228 (301)
385 cd01854 YjeQ_engC YjeQ/EngC. 98.4 4.2E-07 9.2E-12 66.6 3.9 24 4-27 162-185 (287)
386 KOG0467|consensus 98.4 1.2E-06 2.5E-11 70.1 6.3 111 5-120 11-136 (887)
387 PRK13796 GTPase YqeH; Provisio 98.3 8.6E-07 1.9E-11 67.1 5.2 54 4-62 161-221 (365)
388 PRK01889 GTPase RsgA; Reviewed 98.3 4.3E-06 9.2E-11 63.2 8.5 83 72-160 110-193 (356)
389 PRK12727 flagellar biosynthesi 98.3 3.7E-05 7.9E-10 60.3 13.1 91 50-152 428-523 (559)
390 PRK00098 GTPase RsgA; Reviewed 98.3 1.1E-06 2.5E-11 64.7 4.6 24 4-27 165-188 (298)
391 KOG3859|consensus 98.3 1.2E-05 2.6E-10 57.4 9.0 58 3-60 42-104 (406)
392 COG3523 IcmF Type VI protein s 98.2 1.8E-05 4E-10 67.2 11.2 111 7-122 129-270 (1188)
393 COG0523 Putative GTPases (G3E 98.2 7.3E-05 1.6E-09 55.5 12.7 99 51-157 85-194 (323)
394 PRK14722 flhF flagellar biosyn 98.2 2.7E-05 5.8E-10 58.9 10.5 135 5-145 139-315 (374)
395 cd03110 Fer4_NifH_child This p 98.2 0.0001 2.2E-09 50.3 12.6 86 49-143 91-176 (179)
396 COG1419 FlhF Flagellar GTP-bin 98.2 3.5E-05 7.5E-10 58.2 10.7 152 5-166 205-396 (407)
397 PRK00771 signal recognition pa 98.2 5.9E-06 1.3E-10 63.7 6.5 84 52-145 177-266 (437)
398 PF00448 SRP54: SRP54-type pro 98.2 6E-05 1.3E-09 52.2 10.8 85 51-145 84-174 (196)
399 KOG0465|consensus 98.1 8.4E-06 1.8E-10 63.9 6.8 111 5-120 41-168 (721)
400 PRK11537 putative GTP-binding 98.1 0.00014 3.1E-09 54.1 12.9 95 51-156 91-196 (318)
401 PRK14721 flhF flagellar biosyn 98.1 6E-05 1.3E-09 57.9 11.1 136 5-152 193-365 (420)
402 cd03114 ArgK-like The function 98.1 2.2E-05 4.8E-10 51.8 7.6 20 6-25 2-21 (148)
403 KOG1424|consensus 98.1 5E-06 1.1E-10 63.9 5.0 54 4-61 315-369 (562)
404 PRK11889 flhF flagellar biosyn 98.1 0.00016 3.6E-09 54.9 12.6 85 51-145 321-411 (436)
405 PRK13695 putative NTPase; Prov 98.1 0.00023 5E-09 48.3 12.2 49 106-163 124-172 (174)
406 PRK12726 flagellar biosynthesi 98.1 6E-05 1.3E-09 56.9 9.8 85 51-145 286-376 (407)
407 PRK14723 flhF flagellar biosyn 98.1 6.8E-05 1.5E-09 61.4 10.8 138 5-152 187-362 (767)
408 PF02492 cobW: CobW/HypB/UreG, 98.1 1.7E-06 3.8E-11 59.0 1.6 82 51-138 85-171 (178)
409 cd03115 SRP The signal recogni 98.1 7.4E-05 1.6E-09 50.7 9.5 84 50-143 82-171 (173)
410 PRK05703 flhF flagellar biosyn 98.1 0.00016 3.4E-09 56.0 12.3 85 51-145 300-391 (424)
411 KOG0464|consensus 98.1 1.9E-06 4.1E-11 64.7 1.8 130 5-140 39-185 (753)
412 KOG0459|consensus 98.0 1.3E-05 2.7E-10 60.1 4.9 153 3-157 79-279 (501)
413 PRK10867 signal recognition pa 98.0 0.00013 2.9E-09 56.3 10.6 87 50-146 183-275 (433)
414 PRK06995 flhF flagellar biosyn 98.0 6.6E-05 1.4E-09 58.6 9.0 89 52-152 336-430 (484)
415 TIGR00959 ffh signal recogniti 97.9 3E-05 6.5E-10 59.8 6.4 87 50-146 182-274 (428)
416 COG1162 Predicted GTPases [Gen 97.9 0.00013 2.7E-09 53.2 9.2 92 67-162 72-165 (301)
417 KOG2485|consensus 97.9 1.1E-05 2.5E-10 58.4 3.6 59 3-62 143-207 (335)
418 TIGR03574 selen_PSTK L-seryl-t 97.9 0.00036 7.9E-09 50.2 10.6 20 6-25 2-21 (249)
419 TIGR02475 CobW cobalamin biosy 97.8 0.0011 2.4E-08 49.9 13.1 36 51-86 93-135 (341)
420 KOG4273|consensus 97.8 0.00047 1E-08 48.8 10.2 163 5-171 6-229 (418)
421 KOG2484|consensus 97.8 2.7E-05 5.8E-10 58.2 4.1 57 2-61 251-307 (435)
422 COG3640 CooC CO dehydrogenase 97.8 0.00051 1.1E-08 48.2 10.0 78 52-140 135-212 (255)
423 PF13207 AAA_17: AAA domain; P 97.8 2.5E-05 5.3E-10 49.7 3.4 22 5-26 1-22 (121)
424 PRK12724 flagellar biosynthesi 97.8 0.00014 3.1E-09 55.6 7.9 145 4-158 224-408 (432)
425 COG1161 Predicted GTPases [Gen 97.8 8.7E-05 1.9E-09 55.4 6.5 100 56-162 15-115 (322)
426 PRK08118 topology modulation p 97.8 2.5E-05 5.4E-10 52.7 3.3 23 5-27 3-25 (167)
427 COG0563 Adk Adenylate kinase a 97.8 2.5E-05 5.4E-10 53.2 3.2 23 4-26 1-23 (178)
428 PRK06731 flhF flagellar biosyn 97.8 0.00066 1.4E-08 49.3 10.6 86 50-145 154-245 (270)
429 cd00009 AAA The AAA+ (ATPases 97.7 0.00059 1.3E-08 44.4 9.4 24 5-28 21-44 (151)
430 PF13555 AAA_29: P-loop contai 97.7 4.2E-05 9.1E-10 42.2 3.1 20 6-25 26-45 (62)
431 PRK07261 topology modulation p 97.7 3.5E-05 7.7E-10 52.2 3.3 22 5-26 2-23 (171)
432 PRK12723 flagellar biosynthesi 97.7 0.0012 2.6E-08 50.4 11.7 91 50-152 254-351 (388)
433 KOG1970|consensus 97.7 0.00095 2.1E-08 52.3 11.1 88 76-163 195-283 (634)
434 PF03266 NTPase_1: NTPase; In 97.7 9E-05 1.9E-09 50.0 5.0 135 5-152 1-163 (168)
435 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.0006 1.3E-08 41.1 8.1 69 6-87 2-71 (99)
436 PF13671 AAA_33: AAA domain; P 97.7 4.4E-05 9.5E-10 50.0 3.1 21 6-26 2-22 (143)
437 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00036 7.7E-09 37.6 5.8 45 73-119 12-58 (58)
438 cd02019 NK Nucleoside/nucleoti 97.6 7E-05 1.5E-09 42.6 3.2 22 6-27 2-23 (69)
439 PRK08233 hypothetical protein; 97.6 7.5E-05 1.6E-09 50.9 3.7 26 1-26 1-26 (182)
440 KOG0469|consensus 97.6 9.9E-05 2.2E-09 57.1 4.6 123 5-132 21-176 (842)
441 KOG2423|consensus 97.6 2.6E-05 5.5E-10 58.5 1.4 56 2-60 306-361 (572)
442 PF13521 AAA_28: AAA domain; P 97.6 4E-05 8.7E-10 51.5 2.2 22 5-26 1-22 (163)
443 COG1116 TauB ABC-type nitrate/ 97.6 7.7E-05 1.7E-09 52.7 3.6 22 6-27 32-53 (248)
444 PRK13851 type IV secretion sys 97.6 0.00082 1.8E-08 50.6 9.0 25 3-27 162-186 (344)
445 PRK01889 GTPase RsgA; Reviewed 97.6 9E-05 2E-09 56.1 3.9 23 5-27 197-219 (356)
446 PF03215 Rad17: Rad17 cell cyc 97.5 0.0011 2.4E-08 52.6 9.7 21 6-26 48-68 (519)
447 cd02038 FleN-like FleN is a me 97.5 0.00055 1.2E-08 44.7 6.8 100 7-121 4-110 (139)
448 cd02117 NifH_like This family 97.5 0.0049 1.1E-07 43.3 12.0 90 50-143 116-207 (212)
449 COG1126 GlnQ ABC-type polar am 97.5 0.00012 2.5E-09 50.7 3.6 25 5-29 30-54 (240)
450 PRK14737 gmk guanylate kinase; 97.5 0.00011 2.5E-09 50.4 3.6 24 4-27 5-28 (186)
451 PRK04195 replication factor C 97.5 0.003 6.6E-08 50.0 11.9 23 5-27 41-63 (482)
452 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0047 1E-07 42.1 11.4 23 5-27 27-49 (177)
453 COG4619 ABC-type uncharacteriz 97.5 0.00053 1.1E-08 45.8 6.3 55 5-74 31-85 (223)
454 PRK08099 bifunctional DNA-bind 97.5 0.00013 2.9E-09 55.9 4.2 23 4-26 220-242 (399)
455 PRK14530 adenylate kinase; Pro 97.5 0.00012 2.5E-09 51.6 3.5 25 1-25 1-25 (215)
456 PRK06217 hypothetical protein; 97.5 0.00012 2.6E-09 50.2 3.4 24 4-27 2-25 (183)
457 PRK13900 type IV secretion sys 97.5 0.00099 2.1E-08 50.0 8.4 25 3-27 160-184 (332)
458 COG1136 SalX ABC-type antimicr 97.5 0.00014 3.1E-09 51.0 3.6 23 6-28 34-56 (226)
459 COG3840 ThiQ ABC-type thiamine 97.5 0.00016 3.6E-09 48.8 3.7 24 5-28 27-50 (231)
460 PRK14738 gmk guanylate kinase; 97.5 0.00013 2.7E-09 51.0 3.3 24 4-27 14-37 (206)
461 PF00005 ABC_tran: ABC transpo 97.5 0.00012 2.5E-09 47.6 3.0 23 5-27 13-35 (137)
462 PF13238 AAA_18: AAA domain; P 97.5 0.00013 2.8E-09 46.6 3.1 21 6-26 1-21 (129)
463 PRK03839 putative kinase; Prov 97.4 0.00014 3E-09 49.7 3.2 22 5-26 2-23 (180)
464 PF00004 AAA: ATPase family as 97.4 0.00015 3.3E-09 46.6 3.3 22 6-27 1-22 (132)
465 PF05621 TniB: Bacterial TniB 97.4 0.0022 4.7E-08 47.0 9.3 100 5-117 63-189 (302)
466 cd02042 ParA ParA and ParB of 97.4 0.0019 4E-08 39.8 7.6 82 6-98 2-84 (104)
467 PRK14531 adenylate kinase; Pro 97.4 0.00021 4.5E-09 49.0 3.6 23 4-26 3-25 (183)
468 cd00071 GMPK Guanosine monopho 97.4 0.00018 3.9E-09 46.9 3.1 21 6-26 2-22 (137)
469 PTZ00088 adenylate kinase 1; P 97.4 0.0002 4.3E-09 50.8 3.5 24 3-26 6-29 (229)
470 cd04178 Nucleostemin_like Nucl 97.4 0.00017 3.7E-09 48.9 3.0 45 76-123 1-45 (172)
471 COG0194 Gmk Guanylate kinase [ 97.4 0.00012 2.7E-09 49.4 2.2 23 5-27 6-28 (191)
472 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.012 2.6E-07 38.6 11.7 23 5-27 28-50 (144)
473 COG3839 MalK ABC-type sugar tr 97.4 0.0002 4.4E-09 53.3 3.6 23 6-28 32-54 (338)
474 COG0552 FtsY Signal recognitio 97.4 0.00085 1.8E-08 49.5 6.7 140 3-155 139-326 (340)
475 PRK10078 ribose 1,5-bisphospho 97.4 0.00017 3.7E-09 49.5 3.0 23 5-27 4-26 (186)
476 TIGR02322 phosphon_PhnN phosph 97.4 0.00019 4E-09 49.0 3.2 22 5-26 3-24 (179)
477 TIGR00150 HI0065_YjeE ATPase, 97.4 0.0012 2.6E-08 42.6 6.6 23 5-27 24-46 (133)
478 PF03205 MobB: Molybdopterin g 97.3 0.00024 5.2E-09 46.5 3.4 23 5-27 2-24 (140)
479 smart00382 AAA ATPases associa 97.3 0.00023 5E-09 45.9 3.4 26 4-29 3-28 (148)
480 PRK05480 uridine/cytidine kina 97.3 0.00025 5.3E-09 49.7 3.7 25 2-26 5-29 (209)
481 PRK13949 shikimate kinase; Pro 97.3 0.00023 4.9E-09 48.1 3.4 22 5-26 3-24 (169)
482 COG4088 Predicted nucleotide k 97.3 0.0012 2.7E-08 45.5 6.8 117 6-137 4-138 (261)
483 cd01131 PilT Pilus retraction 97.3 0.0018 3.8E-08 45.0 7.8 22 6-27 4-25 (198)
484 COG1117 PstB ABC-type phosphat 97.3 0.00018 4E-09 49.7 2.8 22 6-27 36-57 (253)
485 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00021 4.6E-09 44.2 2.8 20 5-24 17-36 (107)
486 PF07015 VirC1: VirC1 protein; 97.3 0.0066 1.4E-07 42.8 10.5 103 50-157 83-187 (231)
487 cd01130 VirB11-like_ATPase Typ 97.3 0.0026 5.6E-08 43.7 8.5 23 5-27 27-49 (186)
488 PF04665 Pox_A32: Poxvirus A32 97.3 0.00022 4.8E-09 50.6 3.2 24 3-26 13-36 (241)
489 cd02036 MinD Bacterial cell di 97.3 0.013 2.9E-07 39.6 11.9 84 52-142 64-147 (179)
490 COG4598 HisP ABC-type histidin 97.3 0.0012 2.6E-08 44.7 6.3 24 143-166 179-202 (256)
491 TIGR03263 guanyl_kin guanylate 97.3 0.00022 4.8E-09 48.6 3.0 23 5-27 3-25 (180)
492 PF02367 UPF0079: Uncharacteri 97.3 0.0012 2.7E-08 41.9 6.0 23 5-27 17-39 (123)
493 KOG1533|consensus 97.3 0.00042 9.1E-09 48.6 4.2 20 4-23 3-22 (290)
494 TIGR00235 udk uridine kinase. 97.3 0.00034 7.4E-09 48.9 3.8 24 3-26 6-29 (207)
495 PRK05057 aroK shikimate kinase 97.3 0.0003 6.6E-09 47.7 3.4 25 2-26 3-27 (172)
496 PRK14532 adenylate kinase; Pro 97.3 0.00027 5.8E-09 48.6 3.2 22 5-26 2-23 (188)
497 cd02023 UMPK Uridine monophosp 97.3 0.00026 5.7E-09 49.1 3.2 22 6-27 2-23 (198)
498 cd03238 ABC_UvrA The excision 97.3 0.00028 6.1E-09 48.0 3.1 21 5-25 23-43 (176)
499 PTZ00301 uridine kinase; Provi 97.3 0.00036 7.9E-09 48.8 3.7 24 1-24 1-24 (210)
500 PF07728 AAA_5: AAA domain (dy 97.3 0.00029 6.3E-09 45.9 3.1 21 6-26 2-22 (139)
No 1
>KOG0084|consensus
Probab=100.00 E-value=7.5e-41 Score=220.23 Aligned_cols=168 Identities=39% Similarity=0.698 Sum_probs=155.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
-|||+|+|+.|||||.|+.|+....+...+..|.+ +.......++++.+.+++|||+||++++.+...+|++++++|+|
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~v 88 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFV 88 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEE
Confidence 48999999999999999999999999999999998 55566778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCC-EEEeccCCCCCHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~l~~~i 159 (191)
||+++.+||..+..|+.++.++. ..+.|.++|+||+|+.+ ..++.++++.|+..++++ ++++||+++.|++++|..|
T Consensus 89 yDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l 167 (205)
T KOG0084|consen 89 YDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL 167 (205)
T ss_pred EEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence 99999999999999999999875 45689999999999987 778999999999999998 9999999999999999999
Q ss_pred HHHHHhhhhhhh
Q psy11135 160 VREIKKDKMLRG 171 (191)
Q Consensus 160 ~~~~~~~~~~~~ 171 (191)
...+..+.....
T Consensus 168 a~~lk~~~~~~~ 179 (205)
T KOG0084|consen 168 AKELKQRKGLHV 179 (205)
T ss_pred HHHHHHhcccCC
Confidence 999987655533
No 2
>KOG0092|consensus
Probab=100.00 E-value=5.5e-41 Score=220.07 Aligned_cols=169 Identities=31% Similarity=0.552 Sum_probs=156.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
.++||+|+|..++|||||+-|+..+.+.....+|++ .+......+++..+.+.||||+|+++|.++.+.|+++++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 579999999999999999999999999888788888 5556677788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++.+||..++.|...+.+... +++-+.+||||+|+.. +.+..++++.+++..|..++++||+++.|++++|..|
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 9999999999999999999988544 7788889999999998 8899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhh
Q psy11135 160 VREIKKDKMLRG 171 (191)
Q Consensus 160 ~~~~~~~~~~~~ 171 (191)
.+.+++......
T Consensus 163 a~~lp~~~~~~~ 174 (200)
T KOG0092|consen 163 AEKLPCSDPQER 174 (200)
T ss_pred HHhccCcccccc
Confidence 999998776654
No 3
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.1e-39 Score=222.01 Aligned_cols=187 Identities=53% Similarity=0.882 Sum_probs=161.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|.+|||||||++++..+.+...+.++.++.+......++..+.+.+|||||++++...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 68999999999999999999888877788888766666667788888899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
++.++++.+..|+..+..... ..+.|+++|+||+|+.. ..+..++...+++.++++++++||++|.|++++|+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~ 160 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR 160 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 999999999999988866433 35789999999999965 566777888889999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135 162 EIKKDKMLRGKEKKKRGISGNKLKQCCVLL 191 (191)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
.+.+.+.........+.....++++||+|+
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 161 ALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred HHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 988777776655666666677788888775
No 4
>KOG0094|consensus
Probab=100.00 E-value=2.3e-39 Score=212.62 Aligned_cols=168 Identities=30% Similarity=0.543 Sum_probs=157.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
++.+|++++|..+|||||||++++.+.+..+|..|.+ ++...++.+.+..+.+++|||+||++++.+.+.|++++.+++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3568999999999999999999999999999999999 666777888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||+++..+|+...+|+..+.......+.-+++|+||.||.+ ++++.++....++++++.|+++||+.|+||+.+|..
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence 9999999999999999999999877777788999999999988 788999999999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q psy11135 159 LVREIKKDKM 168 (191)
Q Consensus 159 i~~~~~~~~~ 168 (191)
|...+++...
T Consensus 180 Iaa~l~~~~~ 189 (221)
T KOG0094|consen 180 IAAALPGMEV 189 (221)
T ss_pred HHHhccCccc
Confidence 9888877655
No 5
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=213.26 Aligned_cols=166 Identities=73% Similarity=1.121 Sum_probs=149.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|.+|||||||++++....+...+.++.+..+.....+++..+.+.+|||||++++..++..+++.++++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 56899999999999999999999998887788888877777777788988999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|.+|
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 999999999999999999887765556889999999999865 4567778888888889999999999999999999999
Q ss_pred HHHHHhh
Q psy11135 160 VREIKKD 166 (191)
Q Consensus 160 ~~~~~~~ 166 (191)
.+.+.+.
T Consensus 163 ~~~l~~~ 169 (189)
T PTZ00369 163 VREIRKY 169 (189)
T ss_pred HHHHHHH
Confidence 9888664
No 6
>KOG0078|consensus
Probab=100.00 E-value=1.8e-37 Score=207.14 Aligned_cols=167 Identities=35% Similarity=0.617 Sum_probs=154.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|||||+++.++....+...+..|.+ +........++..+.+++|||+||+++..+...|++.++++++|
T Consensus 12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~Lv 91 (207)
T KOG0078|consen 12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLV 91 (207)
T ss_pred EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEE
Confidence 58999999999999999999999999999998888 55566778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++..+|+++..|+..+..+ ..+.+|.++|+||+|+.. +.++.+.++.+|.++|++|+|+||++|.||++.|..|.
T Consensus 92 yDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La 170 (207)
T KOG0078|consen 92 YDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLA 170 (207)
T ss_pred EEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence 9999999999999999999885 445899999999999987 78999999999999999999999999999999999999
Q ss_pred HHHHhhhhhh
Q psy11135 161 REIKKDKMLR 170 (191)
Q Consensus 161 ~~~~~~~~~~ 170 (191)
+.+.+.....
T Consensus 171 ~~i~~k~~~~ 180 (207)
T KOG0078|consen 171 RDILQKLEDA 180 (207)
T ss_pred HHHHhhcchh
Confidence 9998655543
No 7
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=3.3e-37 Score=212.50 Aligned_cols=163 Identities=36% Similarity=0.573 Sum_probs=144.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+.+||+++|..|||||||+.++..+.+...+.+|.+..+.....+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 78899999999999999999999999988888888877666666788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcC-CCEEEec
Q psy11135 81 VFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFN-IPFIKTS 145 (191)
Q Consensus 81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~-~~~~~~s 145 (191)
|||++++++++.+. .|...+... .++.|+++|+||.|+.+. .+..++++.+++.++ ++++++|
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 99999999999997 577766653 357999999999999642 356778899999998 5899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy11135 146 AKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~ 165 (191)
|++|.|++++|.++.+.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.6e-37 Score=212.20 Aligned_cols=185 Identities=29% Similarity=0.506 Sum_probs=153.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+||+++|++|||||||++++.+..+...+.++.+..+ ...+.++ +..+.+.+|||||++++..++..++++++++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999888777777776433 3445566 7788899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~ 156 (191)
||++++++++.+..|+..+..... ....|+++|+||+|+.. ..+..+++.++++..+ .+++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 999999999999999888765322 35789999999999974 5678889999999999 689999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhh---------ccccCCCccccce
Q psy11135 157 YTLVREIKKDKMLRGKEKK---------KRGISGNKLKQCC 188 (191)
Q Consensus 157 ~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 188 (191)
++|.+.+.+......+... +..+....+++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 9999999776544333332 2334445567798
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.5e-36 Score=207.95 Aligned_cols=161 Identities=27% Similarity=0.465 Sum_probs=143.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|..|||||||+.++....+...+.++.+..+ .....+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illV 85 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILV 85 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999998887777666655333 44466788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.... ++.|+++|+||.|+.. ..++.++++.+++..+++++++||++|.|++++|++|.
T Consensus 86 fD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 86 YDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA 163 (189)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999997643 5799999999999975 56789999999999999999999999999999999999
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+..
T Consensus 164 ~~i~~ 168 (189)
T cd04121 164 RIVLM 168 (189)
T ss_pred HHHHH
Confidence 87764
No 10
>KOG0080|consensus
Probab=100.00 E-value=1.2e-37 Score=198.37 Aligned_cols=169 Identities=33% Similarity=0.505 Sum_probs=156.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|..|+|||||+-++....+....+.|.+ ++......+++..+++.+|||+|+++++.+++.|++.+.++|+|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV 90 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV 90 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence 58999999999999999999999998888777777 55566678999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++..++|..+..|++++..|.-.+++..++|+||+|... +.++.++...|++++++-|+++||++.+++...|++++
T Consensus 91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelv 170 (209)
T KOG0080|consen 91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELV 170 (209)
T ss_pred EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHH
Confidence 99999999999999999999998888899999999999884 77899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q psy11135 161 REIKKDKMLRG 171 (191)
Q Consensus 161 ~~~~~~~~~~~ 171 (191)
..+.+....-.
T Consensus 171 eKIi~tp~l~~ 181 (209)
T KOG0080|consen 171 EKIIETPSLWE 181 (209)
T ss_pred HHHhcCcchhh
Confidence 99988776655
No 11
>KOG0079|consensus
Probab=100.00 E-value=1.1e-37 Score=195.84 Aligned_cols=183 Identities=32% Similarity=0.558 Sum_probs=160.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++.+++|++|+|||+|+.++....+..+|..|++ +....+..+++..+.++|||++|+++++.++..+++..+++++||
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 5678999999999999999999999999998888 555667788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++.+||.+...|+..+... .+..|-++|+||.|+.. +-+..++++.++.+.|+.+|++|++++.|++..|.-|.+
T Consensus 89 DVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~ 166 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITK 166 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHH
Confidence 999999999999999999874 35789999999999988 557889999999999999999999999999999999998
Q ss_pred HHHhhhh-----hhhhhhhccccCCCccccce
Q psy11135 162 EIKKDKM-----LRGKEKKKRGISGNKLKQCC 188 (191)
Q Consensus 162 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 188 (191)
+++.... .++..--.-+.++.+.|+||
T Consensus 167 qvl~~k~r~~~~~~r~~~~~l~~n~~~~~k~c 198 (198)
T KOG0079|consen 167 QVLQAKLRESVEQQRADAVSLKDNSKSTKKCC 198 (198)
T ss_pred HHHHHHHhhcHHHHhhcceEeccCCCccccCC
Confidence 8876552 22223333456677788888
No 12
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.9e-36 Score=204.61 Aligned_cols=164 Identities=54% Similarity=0.898 Sum_probs=147.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++..+.+...+.++.+..+.....+++..+.+.+|||||+.++..++..++..+|++++|
T Consensus 1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 46899999999999999999999999888888888776766677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. ..++.+++..+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999998887776654456799999999999865 56788899999999999999999999999999999999
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 161 ~~~~~ 165 (172)
T cd04141 161 REIRR 165 (172)
T ss_pred HHHHH
Confidence 87765
No 13
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.2e-36 Score=211.41 Aligned_cols=163 Identities=23% Similarity=0.363 Sum_probs=146.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
..+||+++|+.|||||+|++++....+...+.||....+...+.+++..+.+.+|||+|++.+..++..++++++++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 36899999999999999999999999988888888877666677899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEecc
Q psy11135 82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~ 146 (191)
||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.. ..++.++++++++++++ +|+++||
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 999999999984 78988887643 4689999999999863 45888999999999998 6999999
Q ss_pred CCCC-CHHHHHHHHHHHHHhh
Q psy11135 147 KTRM-GVDDAFYTLVREIKKD 166 (191)
Q Consensus 147 ~~~~-~v~~l~~~i~~~~~~~ 166 (191)
++|. |++++|..++..+.+.
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9997 8999999999887664
No 14
>KOG0394|consensus
Probab=100.00 E-value=5.4e-37 Score=199.59 Aligned_cols=167 Identities=33% Similarity=0.548 Sum_probs=152.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
-+||+++|++|+|||||++++....+...+..|.+ +.....+.++++.+.+++|||+|++++.++...+++++|+.+++
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlv 88 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 88 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEE
Confidence 38999999999999999999999999888888887 67788889999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCC---CCCcEEEEEecCCCCC---CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDA---EEVPMVLVGNKCDLST---WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDD 154 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~ 154 (191)
||++++.+|+.+..|..++..+... ...|+||++||+|+.. +.++...++++++..| +|||++||+...||++
T Consensus 89 ydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~ 168 (210)
T KOG0394|consen 89 YDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDE 168 (210)
T ss_pred eecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHH
Confidence 9999999999999999999876542 4579999999999966 7899999999999877 8999999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q psy11135 155 AFYTLVREIKKDKML 169 (191)
Q Consensus 155 l~~~i~~~~~~~~~~ 169 (191)
+|..+.+........
T Consensus 169 AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 169 AFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHhccch
Confidence 999999888776543
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.7e-36 Score=205.79 Aligned_cols=160 Identities=27% Similarity=0.439 Sum_probs=144.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
..+||+++|..|||||||++++..+.+...+.||....+.....+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilv 83 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 83 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEE
Confidence 36899999999999999999999999988888888877666778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEecc
Q psy11135 82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~ 146 (191)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+.. ..++.++++++++++++ +|+++||
T Consensus 84 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 84 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 999999999997 78988887653 5789999999999853 34889999999999996 8999999
Q ss_pred CCCCC-HHHHHHHHHHHH
Q psy11135 147 KTRMG-VDDAFYTLVREI 163 (191)
Q Consensus 147 ~~~~~-v~~l~~~i~~~~ 163 (191)
++|.| ++++|..+++..
T Consensus 162 k~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 162 LQSENSVRDIFHVATLAC 179 (182)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 99998 999999988854
No 16
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4.5e-36 Score=209.67 Aligned_cols=162 Identities=24% Similarity=0.387 Sum_probs=142.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+|+|..|||||||+.++....+...+.||....+...+.+++..+.+.+|||+|++.+..++..++..+|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999998889999887777777889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
++++++++.+. .|...+... .++.|+++|+||+|+... .++.+++..++++.++ +|+||||++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99999999995 565555443 357999999999998641 3678899999999996 899999999
Q ss_pred CCC-HHHHHHHHHHHHHhhh
Q psy11135 149 RMG-VDDAFYTLVREIKKDK 167 (191)
Q Consensus 149 ~~~-v~~l~~~i~~~~~~~~ 167 (191)
+.+ ++++|..+........
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 885 9999999888766533
No 17
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1e-35 Score=206.36 Aligned_cols=184 Identities=31% Similarity=0.519 Sum_probs=153.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 589999999999999999999998887777677663 3334555677778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+... ....|+++|+||+|+.+ ..+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~ 163 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT 163 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence 9999999999999999888664 35689999999999976 44577888889999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhcc--------ccCCCccccce
Q psy11135 161 REIKKDKMLRGKEKKKR--------GISGNKLKQCC 188 (191)
Q Consensus 161 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 188 (191)
+.+...+..+..+..+. ..+.+++++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 164 ELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 99987665544433332 33446678888
No 18
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.4e-36 Score=204.18 Aligned_cols=159 Identities=34% Similarity=0.567 Sum_probs=143.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|+|||+|+.++..+.+...+.+|.+..+.....+++..+.+.+|||+|++++..++..++++++++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999998888888887666667788899999999999999999999999999999999999
Q ss_pred CCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-----------ccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135 84 VNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-----------AVDMNQAQELAEQFNI-PFIKTSAKTRM 150 (191)
Q Consensus 84 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 150 (191)
++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+. .+..++++.+++..++ +|+++||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 68998887643 47999999999999653 3788999999999998 59999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVREIK 164 (191)
Q Consensus 151 ~v~~l~~~i~~~~~ 164 (191)
|++++|+.+++.+.
T Consensus 160 nV~~~F~~~~~~~~ 173 (176)
T cd04133 160 NVKAVFDAAIKVVL 173 (176)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998763
No 19
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=8.9e-36 Score=205.09 Aligned_cols=179 Identities=32% Similarity=0.480 Sum_probs=149.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|+|||||++++.++.+...+.++....+....... +..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999999988888777766655555555 67788999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-----ccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHH
Q psy11135 83 AVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-----AVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDA 155 (191)
Q Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l 155 (191)
|++++++++.+. .|+..+... .++.|+++|+||.|+... .+..+++.+++..+++ +++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 999999999986 477666543 357899999999998652 3567888999999998 8999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135 156 FYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVLL 191 (191)
Q Consensus 156 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
|..+.+.+....... .....+.|++|++|
T Consensus 159 f~~l~~~~~~~~~~~-------~~~~~~~~~~c~~~ 187 (187)
T cd04132 159 FDTAIEEALKKEGKA-------IFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHhhhhhh-------hhccCCCCcccccC
Confidence 999999987654443 44555667777764
No 20
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.7e-35 Score=203.83 Aligned_cols=186 Identities=35% Similarity=0.532 Sum_probs=156.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|+++++|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999888766666665433 445667788888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++++++..+..|+..+..+. ....|+++|+||.|+.+ ..+..+++..+++..+++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999998887653 34589999999999875 556778888899888999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135 162 EIKKDKMLRGKEKKKRGISGNKLKQCCVLL 191 (191)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
.+.+.... .+.+..+.......++||++.
T Consensus 160 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T cd04125 160 LIIKRLEE-QELSPKNIKQQFKKKNNCFIN 188 (188)
T ss_pred HHHHHhhc-CcCCccccccccccccCcccC
Confidence 99865433 344445566666688888874
No 21
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.3e-35 Score=204.77 Aligned_cols=184 Identities=32% Similarity=0.612 Sum_probs=153.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+||+++|++|||||||++++....+. ..+.++....+ .....+++..+.+.+|||||+.++...+..++..+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988864 35556655333 34567788888999999999999999899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. +.+..++...+++.++++++++||++|.|++++|.+|.
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 34789999999999964 55677888899999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhccc----cCCCccccce
Q psy11135 161 REIKKDKMLRGKEKKKRG----ISGNKLKQCC 188 (191)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 188 (191)
+.+.+....+....+.+- ...++.++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 160 KELKHRKYEQPDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHhccccCCCCcEEeccccCcccccCCCC
Confidence 999887655443333232 5566678888
No 22
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.9e-35 Score=204.33 Aligned_cols=162 Identities=30% Similarity=0.568 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+.|+++|..|||||||++++..+.+...+.+|.+. .....+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999988888887763 34455678888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|++++++++.+..|+..+... ...+.|+++|+||+|+.. +.+..+++.+++++. ++.|+++||++|.|++++|.++.
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999877654 345799999999999965 677888888999885 78999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 160 ~~~~~~ 165 (202)
T cd04120 160 DDILKK 165 (202)
T ss_pred HHHHHh
Confidence 888653
No 23
>KOG0098|consensus
Probab=100.00 E-value=4.6e-36 Score=195.66 Aligned_cols=162 Identities=33% Similarity=0.560 Sum_probs=150.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+|++++|+.|||||+|+.+++...+.+.++.|.+ +.-...+.++++.+++++|||+|++.+++.+..||+.+.++++|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLV 85 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLV 85 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEE
Confidence 58999999999999999999999999999998888 44455678999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++.++|..+..|+..+..+. .+++.+++++||+|+.. +.++.++.++||+++|..++++||+++.|++++|..+.
T Consensus 86 ydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 86 YDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA 164 (216)
T ss_pred EEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence 99999999999999999998753 56899999999999987 78999999999999999999999999999999999888
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
..+..
T Consensus 165 ~~Iy~ 169 (216)
T KOG0098|consen 165 KEIYR 169 (216)
T ss_pred HHHHH
Confidence 88765
No 24
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-35 Score=202.29 Aligned_cols=160 Identities=26% Similarity=0.406 Sum_probs=142.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
.+||+++|+.|||||||++++..+.+...+.|+....+.....+++..+.+.+|||+|++.+..++..++++++++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999998888888887666666778899999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccC
Q psy11135 83 AVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAK 147 (191)
Q Consensus 83 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 147 (191)
|++++++++.+ ..|+..+.... +..|+++|+||+|+.+ ..++.++++++++++++ +|+++||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 78988887653 5789999999999853 34888999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q psy11135 148 TRMG-VDDAFYTLVREIK 164 (191)
Q Consensus 148 ~~~~-v~~l~~~i~~~~~ 164 (191)
+|++ ++++|..+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988543
No 25
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.9e-35 Score=199.45 Aligned_cols=162 Identities=58% Similarity=1.007 Sum_probs=144.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++||+++|.+|||||||++++..+.+...+.+++...+......++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 58999999999999999999998888777778887766667778888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++.++++.+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999999987765567899999999999976 445667778888889999999999999999999999987
Q ss_pred HHH
Q psy11135 162 EIK 164 (191)
Q Consensus 162 ~~~ 164 (191)
.+.
T Consensus 161 ~l~ 163 (164)
T cd04175 161 QIN 163 (164)
T ss_pred Hhh
Confidence 653
No 26
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.8e-35 Score=199.25 Aligned_cols=161 Identities=58% Similarity=0.996 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++||+++|++|||||||++++....+...+.++....+.....+++..+.+.+|||||++++...+..+++.++++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999888878888877666666778888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887765556899999999999865 456677788888888899999999999999999999987
Q ss_pred HH
Q psy11135 162 EI 163 (191)
Q Consensus 162 ~~ 163 (191)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 27
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.5e-35 Score=197.59 Aligned_cols=161 Identities=83% Similarity=1.238 Sum_probs=145.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++||+++|++|||||||++++.++.+...+.++....+.....+++..+.+.+||++|++++..++..+++++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 47999999999999999999999988778888877766666778888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
|+++.+++..+..|+..+.......+.|+++|+||+|+.......+++..+++..+++++++||++|.|++++|+++.+.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 99999999999999988887655568899999999999877777888888989899999999999999999999999865
Q ss_pred H
Q psy11135 163 I 163 (191)
Q Consensus 163 ~ 163 (191)
+
T Consensus 161 ~ 161 (162)
T cd04138 161 I 161 (162)
T ss_pred h
Confidence 4
No 28
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.6e-35 Score=204.58 Aligned_cols=163 Identities=30% Similarity=0.453 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcC-eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+||+++|++|||||||++++.+..+...+.++.+ +.+.....+++ ..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999988888888876 44444555554 568899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
||++++++++.+..|+..+..... ..+.|+++|+||+|+.. +.+..++...+++.++++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998877543 24568999999999974 667888899999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy11135 159 LVREIKKD 166 (191)
Q Consensus 159 i~~~~~~~ 166 (191)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99998764
No 29
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=9.4e-35 Score=202.94 Aligned_cols=180 Identities=24% Similarity=0.377 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||++++..+.+.. ..++.+..+.. .....+.+.+|||+|++.+..++..+++.++++++|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~---~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL---KQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE---EEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999988764 34555433222 12245678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------------------CccCHHHHHHHHHHcC-----
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------------------WAVDMNQAQELAEQFN----- 138 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------~~~~~~~~~~~~~~~~----- 138 (191)
++++++++.+..|+..+... ...+.|+++|+||+|+.. +.+..+++..++++.+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 99999999999988887653 345789999999999864 5678889999999876
Q ss_pred ---------CCEEEeccCCCCCHHHHHHHHHHHHHhhhhhhhh-hhh-----ccccCCCccccce
Q psy11135 139 ---------IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK-EKK-----KRGISGNKLKQCC 188 (191)
Q Consensus 139 ---------~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~ 188 (191)
++|+++||++|.||+++|..+++.+.+-...+.. ... +.+....++.+||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCcccCCCCCC
Confidence 6899999999999999999999888754433322 222 2333444566777
No 30
>KOG0087|consensus
Probab=100.00 E-value=2.5e-35 Score=196.13 Aligned_cols=168 Identities=33% Similarity=0.504 Sum_probs=154.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.|||+++|++|+|||-|+.++...++.....+|.+ +.......++++.+..+||||+||++|+.....+++.+.+.++|
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllV 93 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 93 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEE
Confidence 48999999999999999999999999888888888 45556678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++...+|+++..|+.+++.+ ..+++++++|+||+||.. +.+..++++.++...+..++++||.++.|++.+|+.++
T Consensus 94 YDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 94 YDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred EechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 9999999999999999999985 456899999999999988 77899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q psy11135 161 REIKKDKMLRG 171 (191)
Q Consensus 161 ~~~~~~~~~~~ 171 (191)
..+......+.
T Consensus 173 ~~I~~~vs~k~ 183 (222)
T KOG0087|consen 173 TEIYKIVSKKQ 183 (222)
T ss_pred HHHHHHHHHHh
Confidence 99887655543
No 31
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.3e-34 Score=195.33 Aligned_cols=162 Identities=70% Similarity=1.130 Sum_probs=144.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|++|||||||++++.+..+...+.++..+.+.....+++..+.+.+|||||++++...+..+++.+++++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999998887777787777666677788888889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
++++++++.+..|...+.......+.|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|++++|++|.+.
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVRE 160 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHH
Confidence 999999999999998887765556789999999999976 4567778888899999999999999999999999999987
Q ss_pred HHh
Q psy11135 163 IKK 165 (191)
Q Consensus 163 ~~~ 165 (191)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00173 161 IRK 163 (164)
T ss_pred Hhh
Confidence 653
No 32
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.6e-34 Score=194.20 Aligned_cols=162 Identities=29% Similarity=0.540 Sum_probs=142.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++++...+..++++++++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988777777766444 33456788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+... ..++.|+++|+||+|+.. ..++.+++..+++..+++++++||++|.|++++|..+.
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999887664 345789999999999976 45678889999999999999999999999999999998
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87754
No 33
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1e-34 Score=199.95 Aligned_cols=159 Identities=31% Similarity=0.533 Sum_probs=137.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|++|||||||++++..+.+...+.++....+......++..+.+.+|||+|++++..++..++..++++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 79999999999999999999999888888887766665666788888899999999999998989999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcC-CCEEEeccCCC
Q psy11135 85 NSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFN-IPFIKTSAKTR 149 (191)
Q Consensus 85 ~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~-~~~~~~s~~~~ 149 (191)
+++++++.+. .|+..+... .++.|+++|+||+|+... .+..+++..+++..+ ++|+++||++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999886 588777654 347899999999998652 245667778888877 68999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy11135 150 MGVDDAFYTLVREIKK 165 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~ 165 (191)
.|++++|.+|.+.+..
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988863
No 34
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.8e-34 Score=199.86 Aligned_cols=164 Identities=33% Similarity=0.587 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
.+||+++|++|||||||++++.+..+...+.++.+. .....+.+ ++..+.+++|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999998877766666653 33333444 4667889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||++++++++.+..|+..+.........|+++|+||+|+.. ..+..++...+++.++++++++|+++|.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999887665555678999999999976 5678888999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy11135 160 VREIKKD 166 (191)
Q Consensus 160 ~~~~~~~ 166 (191)
.+.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9988765
No 35
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3e-34 Score=193.52 Aligned_cols=162 Identities=65% Similarity=0.992 Sum_probs=143.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||+.++..++..+++.+|+++++
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 46899999999999999999999988877777877766666667888888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++..+++++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887755556889999999999976 44566778888888899999999999999999999998
Q ss_pred HHH
Q psy11135 161 REI 163 (191)
Q Consensus 161 ~~~ 163 (191)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 36
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=4.5e-34 Score=200.28 Aligned_cols=163 Identities=31% Similarity=0.531 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|++++...+..+++.++++++|
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence 48999999999999999999999887766666666 33455667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..++...+++++++||++|.|++++|+.|.
T Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 92 YDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred EECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887643 35789999999999865 55677888999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 171 ~~i~~~ 176 (216)
T PLN03110 171 LEIYHI 176 (216)
T ss_pred HHHHHH
Confidence 988663
No 37
>KOG0093|consensus
Probab=100.00 E-value=4.5e-35 Score=183.91 Aligned_cols=166 Identities=29% Similarity=0.541 Sum_probs=149.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+|++++|+..+|||||+.++.+..+...+.+|.+..+.. ++.-..+.+.+++|||+|+++++.++..++++++++|++
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm 100 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM 100 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence 3699999999999999999999999988888888855544 344466789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++|.+|+..+..|...+..+ ...+.|+|+|+||||+.. +-++.+....++.++|..||++|++.+.|++.+|+.++
T Consensus 101 yDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv 179 (193)
T KOG0093|consen 101 YDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV 179 (193)
T ss_pred EecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence 9999999999999999999887 456899999999999987 55788999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
..+.+....
T Consensus 180 ~~Ic~kmse 188 (193)
T KOG0093|consen 180 DIICDKMSE 188 (193)
T ss_pred HHHHHHhhh
Confidence 988775544
No 38
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.8e-34 Score=194.49 Aligned_cols=161 Identities=48% Similarity=0.891 Sum_probs=142.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++||+++|.+|+|||||++++..+.+...+.++..........+++..+.+++|||||++++..++..++.++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 58999999999999999999999988777777776666667778888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999998887755556899999999999865 455666778888888899999999999999999999987
Q ss_pred HH
Q psy11135 162 EI 163 (191)
Q Consensus 162 ~~ 163 (191)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 39
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.2e-34 Score=195.81 Aligned_cols=158 Identities=34% Similarity=0.564 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||++++..+.+...+.|+.+..+.....+++..+.+.+|||+|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 79999999999999999999999988888888877666566788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSAKT 148 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~~~ 148 (191)
++++++++.+. .|+..+... .++.|+++|+||+|+.. ..+..++++.+++..+ +.|+++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 99999999997 587777653 24789999999999854 3467778888998887 6899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVREI 163 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~ 163 (191)
|.|++++|+.++...
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999988753
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=7.4e-34 Score=194.42 Aligned_cols=163 Identities=33% Similarity=0.557 Sum_probs=140.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc----------CeEEEEEEEeCCChhhHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID----------GETALLDILDTAGQEEYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~~ 71 (191)
.+||+++|++|||||||++++....+...+.++.+..+ .....+. +..+.+.+||+||++++...+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 58999999999999999999999888777777665333 2223332 456789999999999999999999
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
++++|++++|||+++++++..+..|+..+......++.|+++|+||+|+.+ ..+..+++.++++.++++++++||++|.
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~ 163 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGT 163 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999999999999999999887765556789999999999976 5677888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy11135 151 GVDDAFYTLVREIKK 165 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~ 165 (191)
|++++|+.|.+.+.+
T Consensus 164 ~v~~l~~~l~~~~~~ 178 (180)
T cd04127 164 NVEKAVERLLDLVMK 178 (180)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=8.2e-34 Score=191.97 Aligned_cols=161 Identities=32% Similarity=0.538 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+|||||++.+...+..+++.++++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999998777777766433 445667788889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCC----CCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDA----EEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
|+++++++..+..|+..+..+... .+.|+++|+||+|+.. ..+..++...++...+++++++|++++.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999998776542 5789999999999974 56678888888888899999999999999999999
Q ss_pred HHHHHHH
Q psy11135 158 TLVREIK 164 (191)
Q Consensus 158 ~i~~~~~ 164 (191)
+|.+.+.
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5.9e-34 Score=199.90 Aligned_cols=164 Identities=28% Similarity=0.527 Sum_probs=142.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+..+||+++|.+|||||||++++..+.+...+.++.+.. ....+..++..+.+.+|||+|++++..++..+++.+++++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 457999999999999999999999888887777777633 3344556777789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+....+..++. .+++..+++|+++||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999887653 578999999999997656665555 7778888999999999999999999999
Q ss_pred HHHHHhhh
Q psy11135 160 VREIKKDK 167 (191)
Q Consensus 160 ~~~~~~~~ 167 (191)
.+.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99887553
No 43
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8.5e-34 Score=191.52 Aligned_cols=159 Identities=39% Similarity=0.689 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
.+||+++|.+|||||||++++.+..+...+.++....+......+...+.+.+|||||++++...+..++..++++++||
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 47999999999999999999999988777777777666666667778888999999999999998899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|++++++++.+..|+..+..... .++.|+++|+||+|+.. ..+..+++..++..++++++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887765432 25789999999999976 5677778888888889999999999999999999998
Q ss_pred HH
Q psy11135 160 VR 161 (191)
Q Consensus 160 ~~ 161 (191)
++
T Consensus 161 ~~ 162 (165)
T cd04140 161 LN 162 (165)
T ss_pred Hh
Confidence 75
No 44
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=9.3e-34 Score=190.77 Aligned_cols=159 Identities=42% Similarity=0.754 Sum_probs=146.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc-cceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
||+++|++|||||||++++.+..+...+.++. .+........++..+.+.+||++|++++..+...++..+|+++++||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999888888887 46667777889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
++++++++.+..|+..+..... .+.|+++|+||.|+.. ..++.++++.++++++++|+++|++++.|+.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999987654 5689999999999986 7889999999999999999999999999999999999988
Q ss_pred HH
Q psy11135 163 IK 164 (191)
Q Consensus 163 ~~ 164 (191)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.3e-33 Score=189.79 Aligned_cols=162 Identities=36% Similarity=0.684 Sum_probs=142.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 58999999999999999999999998888777776443 34556788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+... ...+.|+++|+||+|+.. ..+..+++..++..++++++++|+++|.|++++|+++.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999988764 345789999999999975 45677888889999999999999999999999999999
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+..
T Consensus 162 ~~~~~ 166 (167)
T cd01867 162 KDIKK 166 (167)
T ss_pred HHHHh
Confidence 88754
No 46
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.1e-33 Score=190.27 Aligned_cols=161 Identities=28% Similarity=0.421 Sum_probs=139.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
||+++|.+|||||||++++..+.+...+.++.+..+ .....+++..+.+++|||||++++...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999998888888876444 3456678888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC---ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW---AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
+++++++..+..|+..+.........|+++|+||+|+.+. ....+++..++++++.+++++||++|.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999988866544445789999999998652 2345667788888899999999999999999999999
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88765
No 47
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=7.3e-34 Score=193.10 Aligned_cols=157 Identities=34% Similarity=0.568 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||+.++..+.+...+.++....+.....+++..+.+.+|||+|++.+...+..+++++|++++|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999999888888888776666667788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
+++++++..+. .|+..+... .++.|+++|+||+|+.+. .+..+++..+++.++. +++++||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999996 577766553 347999999999998542 3678889999999984 999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVRE 162 (191)
Q Consensus 149 ~~~v~~l~~~i~~~ 162 (191)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998764
No 48
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.7e-33 Score=189.24 Aligned_cols=158 Identities=31% Similarity=0.538 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|+|||||++++..+.+...+.++.+.. ......+++..+.+.+||++|++++...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 589999999999999999999998877777776643 3455667787888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|++++++++.+..|+..+.... ..+.|+++|+||.|+.. ..+..+++..+++.++++|+++||++|.|++++|.+|.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 9999999999999998887643 34689999999999975 557888999999999999999999999999999999976
Q ss_pred H
Q psy11135 162 E 162 (191)
Q Consensus 162 ~ 162 (191)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 49
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3e-33 Score=189.02 Aligned_cols=161 Identities=39% Similarity=0.707 Sum_probs=140.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.+.. .......++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 5899999999999999999999888766666666533 344556677888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... .++.|+++|+||+|+.. ..+..+++..+++.++++++++|+++|.|++++|.+|.
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999887653 35789999999999865 55777888999999999999999999999999999999
Q ss_pred HHHH
Q psy11135 161 REIK 164 (191)
Q Consensus 161 ~~~~ 164 (191)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.7e-33 Score=188.42 Aligned_cols=161 Identities=30% Similarity=0.576 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++++...+..++++++++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999988777777766433 334455677788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|++++++++.+..|+..+.... ....|+++|+||+|+.+ +.+..++..++++.++++++++||+++.|++++|+++.+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999998886543 34689999999999976 446678888899999999999999999999999999988
Q ss_pred HHHh
Q psy11135 162 EIKK 165 (191)
Q Consensus 162 ~~~~ 165 (191)
.+.+
T Consensus 161 ~~~~ 164 (165)
T cd01865 161 IICD 164 (165)
T ss_pred HHHh
Confidence 7643
No 51
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=4.6e-33 Score=192.50 Aligned_cols=163 Identities=28% Similarity=0.487 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+||+++|.+|+|||||++++..+.+.. .+.++.+..+ .....+++..+.+.+||++|++++..++..++..+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888753 5666666444 34567788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-----CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-----WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||++++++++.+..|+..+... .++.|+++|+||+|+.. ..+..+++..++...+++++++|++++.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888663 34689999999999854 2445667788888889999999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy11135 157 YTLVREIKKDKM 168 (191)
Q Consensus 157 ~~i~~~~~~~~~ 168 (191)
++|.+.+.+...
T Consensus 159 ~~i~~~~~~~~~ 170 (193)
T cd04118 159 QKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHHhcc
Confidence 999999876543
No 52
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=4.6e-33 Score=188.82 Aligned_cols=161 Identities=34% Similarity=0.554 Sum_probs=139.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..+||+++|++|||||||++++....+...+.++.+.. ......+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 46899999999999999999999888776666665533 34456678888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~ 156 (191)
+||++++++++.+..|...+..... ..+.|+++|+||+|+....+..+++++++++.+ .+++++||+++.|+.++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF 163 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence 9999999999999999988766432 246899999999999877788889999999888 489999999999999999
Q ss_pred HHHHHH
Q psy11135 157 YTLVRE 162 (191)
Q Consensus 157 ~~i~~~ 162 (191)
+.+++.
T Consensus 164 ~~~~~~ 169 (170)
T cd04116 164 EEAVRR 169 (170)
T ss_pred HHHHhh
Confidence 998864
No 53
>KOG0091|consensus
Probab=100.00 E-value=5.5e-34 Score=182.12 Aligned_cols=165 Identities=31% Similarity=0.547 Sum_probs=146.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEE-EEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQV-VIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
.++.+|+|+.-+|||+|++.+..+.++.-.+||.+..+ ...+ .-++..+++++|||+|+++++++++.++++.-++++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll 87 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL 87 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence 58999999999999999999999999888888887433 2222 246888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCC-CCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAE-EVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+||.+|.+||+.+..|..+...+...+ +.-+.+|++|+|+.. ++++.++++.+++.+|..|+++|+++|.|+++.|..
T Consensus 88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m 167 (213)
T KOG0091|consen 88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM 167 (213)
T ss_pred EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence 999999999999999999987777744 455789999999987 889999999999999999999999999999999999
Q ss_pred HHHHHHhhh
Q psy11135 159 LVREIKKDK 167 (191)
Q Consensus 159 i~~~~~~~~ 167 (191)
|.+.+...-
T Consensus 168 laqeIf~~i 176 (213)
T KOG0091|consen 168 LAQEIFQAI 176 (213)
T ss_pred HHHHHHHHH
Confidence 998886543
No 54
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.7e-33 Score=190.77 Aligned_cols=160 Identities=23% Similarity=0.409 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|..|||||||++++..+.+...+.+|.+..+ .....+++..+.+.+||++|++++...+..++++++++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999998888888887443 456778888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC------CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST------WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
|+++++++..+..|+..+.... ....| ++|+||+|+.. .....++..++++..+++++++||++|.|++++|
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999887643 23466 68899999852 1123456778888999999999999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
+++.+.+.+
T Consensus 159 ~~l~~~l~~ 167 (182)
T cd04128 159 KIVLAKAFD 167 (182)
T ss_pred HHHHHHHHh
Confidence 999988864
No 55
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=5e-33 Score=188.28 Aligned_cols=162 Identities=56% Similarity=0.949 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++||+++|.+|||||||++++.++.+...+.++....+.....+++..+.+.+|||||++++..++..+++.+++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 58999999999999999999999888777778877666666778888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|++++++++.+..|...+.......+.|+++++||.|+.. .....++...+++.++ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887655556899999999999875 4567777888888888 7999999999999999999998
Q ss_pred HHHH
Q psy11135 161 REIK 164 (191)
Q Consensus 161 ~~~~ 164 (191)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7654
No 56
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=192.48 Aligned_cols=164 Identities=30% Similarity=0.511 Sum_probs=136.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++||+++|++|||||||++++.+..+. .+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 689999999999999999999987763 44455543 3334456677788899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHH-HHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSY-REQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
||+++++++..+..+ ...+..+....+.|+++|+||+|+.. ..+..++...++...+++|+++||+++.|++++|++|
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 172 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEEL 172 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999764 44444333345689999999999975 4567778888888899999999999999999999999
Q ss_pred HHHHHhhh
Q psy11135 160 VREIKKDK 167 (191)
Q Consensus 160 ~~~~~~~~ 167 (191)
...+.+..
T Consensus 173 ~~~~~~~~ 180 (211)
T PLN03118 173 ALKIMEVP 180 (211)
T ss_pred HHHHHhhh
Confidence 99997654
No 57
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.4e-32 Score=186.43 Aligned_cols=162 Identities=35% Similarity=0.588 Sum_probs=140.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHH-HHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYS-AMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i 79 (191)
+.+||+++|++|||||||++++....+...+.++.+ +.......+++..+.+.+||++|++++. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 368999999999999999999998887766666655 3334456678888899999999999886 57888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCC---CCCHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKT---RMGVDDA 155 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~v~~l 155 (191)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++.++++..+++++++||++ +.+++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 9999999999999999999888766567899999999999875 55677888899999999999999998 8999999
Q ss_pred HHHHHHHH
Q psy11135 156 FYTLVREI 163 (191)
Q Consensus 156 ~~~i~~~~ 163 (191)
|..+.+.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99988765
No 58
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=3e-32 Score=184.46 Aligned_cols=162 Identities=33% Similarity=0.581 Sum_probs=140.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|||||||++++.+..+...+.++.+.. .......++....+.+||+||++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999988777666665533 334456777778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... .++.|+++|+||.|+.. ..+..+++..++...+++++++|++++.|++++|.++.
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~ 162 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA 162 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999887653 36789999999999974 56788888889999999999999999999999999998
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 163 ~~~~~ 167 (168)
T cd01866 163 KEIYE 167 (168)
T ss_pred HHHHh
Confidence 88754
No 59
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.5e-32 Score=184.35 Aligned_cols=160 Identities=36% Similarity=0.567 Sum_probs=138.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.+. ........++..+.+.+||+||+.++...+..+++.+++++++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 479999999999999999999988876666666653 3345566778778899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|++|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998887643 34689999999999876 55677788888888899999999999999999999998
Q ss_pred HHH
Q psy11135 161 REI 163 (191)
Q Consensus 161 ~~~ 163 (191)
..+
T Consensus 162 ~~i 164 (165)
T cd01868 162 TEI 164 (165)
T ss_pred HHh
Confidence 765
No 60
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2.3e-32 Score=184.22 Aligned_cols=162 Identities=59% Similarity=1.024 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|++|||||||++++....+...+.++....+......++..+.+.+||+||+.++...+..+++.+++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999999888888888777777777788888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
++++.++..+..|+..+.......+.|+++|+||+|+.. .....++...+.+.++++++++|++++.|++++|+++.+.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 999999999999998888765556899999999999976 4567777888888899999999999999999999999887
Q ss_pred HHh
Q psy11135 163 IKK 165 (191)
Q Consensus 163 ~~~ 165 (191)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04139 161 IRQ 163 (164)
T ss_pred HHh
Confidence 753
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=9.5e-33 Score=186.42 Aligned_cols=159 Identities=26% Similarity=0.497 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++....+...+.++.+. ........++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988877667776653 33344456777888999999999998888889999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
|+++++++..+..|+..+..... +.|+++|+||+|+....+.. +..++++..+++++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999877543 79999999999997544443 3456777778899999999999999999999988
Q ss_pred HHh
Q psy11135 163 IKK 165 (191)
Q Consensus 163 ~~~ 165 (191)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 865
No 62
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.5e-32 Score=184.92 Aligned_cols=157 Identities=34% Similarity=0.605 Sum_probs=135.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc--CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID--GETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+||+++|.+|+|||||++++.+..+...+.++.+..+ .....++ +..+.+.+|||||++++...+..+++.++++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999888777777765433 3344455 677889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+... ..+.|+++|+||+|+.. ..+..+++..+++.++++++++|++++.|++++|++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL 158 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999887653 35789999999999965 4567788889999999999999999999999999998
Q ss_pred HHH
Q psy11135 160 VRE 162 (191)
Q Consensus 160 ~~~ 162 (191)
...
T Consensus 159 ~~~ 161 (162)
T cd04106 159 AEK 161 (162)
T ss_pred HHh
Confidence 753
No 63
>KOG0395|consensus
Probab=100.00 E-value=5.6e-33 Score=190.30 Aligned_cols=167 Identities=57% Similarity=0.969 Sum_probs=157.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++++||+++|.+|+|||+|..++.+..+...|.||..+.+.....+++..+.+.++||+|++++..+...++.+.+++++
T Consensus 1 ~~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 1 LREYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CCceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
||++++..||+.+..++..+.+.......|+++|+||+|+.. +.++.++++.++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 999999999999999999996655666789999999999988 8899999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q psy11135 160 VREIKKDK 167 (191)
Q Consensus 160 ~~~~~~~~ 167 (191)
.+.+...+
T Consensus 161 ~r~~~~~~ 168 (196)
T KOG0395|consen 161 VREIRLPR 168 (196)
T ss_pred HHHHHhhh
Confidence 99887633
No 64
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.7e-32 Score=183.50 Aligned_cols=160 Identities=30% Similarity=0.535 Sum_probs=137.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..+||+++|++|+|||||++++....+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988877766666553 333455677777889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~ 158 (191)
+||+++++++..+..|+..+... ...+.|+++|+||+|+.. +....+++..+++..+. .++++|+++|.|++++|+.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999988663 345789999999999975 45677888889998886 6899999999999999999
Q ss_pred HHHH
Q psy11135 159 LVRE 162 (191)
Q Consensus 159 i~~~ 162 (191)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 8865
No 65
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=100.00 E-value=3.1e-32 Score=186.40 Aligned_cols=164 Identities=41% Similarity=0.683 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+.||+++|.+|+|||||++++....+...+.++....+......++..+.+.+||+||+.++...+..++..+++++++|
T Consensus 1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 36899999999999999999998888777777776655666677777888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++.+++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++|++++.|+.+++.++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988887765556789999999999875 445666677888888899999999999999999999998
Q ss_pred HHHhh
Q psy11135 162 EIKKD 166 (191)
Q Consensus 162 ~~~~~ 166 (191)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 77643
No 66
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.8e-32 Score=183.38 Aligned_cols=158 Identities=31% Similarity=0.543 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.+. .......+++..+.+.+||+||++.+...+..+++.+|+++++|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999998877666666553 33344567787888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++++++..+..|+..+... ..++.|+++|+||+|+.. ..+..+++..+++..+++++++|++++.|++++|+++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999887654 346789999999999975 567788889999999999999999999999999999887
Q ss_pred H
Q psy11135 162 E 162 (191)
Q Consensus 162 ~ 162 (191)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 5
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=3e-32 Score=183.18 Aligned_cols=159 Identities=26% Similarity=0.455 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|.+|||||||++++....+...+.++.. +........++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998887666655544 333444566788888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
|++++.++..+..|+..+... .++.|+++|+||+|+... ..++...+++..+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS--VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh--HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999888653 346899999999998532 2344566777788999999999999999999999988
Q ss_pred HHhh
Q psy11135 163 IKKD 166 (191)
Q Consensus 163 ~~~~ 166 (191)
+.+.
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 7764
No 68
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.1e-32 Score=187.71 Aligned_cols=157 Identities=36% Similarity=0.601 Sum_probs=137.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN 85 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (191)
|+++|++|||||||++++....+...+.++....+.....+++..+.+.+|||||++++..++..++..+|+++++||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999998888878777766666778888889999999999999999999999999999999999
Q ss_pred ChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135 86 SMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKTRM 150 (191)
Q Consensus 86 ~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 150 (191)
++++++.+. .|+..+... .++.|+++|+||+|+... .++.+++..+++..+. +++++||+++.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999986 588777654 357899999999998641 2677788889999996 99999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVREIK 164 (191)
Q Consensus 151 ~v~~l~~~i~~~~~ 164 (191)
|++++|+.+.+.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988764
No 69
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=1.7e-32 Score=183.45 Aligned_cols=153 Identities=25% Similarity=0.455 Sum_probs=129.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|+.|||||||+.++..+.+...+.++.. .+...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 5899999999999999999998887666655433 3445677888888899999999975 345678999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC---CCccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS---TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~i 159 (191)
+++++++..+..|+..+......++.|+++|+||.|+. .+.++.+++.+++++. +++|++|||++|.|++++|..+
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 99999999999999988776545678999999999984 3567888888999876 4899999999999999999998
Q ss_pred HHH
Q psy11135 160 VRE 162 (191)
Q Consensus 160 ~~~ 162 (191)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 754
No 70
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.7e-32 Score=188.98 Aligned_cols=156 Identities=30% Similarity=0.456 Sum_probs=127.7
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCccCCcc--ceEEEE--------EEEcCeEEEEEEEeCCChhhHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTI-QLIQNH-----FVDEYDPTIE--DSYRKQ--------VVIDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~-~l~~~~-----~~~~~~~~~~--~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 66 (191)
.+||+++|..|||||||+. ++.+.. +...+.||.+ +.+... ..+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 5899999999999999995 565443 3455667764 222221 24688899999999999875 3
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC--------------------Ccc
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST--------------------WAV 125 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------~~~ 125 (191)
....+++++|++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.. +.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 4566899999999999999999999997 5888776543 4789999999999863 567
Q ss_pred CHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 126 DMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
+.++++.+++.++++|+++||++|.|++++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999999998764
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=7.5e-32 Score=181.77 Aligned_cols=161 Identities=37% Similarity=0.657 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.+|+++++|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888766665655533 3345566777788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|++++++++.+..|+..+..+.. ++.|+++|+||+|+.. .....+.+..+++..+++++++|+.++.|+++++++|.+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 5799999999999876 556778888899999999999999999999999999998
Q ss_pred HHHh
Q psy11135 162 EIKK 165 (191)
Q Consensus 162 ~~~~ 165 (191)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8754
No 72
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=1.6e-32 Score=185.25 Aligned_cols=160 Identities=39% Similarity=0.730 Sum_probs=136.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-HHHHHhhcccCCEEEEEEe
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-SAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~i~v~d 83 (191)
||+++|++|||||||++++....+...+.++....+.....+++..+.+.+||+||+... ......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 689999999999999999998887777777776555666778888888999999998852 3456677889999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC-CHHHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTLV 160 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~l~~~i~ 160 (191)
++++++++.+..|+..+..... ..+.|+++|+||+|+.. ..+..+++..+++..+++|+++|++++. |++++|..+.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~ 160 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC 160 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence 9999999999999888876543 45799999999999864 5677888889999999999999999995 9999999998
Q ss_pred HHHH
Q psy11135 161 REIK 164 (191)
Q Consensus 161 ~~~~ 164 (191)
+.+.
T Consensus 161 ~~~~ 164 (165)
T cd04146 161 REVR 164 (165)
T ss_pred HHHh
Confidence 8765
No 73
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=187.17 Aligned_cols=163 Identities=32% Similarity=0.581 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|+|||||++++....+...+.++....+ .....+++..+.+.+|||+|++.+...+..++..+|++++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 47999999999999999999999887766666665333 44566788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... ....|+++|+||+|+.. +.+..++.+++++.++++++++|++++.|++++|.++.
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999988776543 35789999999999976 46788889999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 165 ~~~~~~ 170 (210)
T PLN03108 165 AKIYKK 170 (210)
T ss_pred HHHHHH
Confidence 888654
No 74
>KOG0088|consensus
Probab=100.00 E-value=1.2e-33 Score=179.79 Aligned_cols=168 Identities=30% Similarity=0.513 Sum_probs=148.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.|||+++|..=+|||||+-+++...+.....+|.. .+......+.+....+.||||+|++++..+.+.|++.++++++|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLV 92 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLV 92 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEE
Confidence 68999999999999999999998888666555554 34455566778888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++|.+||..++.|..+++.. ....+-+++|+||+|+.. +.++.+++..+++..|+.|+++||+++.|+.++|+.+.
T Consensus 93 yDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 93 YDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 9999999999999999999874 345688999999999987 78999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q psy11135 161 REIKKDKMLRG 171 (191)
Q Consensus 161 ~~~~~~~~~~~ 171 (191)
..+.+....++
T Consensus 172 ~~MiE~~s~~q 182 (218)
T KOG0088|consen 172 AKMIEHSSQRQ 182 (218)
T ss_pred HHHHHHhhhcc
Confidence 98887664443
No 75
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=6.8e-32 Score=181.52 Aligned_cols=159 Identities=33% Similarity=0.583 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+.....++....+ .....+++..+.+.+||+||++.+......+++.+|+++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999998887665666665433 333456777788999999999999888899999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
|+++++++..+..|+..+..+....+.|+++|+||+|+.......++...++...+++++++|+++|.|++++++++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 99999999999999998888766778999999999999877778888889999999999999999999999999998765
No 76
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=5.4e-32 Score=190.23 Aligned_cols=164 Identities=34% Similarity=0.587 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcc-cCCEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMR-TGEGFLL 80 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~ 80 (191)
+||+++|++|||||||++++..+.+. ..+.++.+ +.......+++..+.+.+||+||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999887775 56666654 4555667788888889999999998 334455566 8999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..++...++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999998887755456799999999999865 5567777888898889999999999999999999999
Q ss_pred HHHHHhhhhh
Q psy11135 160 VREIKKDKML 169 (191)
Q Consensus 160 ~~~~~~~~~~ 169 (191)
.+.+......
T Consensus 159 ~~~~~~~~~~ 168 (221)
T cd04148 159 VRQIRLRRDS 168 (221)
T ss_pred HHHHHhhhcc
Confidence 9998754433
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=6.1e-32 Score=192.21 Aligned_cols=161 Identities=39% Similarity=0.622 Sum_probs=139.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||++++..+.+...+.++..+.....+.+++..+.+.+|||+|++.+...+..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999999888888888877666777888989999999999999998888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc--------CCCCCcEEEEEecCCCCC-CccCHHHHHHHHHH-cCCCEEEeccCCCCCHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVK--------DAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~ 153 (191)
+++.++++.+..|+..+.... ...+.|+++|+||+|+.. ..+..+++.++... .+++++++||+++.|++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~ 160 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD 160 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence 999999999999988886531 224789999999999975 56777777777654 46789999999999999
Q ss_pred HHHHHHHHHHH
Q psy11135 154 DAFYTLVREIK 164 (191)
Q Consensus 154 ~l~~~i~~~~~ 164 (191)
++|++|...+.
T Consensus 161 elf~~L~~~~~ 171 (247)
T cd04143 161 EMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHhc
Confidence 99999998663
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=3.7e-32 Score=185.05 Aligned_cols=158 Identities=35% Similarity=0.567 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|++|+|||||++++..+.+...+.++....+.....+++..+.+.+|||||++.+...+..++..+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999888777777776666667788888889999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
+++++++..+. .|...+... .++.|+++|+||+|+.+. .++.+++..+++..++ +++++||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999886 566666543 467999999999998542 4667788889999986 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVREI 163 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~ 163 (191)
|.|++++|+.++..+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 79
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=5e-32 Score=186.99 Aligned_cols=155 Identities=26% Similarity=0.493 Sum_probs=135.2
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh
Q psy11135 9 VGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM 87 (191)
Q Consensus 9 ~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (191)
+|..|||||||++++..+.+...+.++.+ +.....+.+++..+.+.+|||+|++++..++..++++++++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998888777777776 34445566788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 88 KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 88 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
+++..+..|+..+.... .+.|+++|+||+|+....+..+. ..+++..++.|+++||++|.|++++|.+|.+.+.+.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999887753 47999999999999765565544 467788899999999999999999999999988664
No 80
>KOG0095|consensus
Probab=100.00 E-value=1.4e-32 Score=173.39 Aligned_cols=163 Identities=32% Similarity=0.520 Sum_probs=147.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
-|||+++|..|+|||.|++++.++-++.....|.+ +..-.+..+++..+++++|||+|++++++++..+++.+++++++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 37999999999999999999999999888777777 66677888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++-..+|+.+-+|+.++..+.. .+.--|+|+||+|+.+ ++++.+.+++|++.....|+++||++.+|++.+|..+.
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 999999999999999999998854 3567799999999988 47788888999999888999999999999999999988
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
..+...
T Consensus 166 ~rli~~ 171 (213)
T KOG0095|consen 166 CRLISE 171 (213)
T ss_pred HHHHHH
Confidence 777543
No 81
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.6e-31 Score=180.06 Aligned_cols=160 Identities=33% Similarity=0.575 Sum_probs=140.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++||+++|++|+|||||++++.+..+...+.++.+. .......+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999877656666554 3345667888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++.....|+..+.... .+..|+++++||+|+.. .....++...++...+++++++|+++|.|+++++++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999887653 36789999999999874 56677788888999999999999999999999999998
Q ss_pred HHH
Q psy11135 161 REI 163 (191)
Q Consensus 161 ~~~ 163 (191)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 875
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.2e-31 Score=180.23 Aligned_cols=158 Identities=30% Similarity=0.533 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.+ +........++..+.+.+||+||+..+...+..+++.++++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999887666666555 344555667777788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-CCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++++++..+..|+..+.... ..+.|+++|+||+|+. ......++...+++..+++++++|++++.|+++++++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999998876542 2368999999999994 4567888888899898999999999999999999999976
Q ss_pred H
Q psy11135 162 E 162 (191)
Q Consensus 162 ~ 162 (191)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 4
No 83
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=5.7e-32 Score=183.93 Aligned_cols=156 Identities=34% Similarity=0.569 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+|++++|++|+|||||+.++....+...+.++..+.+.....+++..+.+.+||+||+.++...+..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999998888888888776666677788888889999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
++++++++.+. .|+..+... .++.|+++|+||+|+.. ..+..+++..+++..+. +++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999885 577777643 34689999999999853 35677788999999987 899999999
Q ss_pred CCCHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVR 161 (191)
Q Consensus 149 ~~~v~~l~~~i~~ 161 (191)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998763
No 84
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.4e-31 Score=185.05 Aligned_cols=164 Identities=30% Similarity=0.435 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhH--------HHHHHhhccc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEY--------SAMRDQYMRT 74 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~ 74 (191)
+||+++|.+|||||||++++.++.+...+.|++... +.....+++..+.+.+|||||...+ .......++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 589999999999999999999988877777777533 3344567888888999999996532 1123445789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC-CccCHHHHHHHHH-HcCCCEEEeccCCCC
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST-WAVDMNQAQELAE-QFNIPFIKTSAKTRM 150 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 150 (191)
+|++++|||++++++++.+..|+..+.... ...+.|+++|+||+|+.. +.+..++.+.+++ .++++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 246789999999999965 3456666666654 568999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy11135 151 GVDDAFYTLVREIKKDK 167 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~ 167 (191)
|++++|+.++..+..+.
T Consensus 161 ~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 161 HILLLFKELLISATTRG 177 (198)
T ss_pred CHHHHHHHHHHHhhccC
Confidence 99999999998776433
No 85
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.8e-31 Score=182.93 Aligned_cols=172 Identities=22% Similarity=0.364 Sum_probs=134.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+.+||+++|.+|||||||++++....+... .++.+... ...... ++..+.+.+|||||++++...+..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 679999999999999999999998876544 34444222 222222 445678999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH--H----cCCCEEEeccCCCCCHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE--Q----FNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~----~~~~~~~~s~~~~~~v~ 153 (191)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.. ....++...+.. . .+++++++||+++.|++
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN-ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc-cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 9999999999988888888877655556799999999999864 334444444432 1 12468899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh
Q psy11135 154 DAFYTLVREIKKDKMLRGKEKK 175 (191)
Q Consensus 154 ~l~~~i~~~~~~~~~~~~~~~~ 175 (191)
+++++|.+.+.+.+..++.+++
T Consensus 160 ~l~~~l~~~l~~~~~~~~~~~~ 181 (183)
T cd04152 160 EGLEKLYEMILKRRKMLRQQKK 181 (183)
T ss_pred HHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999877766666554
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=3e-31 Score=178.87 Aligned_cols=158 Identities=35% Similarity=0.509 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCCccceE-EEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN--HFVDEYDPTIEDSY-RKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+||+++|++|||||||++++... .+...+.++.+..+ ......+ +..+.+.+|||||+..+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 46677777775333 3334443 56788999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
++||+++++++..+..|+..+.... .+.|+++|+||+|+.+ ..+...+.+.++...+++++++|+.++.|++++|+.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 158 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES 158 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence 9999999999999999998887643 4689999999999965 456666677788888899999999999999999999
Q ss_pred HHHHH
Q psy11135 159 LVREI 163 (191)
Q Consensus 159 i~~~~ 163 (191)
+.+.+
T Consensus 159 l~~~~ 163 (164)
T cd04101 159 LARAF 163 (164)
T ss_pred HHHHh
Confidence 98765
No 87
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=100.00 E-value=3.1e-31 Score=178.00 Aligned_cols=158 Identities=61% Similarity=1.030 Sum_probs=141.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|++|||||||++++.+..+...+.++...........++..+.+.+||+||+..+...+..+++.+|+++++||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999888888888887766666677777788899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
++++++..+..|+..+.........|+++|+||+|+.. .....+++..+++.++++++++|++++.|+++++++|.+.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 99999999999999888765546899999999999987 6677788889999999999999999999999999999865
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=6.2e-31 Score=178.62 Aligned_cols=163 Identities=34% Similarity=0.594 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|||||||++++.+..+...+.++.. +.......+++..+.+.+||+||++.+...+..+++.+|+++++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999998887666666655 333445667888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~~ 157 (191)
|+++++++..+..|...+..... ..+.|+++|+||+|+.. .....++...+.+..+ ++++++|+++|.|++++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877655433 33789999999999984 5567778888888887 7999999999999999999
Q ss_pred HHHHHHHhh
Q psy11135 158 TLVREIKKD 166 (191)
Q Consensus 158 ~i~~~~~~~ 166 (191)
+|.+.+.+.
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999888765
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=8e-31 Score=176.33 Aligned_cols=159 Identities=33% Similarity=0.621 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|+|||||++++.+..+...+.++... .........+..+.+.+||+||+..+...+..+++.+|+++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 68999999999999999999998876655555543 33444556677778999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++++++..+..|+..+..... .+.|+++|+||+|+.. ..+..++..++++..+++++++|++++.|+++++++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877543 3789999999999975 456677788888889999999999999999999999987
Q ss_pred HH
Q psy11135 162 EI 163 (191)
Q Consensus 162 ~~ 163 (191)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 64
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.8e-31 Score=181.61 Aligned_cols=160 Identities=38% Similarity=0.599 Sum_probs=135.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|.+|||||||++++....+...+.++........+.+.+..+.+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988877777776655555667778778899999999999988888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--CccCHHHHHHHHH-HcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--WAVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
+++++++.+..|+..+.......+.|+++|+||+|+.. ..+..++..+... .++.+++++|+++|.|++++|++|.+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999998888766656799999999999865 3344444444433 55678999999999999999999999
Q ss_pred HHH
Q psy11135 162 EIK 164 (191)
Q Consensus 162 ~~~ 164 (191)
.+.
T Consensus 161 ~~~ 163 (198)
T cd04147 161 QAN 163 (198)
T ss_pred Hhh
Confidence 875
No 91
>KOG0086|consensus
Probab=100.00 E-value=3.7e-31 Score=167.54 Aligned_cols=161 Identities=34% Similarity=0.556 Sum_probs=143.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE-EEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+|++++|+.|.|||.|+.++....+..+...|.+..+. ..+.+.++.+++++|||+|++++++....|++.+.+.++||
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVY 89 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 89 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEE
Confidence 79999999999999999999999987777777775443 34567888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|+++.++|+.+..|+...+.. ..+++-+++++||.|+.+ ++++..++..|+.+..+.++++|+++|+|+++.|-...+
T Consensus 90 D~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 90 DITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred eccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 999999999999999998774 456788999999999987 789999999999999999999999999999999987666
Q ss_pred HHHh
Q psy11135 162 EIKK 165 (191)
Q Consensus 162 ~~~~ 165 (191)
.+..
T Consensus 169 tIl~ 172 (214)
T KOG0086|consen 169 TILN 172 (214)
T ss_pred HHHH
Confidence 6643
No 92
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=9e-31 Score=180.04 Aligned_cols=173 Identities=33% Similarity=0.546 Sum_probs=141.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
.||+++|+.|+|||||++++....+...+.++....+.....+++....+.+||++|++.+.......+..+++++++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988776666666666666566678878889999999998887777777889999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-----------CccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-----------WAVDMNQAQELAEQFNI-PFIKTSAKTRM 150 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 150 (191)
+++.+++..+. .|+..+.... ++.|+++|+||+|+.. ..+..++...+++..+. +++++||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999986 5777776532 4699999999999853 23456778888999985 89999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhccccCCCccccceec
Q psy11135 151 GVDDAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQCCVL 190 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (191)
|++++|+++.+.+...+. +++--+||.+
T Consensus 160 ~v~~~f~~l~~~~~~~~~------------~~~~~~~~~~ 187 (187)
T cd04129 160 GVDDVFEAATRAALLVRK------------SEPGAGCCII 187 (187)
T ss_pred CHHHHHHHHHHHHhcccC------------cccccCcccC
Confidence 999999999987755332 2344688875
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=3.9e-31 Score=178.79 Aligned_cols=155 Identities=17% Similarity=0.261 Sum_probs=122.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|.+|||||||++++....+.. +.++.+.... . +....+.+.+|||||++++...+..+++.+|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-T--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 67899999999999999999998766543 4455553332 2 223456799999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~ 156 (191)
||++++.++..+..|+..+.......+.|+++|+||+|+.. .+..+++.++... ..++++++||++|.|++++|
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD-AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc-CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence 99999999999988887776533335689999999999865 3455666554321 22468999999999999999
Q ss_pred HHHHH
Q psy11135 157 YTLVR 161 (191)
Q Consensus 157 ~~i~~ 161 (191)
++|.+
T Consensus 163 ~~l~~ 167 (168)
T cd04149 163 TWLSS 167 (168)
T ss_pred HHHhc
Confidence 99864
No 94
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.5e-31 Score=177.91 Aligned_cols=161 Identities=24% Similarity=0.321 Sum_probs=135.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEE-EEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+.+||+++|.+|||||||++++.+..+. ..+.+|....+. ....+++..+.+.+||++|++.+...+..++..+|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999999887 788888775543 44667888788999999999998888888899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~ 157 (191)
+|||++++++++.+..|+..+.. ..+.|+++|+||+|+.+ ......+..++++.+++ .++++||+++.|++++|+
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 99999999999988888875532 23689999999999865 33334556778888887 479999999999999999
Q ss_pred HHHHHHHh
Q psy11135 158 TLVREIKK 165 (191)
Q Consensus 158 ~i~~~~~~ 165 (191)
.|.+.+..
T Consensus 160 ~l~~~~~~ 167 (169)
T cd01892 160 KLATAAQY 167 (169)
T ss_pred HHHHHhhC
Confidence 99987753
No 95
>KOG0393|consensus
Probab=99.98 E-value=6.3e-32 Score=181.31 Aligned_cols=165 Identities=38% Similarity=0.589 Sum_probs=150.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..+|++++|+.++|||+|+..+..+.++..|.||..+.+.....++ ++.+.+.+|||+|+++|+.++...+..+|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 5789999999999999999999999999999999999999999995 999999999999999999988888999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEec
Q psy11135 81 VFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTS 145 (191)
Q Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s 145 (191)
||++.++++++++ .+|+.++.+++ ++.|+++|++|.|++. ..+..+++..++++.| ..|++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 9999999999997 57888888865 7899999999999974 2567888999999999 5899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 146 AKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
|++..|++++|+..+........
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999988887776554
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=3e-30 Score=175.75 Aligned_cols=158 Identities=33% Similarity=0.577 Sum_probs=133.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
.||+++|++|||||||++++....+...+.++....+.....+++..+.+.+|||+|++++...+...+..+|+++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999888778888776666667788888889999999999998888888999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
++++++++.+. .|...+... ..+.|+++|+||+|+... .+...+.+++++..+. +++++||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 99999998885 466666553 347899999999998542 2345677788888774 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVREI 163 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~ 163 (191)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.98 E-value=2e-30 Score=177.21 Aligned_cols=156 Identities=17% Similarity=0.318 Sum_probs=122.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|..|||||||++++...++.. +.||.+.... . ++...+.+.+||+||++++..++..+++++|++++|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999998777653 4556553332 2 333456799999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC--------CEEEeccCCCCCHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI--------PFIKTSAKTRMGVD 153 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~v~ 153 (191)
||+++++++.....++..+......++.|+++|+||+|+... ...+ ++.+.+++ .++++||++|+|+.
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~-~~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA-MNAA---EITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC-CCHH---HHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999988887777654333357899999999998753 3333 33444443 35689999999999
Q ss_pred HHHHHHHHHHHh
Q psy11135 154 DAFYTLVREIKK 165 (191)
Q Consensus 154 ~l~~~i~~~~~~ 165 (191)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887754
No 98
>KOG0081|consensus
Probab=99.98 E-value=4.9e-32 Score=172.54 Aligned_cols=166 Identities=31% Similarity=0.510 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEE---------cCeEEEEEEEeCCChhhHHHHHHhhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVI---------DGETALLDILDTAGQEEYSAMRDQYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~D~~g~~~~~~~~~~~~~ 73 (191)
+|.+.+|+.|+|||+++.++..+.+......|.+.. ..+...+ .+..+.+++|||+|++++++++..+++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR 89 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR 89 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence 466789999999999999999999888777777633 2333332 234577899999999999999999999
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
.+-+++++||+++..||.+++.|+.++.......+..+++.+||+|+.+ +.++.+++.++++++|+|||++||-+|.|+
T Consensus 90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv 169 (219)
T KOG0081|consen 90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV 169 (219)
T ss_pred hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence 9999999999999999999999999998777777888999999999988 668889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy11135 153 DDAFYTLVREIKKDKML 169 (191)
Q Consensus 153 ~~l~~~i~~~~~~~~~~ 169 (191)
++..+.++..+.++-..
T Consensus 170 ~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 170 EKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999988888765444
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=9.3e-30 Score=170.34 Aligned_cols=156 Identities=36% Similarity=0.650 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|++|+|||||++++.+..+...+.++... ........++....+.+||+||+..+...+..+++++|++++++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999877765555553 33445556677788999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-CCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|+++++++..+..|+..+.... ..+.|+++++||+|+. ......++...++..++++++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999999998887753 2568999999999997 566778888899999999999999999999999999885
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=1.9e-30 Score=175.73 Aligned_cols=158 Identities=18% Similarity=0.308 Sum_probs=126.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|.+|||||||++++.+..+.. +.+|.+.... . ++...+.+.+||+||+.++...+..++..+|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999887643 4555543332 2 333456689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC------CCEEEeccCCCCCHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN------IPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~l~~~ 158 (191)
++++++..+..|+..+.......+.|+++|+||+|+.. .+..++...+++..+ +.++++||++|.|++++|++
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~ 155 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG-ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW 155 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc-CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence 99999999999988887543345689999999999864 456676766654322 26789999999999999999
Q ss_pred HHHHHHhhh
Q psy11135 159 LVREIKKDK 167 (191)
Q Consensus 159 i~~~~~~~~ 167 (191)
|.+.+.+..
T Consensus 156 l~~~~~~~~ 164 (169)
T cd04158 156 LSRQLVAAG 164 (169)
T ss_pred HHHHHhhcc
Confidence 998877654
No 101
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.1e-29 Score=170.66 Aligned_cols=160 Identities=31% Similarity=0.520 Sum_probs=134.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.++|+++|++|||||||++++....+...+.++.+ +.......+++..+.+.+||+||+..+...+..++..+|+++++
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 86 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT 86 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999998776655555544 33344556778778899999999999999889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++.+++..+..|+..+... ...+.|.++|+||+|+.. .++..+....+.+....+++++|+++|.|++++|++|.
T Consensus 87 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 87 YDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred EECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999998998877654 334689999999999875 55666667788887778999999999999999999998
Q ss_pred HHH
Q psy11135 161 REI 163 (191)
Q Consensus 161 ~~~ 163 (191)
+.+
T Consensus 166 ~~~ 168 (169)
T cd04114 166 CRL 168 (169)
T ss_pred HHh
Confidence 754
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=2e-30 Score=173.93 Aligned_cols=153 Identities=17% Similarity=0.289 Sum_probs=117.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||++++..+.+. .+.|+.+.... . +....+.+.+||+||++++...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999877765 35566554332 2 22345668999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHH----HHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELA----EQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
++++.++..+..++..+.........|+++++||+|+.+. ...++. ..+. ...++.++++||++|.|++++|++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~ 155 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA-MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW 155 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC-CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence 9999999999888877755333346899999999998652 222232 2221 112345789999999999999999
Q ss_pred HHH
Q psy11135 159 LVR 161 (191)
Q Consensus 159 i~~ 161 (191)
|.+
T Consensus 156 l~~ 158 (159)
T cd04150 156 LSN 158 (159)
T ss_pred Hhc
Confidence 864
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.7e-30 Score=175.17 Aligned_cols=157 Identities=18% Similarity=0.269 Sum_probs=120.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|.+|||||||++++..+.+. .+.||.+.... .... ..+.+.+||+||++++...+..++++++++++|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 4799999999999999999999876653 34566553332 2223 346689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||++++++++....++..+.......+.|+++|+||.|+... ...++...... ...+.++++||++|+|++++|
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~ 166 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA-MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL 166 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC-CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999999988888765333356899999999998652 23333222211 112346789999999999999
Q ss_pred HHHHHHH
Q psy11135 157 YTLVREI 163 (191)
Q Consensus 157 ~~i~~~~ 163 (191)
++|...+
T Consensus 167 ~~l~~~~ 173 (175)
T smart00177 167 TWLSNNL 173 (175)
T ss_pred HHHHHHh
Confidence 9987764
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.6e-30 Score=174.83 Aligned_cols=159 Identities=21% Similarity=0.307 Sum_probs=121.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|++|||||||++++..+.+.. +.+|.+..+. . ++...+.+.+||+||++++...+..+++.+|++++|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~--~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-T--VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-E--EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999998777654 4556554332 2 233456799999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++.....++..+.......+.|+++|+||.|+.. ....++...... ...+.++++||++|.|++++|
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~ 170 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN-AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL 170 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC-CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence 99999999998888777765432334689999999999864 223333222111 112346789999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
++|.+.+.+
T Consensus 171 ~~l~~~i~~ 179 (182)
T PTZ00133 171 DWLSANIKK 179 (182)
T ss_pred HHHHHHHHH
Confidence 999887765
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=1.2e-29 Score=172.17 Aligned_cols=156 Identities=37% Similarity=0.610 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||++++.+..+...+.++...........++..+.+.+||+||++++......+++.+|+++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 68999999999999999999999887777777766666667778888899999999999888888888899999999999
Q ss_pred CCChhhHHHHHH-HHHHHHhhcCCCCCcEEEEEecCCCCCCc------------cCHHHHHHHHHHcCC-CEEEeccCCC
Q psy11135 84 VNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDLSTWA------------VDMNQAQELAEQFNI-PFIKTSAKTR 149 (191)
Q Consensus 84 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~s~~~~ 149 (191)
+++++++..... |+..+.... .+.|+++|+||+|+.... +..+++..+...++. +++++|+++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999998887754 555555432 379999999999987632 346677888888887 9999999999
Q ss_pred CCHHHHHHHHHH
Q psy11135 150 MGVDDAFYTLVR 161 (191)
Q Consensus 150 ~~v~~l~~~i~~ 161 (191)
.|+++++++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 106
>KOG0083|consensus
Probab=99.97 E-value=9.2e-32 Score=166.60 Aligned_cols=162 Identities=35% Similarity=0.597 Sum_probs=142.9
Q ss_pred EEEcCCCCCHHHHHHHHHhCCC-CCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 7 VVVGAGGVGKSALTIQLIQNHF-VDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
+++|.+++|||.|+-++..+.+ .....++.+ +.....+..++..+.+++|||+|++++++....+++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 4789999999999999887774 455556666 45566677899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
.+..||++.+.|+.++..+.. ....+.+++||+|+.+ +.+..++.+.+++.+++||+++|+++|.|++..|-.|.+.+
T Consensus 81 ankasfdn~~~wlsei~ey~k-~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAK-EAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHH-hhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 999999999999999998754 3578899999999976 77888999999999999999999999999999999999988
Q ss_pred Hhhhhh
Q psy11135 164 KKDKML 169 (191)
Q Consensus 164 ~~~~~~ 169 (191)
.+....
T Consensus 160 ~k~~~~ 165 (192)
T KOG0083|consen 160 KKLKMG 165 (192)
T ss_pred HHhccC
Confidence 765443
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=2e-29 Score=171.38 Aligned_cols=155 Identities=18% Similarity=0.259 Sum_probs=121.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+++|+++|++|||||||++++.+..+. .+.++.+.. ......+ .+.+.+||+||++.+...+..++..+|++++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 5789999999999999999999977543 344444422 2223344 45689999999999998999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||++++.++.....|+..+.......+.|+++|+||+|+.... ..++...+.. ..+++++++||++|.|++++|
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence 9999999999888888777654344679999999999987532 4455554443 235689999999999999999
Q ss_pred HHHHH
Q psy11135 157 YTLVR 161 (191)
Q Consensus 157 ~~i~~ 161 (191)
+++..
T Consensus 168 ~~l~~ 172 (173)
T cd04154 168 DWLVD 172 (173)
T ss_pred HHHhc
Confidence 99863
No 108
>KOG0097|consensus
Probab=99.97 E-value=2.4e-29 Score=157.50 Aligned_cols=161 Identities=30% Similarity=0.550 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
||.+++|+-|+|||.|+..+...++..+++.+.+..+.. .+.+.+..+.+++|||+|+++++...+.+++.+.+.+.||
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvy 91 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 91 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEE
Confidence 788999999999999999999999999998888855543 4567899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|++..+++..+..|+...... -.++..+++++||.|+.. +++..+++++|+++.|.-|+++|+++|.++++.|-+...
T Consensus 92 ditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 92 DITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAK 170 (215)
T ss_pred EehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHH
Confidence 999999999999999887764 456788999999999987 789999999999999999999999999999999988777
Q ss_pred HHHh
Q psy11135 162 EIKK 165 (191)
Q Consensus 162 ~~~~ 165 (191)
.+..
T Consensus 171 kiyq 174 (215)
T KOG0097|consen 171 KIYQ 174 (215)
T ss_pred HHHH
Confidence 7654
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=7.6e-29 Score=167.47 Aligned_cols=158 Identities=25% Similarity=0.416 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|.+|||||||++++..+.+...++++. ........+++..+.+.+|||||...+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999988766544333 2333444566777889999999998887777778899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHHHHHHHcC--CCEEEeccCCCCCHHHHHH
Q psy11135 84 VNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQELAEQFN--IPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 84 ~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~ 157 (191)
++++++++.+. .|...+.... .+.|+++|+||+|+.+.... .++...++..+. .+++++||+++.|++++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 99999999985 5666665432 47899999999999764332 233334444443 3799999999999999999
Q ss_pred HHHHHHH
Q psy11135 158 TLVREIK 164 (191)
Q Consensus 158 ~i~~~~~ 164 (191)
.+...+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9887764
No 110
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=5.8e-30 Score=172.44 Aligned_cols=151 Identities=20% Similarity=0.301 Sum_probs=123.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN 85 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (191)
|+++|++|||||||++++.+..+...+.++.+... ..++...+.+.+||+||+.++...+..+++++|++++|||.+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence 78999999999999999998877777777765332 234555677999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH-----HHHHHHHHHcCCCEEEeccCC------CCCHHH
Q psy11135 86 SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM-----NQAQELAEQFNIPFIKTSAKT------RMGVDD 154 (191)
Q Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-----~~~~~~~~~~~~~~~~~s~~~------~~~v~~ 154 (191)
++.++.....|+..+... .++.|+++|+||.|+....... ..+..++++.+++++++||++ ++|+++
T Consensus 79 ~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~ 156 (164)
T cd04162 79 DSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD 156 (164)
T ss_pred CHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence 999999998888877643 2579999999999986532111 124556667788899988888 999999
Q ss_pred HHHHHHH
Q psy11135 155 AFYTLVR 161 (191)
Q Consensus 155 l~~~i~~ 161 (191)
+|+.+++
T Consensus 157 ~~~~~~~ 163 (164)
T cd04162 157 LLSQLIN 163 (164)
T ss_pred HHHHHhc
Confidence 9998864
No 111
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=3.1e-28 Score=170.97 Aligned_cols=165 Identities=30% Similarity=0.545 Sum_probs=138.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+..+||+++|++|||||||++++..+.+...+.++.+..+ ......+++.+.+.+||++|+.++...+..++..+++++
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i 86 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI 86 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence 3579999999999999999999888887777777776433 333445778889999999999999888899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
++||+++..++..+..|+..+.... .+.|+++++||+|+.......+. ..+++..++.++++|+++|.|++++|.+|
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i 163 (215)
T PTZ00132 87 IMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLWL 163 (215)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999998887643 46899999999998765444443 45777788899999999999999999999
Q ss_pred HHHHHhhhh
Q psy11135 160 VREIKKDKM 168 (191)
Q Consensus 160 ~~~~~~~~~ 168 (191)
.+.+.....
T Consensus 164 a~~l~~~p~ 172 (215)
T PTZ00132 164 ARRLTNDPN 172 (215)
T ss_pred HHHHhhccc
Confidence 998876544
No 112
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=8e-29 Score=168.52 Aligned_cols=155 Identities=19% Similarity=0.299 Sum_probs=119.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|+|||||++++..+.+.. ..++.+..+. ....+ ...+.+||+||++++...+..++..+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 46899999999999999999999877654 3445443332 23333 45689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHH----HHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELA----EQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
+|+++++++.....++..+.......+.|+++++||+|+.. ....++. ..+. +..+++++++||++|.|++++|
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~-~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG-AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC-CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence 99999999888888777775543345689999999999865 2233332 2222 2334679999999999999999
Q ss_pred HHHHH
Q psy11135 157 YTLVR 161 (191)
Q Consensus 157 ~~i~~ 161 (191)
++|.+
T Consensus 169 ~~l~~ 173 (174)
T cd04153 169 DWIAS 173 (174)
T ss_pred HHHhc
Confidence 99864
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.5e-28 Score=165.39 Aligned_cols=153 Identities=19% Similarity=0.266 Sum_probs=116.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+|+++|++|||||||++++.+.. ....+.++.+..... +....+.+.+|||||+.++...+..++..++++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES---FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE---EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 345555665533222 22345668999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
++++.++..+..|+..+.... ...+.|+++|+||+|+.... ..++...... ...++++++||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence 999999988888887775532 23579999999999987532 2222222211 112458999999999999999
Q ss_pred HHHHH
Q psy11135 157 YTLVR 161 (191)
Q Consensus 157 ~~i~~ 161 (191)
++|.+
T Consensus 157 ~~l~~ 161 (162)
T cd04157 157 QWLQA 161 (162)
T ss_pred HHHhc
Confidence 99864
No 114
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=5.9e-28 Score=166.57 Aligned_cols=156 Identities=21% Similarity=0.343 Sum_probs=123.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+..||+++|++|||||||++++.+..+. .+.++..... ..+.+++ ..+.+||+||+..+...+..++..++++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4789999999999999999999987753 3444444322 3344554 4588999999999888889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH----------------cCCCEEEec
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ----------------FNIPFIKTS 145 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~~s 145 (191)
+|+++.+++.....++..+.......+.|+++++||+|+.. .+..++.+..... ..++++++|
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-CcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 99999998888888888876644456789999999999864 4556666655532 224689999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy11135 146 AKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~ 162 (191)
|+++.|++++|++|.+.
T Consensus 173 a~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 173 VVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ecCCCChHHHHHHHHhh
Confidence 99999999999999765
No 115
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.1e-27 Score=165.40 Aligned_cols=147 Identities=22% Similarity=0.315 Sum_probs=119.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE-EEEEE-----cCeEEEEEEEeCCChhhHHHHHHhhcccCCE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVI-----DGETALLDILDTAGQEEYSAMRDQYMRTGEG 77 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~ 77 (191)
+||+++|..|||||||++++....+...+.+|.+..+. ....+ ++..+.+.+|||+|++++..++..+++++++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 68999999999999999999999887777777763332 22333 2567889999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhc------------------CCCCCcEEEEEecCCCCCC-ccCHH----HHHHHH
Q psy11135 78 FLLVFAVNSMKSFEDIGSYREQIKRVK------------------DAEEVPMVLVGNKCDLSTW-AVDMN----QAQELA 134 (191)
Q Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~-~~~~~----~~~~~~ 134 (191)
+++|||++++++++.+..|+..+.... ...+.|+++|+||.|+.+. .+..+ ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999886532 1246899999999999763 33333 245778
Q ss_pred HHcCCCEEEeccCCCC
Q psy11135 135 EQFNIPFIKTSAKTRM 150 (191)
Q Consensus 135 ~~~~~~~~~~s~~~~~ 150 (191)
++++++.++.++.++.
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 9999999988877543
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=5e-28 Score=162.22 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=113.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|++|+|||||++++....+.. ..++.+.... . ++.....+++|||||+.++...+..++..++++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998776543 3444443222 2 233446689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HHH----HHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-ELA----EQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
+++.++.....++..+.......+.|+++|+||+|+.... ...+.. .+. ...+.+++++||+++.|++++|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL 155 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence 9988877776666655443333578999999999986532 222222 221 1123469999999999999999998
Q ss_pred HH
Q psy11135 160 VR 161 (191)
Q Consensus 160 ~~ 161 (191)
.+
T Consensus 156 ~~ 157 (158)
T cd04151 156 VN 157 (158)
T ss_pred hc
Confidence 64
No 117
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=5.7e-28 Score=161.94 Aligned_cols=152 Identities=19% Similarity=0.294 Sum_probs=118.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
||+++|.+|||||||++++.+... ..+.++.+.... ...++ .+.+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999998873 333444443222 22333 45689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
++++++.....++..+.......+.|+++|+||+|+.... ..++..+... ...++++++|+++|.|++++|++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 9999999998888887665555689999999999987633 3333333322 134579999999999999999998
Q ss_pred HH
Q psy11135 160 VR 161 (191)
Q Consensus 160 ~~ 161 (191)
..
T Consensus 156 ~~ 157 (158)
T cd00878 156 LQ 157 (158)
T ss_pred hh
Confidence 75
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=4.3e-28 Score=162.84 Aligned_cols=153 Identities=22% Similarity=0.323 Sum_probs=116.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
+|+++|++|||||||++++.+..+... .++.+... ..... +..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999998886543 34444222 22222 3456799999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH------HHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL------AEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+++.++.....|+..+.......+.|+++|+||+|+... ...++.... ....+++++++||++|.|++++|++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~ 156 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA-LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK 156 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC-cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence 999999888888877765433357899999999998642 223333221 1223457899999999999999999
Q ss_pred HHH
Q psy11135 159 LVR 161 (191)
Q Consensus 159 i~~ 161 (191)
|.+
T Consensus 157 i~~ 159 (160)
T cd04156 157 LAS 159 (160)
T ss_pred Hhc
Confidence 864
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=1.4e-27 Score=161.38 Aligned_cols=153 Identities=24% Similarity=0.353 Sum_probs=116.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGF 78 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 78 (191)
+|+++|++|+|||||++++.+... ...+.++..... ....++ ...+.+|||||+..+...+..++..++++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999976432 112223333222 223344 35588999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-------cCCCEEEeccCCCCC
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-------FNIPFIKTSAKTRMG 151 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~ 151 (191)
++|+|+++++++.....++..+.+.....+.|+++|+||+|+.. ....++...+.+. .+++++++||++|.|
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 156 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD-ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG 156 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc-CCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence 99999999988888888888876644456799999999999865 3344444444332 245799999999999
Q ss_pred HHHHHHHHHH
Q psy11135 152 VDDAFYTLVR 161 (191)
Q Consensus 152 v~~l~~~i~~ 161 (191)
+++++++|..
T Consensus 157 v~e~~~~l~~ 166 (167)
T cd04160 157 VREGIEWLVE 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=5.9e-28 Score=163.19 Aligned_cols=152 Identities=15% Similarity=0.224 Sum_probs=118.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
+|+++|.+|||||||++++.+. +...+.++.+... ..... ..+.+.+||+||+.++...+..++++++++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~-~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP-TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE-EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4799999999999999999876 5555566655432 23333 345689999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH------HHHHHHcC--CCEEEeccCCC------C
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA------QELAEQFN--IPFIKTSAKTR------M 150 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~------~ 150 (191)
++..++..+..|+..+.......+.|+++|+||.|+.... ...+. ..+++..+ +.++++||++| .
T Consensus 77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL-LGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC-CHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 9999999999999888765444678999999999987632 22221 22332233 56888999998 8
Q ss_pred CHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVR 161 (191)
Q Consensus 151 ~v~~l~~~i~~ 161 (191)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=9.8e-27 Score=159.54 Aligned_cols=156 Identities=17% Similarity=0.292 Sum_probs=119.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++++|+++|.+|||||||++++.+..+.. +.++.... ......+ .+.+.+||+||+..+...+..++.+++++++|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPT-SEELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 36899999999999999999999876543 23333322 2223333 35588999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH------------cCCCEEEeccCCC
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ------------FNIPFIKTSAKTR 149 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~~ 149 (191)
+|+++++++.....++..+.......+.|+++|+||+|+.. .++.++....... ....++++|++++
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~ 170 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY-AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR 170 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC-CCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence 99999999988888887776543445789999999999864 3444544332210 1235899999999
Q ss_pred CCHHHHHHHHHHH
Q psy11135 150 MGVDDAFYTLVRE 162 (191)
Q Consensus 150 ~~v~~l~~~i~~~ 162 (191)
.|+++++++|...
T Consensus 171 ~g~~~~~~wl~~~ 183 (184)
T smart00178 171 MGYGEGFKWLSQY 183 (184)
T ss_pred CChHHHHHHHHhh
Confidence 9999999999764
No 122
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.95 E-value=1.9e-26 Score=154.30 Aligned_cols=153 Identities=20% Similarity=0.321 Sum_probs=118.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN 85 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 85 (191)
|+++|++|||||||++++.+.++...+.++.+..... ....+ +.+.+||+||+..+...+..++..+|++++++|++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence 7899999999999999999998877777766644332 23333 66899999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH----HHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 86 SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 86 ~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
+.+++.....++..+.......+.|+++|+||+|+.......+....+ .....++++++|++++.|+++++++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 999888888877777654334578999999999987532211111121 1122357899999999999999999864
No 123
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=1.8e-26 Score=156.79 Aligned_cols=157 Identities=24% Similarity=0.406 Sum_probs=124.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|..||||||+++++....... ..||.+... ..+.+++ +.+.+||.+|+..++..|+.++..++++++|
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeEEE
Confidence 47899999999999999999998765433 344544332 2334444 4488999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH------cCCCEEEeccCCCCCHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ------FNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~v~~l 155 (191)
+|.++.+.+.+....+..+.......+.|+++++||.|+.. ....++....... ..+.++.+|+.+|+|+.+.
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~-~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~ 167 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD-AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEG 167 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT-SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccC-cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHH
Confidence 99999999999988888887755556899999999999875 3455555544322 2345899999999999999
Q ss_pred HHHHHHHH
Q psy11135 156 FYTLVREI 163 (191)
Q Consensus 156 ~~~i~~~~ 163 (191)
++||.+++
T Consensus 168 l~WL~~~~ 175 (175)
T PF00025_consen 168 LEWLIEQI 175 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998864
No 124
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.3e-26 Score=165.38 Aligned_cols=138 Identities=20% Similarity=0.387 Sum_probs=115.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEc-------------CeEEEEEEEeCCChhhHHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVID-------------GETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~~D~~g~~~~~~~ 67 (191)
..+||+++|..|||||||++++....+...+.+|.+..+ ...+.++ +..+.++||||+|++.+..+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 579999999999999999999999888777777776433 3334443 25678999999999999999
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----------CCCCcEEEEEecCCCCCCc-------cCHHH
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-----------AEEVPMVLVGNKCDLSTWA-------VDMNQ 129 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~-------~~~~~ 129 (191)
+..++++++++|+|||+++.++++.+..|+..+..... ..++|++||+||+|+...+ +..++
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~ 179 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDA 179 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHH
Confidence 99999999999999999999999999999999876431 1358999999999996531 35788
Q ss_pred HHHHHHHcCC
Q psy11135 130 AQELAEQFNI 139 (191)
Q Consensus 130 ~~~~~~~~~~ 139 (191)
+++++++.++
T Consensus 180 a~~~A~~~g~ 189 (334)
T PLN00023 180 ARQWVEKQGL 189 (334)
T ss_pred HHHHHHHcCC
Confidence 9999999884
No 125
>KOG4252|consensus
Probab=99.95 E-value=4.8e-28 Score=157.35 Aligned_cols=165 Identities=30% Similarity=0.464 Sum_probs=145.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
-+|++++|..++||||+|++++.+-+..++..+.+..+ .....++...+.+.+||++|+++++.+...+++++.+.++|
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV 99 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV 99 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence 37999999999999999999999999888888777433 33344566666678999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|+-+|..||+...+|.+.+.... ..+|.++|-||+|+.+ ..+...+++.+++.+...++-+|++...|+...|..|+
T Consensus 100 FSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 100 FSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA 177 (246)
T ss_pred EecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999999999997743 4789999999999987 67788999999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
..+.....+
T Consensus 178 eK~~q~~kq 186 (246)
T KOG4252|consen 178 EKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHH
Confidence 998776555
No 126
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.1e-25 Score=152.82 Aligned_cols=143 Identities=27% Similarity=0.441 Sum_probs=122.8
Q ss_pred CCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy11135 27 HFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD 105 (191)
Q Consensus 27 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 105 (191)
.+...+.+|.+ +.....+.+++..+.+.+|||||++++...+..+++++|++++|||++++++++.+..|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~- 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER- 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-
Confidence 45567777877 4444556788889999999999999999999999999999999999999999999999998887643
Q ss_pred CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhhhhh
Q psy11135 106 AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170 (191)
Q Consensus 106 ~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~~ 170 (191)
.+..|+++|+||+|+.. ..+..+++..++..+++.++++||++|.|++++|++|.+.+.+.....
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~~ 148 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNSN 148 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccccC
Confidence 35689999999999965 567888888899999999999999999999999999999997755443
No 127
>KOG0073|consensus
Probab=99.95 E-value=1.6e-25 Score=143.52 Aligned_cols=160 Identities=19% Similarity=0.335 Sum_probs=127.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++++|+++|..|+||||+++++.+.. .....|+.+-... +. ....+++.+||.+|+...+..|+.||+..|++++|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ik-tl--~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIK-TL--EYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeE-EE--EecceEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 38999999999999999999998776 2333344443322 23 33445589999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH------HHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ------AQELAEQFNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~v~~l 155 (191)
+|.+++..+++....++.+.......+.|+++++||.|+.. .+..++ ...+++...++++.||+.+|+++.+.
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~-~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG-ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc-ccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 99999998888877777766544556789999999999974 223232 34566777899999999999999999
Q ss_pred HHHHHHHHHhh
Q psy11135 156 FYTLVREIKKD 166 (191)
Q Consensus 156 ~~~i~~~~~~~ 166 (191)
++|+.+.+.+.
T Consensus 170 idWL~~~l~~r 180 (185)
T KOG0073|consen 170 IDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999998873
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=7.2e-26 Score=153.45 Aligned_cols=157 Identities=22% Similarity=0.215 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHHHH---hhcccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAMRD---QYMRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~---~~~~~~~ 76 (191)
+|+++|.+|||||||++++.+.... .....++..........++. ..+.+|||||+.+ ...... ..+..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999876532 22222322222222333333 3588999999632 111122 2245699
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHH-cCCCEEEeccCCCCCHH
Q psy11135 77 GFLLVFAVNSM-KSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~ 153 (191)
++++|+|++++ +++..+..|...+..... ....|+++|+||+|+.+.....+....+... .+.+++++|++++.|++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 160 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLD 160 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHH
Confidence 99999999998 788888888888766432 2468999999999997644444555556666 37889999999999999
Q ss_pred HHHHHHHHH
Q psy11135 154 DAFYTLVRE 162 (191)
Q Consensus 154 ~l~~~i~~~ 162 (191)
++|++|.+.
T Consensus 161 ~l~~~i~~~ 169 (170)
T cd01898 161 ELLRKLAEL 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998764
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=1.2e-25 Score=153.64 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCCc------cceE---EEEEEE---cCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-------FVDEYDPTI------EDSY---RKQVVI---DGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~---~~~~~~---~~~~~~~~~~D~~g~~~~~ 65 (191)
+|+++|++++|||||++++.+.. +...+.++. +... .....+ ++..+.+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998743 111121111 1111 111112 5667789999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC---EE
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP---FI 142 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 142 (191)
..+..++..+|++++|||+++..+......|.... ..+.|+++|+||+|+.... ..+...++++.++++ ++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSAD-PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCC-HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876555555443222 1367999999999986422 233345667777764 89
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q psy11135 143 KTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~ 163 (191)
++||++|.|+++++++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998765
No 130
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=1.9e-25 Score=151.85 Aligned_cols=152 Identities=26% Similarity=0.384 Sum_probs=116.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|++|||||||++++.+..+.. ..++.+... .....++ ..+.+||+||+..+...+..+++.+++++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 46899999999999999999999876532 333333221 2233444 4588999999998888888889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC--------CEEEeccCCCCCHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI--------PFIKTSAKTRMGVD 153 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~~~v~ 153 (191)
+|+++..++.....++..+.......+.|+++++||+|+.... . ..++.+.+++ +++++||++|.|++
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~---~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-P---AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-C---HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 9999998888888887777654444578999999999986422 2 2233333332 47899999999999
Q ss_pred HHHHHHHH
Q psy11135 154 DAFYTLVR 161 (191)
Q Consensus 154 ~l~~~i~~ 161 (191)
++|++|.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999865
No 131
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2.3e-25 Score=164.30 Aligned_cols=160 Identities=21% Similarity=0.213 Sum_probs=119.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhh-------HHHHHHhhcccC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEE-------YSAMRDQYMRTG 75 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 75 (191)
.|+++|.|+||||||++++.+.. ....++.|+.......+.+ ++.. +.+||+||..+ ........++.+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 47899999999999999999755 3455655655444444444 3334 78999999643 222222345679
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
+++++|+|+++.++++.+..|...+..+.. ..+.|+++|+||+|+.... ...+..+.+++..+.+++++||++++|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 999999999988888888899888876543 2468999999999987533 33334555556667899999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy11135 154 DAFYTLVREIKKD 166 (191)
Q Consensus 154 ~l~~~i~~~~~~~ 166 (191)
+++++|.+.+.+.
T Consensus 318 eL~~~L~~~l~~~ 330 (335)
T PRK12299 318 ELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=5.3e-25 Score=147.11 Aligned_cols=157 Identities=37% Similarity=0.535 Sum_probs=121.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++||+++|.+|+|||||++++.+......+.+++.... ......++..+.+.+||+||+.++...+..+...+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998886666655555333 33345666667799999999999998888889999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 82 FAVNSM-KSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
+|+... .++.... .+...+...... +.|+++++||+|+............+......+++++|+.++.|+++++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 5555554 666666554433 7899999999999775544444445555556789999999999999999986
Q ss_pred H
Q psy11135 160 V 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.4e-25 Score=149.87 Aligned_cols=154 Identities=24% Similarity=0.239 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChhhH---------HHHHHhhccc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY---------SAMRDQYMRT 74 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~ 74 (191)
+|+++|.+|+|||||++++.+..+.. .++.++........ +.....+.+|||||+... ..........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 68999999999999999999887532 22222222222222 223456899999997320 0111111223
Q ss_pred CCEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 75 GEGFLLVFAVNSMKS--FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
+|++++|+|+++..+ .+....|+..+.... .+.|+++|+||+|+...... .+..++.+..+.+++++||+++.|+
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDL-SEIEEEEELEGEEVLKISTLTEEGV 156 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhH-HHHHHhhhhccCceEEEEecccCCH
Confidence 689999999998654 355556666665432 47899999999999653221 1245555656789999999999999
Q ss_pred HHHHHHHHHHH
Q psy11135 153 DDAFYTLVREI 163 (191)
Q Consensus 153 ~~l~~~i~~~~ 163 (191)
+++++++.+.+
T Consensus 157 ~~l~~~l~~~~ 167 (168)
T cd01897 157 DEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 134
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.94 E-value=8.3e-26 Score=148.32 Aligned_cols=147 Identities=21% Similarity=0.286 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh------HHHHHHhh--ccc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE------YSAMRDQY--MRT 74 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~--~~~ 74 (191)
++|+++|.|+||||||+|+|++.. ...++++++.+.....+...+.. +.++|+||... .......+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 589999999999999999999988 44667777777766777777755 78899999432 12233333 357
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 154 (191)
.|+++++.|+++.+. -..+..++... +.|+++|+||+|+..+.-..-+...+++.+|+|++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r---~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLER---NLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHH---HHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHH---HHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999988543 22344444442 68999999999987633333346778888999999999999999999
Q ss_pred HHHHH
Q psy11135 155 AFYTL 159 (191)
Q Consensus 155 l~~~i 159 (191)
++++|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 99875
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=1.6e-25 Score=147.50 Aligned_cols=134 Identities=25% Similarity=0.302 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh-----hHHHHHHhhcccCCEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-----EYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~i 79 (191)
||+++|++|||||||++++.+.... +.++.. ..+. -.+|||||.. .+..... .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEc-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999877642 222211 1111 1579999973 2333333 488999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||++++.++.. ..|... . ..|+++|+||+|+.+.....++..++++..+. +++++||+++.|++++|++
T Consensus 68 lv~d~~~~~s~~~-~~~~~~----~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 139 (142)
T TIGR02528 68 LVQSATDPESRFP-PGFASI----F---VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY 139 (142)
T ss_pred EEecCCCCCcCCC-hhHHHh----c---cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 9999999887644 233221 1 23999999999997655566777788887776 8999999999999999998
Q ss_pred HH
Q psy11135 159 LV 160 (191)
Q Consensus 159 i~ 160 (191)
+.
T Consensus 140 l~ 141 (142)
T TIGR02528 140 LN 141 (142)
T ss_pred Hh
Confidence 74
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.94 E-value=4.4e-24 Score=150.40 Aligned_cols=168 Identities=33% Similarity=0.492 Sum_probs=129.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEE-EEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
|..+||+++|+.|||||||++++.+..+...+.++....+... ....+..+.+.+|||+|+++++..+..++..+++++
T Consensus 3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l 82 (219)
T COG1100 3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL 82 (219)
T ss_pred cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999999999988888866444333 333444778999999999999999999999999999
Q ss_pred EEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-------------CHHHHHHHHHHc---CCCEE
Q psy11135 80 LVFAVNS-MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-------------DMNQAQELAEQF---NIPFI 142 (191)
Q Consensus 80 ~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~~~~~~~~~---~~~~~ 142 (191)
++||.++ ..+.+....|...+..... ...|+++|+||+|+..... ............ ...++
T Consensus 83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (219)
T COG1100 83 IVYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALL 161 (219)
T ss_pred EEEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccccee
Confidence 9999999 4455556677777766432 5689999999999977421 122222222222 33489
Q ss_pred EeccC--CCCCHHHHHHHHHHHHHhhhhh
Q psy11135 143 KTSAK--TRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 143 ~~s~~--~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
++|++ .+.++.++|..+...+......
T Consensus 162 ~~s~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 162 ETSAKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred EeecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 99999 9999999999999998754433
No 137
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=4.6e-24 Score=141.50 Aligned_cols=153 Identities=40% Similarity=0.670 Sum_probs=121.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC
Q psy11135 8 VVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS 86 (191)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (191)
++|++|+|||||++++.+... .....++.................+.+||+||+..+.......+..++++++++|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 579999999999999998886 4444444444445555555667789999999999888888888999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH--HHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 87 MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ--AQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 87 ~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
+.+......|+..........+.|+++|+||+|+......... ..........+++++|+.++.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9998888887444444445668999999999998764433333 3455566678999999999999999999875
No 138
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.4e-24 Score=157.00 Aligned_cols=156 Identities=16% Similarity=0.083 Sum_probs=110.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH--------HHHHHhhccc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY--------SAMRDQYMRT 74 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~ 74 (191)
+|+++|.+|||||||+|+|.+... .+..+.|+..........++ ..+.+|||||..+. .......+..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999999874 34445555544433333333 34889999997542 1123455789
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHH
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVD 153 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 153 (191)
+|++++++|+++..+.. ..++..+.. .+.|+++|+||+|+.......+....+....+. +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999866553 333333322 368999999999986533223344455555554 79999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy11135 154 DAFYTLVREIKKDKM 168 (191)
Q Consensus 154 ~l~~~i~~~~~~~~~ 168 (191)
+++++|.+.+.+...
T Consensus 154 ~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 154 FLAAFIEVHLPEGPF 168 (270)
T ss_pred HHHHHHHHhCCCCCC
Confidence 999999998866443
No 139
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=2.3e-24 Score=150.21 Aligned_cols=153 Identities=22% Similarity=0.197 Sum_probs=107.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HHHHHHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YSAMRDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 72 (191)
.++|+++|++|||||||++++.+.... .....++.........+++. ..+.+|||||..+ +.... ..+
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~ 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EEV 118 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HHH
Confidence 369999999999999999999988732 22222222222233334443 2588999999732 22222 235
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..+|++++++|++++.+......|...+... ...+.|+++|+||+|+...... .......+.+++++|++++.|+
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~----~~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEEL----EERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHH----HHHhhcCCCceEEEEcCCCCCH
Confidence 6899999999999988877766666655443 3346899999999998653211 1344555678999999999999
Q ss_pred HHHHHHHHHH
Q psy11135 153 DDAFYTLVRE 162 (191)
Q Consensus 153 ~~l~~~i~~~ 162 (191)
++++++|.+.
T Consensus 194 ~~l~~~L~~~ 203 (204)
T cd01878 194 DELLEAIEEL 203 (204)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=3.2e-24 Score=158.12 Aligned_cols=158 Identities=23% Similarity=0.271 Sum_probs=116.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH----HHHHh---hcccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS----AMRDQ---YMRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~~ 76 (191)
.|+++|.++||||||++++.+.. ....++.|+.........+++ ...+.+||+||..+.. .+... .+..++
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 58899999999999999999765 344555555444344444444 2347899999975321 22222 345799
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 77 GFLLVFAVNSM---KSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 77 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
++++|+|+++. +.++.+..|..++..+.. ..+.|+++|+||+|+.......+..+.+++..+.+++++||++++|+
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI 317 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGL 317 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCH
Confidence 99999999986 677778888877766532 24689999999999976433344456667777889999999999999
Q ss_pred HHHHHHHHHHH
Q psy11135 153 DDAFYTLVREI 163 (191)
Q Consensus 153 ~~l~~~i~~~~ 163 (191)
++++++|.+.+
T Consensus 318 ~eL~~~I~~~l 328 (329)
T TIGR02729 318 DELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=4.5e-24 Score=143.73 Aligned_cols=149 Identities=19% Similarity=0.123 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCccCC-ccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH---FVDEYDPT-IEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
.|+++|++|||||||++++.+.. +...+.+. +.+.......+.+ ...+.+|||||++++......++..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999998643 22222221 1121122233331 3458999999999887777777889999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHH---cCCCEEEeccCCCCC
Q psy11135 81 VFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQ---FNIPFIKTSAKTRMG 151 (191)
Q Consensus 81 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~---~~~~~~~~s~~~~~~ 151 (191)
|+|+++ +++.+.+ ..+.. . ...|+++|+||+|+.... ...++..+..+. .+.+++++|++++.|
T Consensus 81 V~d~~~~~~~~~~~~~----~~~~~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 81 VVAADEGIMPQTREHL----EILEL-L--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEECCCCccHhHHHHH----HHHHH-h--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 999987 3333222 11211 1 124999999999987532 112233333333 357999999999999
Q ss_pred HHHHHHHHHH
Q psy11135 152 VDDAFYTLVR 161 (191)
Q Consensus 152 v~~l~~~i~~ 161 (191)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 142
>KOG0070|consensus
Probab=99.93 E-value=3e-25 Score=145.70 Aligned_cols=160 Identities=20% Similarity=0.307 Sum_probs=129.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++++|+++|-.++||||++.++...+.... .||.+-.... +.+. .+.+.+||..|+++++.+|++|+.+.+++|+|
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 588999999999999999999998887766 6676644433 3334 55589999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~ 156 (191)
+|.+|.+.+.+.+..+..+.........|+++.+||.|+.. ..+..+..+.... ....+-.++|.+|+|+.+.+
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~-als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG-ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc-cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHH
Confidence 99999999999988888887766667899999999999876 2233333322222 22456778999999999999
Q ss_pred HHHHHHHHhh
Q psy11135 157 YTLVREIKKD 166 (191)
Q Consensus 157 ~~i~~~~~~~ 166 (191)
+++.+.+...
T Consensus 171 ~wl~~~~~~~ 180 (181)
T KOG0070|consen 171 DWLSNNLKKR 180 (181)
T ss_pred HHHHHHHhcc
Confidence 9999887653
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=3.3e-24 Score=143.59 Aligned_cols=147 Identities=18% Similarity=0.221 Sum_probs=107.1
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH------HHHhhcc--cCCEE
Q psy11135 8 VVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA------MRDQYMR--TGEGF 78 (191)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--~~~~~ 78 (191)
++|.+|+|||||++++.+.... ..+..++.......+.+++. .+.+|||||+.++.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5799999999999999987633 33333444443444555654 588999999876442 3455554 89999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
++++|.++.++.. .+...+.. .+.|+++|+||+|+............+++.++.+++++|+.++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998865432 33333333 2689999999999976433334456777888999999999999999999999
Q ss_pred HHHHH
Q psy11135 159 LVREI 163 (191)
Q Consensus 159 i~~~~ 163 (191)
+.+.+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 88763
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.1e-24 Score=150.15 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=100.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC-----------hhhHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG-----------QEEYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 71 (191)
.++|+++|.+|+|||||++++.+..+.....+.+.. ........ .+.+||||| ++.+...+..+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTR-KPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceee-CceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 579999999999999999999987754433332221 11112222 478999999 45666655555
Q ss_pred cc----cCCEEEEEEeCCChhhHHHHHHH--------HHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC
Q psy11135 72 MR----TGEGFLLVFAVNSMKSFEDIGSY--------REQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI 139 (191)
Q Consensus 72 ~~----~~~~~i~v~d~~~~~s~~~~~~~--------~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 139 (191)
+. .++++++|+|.+....+. ..| ...+.......+.|+++|+||+|+.... .+...++++.++.
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~ 159 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR--DEVLDEIAERLGL 159 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH--HHHHHHHHHHhcC
Confidence 43 356777787775432110 111 0111111122478999999999986533 3455666666664
Q ss_pred ---------CEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 140 ---------PFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 140 ---------~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
+++++||++| |+++++++|.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 5899999999 999999999988754
No 145
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.92 E-value=2e-23 Score=159.38 Aligned_cols=150 Identities=23% Similarity=0.308 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH--------HHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM--------RDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 72 (191)
.++|+++|++|+|||||+|++++.. ....+++++.+.....+.+++.. +.+|||||..+.... ...++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 5799999999999999999999875 45677777666666666777655 689999998543321 23567
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
+.+|++++|||++++.+.+.. |+..+.. .+.|+++|+||+|+... +...+++.++.+++++|+++ .|+
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-----~~~~~~~~~~~~~~~vSak~-~gI 348 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-----SLEFFVSSKVLNSSNLSAKQ-LKI 348 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-----chhhhhhhcCCceEEEEEec-CCH
Confidence 899999999999998776654 5544432 36799999999998643 22445667788999999997 699
Q ss_pred HHHHHHHHHHHHhh
Q psy11135 153 DDAFYTLVREIKKD 166 (191)
Q Consensus 153 ~~l~~~i~~~~~~~ 166 (191)
+++++.+.+.+.+.
T Consensus 349 ~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 349 KALVDLLTQKINAF 362 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887653
No 146
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=2.7e-23 Score=138.83 Aligned_cols=145 Identities=28% Similarity=0.302 Sum_probs=105.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 73 (191)
++|+++|++|+|||||++++.+... .....+++..........++ ..+.+|||||..+... .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998763 23344444343333344444 3478899999654321 2334577
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
.+|++++++|++++.+......+.. ....|+++|+||+|+...... .....+.+++++|+.++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998776665543322 346899999999998763322 345556799999999999999
Q ss_pred HHHHHHHHHH
Q psy11135 154 DAFYTLVREI 163 (191)
Q Consensus 154 ~l~~~i~~~~ 163 (191)
+++++|...+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 147
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=5e-23 Score=153.10 Aligned_cols=151 Identities=22% Similarity=0.209 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChh---------hHHHHHHhhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE---------EYSAMRDQYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~ 73 (191)
++|+++|.+|+|||||+|++.+... ..+...++.+.......+++. ..+.+|||||.. .+...+. .+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATLE-EVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHHH-HHH
Confidence 7899999999999999999998773 344445555555555556432 258899999972 2333332 477
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
.+|++++|+|++++.+.+.+..|...+.. ....+.|+++|+||+|+... ....... ....+++++||+++.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~-l~~~~~piIlV~NK~Dl~~~----~~v~~~~-~~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEE-LGAEDIPQLLVYNKIDLLDE----PRIERLE-EGYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHH-hccCCCCEEEEEEeecCCCh----HhHHHHH-hCCCCEEEEEccCCCCHH
Confidence 89999999999998877776655554444 23346899999999998642 1222221 223468999999999999
Q ss_pred HHHHHHHHH
Q psy11135 154 DAFYTLVRE 162 (191)
Q Consensus 154 ~l~~~i~~~ 162 (191)
++++.|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999998764
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=9.2e-23 Score=137.91 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=104.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
.|+++|.+|+|||||++++....+.....+... .........+ +....+.+|||||+..+...+...+..+|++++++
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998876544332222 1111222222 13456889999999999888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHH----Hc--CCCEEEeccCCCCCHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAE----QF--NIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~----~~--~~~~~~~s~~~~~~v~~ 154 (191)
|+++...... ...+..+.. .+.|+++|+||+|+...... .+....+.. .+ .++++++|++++.|+++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 9987432111 112222222 46899999999998742211 111111111 11 36899999999999999
Q ss_pred HHHHHHHHHH
Q psy11135 155 AFYTLVREIK 164 (191)
Q Consensus 155 l~~~i~~~~~ 164 (191)
++++|.+...
T Consensus 157 l~~~l~~~~~ 166 (168)
T cd01887 157 LLEAILLLAE 166 (168)
T ss_pred HHHHHHHhhh
Confidence 9999887653
No 149
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=3.2e-23 Score=153.87 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=108.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-H-------HHHHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-S-------AMRDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~~~~ 72 (191)
.++|+++|.+|||||||++++.+..+. +....++..........++. .+.+|||||..+. . ......+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 569999999999999999999988753 23333444444444455554 4789999998532 1 1122347
Q ss_pred ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCC
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTR 149 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~ 149 (191)
..+|++++++|..+ ++.... .++..+.. .+.|.++|+||+|+... ...+..++....+ ..++++||++|
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iSAktg 201 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPISALSG 201 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 78999999999765 333443 33333333 24577899999998653 2344555555444 57999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q psy11135 150 MGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~~~~~ 169 (191)
.|+++++++|...+.+....
T Consensus 202 ~gv~eL~~~L~~~l~~~~~~ 221 (339)
T PRK15494 202 KNIDGLLEYITSKAKISPWL 221 (339)
T ss_pred cCHHHHHHHHHHhCCCCCCC
Confidence 99999999999988765433
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=5.7e-23 Score=159.03 Aligned_cols=156 Identities=26% Similarity=0.283 Sum_probs=112.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----------hhHHHHH-H
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------EEYSAMR-D 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~-~ 69 (191)
.++|+++|.+|||||||++++++... .....+++.+.....+..++.. +.+|||||. +.+.... .
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHH
Confidence 47999999999999999999998763 4555566666655666667766 578999995 2333332 2
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH---HHHH-HHHHHcCCCEEEec
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM---NQAQ-ELAEQFNIPFIKTS 145 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~-~~~~~~~~~~~~~s 145 (191)
.+++.+|++++|+|+++..+...+. ++..+.. .+.|+++|+||+|+....... ++.. .+.....++++++|
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 3578999999999999987766553 3333332 468999999999997522111 1111 12222347899999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy11135 146 AKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~ 165 (191)
|++|.|++++|+.+.+.+..
T Consensus 364 Ak~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 364 AKTGRAVDKLVPALETALES 383 (472)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887754
No 151
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.8e-22 Score=152.53 Aligned_cols=159 Identities=22% Similarity=0.278 Sum_probs=116.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhh----HHHHHHhh---cccC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEE----YSAMRDQY---MRTG 75 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~ 75 (191)
.|+++|.++||||||++++++... ...++.++.......+.++ +. .+.+||+||..+ ...+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~--~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGR--SFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCc--eEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 589999999999999999997662 3445555444333333343 33 488999999643 12233333 4568
Q ss_pred CEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135 76 EGFLLVFAVNSM---KSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151 (191)
Q Consensus 76 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 151 (191)
+++++|+|+++. +.++.+..|...+..+.. ..+.|.++|+||+|+.. ..+....+++.++.+++++||+++.|
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~---~~e~l~~l~~~l~~~i~~iSA~tgeG 314 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE---AEENLEEFKEKLGPKVFPISALTGQG 314 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC---CHHHHHHHHHHhCCcEEEEeCCCCCC
Confidence 999999999864 566777777777766542 24689999999999843 33456677777778999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy11135 152 VDDAFYTLVREIKKDKM 168 (191)
Q Consensus 152 v~~l~~~i~~~~~~~~~ 168 (191)
+++++++|.+.+.+.+.
T Consensus 315 I~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 315 LDELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999998876544
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=3.9e-23 Score=159.92 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 73 (191)
.+|+++|.+|||||||++++.+... ....++++.+.......+++.. +.+|||||++. +......++.
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 5899999999999999999998763 3334344444455555556655 78899999752 3344556788
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
.+|++++|+|+++..+... ..+...+.. .+.|+++|+||+|+.... .+....+....+ .++++||++|.|++
T Consensus 117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~--~~~~~~~~~g~~-~~~~iSA~~g~gi~ 188 (472)
T PRK03003 117 TADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE--ADAAALWSLGLG-EPHPVSALHGRGVG 188 (472)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc--hhhHHHHhcCCC-CeEEEEcCCCCCcH
Confidence 9999999999998655432 233333332 468999999999986422 122222222223 45799999999999
Q ss_pred HHHHHHHHHHHh
Q psy11135 154 DAFYTLVREIKK 165 (191)
Q Consensus 154 ~l~~~i~~~~~~ 165 (191)
+++++|.+.+.+
T Consensus 189 eL~~~i~~~l~~ 200 (472)
T PRK03003 189 DLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHhhccc
Confidence 999999988865
No 153
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=4.5e-23 Score=158.18 Aligned_cols=147 Identities=28% Similarity=0.328 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH--------HHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM--------RDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 72 (191)
.++|+++|.+|+|||||+|++.+.. ...+.++++.+.......+++.. +.+|||||..++... ....+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 5799999999999999999999876 35566666666666666666655 788999997653321 23457
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..+|++++|+|++++.+.+....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~-------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE-------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh-------hccCCceEEEEeeCCCCH
Confidence 88999999999999877665433322 3468999999999986522111 344578999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy11135 153 DDAFYTLVREIKK 165 (191)
Q Consensus 153 ~~l~~~i~~~~~~ 165 (191)
++++++|.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=3.1e-23 Score=141.23 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=105.3
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHH----H---HHHhhcccCCEE
Q psy11135 8 VVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYS----A---MRDQYMRTGEGF 78 (191)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~----~---~~~~~~~~~~~~ 78 (191)
++|++|||||||++++.+... ...+..++.........++ +.. +.+|||||..+.. . .....+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGAR--IQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCe--EEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 579999999999999998764 2333333333322333344 444 7899999964321 1 122346779999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHhhcC------CCCCcEEEEEecCCCCCCcc-CHHHHHHHHHHcCCCEEEec
Q psy11135 79 LLVFAVNSM------KSFEDIGSYREQIKRVKD------AEEVPMVLVGNKCDLSTWAV-DMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 79 i~v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~s 145 (191)
++++|+++. .++.....|...+..... ..+.|+++|+||+|+..... ............+.+++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 567777777776654332 14689999999999875222 11112234444567899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy11135 146 AKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~ 162 (191)
++++.|++++++++.+.
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999988754
No 155
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=1.5e-22 Score=139.27 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=107.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc---------------cceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVVIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
+|+++|.+|+|||||++++.+........... .+........+.....+.+|||||+.++...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 48999999999999999999887544332111 000011111222244588999999999888888
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHHHHHH----------
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQELAEQ---------- 136 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~---------- 136 (191)
.++..+|++++++|..+..+... ..++..+.. .+.|+++|+||+|+..... ..++.++....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 88999999999999987554322 223322222 4789999999999975221 12223333332
Q ss_pred ----cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 137 ----FNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 137 ----~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
...+++++|++++.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3468999999999999999999998864
No 156
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.8e-22 Score=154.45 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----HHH---HHhhcccC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----SAM---RDQYMRTG 75 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~---~~~~~~~~ 75 (191)
-.|+++|.|+||||||+++|.+.. ...+++.|+.......+...+. .+.+||+||..+. ..+ ....+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~--~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT--RFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe--EEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 368999999999999999999765 3355665655544444555554 4889999995321 111 12235679
Q ss_pred CEEEEEEeCCCh----hhHHHHHHHHHHHHhhc----------CCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCE
Q psy11135 76 EGFLLVFAVNSM----KSFEDIGSYREQIKRVK----------DAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPF 141 (191)
Q Consensus 76 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 141 (191)
+++++|+|+++. +.+..+..+..++..+. .....|.+||+||+|+.......+.........++++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV 317 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence 999999999763 34445555555555443 2346899999999998652222222333334557899
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 142 IKTSAKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 142 ~~~s~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
+++|++++.|+++++.+|.+.+...+.
T Consensus 318 f~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 318 FEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998876553
No 157
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=4.1e-23 Score=131.98 Aligned_cols=115 Identities=30% Similarity=0.542 Sum_probs=84.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
||+|+|++|||||||++++.+.... ....+..... .............+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998865 2222222222 223445566666689999999988887777779999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCC
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCD 119 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D 119 (191)
||+++++++..+..++..+.... ...+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999998865544443322 234599999999998
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=7.7e-23 Score=136.71 Aligned_cols=145 Identities=20% Similarity=0.220 Sum_probs=101.3
Q ss_pred EEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhcccCC
Q psy11135 7 VVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYMRTGE 76 (191)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 76 (191)
+++|.+|+|||||++++.+.. ......+++.+........++ ..+.+|||||..+... .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 478999999999999999775 334444444444444444454 4488999999876432 3345678899
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHH
Q psy11135 77 GFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDA 155 (191)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l 155 (191)
++++++|..+..+.... .+...+.. .+.|+++|+||+|+...... .......+. +++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443322 22222222 25899999999998763221 233344565 7899999999999999
Q ss_pred HHHHHHH
Q psy11135 156 FYTLVRE 162 (191)
Q Consensus 156 ~~~i~~~ 162 (191)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998865
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=1e-22 Score=140.63 Aligned_cols=158 Identities=20% Similarity=0.122 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC----CCCC----ccCCccceEEEEEEEc------------CeEEEEEEEeCCChhh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH----FVDE----YDPTIEDSYRKQVVID------------GETALLDILDTAGQEE 63 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~----~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~ 63 (191)
++|+++|++|+|||||++++.... +... ...++.........+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 1111 1111111111112222 3356789999999876
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHH-HHH----
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQE-LAE---- 135 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~-~~~---- 135 (191)
+..........+|++++|+|+++.........+. +... .+.|+++|+||+|+..... ..++..+ +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5444444456789999999998744333222221 1111 2569999999999874221 1122222 111
Q ss_pred --HcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 136 --QFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 136 --~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
..+++++++|++++.|+++++++|.+++...
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1357899999999999999999999887654
No 160
>KOG3883|consensus
Probab=99.91 E-value=3.2e-22 Score=127.06 Aligned_cols=164 Identities=30% Similarity=0.443 Sum_probs=140.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCe-EEEEEEEeCCChhhH-HHHHHhhcccCCEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGE-TALLDILDTAGQEEY-SAMRDQYMRTGEGF 78 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~-~~~~~~~~~~~~~~ 78 (191)
--||+|+|..++|||+++..+.-.+ ...++.+|..+.+......+.+ .=.+.++||+|.... ..+..+++.-+|++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF 88 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence 4689999999999999999998665 4456678888887777766544 335789999997766 67888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
++||+..+++||..+..+-..+.+......+|+++.+||+|..+ .++..+.++.+++.-.+..+++++.+.-.+-+-|.
T Consensus 89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~ 168 (198)
T KOG3883|consen 89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFT 168 (198)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHH
Confidence 99999999999999888777787777778899999999999976 67888899999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy11135 158 TLVREIKKD 166 (191)
Q Consensus 158 ~i~~~~~~~ 166 (191)
.+...+...
T Consensus 169 ~l~~rl~~p 177 (198)
T KOG3883|consen 169 YLASRLHQP 177 (198)
T ss_pred HHHHhccCC
Confidence 988888653
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=1.3e-22 Score=135.55 Aligned_cols=141 Identities=19% Similarity=0.209 Sum_probs=99.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh----hHHHHHHhhcccCCEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE----EYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~ 80 (191)
+|+++|.+|+|||||++++.+..... ..+ . ...+... .+|||||.. ++.......+..+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~-~-----~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT-Q-----AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccc-e-----EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987654211 111 1 1122222 269999962 222222234789999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC--CEEEeccCCCCCHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI--PFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~l~~~ 158 (191)
++|+++.++.. ..|+..+ ..+.|+++++||+|+.. ...+...++..+.+. |++++|++++.|++++|++
T Consensus 71 v~d~~~~~s~~--~~~~~~~-----~~~~~ii~v~nK~Dl~~--~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~ 141 (158)
T PRK15467 71 VHGANDPESRL--PAGLLDI-----GVSKRQIAVISKTDMPD--ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDY 141 (158)
T ss_pred EEeCCCccccc--CHHHHhc-----cCCCCeEEEEEccccCc--ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHH
Confidence 99999876542 2333222 13579999999999854 345566677777774 8999999999999999999
Q ss_pred HHHHHHhh
Q psy11135 159 LVREIKKD 166 (191)
Q Consensus 159 i~~~~~~~ 166 (191)
+.+.+.+.
T Consensus 142 l~~~~~~~ 149 (158)
T PRK15467 142 LASLTKQE 149 (158)
T ss_pred HHHhchhh
Confidence 98877553
No 162
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=1.3e-22 Score=140.32 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=98.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh--CCCCCCcc------------CCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ--NHFVDEYD------------PTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~--~~~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
+|+++|.+++|||||++++.. ..+...+. .+.+ +.......++...+.+.+|||||++++.....
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 789999999999999999997 33433220 0111 11112223444556789999999999999999
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHHH-------HcCCC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELAE-------QFNIP 140 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~-------~~~~~ 140 (191)
.+++.+|++++|+|+++.. ......++..... .+.|+++|+||+|+..... ..++..++.. ..+++
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 9999999999999998732 2222333333322 3689999999999865322 1233344432 33678
Q ss_pred EEEeccCCCCCHHHH
Q psy11135 141 FIKTSAKTRMGVDDA 155 (191)
Q Consensus 141 ~~~~s~~~~~~v~~l 155 (191)
++++|+++|.|+.++
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999776443
No 163
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.8e-22 Score=135.07 Aligned_cols=155 Identities=21% Similarity=0.170 Sum_probs=104.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE--YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AMRDQ 70 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 70 (191)
|...+|+++|++|+|||||++++.+...... ...++...... ........+.+|||||..... .....
T Consensus 1 ~~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 1 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 5688999999999999999999998764322 22222222222 233334558899999965322 23344
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKT 148 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~ 148 (191)
.+..+|++++++|.+++.+- ....+...+.. .+.|+++|+||+|+.. .....+....+....+ .+++++|+++
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGE-GDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHHhCCEEEEEEECCCccCc-hHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 57789999999999986211 11222222322 2579999999999974 2223333444555553 6899999999
Q ss_pred CCCHHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVRE 162 (191)
Q Consensus 149 ~~~v~~l~~~i~~~ 162 (191)
+.+++++++.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999998764
No 164
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=4.1e-22 Score=149.80 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=117.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~ 76 (191)
.|+++|.||||||||+|+|++.. ..+.++.|+.......+..++. ..+.++||||..+.. ......+..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 58999999999999999999766 4456666666555555555432 237899999975421 11123477899
Q ss_pred EEEEEEeCC---ChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCCC
Q psy11135 77 GFLLVFAVN---SMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRM 150 (191)
Q Consensus 77 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~ 150 (191)
++++++|++ +.+.++.+..|...+..+.. ..+.|.++|+||+|+.......+....+.+..+ .+++++||+++.
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL 319 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence 999999998 45566677777777766432 236799999999998753323344455555544 479999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy11135 151 GVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~~ 168 (191)
+++++++.|.+.+.+...
T Consensus 320 GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 320 GVKELCWDLMTFIEENPR 337 (390)
T ss_pred CHHHHHHHHHHHhhhCcc
Confidence 999999999999876543
No 165
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=4.6e-22 Score=138.13 Aligned_cols=118 Identities=17% Similarity=0.306 Sum_probs=88.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccC-CEEEEEEe
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG-EGFLLVFA 83 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~d 83 (191)
+|+++|++|||||+|++++....+...+.++............+....+.+||+||+.++...+..+++.+ +++++|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887766554443222221111113345689999999999998888889998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC
Q psy11135 84 VNSM-KSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 84 ~~~~-~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~ 122 (191)
..+. +++.....++..+.... ...+.|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9997 67777777766554322 235799999999999864
No 166
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=6.8e-23 Score=152.10 Aligned_cols=177 Identities=18% Similarity=0.162 Sum_probs=124.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH---------HHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY---------SAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~ 71 (191)
...|+++|.|+||||||+|+|.+.. +.+++++++.+.......+.+.. +.++||+|.+.. .......
T Consensus 3 ~~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 3 TPVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 3579999999999999999999887 67888899999888888888888 788999996632 2344566
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC-CCEEEeccCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN-IPFIKTSAKTRM 150 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~ 150 (191)
+..+|++++|+|....-+ ..++.+ ..+....+.|+++|+||+|-.. ..+...+|. .+| -.++++||.+|.
T Consensus 81 i~eADvilfvVD~~~Git--~~D~~i---a~~Lr~~~kpviLvvNK~D~~~---~e~~~~efy-slG~g~~~~ISA~Hg~ 151 (444)
T COG1160 81 IEEADVILFVVDGREGIT--PADEEI---AKILRRSKKPVILVVNKIDNLK---AEELAYEFY-SLGFGEPVPISAEHGR 151 (444)
T ss_pred HHhCCEEEEEEeCCCCCC--HHHHHH---HHHHHhcCCCEEEEEEcccCch---hhhhHHHHH-hcCCCCceEeehhhcc
Confidence 778999999999976222 112222 2222223689999999999652 222233333 445 489999999999
Q ss_pred CHHHHHHHHHHHHH-hhhhhhhh--hhhccccCCCccccceec
Q psy11135 151 GVDDAFYTLVREIK-KDKMLRGK--EKKKRGISGNKLKQCCVL 190 (191)
Q Consensus 151 ~v~~l~~~i~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~ 190 (191)
|+.+++++++..++ ........ +.-+-.+.+.++-|..++
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsL 194 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSL 194 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHH
Confidence 99999999999985 22222211 234455555555555443
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=4e-22 Score=153.37 Aligned_cols=156 Identities=24% Similarity=0.269 Sum_probs=109.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-----------HHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-----------MRD 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~ 69 (191)
.++|+++|.+|+|||||++++++.. ......+++.+........++.. +.+|||||..+... ...
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHHHH
Confidence 4899999999999999999999876 34555556665555555566654 78899999643211 122
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHHHHc----CCCEEEe
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELAEQF----NIPFIKT 144 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~----~~~~~~~ 144 (191)
..++.+|++++|+|+++..+..... ++..+. ..+.|+++|+||+|+.......++. ..+...+ +++++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 324 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR-IAGLIL----EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI 324 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence 4578899999999999876554432 222222 2368999999999997311111121 2222222 4789999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy11135 145 SAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~~~~ 165 (191)
||++|.|++++|+++...+..
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 168
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=9.4e-22 Score=133.43 Aligned_cols=154 Identities=25% Similarity=0.298 Sum_probs=103.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----------HH-HH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----------SA-MR 68 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~-~~ 68 (191)
+.++|+++|.+|+|||||++++.+.... ....+++..........++.. +.+|||||..+. .. ..
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHH
Confidence 3689999999999999999999987632 233333333333444455555 678999996432 11 11
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc--cCHHHHHHHHHHc----CCCEE
Q psy11135 69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA--VDMNQAQELAEQF----NIPFI 142 (191)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~----~~~~~ 142 (191)
...+..+|++++++|.+++.+.... .++.... ..+.|+++++||+|+.... ........+.+.+ +.+++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 2346789999999999987664433 2222222 2358999999999987632 1122223344444 36899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q psy11135 143 KTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~ 162 (191)
++|++++.|++++++++.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 169
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=3.4e-22 Score=146.41 Aligned_cols=159 Identities=20% Similarity=0.197 Sum_probs=108.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HHHHhh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AMRDQY 71 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~ 71 (191)
+.-.|+++|.+|||||||+|++.+.... +..+.++..........+ ...+.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4567999999999999999999988743 333334433333322222 3568899999965432 233445
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcC-CCEEEeccCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFN-IPFIKTSAKTR 149 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~s~~~~ 149 (191)
+..+|++++++|+++... ....++..... ..+.|+++|+||+|+.. .....+....+.+..+ .+++++||+++
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 778999999999988322 12222212111 23679999999999973 2333344455555444 57999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q psy11135 150 MGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~~~ 167 (191)
.|+++++++|...+.+..
T Consensus 157 ~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 157 DNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999886544
No 170
>KOG0075|consensus
Probab=99.89 E-value=1.1e-22 Score=128.33 Aligned_cols=155 Identities=21% Similarity=0.360 Sum_probs=127.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.++.+.++|-.++|||||++.+..+.+...-.|+.+-.... +..+.+.+.+||.||+..+.+.|+.|.+.+++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 36789999999999999999998877666655666644333 555666789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--------CCEEEeccCCCCCHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--------IPFIKTSAKTRMGVD 153 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~v~ 153 (191)
+|+.+++.+...++.+..+.......+.|++|.+||.|+.. ..+.. ++....| +-.|-+|+++..|++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~-AL~~~---~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG-ALSKI---ALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc-cccHH---HHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 99999999999999888888877788999999999999875 22222 2334444 236889999999999
Q ss_pred HHHHHHHHHH
Q psy11135 154 DAFYTLVREI 163 (191)
Q Consensus 154 ~l~~~i~~~~ 163 (191)
-+.+||++.-
T Consensus 172 ~~~~Wli~hs 181 (186)
T KOG0075|consen 172 ITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 171
>KOG0071|consensus
Probab=99.89 E-value=6.5e-22 Score=123.84 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=124.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++++|+.+|-.++||||++..+........ .||++-.... +..+.+.+.+||.+|++..+..|++|+....++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTvGFnvet---VtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNVET---VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc-ccccceeEEE---EEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 589999999999999999999987665443 3444433222 334455688999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~ 156 (191)
.|..+++..++.+..+-.+....+....|++|.+||.|+.. ....++++.+... ...-+.++++.++.++.+-|
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~-A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egl 170 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD-AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGL 170 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc-ccCHHHHHHHhccccccCCccEeeccccccchhHHHHH
Confidence 99999988888887777776655667899999999999876 3455555554332 23457889999999999999
Q ss_pred HHHHHHHH
Q psy11135 157 YTLVREIK 164 (191)
Q Consensus 157 ~~i~~~~~ 164 (191)
.+|.+.+.
T Consensus 171 swlsnn~~ 178 (180)
T KOG0071|consen 171 SWLSNNLK 178 (180)
T ss_pred HHHHhhcc
Confidence 99987654
No 172
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.7e-21 Score=148.05 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=107.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--HHHHH------Hhhccc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--YSAMR------DQYMRT 74 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~------~~~~~~ 74 (191)
.+|+++|.+|||||||+|+|.+... ..+...++.+.......+.+.. .+.+|||||..+ ....+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999998763 3334444444444444454431 367899999733 11212 233678
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC-EEEeccCCCCCHH
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVD 153 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~ 153 (191)
+|++++|+|++++.+...+..|...+.. ....+.|+++|+||+|+...... ... ....+.+ ++++||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~e-l~~~~~pvIiV~NKiDL~~~~~~--~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEE-IDAHEIPTLLVMNKIDMLDDFEP--RID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHH-hccCCCCEEEEEEcccCCCchhH--HHH--HHhcCCCceEEEeCCCCCCHH
Confidence 9999999999998877776555444433 23346899999999998642111 111 1224555 5889999999999
Q ss_pred HHHHHHHHHHHh
Q psy11135 154 DAFYTLVREIKK 165 (191)
Q Consensus 154 ~l~~~i~~~~~~ 165 (191)
+++++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999998854
No 173
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.6e-21 Score=153.78 Aligned_cols=156 Identities=21% Similarity=0.313 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCCc------cceE---EEEEEE---cCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-------FVDEYDPTI------EDSY---RKQVVI---DGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-------~~~~~~~~~------~~~~---~~~~~~---~~~~~~~~~~D~~g~~~~~ 65 (191)
+|+++|+.++|||||+++++... +...+..+. +..+ .....+ ++..+.+.+|||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 68999999999999999998653 111111110 1111 111222 4666889999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---CEE
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---PFI 142 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~ 142 (191)
..+..+++.+|++++|+|+++..+......|..... .+.|+++|+||+|+.... ..+...++.+.++. .++
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~-~~~~~~el~~~lg~~~~~vi 158 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD-PERVKKEIEEVIGLDASEAI 158 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC-HHHHHHHHHHHhCCCcceEE
Confidence 999999999999999999998666555555543332 367999999999986422 22334566666675 389
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++||++|.|+++++++|.+.+...
T Consensus 159 ~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 159 LASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred EeeccCCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999887543
No 174
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=8.9e-22 Score=139.01 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=115.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AMRDQ 70 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~ 70 (191)
|+.--|+++|.|++|||||+|++.+.+ ..++.+.|+........+.+ ..++.++||||.++.. .....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 355678999999999999999999998 45666666666666655555 4458899999966432 34445
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcC-CCEEEeccCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFN-IPFIKTSAKT 148 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~-~~~~~~s~~~ 148 (191)
.+..+|+++++.|++++.. ....+.-.... ..+.|+++++||+|............++.. ... ..++++||++
T Consensus 82 sl~dvDlilfvvd~~~~~~--~~d~~il~~lk---~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 82 ALKDVDLILFVVDADEGWG--PGDEFILEQLK---KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HhccCcEEEEEEeccccCC--ccHHHHHHHHh---hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 5788999999999988433 22333322222 135799999999998774432223333333 333 3799999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhh
Q psy11135 149 RMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~~~~~ 169 (191)
+.|++.+.+.+...+++....
T Consensus 157 g~n~~~L~~~i~~~Lpeg~~~ 177 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEGPWY 177 (298)
T ss_pred cCCHHHHHHHHHHhCCCCCCc
Confidence 999999999999999875443
No 175
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=3.6e-22 Score=153.61 Aligned_cols=150 Identities=20% Similarity=0.241 Sum_probs=109.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh--------hhHHHHHHhhccc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ--------EEYSAMRDQYMRT 74 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~ 74 (191)
+|+++|.+|||||||+|++.+.. ......+++.+.......+++.. +.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876 34555566666656666666665 889999996 3344556667889
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHH
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVD 153 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 153 (191)
+|++++|+|..+..+... ..+...+.. .+.|+++|+||+|+....... .+ ...++. +++++||.+|.|++
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~~---~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAVA---AE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCcccccH---HH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999999987433221 122222222 367999999999987633222 22 235565 79999999999999
Q ss_pred HHHHHHHHHHHh
Q psy11135 154 DAFYTLVREIKK 165 (191)
Q Consensus 154 ~l~~~i~~~~~~ 165 (191)
++++++.+.+.+
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999888755
No 176
>KOG1673|consensus
Probab=99.89 E-value=2.5e-22 Score=127.83 Aligned_cols=162 Identities=23% Similarity=0.373 Sum_probs=136.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
.++||.++|++..|||||+-.+.+.+....+..+.+ ......+.+.+..+.+.+||..|++++....+..-..+-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 378999999999999999999999987666666666 4556677889999999999999999999999988889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC------CccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST------WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 154 (191)
+||++.++++..+..|+++.+..+.. .--++|+||.|+-- .+-...+++.+++..+++.+++|+.++.|+..
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~Nkt--AiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKT--AIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCc--cceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 99999999999999999999886543 23478999999743 11223456778888999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy11135 155 AFYTLVREIKK 165 (191)
Q Consensus 155 l~~~i~~~~~~ 165 (191)
+|..++..+..
T Consensus 177 IFK~vlAklFn 187 (205)
T KOG1673|consen 177 IFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHhC
Confidence 99988877653
No 177
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=1.3e-21 Score=136.07 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC---CCCcc--CCccceEEE-EE-----------------------EEc--C----
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF---VDEYD--PTIEDSYRK-QV-----------------------VID--G---- 48 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~---~~~~~--~~~~~~~~~-~~-----------------------~~~--~---- 48 (191)
++|+++|+.|+|||||+.++.+... ..... .+....+.. .. .+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 10000 000000000 00 000 1
Q ss_pred eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--
Q psy11135 49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD-- 126 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-- 126 (191)
....+.+|||||++++.......+..+|++++|+|++++.........+..+... ...|+++|+||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 1156899999999988887777788899999999998732111112222222221 12479999999998752211
Q ss_pred -HHHHHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 127 -MNQAQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 127 -~~~~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.++.+++...+ +++++++||++++|+++++++|.+.+.+
T Consensus 158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 12233333332 5789999999999999999999877654
No 178
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.89 E-value=2.3e-21 Score=156.28 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=113.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH----------HHH
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA----------MRD 69 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~ 69 (191)
|+.++|+++|++|||||||+|++.+... ..+.+.++.+...... +.....+.+|||||..++.. ...
T Consensus 1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~--~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 1 MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQF--STTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEE--EcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 6889999999999999999999998763 3444444444433333 33444588999999765432 112
Q ss_pred hh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135 70 QY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK 147 (191)
Q Consensus 70 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 147 (191)
.+ ...+|++++|+|.++.+.. ..+..++.+ .+.|+++|+||+|+.+......+.+.+.+.+|++++++|+.
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVST 151 (772)
T ss_pred HHHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEee
Confidence 23 3478999999999886542 234444433 36899999999998754434456778889999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy11135 148 TRMGVDDAFYTLVREI 163 (191)
Q Consensus 148 ~~~~v~~l~~~i~~~~ 163 (191)
+++|++++.+.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999988765
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.4e-21 Score=150.57 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 73 (191)
.+|+++|.+|||||||++++.+.. .....++++.+.......+++ ..+.+|||||+.. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999876 345555555555555566666 4589999999876 2333455678
Q ss_pred cCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135 74 TGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRM 150 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 150 (191)
.+|++++|+|..+..+.. .+..|+. . .+.|+++|+||+|.... .+...++ ..+++ .++++||.+|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~----~~~piilv~NK~D~~~~---~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K----SNKPVILVVNKVDGPDE---EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H----cCCcEEEEEECccCccc---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753322 2223322 2 26899999999996542 2223333 34565 48999999999
Q ss_pred CHHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVREI 163 (191)
Q Consensus 151 ~v~~l~~~i~~~~ 163 (191)
|++++++.+....
T Consensus 149 gv~~l~~~I~~~~ 161 (435)
T PRK00093 149 GIGDLLDAILEEL 161 (435)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998743
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=4.1e-21 Score=133.07 Aligned_cols=156 Identities=18% Similarity=0.225 Sum_probs=99.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----------hhHHHHHHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------EEYSAMRDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~ 72 (191)
..+|+++|.+|+|||||++++.+..+.....++.+..........+ ..+.+|||||. .++......++
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 3689999999999999999999876433333333322222211112 45889999994 34444555555
Q ss_pred ccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHHHHHHHcCCCEEEecc
Q psy11135 73 RTG---EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQELAEQFNIPFIKTSA 146 (191)
Q Consensus 73 ~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~s~ 146 (191)
..+ +++++++|.+++...... .+...+. ..+.|+++++||+|+...... .+...........+++++|+
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa 176 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKELDL-QMIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSS 176 (196)
T ss_pred HhCccceEEEEEEecCCCCCHHHH-HHHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 543 577788888775432221 1111121 236799999999998652211 12233333333678999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy11135 147 KTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 147 ~~~~~v~~l~~~i~~~~~~ 165 (191)
+++.|++++++.|...+.+
T Consensus 177 ~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 177 LKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999998876643
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=9.4e-21 Score=145.96 Aligned_cols=156 Identities=25% Similarity=0.289 Sum_probs=107.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----------HHH-HHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----------YSA-MRD 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~-~~~ 69 (191)
.++|+++|.+|+|||||++++++.. ......+++.+........++.. +.+|||||..+ +.. ...
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 5899999999999999999999776 34445555555554545555555 67899999532 111 122
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH----cCCCEEEec
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ----FNIPFIKTS 145 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~~s 145 (191)
..+..+|++++|+|++++.+.... .++..+. ..+.|+++|+||+|+.......+....+... ..++++++|
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~----~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S 325 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLAL----EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS 325 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence 357789999999999986554433 2222222 2368999999999987422111222222222 247999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy11135 146 AKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~ 165 (191)
|+++.|++++++.+.+....
T Consensus 326 A~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 326 ALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999998876653
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=5.9e-21 Score=149.96 Aligned_cols=152 Identities=19% Similarity=0.253 Sum_probs=106.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+..+|+++|+.++|||||++++.+..+.....+... ......+.+++.. .+.+|||||++.+..++...+..+|++++
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 356899999999999999999998776554433222 2222233343331 47899999999999999888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-------HcC--CCEEEeccCCCCC
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-------QFN--IPFIKTSAKTRMG 151 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~~~--~~~~~~s~~~~~~ 151 (191)
|+|+++......... +.. ....+.|+++++||+|+... ..+....... .++ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~-i~~----~~~~~vPiIVviNKiDl~~~--~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-ISH----AKAANVPIIVAINKIDKPEA--NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHH-HHH----HHHcCCCEEEEEECcccccC--CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999987432222211 111 22346899999999998642 2233333322 232 4799999999999
Q ss_pred HHHHHHHHHH
Q psy11135 152 VDDAFYTLVR 161 (191)
Q Consensus 152 v~~l~~~i~~ 161 (191)
+++++++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999999864
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1e-20 Score=152.77 Aligned_cols=155 Identities=26% Similarity=0.273 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh----------hHHHHH-H
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE----------EYSAMR-D 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~-~ 69 (191)
..+|+++|.+|||||||++++.+.. ....+.+++.+.......+++.. +.+|||||.. .+.... .
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHH
Confidence 3799999999999999999999887 35666777776666666677776 5689999953 122222 2
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HHHHHc----CCCEEEe
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-ELAEQF----NIPFIKT 144 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~----~~~~~~~ 144 (191)
..+..+|++++|+|+++..+..... ++..+.. .+.|+++|+||+|+.+... .+... .+...+ ..+++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~-~~~~~~~~~~~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR-RQRLERLWKTEFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH-HHHHHHHHHHhccCCCCCCEEEE
Confidence 3478899999999999877666553 3333322 3689999999999975221 12222 222222 2578999
Q ss_pred ccCCCCCHHHHHHHHHHHHHh
Q psy11135 145 SAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~~~~ 165 (191)
||++|.|++++++.+.+.+..
T Consensus 602 SAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 184
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=1.1e-20 Score=129.97 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-------------------cCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-------------------DPTIEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
-.+|+++|+.++|||||+.+|......... ...+..........+.....+.++|+||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 478999999999999999999865522111 0000111122222124445589999999999
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHHc--
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQF-- 137 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~-- 137 (191)
+.......+..+|++++|+|+.+.-... ....+..+.. .+.|+++|+||+|+...+ ..+... .+.+..
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHH-HHHHHHHHHHHHHHHTTS
T ss_pred eeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhh-HHHHHHHHHHHhcccccc
Confidence 8888888899999999999998753322 2233333333 367999999999987311 112222 233333
Q ss_pred ----CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 138 ----NIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 138 ----~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
.++++++|+.+|.|++++++.|.+.++
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 247999999999999999999988764
No 185
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=6.9e-21 Score=130.08 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=90.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcCeEEEEEEEeCCChh----------hHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETALLDILDTAGQE----------EYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~ 71 (191)
..+|+++|.+|+|||||++++.+..+.....++.+..... .+..++ .+.+|||||.. .+......+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 5799999999999999999999876322222222222111 122232 47899999942 344444445
Q ss_pred ccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHHHHHHcC--CCEEE
Q psy11135 72 MRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQELAEQFN--IPFIK 143 (191)
Q Consensus 72 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~--~~~~~ 143 (191)
++. ++++++++|.+++-+.... .++..+. ..+.|+++++||+|+..... ..++.+......+ .++++
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDL-EMLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 543 5799999999875443333 2222222 23689999999999865221 2233334444443 48999
Q ss_pred eccCCCCCHH
Q psy11135 144 TSAKTRMGVD 153 (191)
Q Consensus 144 ~s~~~~~~v~ 153 (191)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999974
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=1.1e-20 Score=150.57 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=108.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc---ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE---DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
...|+++|+.++|||||+++|....+.....+... ..+...+..++....+.||||||+..+..++..++..+|+++
T Consensus 244 ~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaI 323 (742)
T CHL00189 244 PPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAI 323 (742)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEE
Confidence 45899999999999999999988775443322221 122222333444567899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HH------HHHcC--CCEEEeccCCCC
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-EL------AEQFN--IPFIKTSAKTRM 150 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~------~~~~~--~~~~~~s~~~~~ 150 (191)
+|+|+++......... +..+ ...+.|+++++||+|+.... .+... ++ ...++ ++++++||++|.
T Consensus 324 LVVDA~dGv~~QT~E~-I~~~----k~~~iPiIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~ 396 (742)
T CHL00189 324 LIIAADDGVKPQTIEA-INYI----QAANVPIIVAINKIDKANAN--TERIKQQLAKYNLIPEKWGGDTPMIPISASQGT 396 (742)
T ss_pred EEEECcCCCChhhHHH-HHHH----HhcCceEEEEEECCCccccC--HHHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence 9999987432222211 1112 23468999999999987532 12211 11 23344 689999999999
Q ss_pred CHHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVREI 163 (191)
Q Consensus 151 ~v~~l~~~i~~~~ 163 (191)
|+++++++|....
T Consensus 397 GIdeLle~I~~l~ 409 (742)
T CHL00189 397 NIDKLLETILLLA 409 (742)
T ss_pred CHHHHHHhhhhhh
Confidence 9999999987764
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=2.9e-21 Score=155.94 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 73 (191)
.+|+++|.+|||||||+|++++.. .....++++.+.......+++.. +.+|||||... +......++.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 579999999999999999999875 33444444444444444455554 78899999653 3344556788
Q ss_pred cCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCC
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMG 151 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 151 (191)
.+|++++|+|.++.-. ... .+...+. ..+.|+++|+||+|+.... ....++.. .+. ..+++||++|.|
T Consensus 354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~---~~~~~~~~-lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 354 LADAVVFVVDGQVGLT--STDERIVRMLR----RAGKPVVLAVNKIDDQASE---YDAAEFWK-LGLGEPYPISAMHGRG 423 (712)
T ss_pred hCCEEEEEEECCCCCC--HHHHHHHHHHH----hcCCCEEEEEECcccccch---hhHHHHHH-cCCCCeEEEECCCCCC
Confidence 9999999999976322 222 2333333 2478999999999986421 12222222 232 467999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11135 152 VDDAFYTLVREIKK 165 (191)
Q Consensus 152 v~~l~~~i~~~~~~ 165 (191)
+++++++|.+.+.+
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999998855
No 188
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.87 E-value=5.7e-21 Score=150.70 Aligned_cols=145 Identities=20% Similarity=0.263 Sum_probs=105.9
Q ss_pred cCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH------HHhhc--ccCCEEEE
Q psy11135 10 GAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM------RDQYM--RTGEGFLL 80 (191)
Q Consensus 10 G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~ 80 (191)
|++|||||||+|++.+... ..++++++.+........++.. +.+|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998774 3444444444444455555554 789999998765432 23332 36899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|+|.++.+.. ..+..++.+ .+.|+++|+||+|+.+......+.+.+++..+++++++|+++|.|++++++++.
T Consensus 79 VvDat~ler~---l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999885432 222233322 368999999999986533333456788889999999999999999999999998
Q ss_pred HHH
Q psy11135 161 REI 163 (191)
Q Consensus 161 ~~~ 163 (191)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 764
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.8e-20 Score=147.68 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=108.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC---CCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+.|+++|+.++|||||+++|.+.. +..++.+... +.....+..++ ..+.+||+||++++.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999998643 2222222222 22222234444 56899999999999888888889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCc---cCHHHHHHHHHHc----CCCEEEeccCC
Q psy11135 80 LVFAVNS---MKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWA---VDMNQAQELAEQF----NIPFIKTSAKT 148 (191)
Q Consensus 80 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~---~~~~~~~~~~~~~----~~~~~~~s~~~ 148 (191)
+|+|+++ +.+.+.+. .+.. .++| +++|+||+|+.+.. ...++...+.+.. +++++++|+++
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999988 33433332 2222 2567 99999999997622 1223445555554 47899999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy11135 149 RMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~~ 166 (191)
|.|++++++.|...+...
T Consensus 151 G~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 151 GQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCchhHHHHHHHHHHhC
Confidence 999999999988776543
No 190
>KOG0076|consensus
Probab=99.86 E-value=3e-21 Score=125.17 Aligned_cols=160 Identities=23% Similarity=0.371 Sum_probs=122.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG 75 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 75 (191)
++.|+++|..++|||||+.++..... +....+|.+-. ..+..+.+.. +.+||..|+...+++|..+|..+
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVCNAP--LSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeeccce--eEEEEcCChHHHHHHHHHHHHHh
Confidence 57899999999999999998864331 12233333322 2223344444 88999999999999999999999
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH---HHHcC---CCEEEeccCCC
Q psy11135 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL---AEQFN---IPFIKTSAKTR 149 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~---~~~~~---~~~~~~s~~~~ 149 (191)
+++++++|+++++.++.....++.+...-...+.|+++.+||.|+.+.. ...+.... ++..+ .++.++||.+|
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~-~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM-EAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh-hHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 9999999999999998888777777654455689999999999988722 33333322 23332 67999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy11135 150 MGVDDAFYTLVREIKKD 166 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~~ 166 (191)
+|+++...|+...+.++
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999998876
No 191
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=139.89 Aligned_cols=152 Identities=24% Similarity=0.277 Sum_probs=117.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~ 72 (191)
.+||+++|.|++|||||+|+|.+.+ .+++.++|+++.....+.++|.. +.++||+|..+-.. .....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 5899999999999999999999887 78899999999999999999888 78899999664332 223447
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..+|.+++++|.+.+.+-..... .. ....+.|+++|.||.|+......... ....+.+++.+|+++++|+
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~-----~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL-----IE-LLPKKKPIIVVLNKADLVSKIELESE----KLANGDAIISISAKTGEGL 364 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH-----HH-hcccCCCEEEEEechhcccccccchh----hccCCCceEEEEecCccCH
Confidence 78999999999998522111111 11 23457899999999999874332111 2223347899999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy11135 153 DDAFYTLVREIKKD 166 (191)
Q Consensus 153 ~~l~~~i~~~~~~~ 166 (191)
+.+.++|.+.+...
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999988765
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=8.6e-20 Score=129.13 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=104.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~ 76 (191)
+|+++|++|+|||||++++.+.. ....++.++.+.......+++. .+++||+||..+.. ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 68999999999999999999876 3344555554444444455554 48899999974322 22345688999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH----------------------------------------H-hh-----------
Q psy11135 77 GFLLVFAVNSMK-SFEDIGSYREQI----------------------------------------K-RV----------- 103 (191)
Q Consensus 77 ~~i~v~d~~~~~-s~~~~~~~~~~~----------------------------------------~-~~----------- 103 (191)
++++|+|+++++ +...+...+... . .+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998755 333333332211 0 00
Q ss_pred ----------cC--CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 104 ----------KD--AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 104 ----------~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
.. ..-.|.++|+||+|+. ..++...+++. .+++++||+++.|++++++.|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 00 1125899999999985 34555555543 46899999999999999999988764
No 193
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=119.22 Aligned_cols=156 Identities=22% Similarity=0.270 Sum_probs=115.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------ccC---CccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE--------YDP---TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
|.+.||+|.|+.++||||+++++........ ... ++...-......++ ...+.+++||||.+++-.|.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 4678999999999999999999987773211 111 11111111112222 23488999999999999999
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc--CCCEEEeccC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF--NIPFIKTSAK 147 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 147 (191)
.+.+++.++++++|.+++..+ .....+.-+.... ..|++|++||.|+.... +.+..+++.+.. ..++++.++.
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~---~ip~vVa~NK~DL~~a~-ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN---PIPVVVAINKQDLFDAL-PPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc---CCCEEEEeeccccCCCC-CHHHHHHHHHhccCCCceeeeecc
Confidence 999999999999999998887 4445444443321 28999999999998744 556665555544 7899999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy11135 148 TRMGVDDAFYTLVRE 162 (191)
Q Consensus 148 ~~~~v~~l~~~i~~~ 162 (191)
++++..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999999987766
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=7.8e-20 Score=144.42 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=110.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCC-----Cc---c------CCccceEEEEEEE---cCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--FVD-----EY---D------PTIEDSYRKQVVI---DGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~-----~~---~------~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~ 65 (191)
+++++|+.++|||||+.+++... +.. .. . +.+-........+ ++..+.+.+|||||+.++.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 78999999999999999998642 110 00 0 0000000111111 5567889999999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC---EE
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP---FI 142 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~ 142 (191)
..+..+++.+|++++|+|+++.........|.... ..+.|+++|+||+|+.... ..+...++.+.++++ ++
T Consensus 89 ~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~~~vi 162 (600)
T PRK05433 89 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAAD-PERVKQEIEDVIGIDASDAV 162 (600)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCccc-HHHHHHHHHHHhCCCcceEE
Confidence 88899999999999999998865544444443222 1367999999999986532 222334555656654 89
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++||++|.|+++++++|.+.+...
T Consensus 163 ~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 163 LVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred EEecCCCCCHHHHHHHHHHhCccc
Confidence 999999999999999999887653
No 195
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=3.7e-20 Score=137.71 Aligned_cols=156 Identities=24% Similarity=0.284 Sum_probs=119.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-----------HHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-----------AMRD 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~ 69 (191)
.+||+++|.|++|||||+|++++.+ +..+..+|+.+.....+..++.. +.++||+|..+-. .-..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhhH
Confidence 5899999999999999999999988 67788889999888888888888 6779999944311 1223
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHHHH-HHHHHc----CCCEEE
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQ-ELAEQF----NIPFIK 143 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~-~~~~~~----~~~~~~ 143 (191)
..+..++++++++|++.+- .+....+..+....+.++++|+||+|+.+. ....++.+ .+.+.+ .+++++
T Consensus 256 ~aI~~a~vvllviDa~~~~-----~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 256 KAIERADVVLLVIDATEGI-----SEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred hHHhhcCEEEEEEECCCCc-----hHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 4467799999999998853 344555566666678999999999998773 22333322 222222 268999
Q ss_pred eccCCCCCHHHHHHHHHHHHHh
Q psy11135 144 TSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
+||.++.+++.+|+++......
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHH
Confidence 9999999999999998877654
No 196
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=3.8e-20 Score=148.77 Aligned_cols=152 Identities=23% Similarity=0.293 Sum_probs=106.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+...|+++|+.++|||||+++|....+.....+... ......+.+++ ..+.||||||+..+..++...+..+|++++
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 356799999999999999999988775544332222 11122334444 458899999999999998888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-H------HHHHHcC--CCEEEeccCCCCC
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-Q------ELAEQFN--IPFIKTSAKTRMG 151 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~------~~~~~~~--~~~~~~s~~~~~~ 151 (191)
|+|+++.........| .. ....+.|+++++||+|+.... .+.. . .++..++ ++++++||++|.|
T Consensus 367 VVdAddGv~~qT~e~i-~~----a~~~~vPiIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 367 VVAADDGVMPQTIEAI-NH----AKAAGVPIIVAINKIDKPGAN--PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEECCCCCCHhHHHHH-HH----HHhcCCcEEEEEECccccccC--HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 9999873221111111 11 223468999999999996522 1111 1 1233444 6899999999999
Q ss_pred HHHHHHHHHHH
Q psy11135 152 VDDAFYTLVRE 162 (191)
Q Consensus 152 v~~l~~~i~~~ 162 (191)
+++++++|...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=1.8e-20 Score=125.25 Aligned_cols=149 Identities=21% Similarity=0.232 Sum_probs=101.4
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccCCEE
Q psy11135 8 VVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTGEGF 78 (191)
Q Consensus 8 v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~~~~ 78 (191)
++|++|+|||||++++.+.... ....+++............ ...+.+||+||..... .....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5799999999999999987643 2333333333333333221 3458899999966543 2444567889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH----HHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ----AQELAEQFNIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~~~~~~~~s~~~~~~v~~ 154 (191)
++++|..+........ +.... ...+.|+++|+||+|+......... ........+++++++|+.++.|+.+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 9999999977665554 22222 2347899999999998763322221 1222333457899999999999999
Q ss_pred HHHHHHHH
Q psy11135 155 AFYTLVRE 162 (191)
Q Consensus 155 l~~~i~~~ 162 (191)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998764
No 198
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.85 E-value=5.8e-20 Score=142.42 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=124.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-------HHHHHhhc
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-------SAMRDQYM 72 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~ 72 (191)
|+..+|+++|+||+|||||+|++++.. ...++++.+-+.........++. ++++|+||.... .-.+...+
T Consensus 1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll 78 (653)
T COG0370 1 MKKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLL 78 (653)
T ss_pred CCcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence 678899999999999999999999888 67888888888888888888877 788999994321 11233333
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135 73 -RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151 (191)
Q Consensus 73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 151 (191)
...|+++-+.|++|.+..- ....++... +.|++++.|++|+.++.-..-+.+.+.+.+|+|+++++|++|.|
T Consensus 79 ~~~~D~ivnVvDAtnLeRnL---yltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 79 EGKPDLIVNVVDATNLERNL---YLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred cCCCCEEEEEcccchHHHHH---HHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCC
Confidence 4579999999999966422 333334442 67999999999998765555667788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhh
Q psy11135 152 VDDAFYTLVREIKKDK 167 (191)
Q Consensus 152 v~~l~~~i~~~~~~~~ 167 (191)
++++...+.+...+..
T Consensus 152 ~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 152 LEELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999987655443
No 199
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.85 E-value=6.1e-20 Score=118.04 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=96.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh----hHHHHHHhhcccCCEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE----EYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~~~~i~ 80 (191)
||+++|+.|||||||+++|.+.+. .+..|.... +. =.++||||-- .+....-....++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------YY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------ec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999988664 222221111 11 1348999932 333444444668999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i 159 (191)
+.|.+++.+...- .+...-..|+|-|+||+|+.......+.+.++.+..|+ .+|++|+.+|+|++++.++|
T Consensus 70 l~dat~~~~~~pP--------~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 70 LQDATEPRSVFPP--------GFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred EecCCCCCccCCc--------hhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence 9999996542211 11112357999999999998545566777788888887 68999999999999999987
Q ss_pred H
Q psy11135 160 V 160 (191)
Q Consensus 160 ~ 160 (191)
.
T Consensus 142 ~ 142 (143)
T PF10662_consen 142 E 142 (143)
T ss_pred h
Confidence 4
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=3e-19 Score=140.22 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc----cceEEEEEEEc-------------CeEEEEEEEeCCChhhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----EDSYRKQVVID-------------GETALLDILDTAGQEEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~----~~~~~~~~~~~-------------~~~~~~~~~D~~g~~~~~ 65 (191)
.--|+++|++++|||||+++|.+..+.....+.. +..+....... .....+.+|||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 3458999999999999999999887644332211 11111000000 011137899999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-------------CHHH
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-------------DMNQ 129 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~ 129 (191)
.++..+++.+|++++|+|+++ +.+++.+. .+. ..+.|+++++||+|+....- ..+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 999999999999999999987 44433332 122 23689999999999864110 0000
Q ss_pred ------------HHHHHH------------Hc--CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 130 ------------AQELAE------------QF--NIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 130 ------------~~~~~~------------~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
..+++. .+ .++++++||++|+|+++++.+|.....+
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~ 217 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHH
Confidence 011111 12 2689999999999999999988765443
No 201
>KOG0072|consensus
Probab=99.83 E-value=1.7e-20 Score=117.98 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=119.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++.+|+++|-.|+||||++.++.-.+..... |+.+.... .+..++..+++||..|+-..+..|+.|+++.+++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 4789999999999999999888766655544 33332222 2334666789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH----HHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
+|.+|.+........+..+...-+.....+++++||.|........+....+ .+...+.+++.||.+|+|++++.+
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~D 172 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMD 172 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHH
Confidence 9999988766665555555444445567899999999986533222222111 112226799999999999999999
Q ss_pred HHHHHHHhh
Q psy11135 158 TLVREIKKD 166 (191)
Q Consensus 158 ~i~~~~~~~ 166 (191)
|+.+.+.++
T Consensus 173 WL~~~l~~~ 181 (182)
T KOG0072|consen 173 WLQRPLKSR 181 (182)
T ss_pred HHHHHHhcc
Confidence 999888653
No 202
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.7e-19 Score=118.56 Aligned_cols=154 Identities=18% Similarity=0.258 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhhc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRDQYM 72 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 72 (191)
.-|+++|.++||||||||+|++.+ .+.....+..++.-..+.+++. +.++|.|| .+.+......|+
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred cEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 358999999999999999999977 4444333333444444455554 57899999 455666777776
Q ss_pred cc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC----CC--EEE
Q psy11135 73 RT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN----IP--FIK 143 (191)
Q Consensus 73 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~--~~~ 143 (191)
.. -.++++++|+..+-.-. + .++..+....+.|+++|+||+|..+...........++..+ .. ++.
T Consensus 102 ~~R~~L~~vvlliD~r~~~~~~--D---~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~ 176 (200)
T COG0218 102 EKRANLKGVVLLIDARHPPKDL--D---REMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL 176 (200)
T ss_pred hhchhheEEEEEEECCCCCcHH--H---HHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence 55 46677888887743321 1 13334344458999999999999875444444455554443 22 788
Q ss_pred eccCCCCCHHHHHHHHHHHHHh
Q psy11135 144 TSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
+|+..+.|++++.+.|.+.+.+
T Consensus 177 ~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 177 FSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EecccccCHHHHHHHHHHHhhc
Confidence 8999999999999999887764
No 203
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=5e-19 Score=123.51 Aligned_cols=145 Identities=19% Similarity=0.100 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC--c------------------------------cCCccceEEEEEEEcCeEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDE--Y------------------------------DPTIEDSYRKQVVIDGETAL 52 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~--~------------------------------~~~~~~~~~~~~~~~~~~~~ 52 (191)
||+++|++|+|||||+++|+...-... . ..++.+.....+..++. .
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~--~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKR--K 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCc--e
Confidence 689999999999999999975431111 0 11111111122223333 4
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-----CH
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-----DM 127 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~~ 127 (191)
+.+|||||+.++.......+..+|++++|+|+++...-. ....+..+.. . ...++++|+||+|+..... ..
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHHH
Confidence 789999999887766666788999999999998753211 1111111211 1 1235788999999864211 12
Q ss_pred HHHHHHHHHcCC---CEEEeccCCCCCHHHH
Q psy11135 128 NQAQELAEQFNI---PFIKTSAKTRMGVDDA 155 (191)
Q Consensus 128 ~~~~~~~~~~~~---~~~~~s~~~~~~v~~l 155 (191)
.+.+.+.+.++. +++++||+++.|+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 234455566664 5899999999998753
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=3.9e-19 Score=135.33 Aligned_cols=161 Identities=22% Similarity=0.187 Sum_probs=103.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCC---Ccc--CCccce-----------------EEEEEEEcC------eEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVD---EYD--PTIEDS-----------------YRKQVVIDG------ETAL 52 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~---~~~--~~~~~~-----------------~~~~~~~~~------~~~~ 52 (191)
+++++|+++|+.++|||||+++|.+..... +.. .|.... +......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 578999999999999999999997532110 000 000000 000000011 1346
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHH
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQ 129 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~ 129 (191)
+.+||+||++++..........+|++++++|+++..........+..+.. . ...|+++++||+|+...... .++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 89999999999988877778889999999999864211112222222222 1 12478999999998752211 223
Q ss_pred HHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 130 AQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 130 ~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
...+.+.. +++++++|+++++|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 33333332 578999999999999999999988764
No 205
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=1.1e-18 Score=120.13 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=92.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC-----------CCccC---Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-----------DEYDP---TIE-DSYRKQVVIDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-----------~~~~~---~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (191)
+.++|+++|+.++|||||+++|+..... .+..+ ..+ +.......+......+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 3689999999999999999999864100 00000 000 11111222333445578999999998887
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc----CHHHHHHHHHHcC---
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV----DMNQAQELAEQFN--- 138 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~~~~~~~~~~~~--- 138 (191)
.....+..+|++++|+|+...-.- .....+..+.. .+.| +++++||+|+..... ..++...+....+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777778899999999999764221 12233333332 3456 789999999864221 1123444444443
Q ss_pred --CCEEEeccCCCCCH
Q psy11135 139 --IPFIKTSAKTRMGV 152 (191)
Q Consensus 139 --~~~~~~s~~~~~~v 152 (191)
++++++|+++|.|+
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 68999999999875
No 206
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=4.9e-19 Score=135.86 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=96.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------------------------ccCCccceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (191)
+.++|+++|++++|||||+++|+... .... ...++.+... ..++..
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~--~~~~~~ 82 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAH--KKFETD 82 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeee--EEEecC
Confidence 46899999999999999999998443 1100 0111111112 233444
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCCc----
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---- 124 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---- 124 (191)
.+.+.+|||||+.++.......+..+|++++|+|++++..+... ...+...... ...|+++++||+|+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHH
Confidence 56689999999988766555557889999999999873111111 1222222221 124699999999987511
Q ss_pred -cCHHHHHHHHHHcC-----CCEEEeccCCCCCHHHHH
Q psy11135 125 -VDMNQAQELAEQFN-----IPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 125 -~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l~ 156 (191)
...++..++.+..+ ++++++||++|.|+++..
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11234455555555 469999999999998743
No 207
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.82 E-value=1.9e-18 Score=116.67 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChh----------hHHHHHHhhcc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQE----------EYSAMRDQYMR 73 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~~~ 73 (191)
.|+++|.+|+|||||++.+.+........++... ........++ .+.+|||||.. .+......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4789999999999999999955433322233221 1122222222 58899999943 23344444443
Q ss_pred ---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH---HHHHHHH--HcCCCEEEec
Q psy11135 74 ---TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN---QAQELAE--QFNIPFIKTS 145 (191)
Q Consensus 74 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~--~~~~~~~~~s 145 (191)
..+.+++++|.++..+.... .....+.. .+.|+++|+||+|+........ ......+ ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 35678889988765322111 11222222 2479999999999864221111 1222222 2346899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q psy11135 146 AKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~ 162 (191)
++++.++++++++|.+.
T Consensus 153 a~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 153 SLKGQGIDELRALIEKW 169 (170)
T ss_pred cCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 208
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=9e-19 Score=138.07 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCCCcc---------C---Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYD---------P---TIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~~---------~---~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
+|+++|+.++|||||+++|+... +..... + ..+ +.......+....+.+.+|||||+.++.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 68999999999999999998632 211110 0 001 11112223334456689999999999998889
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHH-------HHcCCC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELA-------EQFNIP 140 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~-------~~~~~~ 140 (191)
.+++.+|++++|+|+.+.. ......++..+.. .++|.++|+||+|+..... ..++...+. ++..++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence 9999999999999997732 2334455555444 3679999999999865322 122333333 234578
Q ss_pred EEEeccCCCC----------CHHHHHHHHHHHHHhh
Q psy11135 141 FIKTSAKTRM----------GVDDAFYTLVREIKKD 166 (191)
Q Consensus 141 ~~~~s~~~~~----------~v~~l~~~i~~~~~~~ 166 (191)
++++|+++|. |+..+|+.|++.++..
T Consensus 158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999999996 7999999999988754
No 209
>KOG0096|consensus
Probab=99.82 E-value=7.2e-20 Score=120.43 Aligned_cols=161 Identities=27% Similarity=0.511 Sum_probs=136.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.++++++|..|.||||++++...+++-..+.++.+-........ +.+.+.+..|||+|++.+......++-...+.+++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999888988888555544443 44458899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
||++..-++.++..|...+.+.++ ++|+++.+||.|...+.+ ......+.+..++.+++.|++.+.|.+.-|-++.+
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceecccccc-ccccceeeecccceeEEeecccccccccchHHHhh
Confidence 999999999999999998887544 689999999999876442 23344556677889999999999999999999999
Q ss_pred HHHhh
Q psy11135 162 EIKKD 166 (191)
Q Consensus 162 ~~~~~ 166 (191)
.+...
T Consensus 167 Kl~G~ 171 (216)
T KOG0096|consen 167 KLTGD 171 (216)
T ss_pred hhcCC
Confidence 88653
No 210
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.81 E-value=8.2e-19 Score=134.59 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=97.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------------------Cc------cCCccceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------EY------DPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------------~~------~~~~~~~~~~~~~~~~~ 49 (191)
+.++|+++|+.++|||||+.+|+... ... +. ...+.+. ....+...
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~--~~~~~~~~ 83 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDV--AHWKFETD 83 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEE--EEEEEccC
Confidence 36899999999999999999998532 110 00 0011111 11223444
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-c--
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDI--GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-A-- 124 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~-- 124 (191)
.+.+.+|||||++++.......+..+|++++|+|+++.++.... ...+ .+.... ...|+++|+||+|+... .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 56689999999998876666667899999999999987432111 1111 122211 23579999999999641 1
Q ss_pred --cCHHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135 125 --VDMNQAQELAEQFN-----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 125 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l 155 (191)
...++...+++..+ ++++++||++|.|+.+.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 11344556666665 57999999999999863
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=2.1e-18 Score=135.91 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CCCCcc------------CCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYD------------PTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMR 68 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~~~~~------------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 68 (191)
-+|+++|+.++|||||+++++... +..... .+.+ +.......++...+.+.+|||||+.++...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 479999999999999999998632 222110 0111 1112223445556779999999999999999
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHH-------HcCC
Q psy11135 69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAE-------QFNI 139 (191)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~-------~~~~ 139 (191)
..+++.+|++++|+|+.+.... ....++..... .++|.++++||+|....... .++...+.. ...+
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence 9999999999999999874322 22333333333 36899999999998653221 222333321 2347
Q ss_pred CEEEeccCCCC----------CHHHHHHHHHHHHHhh
Q psy11135 140 PFIKTSAKTRM----------GVDDAFYTLVREIKKD 166 (191)
Q Consensus 140 ~~~~~s~~~~~----------~v~~l~~~i~~~~~~~ 166 (191)
|++++|+.+|. ++..+++.|++.++..
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 89999999998 5899999999888754
No 212
>KOG0074|consensus
Probab=99.81 E-value=3.8e-19 Score=111.66 Aligned_cols=153 Identities=24% Similarity=0.307 Sum_probs=116.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|-.++|||||+..|.+... ....||.+-.. ..+.. ...+.+.+||.+|+...+..|..||.+.|++|+|
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~-k~v~~-~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNT-KKVEY-DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcce-EEEee-cCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 589999999999999999999876553 33334444222 22222 3346689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--------CCEEEeccCCCCCHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--------IPFIKTSAKTRMGVD 153 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~v~ 153 (191)
+|.+|...++++..-+.++...-.....|+++..||.|+... ...++.+.+.+ +.+-+||+..++|+.
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta----a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA----AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh----cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 999999889988887777776566678999999999997642 22333333333 346779999999888
Q ss_pred HHHHHHHH
Q psy11135 154 DAFYTLVR 161 (191)
Q Consensus 154 ~l~~~i~~ 161 (191)
+-.+++..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 77777654
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=1.6e-18 Score=137.21 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=100.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCcc--CCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH---FVDEYD--PTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGF 78 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~---~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 78 (191)
-|+++|+.++|||||+++|.+.. +..+.. .|....+. .... ++. .+.+|||||++++.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~-~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYA-YWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeE-EEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 47899999999999999998643 222211 11111111 1212 233 378999999999877777778899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc---CHHHHHHHHHHcC---CCEEEeccCCCCC
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV---DMNQAQELAEQFN---IPFIKTSAKTRMG 151 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~---~~~~~~s~~~~~~ 151 (191)
++|+|+++...-. ..+.+..+.. .+.| +++|+||+|+.+... ..++...+....+ .+++++|+++|.|
T Consensus 79 lLVVda~eg~~~q-T~ehl~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 79 LLVVACDDGVMAQ-TREHLAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 9999998732111 1112222222 2345 689999999875221 1223344444444 6899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11135 152 VDDAFYTLVREIKK 165 (191)
Q Consensus 152 v~~l~~~i~~~~~~ 165 (191)
++++++.|.....+
T Consensus 154 I~~L~~~L~~~~~~ 167 (614)
T PRK10512 154 IDALREHLLQLPER 167 (614)
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999875543
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=6.8e-18 Score=133.07 Aligned_cols=155 Identities=22% Similarity=0.242 Sum_probs=100.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCC----ccceEEEEEEE---cCeEE----------EEEEEeCCChhhH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT----IEDSYRKQVVI---DGETA----------LLDILDTAGQEEY 64 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~----------~~~~~D~~g~~~~ 64 (191)
++..|+++|++++|||||+++|.+........+. .+..+...... .+... .+.+|||||++.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999999876644333321 11111100000 01110 1678999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-----C--------HH
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-----D--------MN 128 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----~--------~~ 128 (191)
...+...+..+|++++|+|+++ +.++..+.. +. ..+.|+++++||+|+..... . ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 9888888899999999999987 444443322 11 23689999999999853100 0 00
Q ss_pred H-----------HHHHHHHc---------------CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 129 Q-----------AQELAEQF---------------NIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 129 ~-----------~~~~~~~~---------------~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
. ........ .++++++|+.+|.|++++++.+...+.
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~ 218 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHH
Confidence 0 00011111 257999999999999999998865443
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=1.7e-18 Score=122.73 Aligned_cols=113 Identities=16% Similarity=0.212 Sum_probs=77.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-----ccC-Ccc-----------ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDE-----YDP-TIE-----------DSYRKQVVIDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~-----~~~-~~~-----------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
+|+++|+.|+|||||+++++...-... ... +.. +.......+......+.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999986431100 000 000 011112233344556899999999999888
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
...+++.+|++++|+|.++.... ....++..+.. .+.|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccC
Confidence 88899999999999999885432 23344444433 3689999999999853
No 216
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=3.1e-18 Score=120.33 Aligned_cols=151 Identities=22% Similarity=0.190 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccC----------------Ccc--c-eE---------EE---------EEEEc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDP----------------TIE--D-SY---------RK---------QVVID 47 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~----------------~~~--~-~~---------~~---------~~~~~ 47 (191)
||+++|+.++|||||++++....+...... +.. . .. .+ ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999986543221100 000 0 00 00 00111
Q ss_pred CeEEEEEEEeCCChhhHHHHHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135 48 GETALLDILDTAGQEEYSAMRDQYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 48 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (191)
.....+.++||||+.++.......+. .+|++++|+|+.....- ....++..+. ..+.|+++|+||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~----~~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLAL----ALNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHH----HcCCCEEEEEECccccCHHH
Confidence 22345889999999988765554453 68999999998764321 1122333222 34679999999999865322
Q ss_pred CHHHHHHHHHHc-----------------------------CCCEEEeccCCCCCHHHHHHHHH
Q psy11135 126 DMNQAQELAEQF-----------------------------NIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 126 ~~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
..+...++.+.+ .+|++.+|+.+|+|++++++.|.
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 222223232221 24899999999999999988764
No 217
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=3.9e-18 Score=129.82 Aligned_cols=160 Identities=23% Similarity=0.224 Sum_probs=99.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC---CCcc--CCccce-----------------EEEEEEEc--C----eEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV---DEYD--PTIEDS-----------------YRKQVVID--G----ETALL 53 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~--~~~~~~-----------------~~~~~~~~--~----~~~~~ 53 (191)
+.++|+++|+.++|||||+.+|.+.... .+.. .|.... +......+ + ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4789999999999999999999653211 0000 011000 00000001 0 12468
Q ss_pred EEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHH
Q psy11135 54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQ 129 (191)
Q Consensus 54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~ 129 (191)
.+|||||+.++..........+|++++++|++++. .... ...+..+... ...|+++|+||+|+.+.... .++
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDII---GIKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHHH
Confidence 99999999888766555566789999999998642 1111 1122222221 12478999999999753221 123
Q ss_pred HHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 130 AQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 130 ~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
...+.+.. +++++++||+++.|++++++.|...+.+
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 33333332 4789999999999999999999887643
No 218
>KOG1423|consensus
Probab=99.80 E-value=5e-18 Score=120.05 Aligned_cols=161 Identities=18% Similarity=0.174 Sum_probs=103.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HH---HHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YS---AMRD 69 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~---~~~~ 69 (191)
+.+.|+|+|.|++|||||.|.+.+..+.........++....-.+.....++.|+||||... .. ..-.
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 35789999999999999999999998544333333333334444555666789999999321 11 1223
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC--------------ccC---HHHHHH
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW--------------AVD---MNQAQE 132 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~---~~~~~~ 132 (191)
..+..+|.+++++|+++......- ..+..+..+ ...|-++|+||.|.... .++ .+..+.
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHP-RVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 446679999999999973332111 122222222 35799999999997541 111 111112
Q ss_pred HHHHc---------CC----CEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 133 LAEQF---------NI----PFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 133 ~~~~~---------~~----~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
+.... |+ .+|.+||+.|+|++++.++|..++...
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 21111 22 389999999999999999999887653
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=3.3e-18 Score=119.89 Aligned_cols=112 Identities=24% Similarity=0.261 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCCc------cceE---EEEEEE---cCeEEEEEEEeCCCh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEY-----------DPTI------EDSY---RKQVVI---DGETALLDILDTAGQ 61 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----------~~~~------~~~~---~~~~~~---~~~~~~~~~~D~~g~ 61 (191)
+|+++|+.|+|||||+++|+........ ..+. +... ...... ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875532210 0000 0000 011111 355678999999999
Q ss_pred hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
.++......++..+|++++++|+.+..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987655432 233333322 358999999999985
No 220
>KOG4423|consensus
Probab=99.78 E-value=1.2e-20 Score=123.80 Aligned_cols=164 Identities=27% Similarity=0.456 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++++|+|..|+|||+++.+.....+...|..+.+..+ ...... +...+.+++||.+|++++..+..-+++.+++.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 6889999999999999999988877666666666222 222233 34446689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCcc--CHHHHHHHHHHcCC-CEEEeccCCCCCHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAV--DMNQAQELAEQFNI-PFIKTSAKTRMGVDDA 155 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l 155 (191)
||++++.+++....|.+.+.+-.. ....|+++..||||..+... ......+++++.|+ ..+++|++.+.++.|+
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea 185 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEA 185 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHH
Confidence 999999999999999998865432 23467899999999987333 34677888999996 6999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy11135 156 FYTLVREIKKDK 167 (191)
Q Consensus 156 ~~~i~~~~~~~~ 167 (191)
-..+++.+.-..
T Consensus 186 ~r~lVe~~lvnd 197 (229)
T KOG4423|consen 186 QRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHhhc
Confidence 999998887654
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.3e-17 Score=126.50 Aligned_cols=156 Identities=19% Similarity=0.175 Sum_probs=99.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------C------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------E------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
+.++|+++|+.++|||||+++|++..... + ....+.+ .....+......+.++||||+.++
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~--~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITIN--TAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEE--EEeeEecCCCcEEEEEECCCHHHH
Confidence 46899999999999999999998632100 0 0011111 112233334445789999999988
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccC----HHHHHHHHHHcC-
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVD----MNQAQELAEQFN- 138 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~~~- 138 (191)
.......+..+|++++|+|++....-. ....+..+.. .+.| +++++||+|+...+.. .++...+.+..+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 776666678899999999998632211 1222222222 2567 6789999998742211 223444444454
Q ss_pred ----CCEEEeccCCCC--------CHHHHHHHHHHHHH
Q psy11135 139 ----IPFIKTSAKTRM--------GVDDAFYTLVREIK 164 (191)
Q Consensus 139 ----~~~~~~s~~~~~--------~v~~l~~~i~~~~~ 164 (191)
++++++|++++. ++.++++.|.+.+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 56777777766654
No 222
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=1.5e-17 Score=116.90 Aligned_cols=144 Identities=19% Similarity=0.115 Sum_probs=88.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-C-------------------------Ccc------CCccceEEEEEEEcCeEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFV-D-------------------------EYD------PTIEDSYRKQVVIDGETAL 52 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~-~-------------------------~~~------~~~~~~~~~~~~~~~~~~~ 52 (191)
+|+++|+.++|||||+.+|+...-. . +.. .++.+..... +......
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~--~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAK--FETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEE--EeeCCeE
Confidence 4899999999999999999643210 0 000 0111111222 2333455
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh------HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS------FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 126 (191)
+.+|||||+..+.......+..+|++++|+|+++... .......+..... ....|+++++||+|+......
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART---LGVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH---cCCCeEEEEEEcccccccccc
Confidence 8999999998877766667788999999999988421 1111122222211 123689999999998742111
Q ss_pred -------HHHHHHHHHHcC-----CCEEEeccCCCCCHH
Q psy11135 127 -------MNQAQELAEQFN-----IPFIKTSAKTRMGVD 153 (191)
Q Consensus 127 -------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~ 153 (191)
.+++..+....+ ++++++||++|.|++
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 112222334443 569999999999986
No 223
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=1.4e-17 Score=115.32 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc---eEEEEEEEcCeEEEEEEEeCCChhhHHH-----HHHhhccc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED---SYRKQVVIDGETALLDILDTAGQEEYSA-----MRDQYMRT 74 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~ 74 (191)
++||+++|.+|+|||||+|++.+.........+++. ..............+.+||+||..+... .....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999986543221111110 0000001111122478999999653211 22233667
Q ss_pred CCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--------CHHH-HHHH-------HHHc
Q psy11135 75 GEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--------DMNQ-AQEL-------AEQF 137 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~-~~~~-------~~~~ 137 (191)
+|+++++.+- . +... ..++..+... +.|+++|+||+|+..... ..++ ..++ ....
T Consensus 81 ~d~~l~v~~~-~---~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 81 YDFFIIISST-R---FSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred cCEEEEEeCC-C---CCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 8888887432 2 2222 3344444442 579999999999853111 1111 1111 1122
Q ss_pred C---CCEEEeccC--CCCCHHHHHHHHHHHHHhhhhh
Q psy11135 138 N---IPFIKTSAK--TRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 138 ~---~~~~~~s~~--~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
+ .++|.+|+. .++++..+.+.++..|.+.+..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 2 368889998 5799999999999999876543
No 224
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=7.9e-17 Score=118.49 Aligned_cols=154 Identities=21% Similarity=0.237 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcC-eEEEEEEEeCCCh---------hhHHHHHHhhc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDG-ETALLDILDTAGQ---------EEYSAMRDQYM 72 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~~ 72 (191)
..|.++|..++|||||+|++++... ..+....+-+.......+.+ .. +.+-||.|- +.+.++.+. .
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksTLEE-~ 269 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKSTLEE-V 269 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHHHHH-h
Confidence 4689999999999999999997763 34444444444444455553 44 678999992 234444444 5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..+|.++.|+|++++.....+......+.. ......|+++|.||+|+..... ....+.+... ..+.+||+++.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~e-l~~~~~p~i~v~NKiD~~~~~~---~~~~~~~~~~-~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAE-IGADEIPIILVLNKIDLLEDEE---ILAELERGSP-NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHH-cCCCCCCEEEEEecccccCchh---hhhhhhhcCC-CeEEEEeccCcCH
Confidence 679999999999999777777666655555 3445699999999999875332 1222222222 6899999999999
Q ss_pred HHHHHHHHHHHHh
Q psy11135 153 DDAFYTLVREIKK 165 (191)
Q Consensus 153 ~~l~~~i~~~~~~ 165 (191)
+.+.+.|...+..
T Consensus 345 ~~L~~~i~~~l~~ 357 (411)
T COG2262 345 DLLRERIIELLSG 357 (411)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999998874
No 225
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=6.1e-17 Score=115.84 Aligned_cols=158 Identities=23% Similarity=0.197 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh-----hHHHHHH----hhcc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-----EYSAMRD----QYMR 73 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~----~~~~ 73 (191)
.-|+|.|.||||||||++.+++.. -..+|+.|+....-..+..++.. ++++||||.- +.+.+-. ..-.
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R--~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR--IQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce--EEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 458899999999999999999877 67889888876666655445445 8899999932 2222111 1122
Q ss_pred cCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135 74 TGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 151 (191)
-.++++|+||.+... +++....++..+.... +.|+++|+||+|....+.-.+....+...-+.....+++..+.+
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCG 323 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhh
Confidence 378899999998743 5666667777776532 37999999999987533222222233333344578888899999
Q ss_pred HHHHHHHHHHHHHhh
Q psy11135 152 VDDAFYTLVREIKKD 166 (191)
Q Consensus 152 v~~l~~~i~~~~~~~ 166 (191)
++.+-..+.....+.
T Consensus 324 ~d~~~~~v~~~a~~~ 338 (346)
T COG1084 324 LDKLREEVRKTALEP 338 (346)
T ss_pred HHHHHHHHHHHhhch
Confidence 888887777765443
No 226
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.76 E-value=3e-17 Score=118.24 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=83.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCcc---------C-Ccc-----------ceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYD---------P-TIE-----------DSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~---------~-~~~-----------~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
+|+++|++|+|||||+++|+...-..... . +.. +.......++...+.+.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 68999999999999999998532110000 0 000 11122234455566789999999998
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI 139 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 139 (191)
+.......++.+|++++|+|+++.... ....++... ...++|+++++||+|+..... .+...++...++.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~----~~~~~P~iivvNK~D~~~a~~-~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC----RLRGIPIITFINKLDREGRDP-LELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH----HhcCCCEEEEEECCccCCCCH-HHHHHHHHHHHCC
Confidence 887777778999999999999874321 122333222 234689999999999865332 2234455555554
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.76 E-value=6.3e-17 Score=113.30 Aligned_cols=111 Identities=21% Similarity=0.282 Sum_probs=76.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CCCccC----------------CccceEEEEEEEc--------CeEEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDP----------------TIEDSYRKQVVID--------GETALLDILDT 58 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~----------------~~~~~~~~~~~~~--------~~~~~~~~~D~ 58 (191)
+|+++|+.++|||||+.+|+...- ...... +... ......+. +..+.+.+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~-~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKS-SAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhcccccc-ceEEEEEecCcccccCCCceEEEEECC
Confidence 689999999999999999985431 100000 0000 00111222 44678999999
Q ss_pred CChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
||+.++.......++.+|++++|+|+.+...... ...+.... ..+.|+++|+||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQAL----KERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHH----HcCCCEEEEEECCCcc
Confidence 9999999999999999999999999988654332 22222222 2357999999999986
No 228
>KOG1489|consensus
Probab=99.76 E-value=2.3e-17 Score=117.24 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=111.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH--------HHHhhcccCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA--------MRDQYMRTGE 76 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~ 76 (191)
|.++|.|++|||||++++...+ -..+|..|+-...-....+++... +.+-|.||.-+-.+ .+++ ++.++
T Consensus 199 vGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGlG~~FLrH-iER~~ 276 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGLGYKFLRH-IERCK 276 (366)
T ss_pred cceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccce-eEeccCccccccccccCcccHHHHHH-HHhhc
Confidence 5689999999999999999776 456666665533333344444332 88899999554322 2222 66799
Q ss_pred EEEEEEeCCCh---hhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC-EEEeccCCCCC
Q psy11135 77 GFLLVFAVNSM---KSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP-FIKTSAKTRMG 151 (191)
Q Consensus 77 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~ 151 (191)
.+++|+|++.. +.|+.+..++.++..|. ...+.|.++|+||+|+.+. ......++++.+.-+ ++++||+.+++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea--e~~~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA--EKNLLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH--HHHHHHHHHHHcCCCcEEEeeeccccc
Confidence 99999999998 88888888888886654 3457899999999998531 112246777777654 99999999999
Q ss_pred HHHHHHHHHH
Q psy11135 152 VDDAFYTLVR 161 (191)
Q Consensus 152 v~~l~~~i~~ 161 (191)
+.++++.|.+
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9999988754
No 229
>KOG1707|consensus
Probab=99.75 E-value=1.3e-17 Score=126.77 Aligned_cols=162 Identities=25% Similarity=0.396 Sum_probs=116.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++++||+++|..|+||||||-++...+++..-++-.+ .+..........+...++|++.....+......++.++++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 4789999999999999999999999998766544333 222223333344447899998766666666777999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhc-CCCCCcEEEEEecCCCCCCccC-HHH-HHHHHHHcC-C-CEEEeccCCCCCHHH
Q psy11135 81 VFAVNSMKSFEDIG-SYREQIKRVK-DAEEVPMVLVGNKCDLSTWAVD-MNQ-AQELAEQFN-I-PFIKTSAKTRMGVDD 154 (191)
Q Consensus 81 v~d~~~~~s~~~~~-~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~-~~~-~~~~~~~~~-~-~~~~~s~~~~~~v~~ 154 (191)
+|+++++++++.+. .|+..++... ...+.|+|+|+||.|....... .+. ...+-.++. + ..++|||++-.++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 99999999999996 5665555432 2357999999999999873222 122 222222222 1 358899999999999
Q ss_pred HHHHHHHHH
Q psy11135 155 AFYTLVREI 163 (191)
Q Consensus 155 l~~~i~~~~ 163 (191)
+|....+++
T Consensus 166 ~fYyaqKaV 174 (625)
T KOG1707|consen 166 LFYYAQKAV 174 (625)
T ss_pred hhhhhhhee
Confidence 998766655
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=1.5e-16 Score=120.99 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=90.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCc------cCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF-----------VDEY------DPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~-----------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
+.++|+++|+.++|||||+++|++... ..+. ...+-+ .....++.....+.+|||||++++
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchHHH
Confidence 468999999999999999999974310 0000 111111 122334444556889999999988
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccC----HHHHHHHHHHcC-
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVD----MNQAQELAEQFN- 138 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~----~~~~~~~~~~~~- 138 (191)
..........+|++++|+|+.+..... ..+.+..+.. .+.|.+ +++||+|+.+.... .++...+.+.++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 766666677889999999998732211 1222222222 256655 68999998752211 234555666655
Q ss_pred ----CCEEEeccCCCC
Q psy11135 139 ----IPFIKTSAKTRM 150 (191)
Q Consensus 139 ----~~~~~~s~~~~~ 150 (191)
++++++|+.++.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 789999999874
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=5.6e-17 Score=123.67 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=91.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------Cc------cCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-----------EY------DPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
+.++|+++|++++|||||+++|++..... +. ...+.+. ....+......+.++||||+.++
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChHHH
Confidence 46899999999999999999998642110 00 0010011 11123333445789999999888
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccC----HHHHHHHHHHcC-
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVD----MNQAQELAEQFN- 138 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~~~- 138 (191)
.......+..+|++++++|+...-.- .....+..+.. .+.| +++++||+|+...... .+++..+.+..+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 77777778899999999999763221 12222222222 3568 7789999999752211 123444444443
Q ss_pred ----CCEEEeccCCCCC
Q psy11135 139 ----IPFIKTSAKTRMG 151 (191)
Q Consensus 139 ----~~~~~~s~~~~~~ 151 (191)
++++++|+.+|.+
T Consensus 164 ~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 164 PGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCcceEEEcchhhccc
Confidence 6899999998874
No 232
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=5.7e-17 Score=123.15 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=99.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC-------C----CCCccC---Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH-------F----VDEYDP---TIE-DSYRKQVVIDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~----~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (191)
+.++|+++|++++|||||+++|++.. . ..+..+ ..+ +.......+......+.++||||+.++..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 46899999999999999999998621 0 000000 000 01111122333344578999999998877
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccC----HHHHHHHHHHcC---
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVD----MNQAQELAEQFN--- 138 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~----~~~~~~~~~~~~--- 138 (191)
.....+..+|++++++|+.+.... ...+.+..+. ..+.|.+ +++||+|+...... .++...+.+.++
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPMP-QTREHILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 666778899999999999873221 1122332222 2356755 67999998742211 124445555553
Q ss_pred --CCEEEeccCCCC----------CHHHHHHHHHHHHH
Q psy11135 139 --IPFIKTSAKTRM----------GVDDAFYTLVREIK 164 (191)
Q Consensus 139 --~~~~~~s~~~~~----------~v~~l~~~i~~~~~ 164 (191)
++++++|+.++. ++.+++++|.+.+.
T Consensus 166 ~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 166 DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred CceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 679999999984 56777777776554
No 233
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=2.3e-17 Score=115.44 Aligned_cols=161 Identities=16% Similarity=0.222 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCcc--CCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-----HHHhhcccCCE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-----MRDQYMRTGEG 77 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~~~ 77 (191)
||+++|+.++||||+.+.++.+-.+.+.. .++........ .......+.+||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v-~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHV-RFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEE-ECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEE-ecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 79999999999999999998776543322 22222222222 223444689999999875433 46778999999
Q ss_pred EEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC-------HHHHHHHHHHcC---CCEEEe
Q psy11135 78 FLLVFAVNSMK---SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD-------MNQAQELAEQFN---IPFIKT 144 (191)
Q Consensus 78 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~---~~~~~~ 144 (191)
+|+|+|+...+ .+..+...+..+..+ .+++.+.+.++|+|+...... .+...+.....+ +.++.+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 99999998533 334444444444443 568899999999998762211 112223334445 678889
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhhh
Q psy11135 145 SAKTRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
|..+ +.+-++|..+++.+.++...
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP~~~~ 181 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIPNLST 181 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTSTTHCC
T ss_pred cCcC-cHHHHHHHHHHHHHcccHHH
Confidence 9877 68899999999988765443
No 234
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.6e-16 Score=120.29 Aligned_cols=158 Identities=24% Similarity=0.271 Sum_probs=112.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcC-eEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..=|.++|+...|||||+..+.+........+....+. .+....+. ....+.|+|||||+.|..++.....-+|.+++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 34578999999999999999998887665555444433 22333331 22348899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHH------HHHcC--CCEEEeccCCCCCH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL------AEQFN--IPFIKTSAKTRMGV 152 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~--~~~~~~s~~~~~~v 152 (191)
++++++.-..... +-..+.+..+.|++|++||+|..+.+.. ....++ .+.|+ ..++++||++|+|+
T Consensus 85 VVa~dDGv~pQTi-----EAI~hak~a~vP~iVAiNKiDk~~~np~-~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi 158 (509)
T COG0532 85 VVAADDGVMPQTI-----EAINHAKAAGVPIVVAINKIDKPEANPD-KVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI 158 (509)
T ss_pred EEEccCCcchhHH-----HHHHHHHHCCCCEEEEEecccCCCCCHH-HHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence 9999993222211 1122234568999999999999852211 111111 33343 46999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy11135 153 DDAFYTLVREIKKD 166 (191)
Q Consensus 153 ~~l~~~i~~~~~~~ 166 (191)
++++..++-...-.
T Consensus 159 ~eLL~~ill~aev~ 172 (509)
T COG0532 159 DELLELILLLAEVL 172 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776655
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.74 E-value=6.5e-17 Score=117.03 Aligned_cols=140 Identities=21% Similarity=0.304 Sum_probs=85.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhH-------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE----------YDPTIE-DSYRKQVVIDGETALLDILDTAGQEEY------- 64 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~------- 64 (191)
.++|+|+|..|+|||||+|++++..+... ..++.. .........++..+.+.+|||||..+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 68999999999999999999998875432 122222 222333445677788999999993211
Q ss_pred H-----------H--------HHHhhcc--cCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 65 S-----------A--------MRDQYMR--TGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 65 ~-----------~--------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
. . .+...+. .+|+++++++.+.. .+... ...++.+. ...|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 0 0 0112233 25666666665531 11111 22222222 2589999999999865
Q ss_pred C---ccCHHHHHHHHHHcCCCEEEeccCC
Q psy11135 123 W---AVDMNQAQELAEQFNIPFIKTSAKT 148 (191)
Q Consensus 123 ~---~~~~~~~~~~~~~~~~~~~~~s~~~ 148 (191)
. ....+...+.++.+++++|......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 1 1234445666778889988776543
No 236
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=113.28 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-------HHHhhcccC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-------MRDQYMRTG 75 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~ 75 (191)
-.++++|+|++|||||++.|++.+ -..+|..|+.+.......+++.. +++.|+||.-+-.+ ..-...++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 368999999999999999999887 56788888877777766777666 89999999554332 223457889
Q ss_pred CEEEEEEeCCChhh-HHHHHHHHHHHH-hhcC------------------------------------------------
Q psy11135 76 EGFLLVFAVNSMKS-FEDIGSYREQIK-RVKD------------------------------------------------ 105 (191)
Q Consensus 76 ~~~i~v~d~~~~~s-~~~~~~~~~~~~-~~~~------------------------------------------------ 105 (191)
|.+++|+|+....+ .+.+...+...- ....
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999987654 333332221110 0000
Q ss_pred ---------------CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 106 ---------------AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 106 ---------------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
..=+|-++|.||+|+.. .++...+.+.. .++++|+..+.|++++.+.|.+.+.--+
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR 292 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPG----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR 292 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccC----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence 00128899999999864 55555565555 7899999999999999999999886433
No 237
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.73 E-value=2e-16 Score=100.52 Aligned_cols=104 Identities=22% Similarity=0.343 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----------HHHHHHhhc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----------YSAMRDQYM 72 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~ 72 (191)
+|+|+|.+|+|||||+|+|++... .....+++..........++.. +.++||||... ....... +
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQ-I 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHH-H
Confidence 689999999999999999998642 3444455554444445566666 56899999532 1223344 4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (191)
..+|++++|+|..++.. +....++..+ . .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 78999999999877321 2233333333 2 47899999998
No 238
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1e-16 Score=112.17 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=105.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cC-CccceEEEEEEEcCeEEEEEEEeCCChhh-------HHHHHHhhc
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DP-TIEDSYRKQVVIDGETALLDILDTAGQEE-------YSAMRDQYM 72 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 72 (191)
++++|+++|..|+||||++|+|++++..... .+ +++........++++. +.+||+||..+ ++.....++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4789999999999999999999976643222 11 2222222233456655 78999999554 566667778
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---------cCHH-------HHHHHHHH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---------VDMN-------QAQELAEQ 136 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------~~~~-------~~~~~~~~ 136 (191)
...|.++++.++.++.---.. +.++.+.... -+.++++++|.+|...+- -+.. .+....+.
T Consensus 116 ~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDE-DFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCccccCCH-HHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 889999999999886532222 2333333222 137999999999975421 1111 11111121
Q ss_pred cC--CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 137 FN--IPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 137 ~~--~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.. -|++.++...++|++.+..+++..+..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 11 378888889999999999999998864
No 239
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.72 E-value=1.8e-15 Score=104.80 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCc--cCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------H---HHH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEY--DPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------A---MRD 69 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~---~~~ 69 (191)
++|+++|.+|+|||||+|++++.... ... .+.+..........++.. +.++||||..+.. . ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999988732 221 233333333334455554 7889999955321 1 112
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCcc-------CHHHHHHHHHHcCCCE
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAV-------DMNQAQELAEQFNIPF 141 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~-------~~~~~~~~~~~~~~~~ 141 (191)
......|++++|.++.+... .-...+..+..... ..-.++++|.|++|...... .....+.+.+.++-.+
T Consensus 79 ~~~~g~~~illVi~~~~~t~--~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTE--EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCCcCH--HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22456899999999987221 11222333332211 11248899999999765321 1244566667777777
Q ss_pred EEecc-----CCCCCHHHHHHHHHHHHHh
Q psy11135 142 IKTSA-----KTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 142 ~~~s~-----~~~~~v~~l~~~i~~~~~~ 165 (191)
+..+. ..+.+++++++.|...+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 66654 4567788888888887776
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.71 E-value=6.5e-16 Score=120.55 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CC---------------CCccCC---cc-ceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH--FV---------------DEYDPT---IE-DSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~---------------~~~~~~---~~-~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
-+|+++|+.++|||||+++|+... .. .++.+. .+ ........++...+.+.+|||||+.
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 389999999999999999997422 10 000000 00 0111122344445668999999999
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
++.......+..+|++++|+|+++.-.. ....++.. ....++|+++++||+|+.
T Consensus 91 df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 91 DFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRD 144 (526)
T ss_pred hhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCccc
Confidence 9888777788999999999999874211 12233322 233578999999999974
No 241
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=1.1e-15 Score=117.48 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=96.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC--CC------------------------CccCCc---c-ceEEEEEEEcCeEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VD------------------------EYDPTI---E-DSYRKQVVIDGETA 51 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~------------------------~~~~~~---~-~~~~~~~~~~~~~~ 51 (191)
+.++|+++|+.++|||||+.+|+...- .. +..+.. + +.......+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 357899999999999999999874221 00 000000 0 00011122344455
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCCC-cEEEEEecCCCCCC
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFE-------DIGSYREQIKRVKDAEEV-PMVLVGNKCDLSTW 123 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~ 123 (191)
.+.++|+||+.+|.......+..+|++++|+|+++. .++ .....+.... ..++ ++++++||+|+...
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~----~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF----TLGVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH----HcCCCcEEEEEEcccCCch
Confidence 689999999999998888889999999999999873 121 2222222222 2355 47889999997632
Q ss_pred ccC-------HHHHHHHHHHcC-----CCEEEeccCCCCCHHH
Q psy11135 124 AVD-------MNQAQELAEQFN-----IPFIKTSAKTRMGVDD 154 (191)
Q Consensus 124 ~~~-------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 154 (191)
..+ .++++.+.++.| ++++++|+.+|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 221 344566666666 6799999999999853
No 242
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.7e-16 Score=111.85 Aligned_cols=160 Identities=24% Similarity=0.285 Sum_probs=111.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHH--------HHHhhcccC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSA--------MRDQYMRTG 75 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 75 (191)
|.++|.|++|||||++++...+ -..+|+.|+-......+.+ .+.. +.+-|.||.-+-.+ .+++ ++.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~s--fv~ADIPGLIEGAs~G~GLG~~FLrH-IERt 238 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGES--FVVADIPGLIEGASEGVGLGLRFLRH-IERT 238 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCc--EEEecCcccccccccCCCccHHHHHH-HHhh
Confidence 5689999999999999999776 5677877776544444444 3333 77899999654332 2333 5678
Q ss_pred CEEEEEEeCCChhh---HHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCCC-ccCHHHHHHHHHHcCCC-EEEeccCCC
Q psy11135 76 EGFLLVFAVNSMKS---FEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNIP-FIKTSAKTR 149 (191)
Q Consensus 76 ~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~-~~~~s~~~~ 149 (191)
.++++++|++..+. .+.......++..|. ...+.|.+||+||+|+... +........+.+..+.. ++++|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 89999999987553 455555556665552 3457899999999996542 22222233444444543 223999999
Q ss_pred CCHHHHHHHHHHHHHhhhh
Q psy11135 150 MGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~~~~ 168 (191)
.|++++...+.+.+.+.+.
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999999999988764
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=7.7e-16 Score=117.31 Aligned_cols=147 Identities=20% Similarity=0.139 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCc-----------cCCc--------------c------ceEEEEEEEcCeEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEY-----------DPTI--------------E------DSYRKQVVIDGETA 51 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~-----------~~~~--------------~------~~~~~~~~~~~~~~ 51 (191)
++|+++|+.++|||||+.+|+...- .... ..+. . +.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999974431 1000 0100 0 00011112223334
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC-----
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD----- 126 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----- 126 (191)
.+.++||||++++.......+..+|++++|+|+.....-... +.+..+.. .. ..++++++||+|+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~-~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASL-LG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHH-cC--CCcEEEEEEecccccchHHHHHHH
Confidence 688999999999877666678899999999999764321111 11111211 11 2468999999998752211
Q ss_pred HHHHHHHHHHcC---CCEEEeccCCCCCHHH
Q psy11135 127 MNQAQELAEQFN---IPFIKTSAKTRMGVDD 154 (191)
Q Consensus 127 ~~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 154 (191)
.++...+.+..+ ++++++|+++|+|+++
T Consensus 157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 122233334444 4799999999999875
No 244
>PRK00049 elongation factor Tu; Reviewed
Probab=99.70 E-value=1e-15 Score=116.32 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=97.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC---C--------C------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV---D--------E------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~---~--------~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
+.++|+++|+.++|||||+++|++.... . + ....+.+ .....+......+.++||||+.++
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHHH
Confidence 4789999999999999999999863210 0 0 0011111 112223333445789999999988
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEE-EEEecCCCCCCccC----HHHHHHHHHHc--
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV-LVGNKCDLSTWAVD----MNQAQELAEQF-- 137 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~----~~~~~~~~~~~-- 137 (191)
.......+..+|++++++|+.....- .....+..+.. .+.|.+ +++||+|+...... ..+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 77777778899999999999774221 12233333322 357875 68999998742111 12333344433
Q ss_pred ---CCCEEEeccCCCC----------CHHHHHHHHHHHH
Q psy11135 138 ---NIPFIKTSAKTRM----------GVDDAFYTLVREI 163 (191)
Q Consensus 138 ---~~~~~~~s~~~~~----------~v~~l~~~i~~~~ 163 (191)
+++++++|+.++. ++..++++|.+.+
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3689999999865 4566666666554
No 245
>KOG1145|consensus
Probab=99.70 E-value=8.9e-16 Score=116.27 Aligned_cols=158 Identities=20% Similarity=0.207 Sum_probs=113.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE---EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY---RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
-|.+||+...|||||+.++.+..+.....+...... ....+ ++.. +.|.|||||..|..++.....-.|++++|
T Consensus 155 VVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred eEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 467999999999999999998886655444443332 23233 4544 78899999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHH------HHHcC--CCEEEeccCCCCCH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QEL------AEQFN--IPFIKTSAKTRMGV 152 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~------~~~~~--~~~~~~s~~~~~~v 152 (191)
+.++|.- .....+...+....+.|+++.+||+|..... .+.. +++ .+.+| ++++++||++|.|+
T Consensus 232 VAadDGV-----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl 304 (683)
T KOG1145|consen 232 VAADDGV-----MPQTLEAIKHAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL 304 (683)
T ss_pred EEccCCc-----cHhHHHHHHHHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence 9998832 2222233344566789999999999976522 2222 222 23444 57999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhh
Q psy11135 153 DDAFYTLVREIKKDKMLRGK 172 (191)
Q Consensus 153 ~~l~~~i~~~~~~~~~~~~~ 172 (191)
+.+.++++-...-....-.+
T Consensus 305 ~~L~eaill~Ae~mdLkA~p 324 (683)
T KOG1145|consen 305 DLLEEAILLLAEVMDLKADP 324 (683)
T ss_pred HHHHHHHHHHHHHhhcccCC
Confidence 99999987666544433333
No 246
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=7.9e-16 Score=118.69 Aligned_cols=145 Identities=21% Similarity=0.188 Sum_probs=90.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC------CCCc-----cC---Cccce-EEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF------VDEY-----DP---TIEDS-YRKQVVIDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~------~~~~-----~~---~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (191)
+.++|+++|+.++|||||+++|+.... ...+ .+ ..+.. ......++.....+.++|+||++++..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~ 159 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 159 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence 468999999999999999999985321 0000 00 00000 011112223334578999999999887
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCH----HHHHHHHHHc----
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDM----NQAQELAEQF---- 137 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~----~~~~~~~~~~---- 137 (191)
.....+..+|++++|+|+.+..... ..+.+..+.. .++| +++++||+|+.+.+... ++...+.+..
T Consensus 160 ~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 160 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7777788999999999998643222 2233333322 3567 78899999987522111 2334444443
Q ss_pred -CCCEEEeccCCCCC
Q psy11135 138 -NIPFIKTSAKTRMG 151 (191)
Q Consensus 138 -~~~~~~~s~~~~~~ 151 (191)
.++++++|+.++.+
T Consensus 235 ~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 235 DDIPIISGSALLALE 249 (478)
T ss_pred CcceEEEEEcccccc
Confidence 46799999988753
No 247
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.70 E-value=2e-15 Score=110.87 Aligned_cols=158 Identities=21% Similarity=0.311 Sum_probs=98.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEE---------------------EcC-eEEEEEEEeCCCh-
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVV---------------------IDG-ETALLDILDTAGQ- 61 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g~- 61 (191)
|+++|.++||||||++++++... ...++.++.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57899999999999999998763 34444433221111111 122 3356999999997
Q ss_pred ---hhHHHHHHhh---cccCCEEEEEEeCCCh----------------hhHHHH----HHH--------HHH--------
Q psy11135 62 ---EEYSAMRDQY---MRTGEGFLLVFAVNSM----------------KSFEDI----GSY--------REQ-------- 99 (191)
Q Consensus 62 ---~~~~~~~~~~---~~~~~~~i~v~d~~~~----------------~s~~~~----~~~--------~~~-------- 99 (191)
++...+...+ ++++|++++|+|+... +.++.+ ..| +..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444443 8899999999999631 011111 111 000
Q ss_pred -----------HH--------------h--------------------hcCCCCCcEEEEEecCCCCCCccCHHHHHHHH
Q psy11135 100 -----------IK--------------R--------------------VKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134 (191)
Q Consensus 100 -----------~~--------------~--------------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 134 (191)
+. . .......|+++|+||.|+.... +....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~---~~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE---NNISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH---HHHHHHH
Confidence 00 0 0012346999999999975321 1122232
Q ss_pred HHc-CCCEEEeccCCCCCHHHHHH-HHHHHHHhh
Q psy11135 135 EQF-NIPFIKTSAKTRMGVDDAFY-TLVREIKKD 166 (191)
Q Consensus 135 ~~~-~~~~~~~s~~~~~~v~~l~~-~i~~~~~~~ 166 (191)
... ..+++++||+.+.+++++.+ .+.+.+++.
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 333 45799999999999999998 698888664
No 248
>KOG0462|consensus
Probab=99.70 E-value=2.9e-16 Score=118.80 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=115.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCC----------------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-VDE----------------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
++.++-+...|||||..+|+...- ... .--|...+....++.++..+.+.++|||||.++...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 456788899999999999974331 111 101222222333344577889999999999999999
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHHHHcCCCEEEec
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~s 145 (191)
....+..++++++++|+...-.-.....++..+.. +..+|.|+||+|+...+. -..+..++....+.+.+.+|
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS 216 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS 216 (650)
T ss_pred ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence 99999999999999999885444444444444433 678999999999987332 22334444555566899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhh
Q psy11135 146 AKTRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
|++|.|+++++++|++.+++....
T Consensus 217 AK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 217 AKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred eccCccHHHHHHHHHhhCCCCCCC
Confidence 999999999999999999875443
No 249
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=4.1e-15 Score=107.78 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=85.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----cCCc-----------c-ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEY-----DPTI-----------E-DSYRKQVVIDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~-----~~~~-----------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
+|+++|++|+|||||+++++........ ..++ . ........+....+.+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999754311110 0000 0 000011122223455889999999888888
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEE
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK 143 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 143 (191)
....+..+|++++++|.++....... ..+..+. ..+.|.++++||+|..... ..+...++.+.++.++++
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~~~~p~iivvNK~D~~~~~-~~~~~~~l~~~~~~~~~~ 150 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----EAGIPRIIFINKMDRERAD-FDKTLAALQEAFGRPVVP 150 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECCccCCCC-HHHHHHHHHHHhCCCeEE
Confidence 88889999999999999886544322 2222222 2368999999999987642 233445566666655443
No 250
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=8.7e-16 Score=117.74 Aligned_cols=161 Identities=18% Similarity=0.162 Sum_probs=100.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC---CCCccC--CccceEEEE------------E--EEcC------------e-
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF---VDEYDP--TIEDSYRKQ------------V--VIDG------------E- 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~---~~~~~~--~~~~~~~~~------------~--~~~~------------~- 49 (191)
+.++|.++|+...|||||+.+|.+... ..+... |..-.+... . ..+. .
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 368999999999999999999986432 111000 000000000 0 0000 0
Q ss_pred ---EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135 50 ---TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126 (191)
Q Consensus 50 ---~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 126 (191)
...+.++|+||++.+.......+..+|++++|+|+..........+.+..+.. .. -.++++|+||+|+.+....
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lg--i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MK--LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cC--CCcEEEEEecccccCHHHH
Confidence 13578999999999887777778899999999999873111111222222221 11 2468999999998752221
Q ss_pred H---HHHHHHHHH---cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 127 M---NQAQELAEQ---FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 127 ~---~~~~~~~~~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
. ++...+.+. .+++++++||++|.|++.+++.|...+..
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 1 222222222 25789999999999999999999876654
No 251
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=1.1e-15 Score=118.18 Aligned_cols=150 Identities=19% Similarity=0.135 Sum_probs=91.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCc----------cCCcc--------------------ceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEY----------DPTIE--------------------DSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~----------~~~~~--------------------~~~~~~~~~~~~ 49 (191)
..++|+++|+.++|||||+.+|+... ..... ..++. +.......+...
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 46899999999999999999997543 11100 11110 000111122333
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-CHH
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-DMN 128 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~ 128 (191)
...+.++||||+..+.......+..+|++++|+|+...-.-..... +..... .. ..|+++++||+|+..... ..+
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~-lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATL-LG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHH-hC--CCceEEEEEeeccccchhHHHH
Confidence 4458899999998887665666789999999999976321111111 111111 11 247899999999874211 111
Q ss_pred ----HHHHHHHHcC----CCEEEeccCCCCCHHHH
Q psy11135 129 ----QAQELAEQFN----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 129 ----~~~~~~~~~~----~~~~~~s~~~~~~v~~l 155 (191)
+...+.+..+ ++++++|+++|.|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222333333 67999999999998764
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.68 E-value=1.7e-15 Score=116.21 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=95.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC------CC--C---CCc------cCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN------HF--V---DEY------DPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~------~~--~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
+.++|+++|+.++|||||+++|.+. .. . .+. ...+-+ .....+......+.++||||+.++
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccch
Confidence 4689999999999999999999732 10 0 000 111111 112233344456889999999988
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCHH----HHHHHHHHc--
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDMN----QAQELAEQF-- 137 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~----~~~~~~~~~-- 137 (191)
-.........+|++++++|+.+...- ...+.+..+. ..+.| +++++||+|+.+.....+ +..++...+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 76666667789999999999764221 1122222222 23578 578999999875221111 222333332
Q ss_pred ---CCCEEEeccC---CCCC-------HHHHHHHHHHHHH
Q psy11135 138 ---NIPFIKTSAK---TRMG-------VDDAFYTLVREIK 164 (191)
Q Consensus 138 ---~~~~~~~s~~---~~~~-------v~~l~~~i~~~~~ 164 (191)
.++++++|+. ++.| +.+++++|.+.+.
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888876 4444 6777777776654
No 253
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=2.2e-15 Score=108.67 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-------------CccC------CccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVD-------------EYDP------TIEDSYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~-------------~~~~------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
+|+++|++|+|||||+++++...-.. ++.+ .+-......+.+. ...+.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHH
Confidence 58999999999999999997422100 0000 0001111122233 4558899999999888
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
......++.+|++++|+|..+...-. ....+..+. ..++|+++++||+|+..
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD----RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH----HcCCCEEEEEECCCCCC
Confidence 88888899999999999997743211 122333332 24689999999999875
No 254
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=2e-15 Score=116.01 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=92.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CC------------------------CCccCCcc----ceEEEEEEEcCeEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FV------------------------DEYDPTIE----DSYRKQVVIDGETA 51 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~------------------------~~~~~~~~----~~~~~~~~~~~~~~ 51 (191)
+.++|+++|+.++|||||+.+|+... .. .+..+... +.......+.....
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 46899999999999999999997522 11 00000000 00011122344455
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCc
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---F---EDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWA 124 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 124 (191)
.+.++|+||+.++.......+..+|++++|+|+....- + ....+.+..+. ..++| +++++||+|.....
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~----~~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF----TLGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH----HcCCCeEEEEEEccccccch
Confidence 68999999999998888888899999999999976420 0 11222222222 23555 67999999953211
Q ss_pred c-------CHHHHHHHHHHcC-----CCEEEeccCCCCCHHH
Q psy11135 125 V-------DMNQAQELAEQFN-----IPFIKTSAKTRMGVDD 154 (191)
Q Consensus 125 ~-------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~ 154 (191)
. ..++...+....+ ++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 1222333333333 5799999999999863
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=2.3e-16 Score=105.98 Aligned_cols=115 Identities=23% Similarity=0.403 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHh---hcccCCEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQ---YMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~---~~~~~~~~i~ 80 (191)
.|+++|+.|+|||+|+..|..+.......+. .... .... +.....+.++|+|||.+.+..... +...+.+++|
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 5899999999999999999998655444333 2111 1112 122234789999999987764443 4778999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC
Q psy11135 81 VFAVNS-MKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 81 v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~ 122 (191)
|+|.+. +..+....+++-.+.... .....|++|++||.|+..
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999975 445555555554443322 346789999999999865
No 256
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=4.5e-15 Score=120.21 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=77.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-------------CC-------ccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-------------DE-------YDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
..+|+++|+.|+|||||+++|+...-. .+ +..+.... . ..+......+.+|||||+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~--~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-A--TSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-e--EEEEECCEEEEEEECCCcH
Confidence 358999999999999999999853210 00 00011111 1 1222334568999999999
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
++......+++.+|++++|+|.++.........| ..+.. .++|+++|+||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh----cCCCEEEEEECCCCCC
Confidence 9988889999999999999999886554433333 23322 3689999999999854
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.67 E-value=4.1e-15 Score=119.26 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=91.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC--CCC----------ccCCccceEEE--------------------EEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VDE----------YDPTIEDSYRK--------------------QVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~----------~~~~~~~~~~~--------------------~~~~~~~ 49 (191)
+.++|+++|++++|||||+++|+...- ... ...++.+.+.. ...+...
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 368999999999999999999986541 110 11111111110 1122223
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCH-
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDM- 127 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~- 127 (191)
...+.++||||++++.......+..+|++++|+|+.....-.. ...+..+... ...++++++||+|+... ....
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh---CCCeEEEEEEecccccchhHHHH
Confidence 3357899999998877655666889999999999976422111 1111112221 12578999999998641 1111
Q ss_pred ---HHHHHHHHHcC---CCEEEeccCCCCCHHH
Q psy11135 128 ---NQAQELAEQFN---IPFIKTSAKTRMGVDD 154 (191)
Q Consensus 128 ---~~~~~~~~~~~---~~~~~~s~~~~~~v~~ 154 (191)
.+...+.+.++ ++++++|+++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 12233334555 4699999999999874
No 258
>KOG1191|consensus
Probab=99.66 E-value=2.1e-15 Score=112.96 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=112.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-HHH--------HHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-YSA--------MRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~--------~~~~~ 71 (191)
.++|+++|+||+|||||+|+|...+ +.++..+|+.+.....+.++|.. +.+.||+|..+ ... .-..-
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHHH
Confidence 5789999999999999999999887 67888899999988888888887 77899999765 111 22234
Q ss_pred cccCCEEEEEEeC--CChhhHHHHHHHHHHHHhh-----cCCCCCcEEEEEecCCCCCC--ccCHHHHHHHHHHcC---C
Q psy11135 72 MRTGEGFLLVFAV--NSMKSFEDIGSYREQIKRV-----KDAEEVPMVLVGNKCDLSTW--AVDMNQAQELAEQFN---I 139 (191)
Q Consensus 72 ~~~~~~~i~v~d~--~~~~s~~~~~~~~~~~~~~-----~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~---~ 139 (191)
+..+|++++++|. ++-++-..+...+.....- +...+.|+++++||.|+... ....... .+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~-~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV-VYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce-eccccccCccc
Confidence 6679999999999 3333222222333322211 12245789999999999763 2221111 1111112 2
Q ss_pred C-EEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 140 P-FIKTSAKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 140 ~-~~~~s~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
+ ..++|+.++++++++..++.+.+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 3 4559999999999999999988865443
No 259
>KOG0077|consensus
Probab=99.65 E-value=2.3e-15 Score=97.32 Aligned_cols=154 Identities=18% Similarity=0.250 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
.=|++++|-.++|||||++.|.........+...++ .....+.+-. ++-+|.+|+..-+..|..++..++++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~m~--ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGGMT--FTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecCce--EEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 348999999999999999999876633222111111 1123455555 677999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH---Hc-----------C---CCEEEec
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE---QF-----------N---IPFIKTS 145 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~-----------~---~~~~~~s 145 (191)
|+-+.+.+.+.+..+..+...-.....|+++.+||+|..... +.++.+.... .. + +.++-||
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~-se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcs 174 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA-SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCS 174 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc-cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence 999999999888888777765555689999999999987633 4444322211 11 1 2356688
Q ss_pred cCCCCCHHHHHHHHHH
Q psy11135 146 AKTRMGVDDAFYTLVR 161 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~ 161 (191)
...+.+..+.|.++-.
T Consensus 175 i~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 175 IVRKMGYGEGFKWLSQ 190 (193)
T ss_pred EEccCccceeeeehhh
Confidence 8888777777776544
No 260
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.64 E-value=1.7e-14 Score=108.96 Aligned_cols=82 Identities=22% Similarity=0.290 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEE---------------------Ec-CeEEEEEEEeCCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVV---------------------ID-GETALLDILDTAG 60 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~~D~~g 60 (191)
++|+++|.|++|||||+|+|++.... ..++.++.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999987643 3554444222221111 11 1235689999999
Q ss_pred hh----hHHHHHHhh---cccCCEEEEEEeCC
Q psy11135 61 QE----EYSAMRDQY---MRTGEGFLLVFAVN 85 (191)
Q Consensus 61 ~~----~~~~~~~~~---~~~~~~~i~v~d~~ 85 (191)
.. +...+...+ ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 43 333344444 88999999999996
No 261
>KOG0090|consensus
Probab=99.63 E-value=9.3e-15 Score=98.52 Aligned_cols=114 Identities=19% Similarity=0.334 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcc---cCCEEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMR---TGEGFLLV 81 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i~v 81 (191)
.|+++|+.+||||+|+-.|..+.......+..+. ...+.+.+.. ..++|.|||.+.+.-...++. .+.+++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 5899999999999999999887654444332222 2223334444 788999999998876666666 68888898
Q ss_pred EeCCC-hhhHHHHHHHHHHHHhhc--CCCCCcEEEEEecCCCCC
Q psy11135 82 FAVNS-MKSFEDIGSYREQIKRVK--DAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 82 ~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~ 122 (191)
+|... ........+++-.+.... .....|+++.+||.|+.-
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 88754 444455555555544333 356789999999999854
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.63 E-value=2.6e-14 Score=115.63 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CC-----CC------------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH--FV-----DE------------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
.+|+++|+.++|||||+++|+... .. .. ....+-+.....+.+++ ..+.++||||+.++
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~f 86 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVDF 86 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHHH
Confidence 479999999999999999997532 10 00 11111112222333444 45888999999988
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
.......+..+|++++|+|+.+.-.... ...+..+ ...+.|.++++||+|+..
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~----~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA----DKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCCCCC
Confidence 8788888999999999999987532221 1222222 234689999999999864
No 263
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.62 E-value=8.9e-15 Score=90.32 Aligned_cols=136 Identities=23% Similarity=0.274 Sum_probs=93.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----hhHHHHHHhhcccCCEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----EEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----~~~~~~~~~~~~~~~~~i~ 80 (191)
||+++|..|+|||||.+++.+...- +..|.. +.++++. .+||||. ..+.+........+|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7899999999999999999876631 111111 1222221 3799993 2333344455778999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i 159 (191)
+-.++++++...- .+...-..|+|-|+||.|+.+ .-.....+.+..+.|. ++|++|+.++.|++++++.|
T Consensus 71 v~~and~~s~f~p--------~f~~~~~k~vIgvVTK~DLae-d~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 71 VHAANDPESRFPP--------GFLDIGVKKVIGVVTKADLAE-DADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred eecccCccccCCc--------ccccccccceEEEEecccccc-hHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHH
Confidence 9999998763211 111122457999999999985 2334455667777776 79999999999999999987
Q ss_pred HH
Q psy11135 160 VR 161 (191)
Q Consensus 160 ~~ 161 (191)
..
T Consensus 142 ~~ 143 (148)
T COG4917 142 AS 143 (148)
T ss_pred Hh
Confidence 54
No 264
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.61 E-value=1e-13 Score=96.99 Aligned_cols=160 Identities=15% Similarity=0.188 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCc---cCCccceEEEEEEEcCeEEEEEEEeCCChhhH--------HHH---HH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVIDGETALLDILDTAGQEEY--------SAM---RD 69 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~---~~ 69 (191)
++|+|+|..|+||||++|.+++....... .+.+..........++.. +.++||||..+. ..+ ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999998843222 233333434444667766 788999993321 111 12
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEEecCCCCCCccC--------HHHHHHHHHHcCCC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLSTWAVD--------MNQAQELAEQFNIP 140 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~ 140 (191)
....+.+++++|+.++.... .-...+..+...... --..++||.|..|....... ....+.+.+.++-.
T Consensus 79 ~~~~g~ha~llVi~~~r~t~--~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTE--EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SH--HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcchH--HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 23456899999999984321 111222222221111 12468999999987663321 12355677778888
Q ss_pred EEEeccC------CCCCHHHHHHHHHHHHHhhh
Q psy11135 141 FIKTSAK------TRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 141 ~~~~s~~------~~~~v~~l~~~i~~~~~~~~ 167 (191)
|+.++.. +...+.++++.|-..+.++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 9988877 34568888888888777654
No 265
>KOG1490|consensus
Probab=99.61 E-value=6.5e-15 Score=110.61 Aligned_cols=170 Identities=20% Similarity=0.185 Sum_probs=119.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHH-----HHhhccc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAM-----RDQYMRT 74 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~-----~~~~~~~ 74 (191)
.++++|.|++|||||++.+.... ...+|..|+..-+... ++..-..++++||||..+ .... .....+-
T Consensus 170 TlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL 247 (620)
T KOG1490|consen 170 TLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL 247 (620)
T ss_pred eEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh
Confidence 46899999999999999998766 4566666665444443 333444578899999332 1111 1122233
Q ss_pred CCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHH---HHHHHHHHcCCCEEEeccCC
Q psy11135 75 GEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMN---QAQELAEQFNIPFIKTSAKT 148 (191)
Q Consensus 75 ~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~---~~~~~~~~~~~~~~~~s~~~ 148 (191)
..+++|+.|++... |...-..++..+... ..+.|+|+|+||+|... ...+.+ ..+.+.+.-++++++.|..+
T Consensus 248 raaVLYfmDLSe~CGySva~QvkLfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ 325 (620)
T KOG1490|consen 248 RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQ 325 (620)
T ss_pred hhhheeeeechhhhCCCHHHHHHHHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccc
Confidence 56789999998733 555555555555543 34789999999999977 333332 23455556669999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Q psy11135 149 RMGVDDAFYTLVREIKKDKMLRGKEKKKRG 178 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~ 178 (191)
.+|+-++.......+...+..+.-+++...
T Consensus 326 eegVm~Vrt~ACe~LLa~RVE~Klks~~~~ 355 (620)
T KOG1490|consen 326 EEGVMDVRTTACEALLAARVEQKLKSESRV 355 (620)
T ss_pred hhceeeHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999988877775544
No 266
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.61 E-value=4.8e-14 Score=104.15 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=84.8
Q ss_pred eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135 49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----------KSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (191)
..+.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..+.......+.|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 345688999999999999999999999999999999874 3444445555555544444689999999999
Q ss_pred CCCC------------C-----ccCHHHHHHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 119 DLST------------W-----AVDMNQAQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 119 D~~~------------~-----~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
|+.. + ....+.+..+... ..+..+.++|.+..++..+|+++...+....
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9632 0 1123333332211 1244667888899999999999888877644
No 267
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=2.7e-14 Score=111.60 Aligned_cols=114 Identities=15% Similarity=0.199 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CCC---Cc-c----CCcc-----------ceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH--FVD---EY-D----PTIE-----------DSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~--~~~---~~-~----~~~~-----------~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
-+|+++|++++|||||+++++... ... .. . .+.. ........++...+.+.+|||||+.
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 489999999999999999986322 110 00 0 0000 0111223345556678999999999
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
++.......+..+|++++|+|.++.-. .....++.... ..+.|+++++||+|+..
T Consensus 92 df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~----~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 92 DFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTR----LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHH----hcCCCEEEEEECccccC
Confidence 888777777899999999999987321 12233333222 24689999999999864
No 268
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.60 E-value=7.3e-14 Score=113.10 Aligned_cols=137 Identities=15% Similarity=0.124 Sum_probs=86.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-----Cc--------------cCCccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVD-----EY--------------DPTIEDSYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
+|+++|++++|||||+++|....-.. .. .+++-......+.++ .+.+.+|||||+.++.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVDFT 89 (689)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcchh
Confidence 79999999999999999997432110 00 011111112223333 3458899999999887
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC----E
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP----F 141 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~----~ 141 (191)
......++.+|++++|+|+.+....... .++..+. ..+.|+++++||+|+.... ..+...++.+.++.. .
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~~~~~~~~ 163 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLGANAVPIQ 163 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEECCCCCCCC-HHHHHHHHHHHhCCCceeEE
Confidence 7788889999999999999875433322 2222222 2368999999999987633 223344555554431 3
Q ss_pred EEeccCCC
Q psy11135 142 IKTSAKTR 149 (191)
Q Consensus 142 ~~~s~~~~ 149 (191)
+++|+..+
T Consensus 164 ipis~~~~ 171 (689)
T TIGR00484 164 LPIGAEDN 171 (689)
T ss_pred eccccCCC
Confidence 44554443
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.60 E-value=2.4e-13 Score=106.08 Aligned_cols=107 Identities=26% Similarity=0.288 Sum_probs=70.7
Q ss_pred EEEEEeCCChhhH-----HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-cc
Q psy11135 52 LLDILDTAGQEEY-----SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AV 125 (191)
Q Consensus 52 ~~~~~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~ 125 (191)
.+.++||||.+.. .......+..+|++++++|..+.-+... ....+.+... ....|+++|+||+|+.+. ..
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCcccc
Confidence 5788999997642 2233446889999999999987433222 1223333331 112599999999998642 22
Q ss_pred CHHHHHHHHH----HcC---CCEEEeccCCCCCHHHHHHHHHH
Q psy11135 126 DMNQAQELAE----QFN---IPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 126 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
..+....+.+ ..+ ..+|++||+.|.|++.+++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2444444432 122 36999999999999999999877
No 270
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=1.3e-13 Score=111.55 Aligned_cols=111 Identities=17% Similarity=0.195 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--C-----CCC------------ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--F-----VDE------------YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~-----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
+|+++|++++|||||+++|+... . ... ....+-+.....+.+.+ ..+.++||||+.++.
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~f~ 89 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVDFT 89 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHHHH
Confidence 89999999999999999997422 1 000 11111112222333444 458889999998887
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
......+..+|++++|+|+...-.... ...+..+. ..+.|.++++||+|+..
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~----~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD----KYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH----HcCCCEEEEEECCCCCC
Confidence 767777889999999999876432222 22222222 34679999999999853
No 271
>KOG1532|consensus
Probab=99.57 E-value=7.6e-15 Score=102.72 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=69.8
Q ss_pred EEEEEEeCCChhh------HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHH--HhhcCCCCCcEEEEEecCCCCC
Q psy11135 51 ALLDILDTAGQEE------YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI--KRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 51 ~~~~~~D~~g~~~------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
+...++|||||-+ ...+....++.....+++|-++.+.+-.....+-+.+ .+.....+.|+|+|.||+|+.+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d 195 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSD 195 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccc
Confidence 4578899999764 1223333344444444444444333332333332222 2333446799999999999977
Q ss_pred CccCHH---HHHHH---HHH---------------------cCCCEEEeccCCCCCHHHHHHHHHHHHHhhhhh
Q psy11135 123 WAVDMN---QAQEL---AEQ---------------------FNIPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 123 ~~~~~~---~~~~~---~~~---------------------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
..+..+ +.+.| ..+ .++..+-||+.+|.|.+++|.++...+.+....
T Consensus 196 ~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 196 SEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 333211 11111 110 046688999999999999999999888654433
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.56 E-value=1.8e-13 Score=97.47 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=71.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH----------HHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA----------MRD 69 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~ 69 (191)
.+++|+|+|.+|+|||||+|+|++.... ....+++..........++. .+.+|||||..+... ...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~--~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGF--KLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 3689999999999999999999987632 23333433333333344444 478999999654410 112
Q ss_pred hhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCC
Q psy11135 70 QYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLST 122 (191)
Q Consensus 70 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 122 (191)
.++. ..++++++..++....-..-...++.+..... .--.++++|.||+|...
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 2232 47888888766543211111233333332111 11247999999999865
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.56 E-value=3e-13 Score=109.49 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=70.9
Q ss_pred EcCCCCCHHHHHHHHHhCCCC--C--Ccc-C-Cccc-----------eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhh
Q psy11135 9 VGAGGVGKSALTIQLIQNHFV--D--EYD-P-TIED-----------SYRKQVVIDGETALLDILDTAGQEEYSAMRDQY 71 (191)
Q Consensus 9 ~G~~~~GKStli~~l~~~~~~--~--~~~-~-~~~~-----------~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 71 (191)
+|+.++|||||+++|....-. . ... . +..+ .......+....+.+.+|||||+.++.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999643311 0 000 0 0000 001111222234568999999999888878888
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
+..+|++++++|.++....... ..+..+. ..+.|+++|+||+|...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~-~~~~~~~----~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE-TVWRQAE----KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH-HHHHHHH----HcCCCEEEEEECCCCCC
Confidence 9999999999999886544333 2222222 23689999999999853
No 274
>KOG3905|consensus
Probab=99.56 E-value=2.2e-13 Score=97.69 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=111.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccC----CEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTG----EGFL 79 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~----~~~i 79 (191)
-+|+|+|..|+||||||.+|-+.+.......-........-...+....+.+|-..|......++...+... -.+|
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi 132 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI 132 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence 468999999999999999998877322211111111111112223345577898889877777777665543 4578
Q ss_pred EEEeCCChhh-HHHHHHHHHHHHhhcC-----------------------------------------------------
Q psy11135 80 LVFAVNSMKS-FEDIGSYREQIKRVKD----------------------------------------------------- 105 (191)
Q Consensus 80 ~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------------- 105 (191)
++.+++++.. ++.+..|..-+...+.
T Consensus 133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL 212 (473)
T KOG3905|consen 133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL 212 (473)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence 8999999965 4566777655543311
Q ss_pred -------CCCCcEEEEEecCCCCC-----CccC-------HHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 106 -------AEEVPMVLVGNKCDLST-----WAVD-------MNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 106 -------~~~~p~ivv~nK~D~~~-----~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.-++|++||+||+|... .++. ...++.|+-.+|...+++|+++.-|++-++.+|.+...-
T Consensus 213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 11449999999999833 2222 223567888999999999999999999999999988754
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.56 E-value=3.3e-13 Score=97.71 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=69.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH-------HHhhc
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM-------RDQYM 72 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~ 72 (191)
.+++|+++|.+|+||||++|+|++... .+...+.+..........++ ..+.++||||..+.... ...++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 478999999999999999999998773 23333322222222223344 45899999996643221 11111
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC
Q psy11135 73 --RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~ 122 (191)
...|++++|..++....-..-...++.+.... ..--.+.++|.|+.|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 25899999966543211111122222232211 111247899999999764
No 276
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=1.4e-13 Score=103.12 Aligned_cols=155 Identities=25% Similarity=0.303 Sum_probs=111.8
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCC-----------------ccCCcc-ceEEEEEE-EcCeEEEEEEEeCCChhhHHHH
Q psy11135 7 VVVGAGGVGKSALTIQLIQNHFVDE-----------------YDPTIE-DSYRKQVV-IDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~~~~~-----------------~~~~~~-~~~~~~~~-~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
.++-+-..|||||..|+......-+ .--|.. ......+. -++..|.+.++|||||-++.-.
T Consensus 13 sIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYE 92 (603)
T COG0481 13 SIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE 92 (603)
T ss_pred EEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEE
Confidence 4567788999999999975431110 000111 11112222 2568899999999999998877
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---CEEEe
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---PFIKT 144 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~ 144 (191)
....+..|.+.++++|++..-.-..+...+..+.. +.-++-|+||+|+...+ .....+++.+-.|+ ..+.+
T Consensus 93 VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Ad-pervk~eIe~~iGid~~dav~~ 166 (603)
T COG0481 93 VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAAD-PERVKQEIEDIIGIDASDAVLV 166 (603)
T ss_pred ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCC-HHHHHHHHHHHhCCCcchheeE
Confidence 77778999999999999885444445555555544 67889999999998633 33445667777776 47899
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 145 SAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
||++|.|+++++++|++.++...
T Consensus 167 SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 167 SAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred ecccCCCHHHHHHHHHhhCCCCC
Confidence 99999999999999999987654
No 277
>PRK13768 GTPase; Provisional
Probab=99.53 E-value=1.2e-13 Score=99.00 Aligned_cols=112 Identities=19% Similarity=0.128 Sum_probs=69.9
Q ss_pred EEEEEeCCChhhHH---HHHHhh---ccc--CCEEEEEEeCCChhhHHHHH--HHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 52 LLDILDTAGQEEYS---AMRDQY---MRT--GEGFLLVFAVNSMKSFEDIG--SYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 52 ~~~~~D~~g~~~~~---~~~~~~---~~~--~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
.+.+||+||+.+.. ..+..+ +.. .+++++++|........... .++...... ..+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 47899999987643 222222 222 78999999996644332222 122211111 1368999999999987
Q ss_pred CCccCHHHHH---------------------------HHHHHcC--CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 122 TWAVDMNQAQ---------------------------ELAEQFN--IPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 122 ~~~~~~~~~~---------------------------~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.......... +..++.+ .+++++|++++.|+++++++|.+.+..
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 6321111111 1122334 578999999999999999999887743
No 278
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.53 E-value=4.8e-13 Score=99.67 Aligned_cols=118 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----------KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
..+.+||++|+...+..|..++.+++++++|+|+++- ..+......+..+.......+.|+++++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4578999999999999999999999999999999873 245555555555555444567999999999997
Q ss_pred CCC------------c----cCHHHHHHHHH-----Hc------CCCEEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 121 STW------------A----VDMNQAQELAE-----QF------NIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 121 ~~~------------~----~~~~~~~~~~~-----~~------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
... + .+.+.+..+.. .. .+..+.++|.+..++..+|+.+...+.....
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l 338 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNL 338 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHH
Confidence 320 1 12233322211 11 1445678889999999999988888776543
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.52 E-value=9.6e-13 Score=108.97 Aligned_cols=143 Identities=22% Similarity=0.299 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHhCCCCCCccCCccceEEE-EEEEcC----------------eEEEEEEEeCCChhhHHHHHHhhcccCC
Q psy11135 14 VGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDG----------------ETALLDILDTAGQEEYSAMRDQYMRTGE 76 (191)
Q Consensus 14 ~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (191)
++||||+.++.+...+....+....+... .++.+. ....+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 45999999999888655444433332221 112221 0113789999999999888888888899
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-CH------------HH-HHHH------
Q psy11135 77 GFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV-DM------------NQ-AQEL------ 133 (191)
Q Consensus 77 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~------------~~-~~~~------ 133 (191)
++++|+|+++ +.+.+.+. .+.. .+.|+++|+||+|+..... .. +. ..++
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999987 33333332 2222 2579999999999864211 00 00 1111
Q ss_pred -----HH------------Hc--CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 134 -----AE------------QF--NIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 134 -----~~------------~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
+. .+ .++++++||++|+|+++++..|.....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11 11 257999999999999999988765443
No 280
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8e-13 Score=97.66 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=94.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------CccC----------Ccc------ceEEEEEEEcCeEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD------------EYDP----------TIE------DSYRKQVVIDGETAL 52 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~------------~~~~----------~~~------~~~~~~~~~~~~~~~ 52 (191)
-++++|+|+..+|||||+-+|+-.. +.. .... +.. +.......+....+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 5789999999999999999986432 110 0000 000 111112334455567
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhH-----HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccC
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSF-----EDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVD 126 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~ 126 (191)
+.++|+||+.++-.-.-.....+|+.++|+|..+.+-- ......-..+.+... -..+||++||+|+.+ .+..
T Consensus 87 ~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 87 FTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred EEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEcccccccCHHH
Confidence 99999999888887777778899999999999886411 111111111222222 246899999999987 1111
Q ss_pred HH----HHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135 127 MN----QAQELAEQFN-----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 127 ~~----~~~~~~~~~~-----~~~~~~s~~~~~~v~~l 155 (191)
.+ +...+.+..| ++|+++|+..|.|+.+.
T Consensus 165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 11 1233455555 46999999999987543
No 281
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.49 E-value=7.5e-13 Score=97.56 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=65.6
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ 129 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 129 (191)
.+.+.++||+|....... ....+|.++++.+....+.+.... ..+.. ..-++|+||+|+.........
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~ 215 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRA 215 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHH
Confidence 456889999996633322 455799999886543333332222 11222 223899999998763322222
Q ss_pred HHHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 130 AQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 130 ~~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
..++... +..+++.+|+.++.|++++++.|.+.+.
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222222 3368999999999999999999998764
No 282
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.49 E-value=1.6e-13 Score=101.80 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--C-C---CccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH-----Hhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--V-D---EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR-----DQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----~~~ 71 (191)
.++|+|+|.+|+|||||||+|.+-.. . . +...|+.+...+. ....-.+.+||.||........ ...
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~---~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP---HPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE----SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC---CCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 68999999999999999999975321 1 1 1112222222221 1222237789999965332222 223
Q ss_pred cccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCC--------CCccCHHHH-HH---HHH---
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLS--------TWAVDMNQA-QE---LAE--- 135 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~--------~~~~~~~~~-~~---~~~--- 135 (191)
+..-|.+|++.+- . +.... .....+.. .+.|+++|-||+|.. +.....++. ++ .+.
T Consensus 112 ~~~yD~fiii~s~-r---f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 112 FYRYDFFIIISSE-R---FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp GGG-SEEEEEESS-S-----HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC-C---CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 6668887776643 2 22222 22333333 378999999999961 122232221 12 111
Q ss_pred -HcC---CCEEEeccCC--CCCHHHHHHHHHHHHHhhhhh
Q psy11135 136 -QFN---IPFIKTSAKT--RMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 136 -~~~---~~~~~~s~~~--~~~v~~l~~~i~~~~~~~~~~ 169 (191)
+.| .++|.+|+.+ .++...+.+.|...+...+..
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 123 3689999886 456888999998888776544
No 283
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.49 E-value=1.6e-14 Score=102.24 Aligned_cols=111 Identities=21% Similarity=0.150 Sum_probs=57.3
Q ss_pred EEEEEeCCChhhHHHHHHhhc--------ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 52 LLDILDTAGQEEYSAMRDQYM--------RTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
.+.++|||||.+....+.... ...-++++++|.....+.... ..++..+.. ....+.|.+.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 477899999998665444332 345677888887654332222 222222211 1113689999999999976
Q ss_pred Cc--cC------------------HHHHHHHHHH---cC-C-CEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 123 WA--VD------------------MNQAQELAEQ---FN-I-PFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 123 ~~--~~------------------~~~~~~~~~~---~~-~-~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
.. .. .....+++.- ++ . .++++|+.+++++++++..|.+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 21 00 0001112221 13 3 799999999999999999988765
No 284
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.48 E-value=2.2e-12 Score=99.02 Aligned_cols=163 Identities=16% Similarity=0.198 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEE--cCeEEEEEEEeCCChhhHHHHHHhhccc----C
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI--DGETALLDILDTAGQEEYSAMRDQYMRT----G 75 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~ 75 (191)
+-.|+|+|..++|||||+.+|.+.+.. .++..-.| ...... .+....+.+|...|...+..+....+.. -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e~~---~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIEDP---KKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccCCC---CCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 347999999999999999999765532 22222222 111111 1233467899998876777776665543 2
Q ss_pred CEEEEEEeCCChhhH-HHHHHHHHHHHhhc-------------------------C------------------------
Q psy11135 76 EGFLLVFAVNSMKSF-EDIGSYREQIKRVK-------------------------D------------------------ 105 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~-------------------------~------------------------ 105 (191)
-.+++|.|++.|..+ +.+..|+..+.... +
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 467899999998864 34555543332220 0
Q ss_pred ------------CCCCcEEEEEecCCCCC---Cc---------cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 106 ------------AEEVPMVLVGNKCDLST---WA---------VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 106 ------------~~~~p~ivv~nK~D~~~---~~---------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
.-++|++||++|+|... ++ +..+.++.++-.+|+.++++|++...+++.++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 01359999999999743 11 2223367788899999999999999999999999999
Q ss_pred HHHhhhh
Q psy11135 162 EIKKDKM 168 (191)
Q Consensus 162 ~~~~~~~ 168 (191)
.+.....
T Consensus 262 ~l~~~~f 268 (472)
T PF05783_consen 262 RLYGFPF 268 (472)
T ss_pred HhccCCC
Confidence 8875443
No 285
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.47 E-value=1.1e-12 Score=93.60 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=75.3
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcCCC
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFNIP 140 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~ 140 (191)
++..+.+.+++++|++++|||++++. ++..+..|+..+.. .++|+++|+||+|+.+.. +..+....+ ...+++
T Consensus 25 R~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 25 RKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred ccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 56777778899999999999999877 89999998875543 478999999999997532 222334444 457899
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q psy11135 141 FIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 141 ~~~~s~~~~~~v~~l~~~i~~ 161 (191)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999988763
No 286
>PTZ00258 GTP-binding protein; Provisional
Probab=99.47 E-value=3.9e-12 Score=95.50 Aligned_cols=83 Identities=25% Similarity=0.248 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhH--
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEY-- 64 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~-- 64 (191)
.++|+++|.|++|||||+|+|.+.. ...+++.++.+.......+.+. ...+.++|+||...-
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 4689999999999999999998766 4456666664444444444322 234889999995421
Q ss_pred --HH---HHHhhcccCCEEEEEEeCC
Q psy11135 65 --SA---MRDQYMRTGEGFLLVFAVN 85 (191)
Q Consensus 65 --~~---~~~~~~~~~~~~i~v~d~~ 85 (191)
.. ..-..++.+|++++|+|..
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 11 1223367799999999973
No 287
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.45 E-value=1.3e-11 Score=91.67 Aligned_cols=82 Identities=21% Similarity=0.175 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeE---------------EEEEEEeCCChhhH---
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGET---------------ALLDILDTAGQEEY--- 64 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~--- 64 (191)
++|+++|.|++|||||+|++++.. ...+++.++.+.......+.+.. ..+.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999877 34556666544443334443321 24889999995421
Q ss_pred -HHH---HHhhcccCCEEEEEEeCC
Q psy11135 65 -SAM---RDQYMRTGEGFLLVFAVN 85 (191)
Q Consensus 65 -~~~---~~~~~~~~~~~i~v~d~~ 85 (191)
..+ .-..++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112 222367899999999984
No 288
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.45 E-value=2.9e-12 Score=90.44 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=79.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
...|+++|.+|+|||||++.+.+...........+. .. . .......+.++||||.. .... ...+.+|++++++
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~--i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllvi 111 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT--V-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLI 111 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE--E-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEE
Confidence 467899999999999999999875321111111111 11 1 11233447889999864 2222 3367899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEecCCCCCCccCHHH----HHH-HHHH--cCCCEEEeccCCCCC
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGNKCDLSTWAVDMNQ----AQE-LAEQ--FNIPFIKTSAKTRMG 151 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~~~----~~~-~~~~--~~~~~~~~s~~~~~~ 151 (191)
|.+....... ...+..+.. .+.|. ++|+||+|+.+.....++ ++. +..+ .+.+++++|++++..
T Consensus 112 Da~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 112 DASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred ecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9976433221 222222322 34674 559999998642211111 111 2222 236899999998744
No 289
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.45 E-value=1.1e-12 Score=106.67 Aligned_cols=114 Identities=22% Similarity=0.236 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-----------CCCccC-------Cccce-EEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-----------VDEYDP-------TIEDS-YRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-----------~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
-+|+++|+.++|||||+++++...- ..++.+ |.... ......+++..+.+.+|||||+.++
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f 99 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDF 99 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcccc
Confidence 4899999999999999999975310 011111 11111 1112235666778999999999998
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
.......+..+|++++|+|+...-..... ..+.... ..+.|.++++||+|...
T Consensus 100 ~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 100 GGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred HHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH----HcCCCEEEEEEChhccc
Confidence 88788889999999999999773222211 1222221 23578899999999864
No 290
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.42 E-value=8.4e-12 Score=93.05 Aligned_cols=156 Identities=13% Similarity=0.155 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC----C-------------CCCCccC---CccceEE-----E-EEEEcCeEEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN----H-------------FVDEYDP---TIEDSYR-----K-QVVIDGETALLDIL 56 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~----~-------------~~~~~~~---~~~~~~~-----~-~~~~~~~~~~~~~~ 56 (191)
++-|.|+|+.++|||||++++.+. . .+.+..+ ++.+... . ....++....+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 467899999999999999999876 2 2223333 2222211 1 11234555678999
Q ss_pred eCCChhh--------HHH---------------------HHHhhcc-cCCEEEEEE-eCCC----hhhHHH-HHHHHHHH
Q psy11135 57 DTAGQEE--------YSA---------------------MRDQYMR-TGEGFLLVF-AVNS----MKSFED-IGSYREQI 100 (191)
Q Consensus 57 D~~g~~~--------~~~---------------------~~~~~~~-~~~~~i~v~-d~~~----~~s~~~-~~~~~~~~ 100 (191)
||+|-.. ... =+...+. .++..+++. |.+- ++.+.. -..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 9999221 111 0334455 788888887 6631 122222 23444455
Q ss_pred HhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC--CCCCHHHHHHHHHHHH
Q psy11135 101 KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK--TRMGVDDAFYTLVREI 163 (191)
Q Consensus 101 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~v~~l~~~i~~~~ 163 (191)
.. .++|+++|+|+.|-.... ..+....+..+++++++.+|.. +..++..+++.++..+
T Consensus 177 k~----~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 177 KE----LNKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred Hh----cCCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 44 478999999999943222 4445567778889998877755 4556666666665544
No 291
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=1.4e-11 Score=100.41 Aligned_cols=113 Identities=23% Similarity=0.281 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CCC---------ccC-------Cccc-eEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF--VDE---------YDP-------TIED-SYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~~---------~~~-------~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
+|+++|+.++|||||+.+|+...- ... +.+ |... .....+..++..+.+.++||||+.++.
T Consensus 22 ni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~ 101 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG 101 (731)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChH
Confidence 699999999999999999985431 110 000 0000 001111234456678999999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
......++.+|++++|+|+...-... ....+..... .+.|.++++||+|...
T Consensus 102 ~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 102 GDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 88888899999999999987743222 2222222222 2467899999999763
No 292
>KOG1486|consensus
Probab=99.41 E-value=1.7e-11 Score=85.22 Aligned_cols=157 Identities=21% Similarity=0.296 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH-------HhhcccC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR-------DQYMRTG 75 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~~ 75 (191)
-+|+++|.|++|||||+..+...+ -..+|..|+.+.......+++.. +++.|.||.-+-.+.. -...+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArta 140 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVARTA 140 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeecc
Confidence 489999999999999999998776 56677778778777778888888 8889999966544322 2345679
Q ss_pred CEEEEEEeCCChhhHHHH-HHHHHHHH-hhc-CCCC--------------------------------------------
Q psy11135 76 EGFLLVFAVNSMKSFEDI-GSYREQIK-RVK-DAEE-------------------------------------------- 108 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~-~~~~~~~~-~~~-~~~~-------------------------------------------- 108 (191)
|.++.+.|++..+.-..+ ...+..+- +.+ ..++
T Consensus 141 DlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~R 220 (364)
T KOG1486|consen 141 DLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFR 220 (364)
T ss_pred cEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEe
Confidence 999999999887654422 22222221 111 0111
Q ss_pred ------------------CcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 109 ------------------VPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 109 ------------------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
++.+.|-||+| .++.++...++++.+- +.+|..-..|++.+++.|.+.+.-.+.
T Consensus 221 eD~t~DdfIDvi~gnr~Y~~ClYvYnKID----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~rv 292 (364)
T KOG1486|consen 221 EDCTVDDFIDVIEGNRVYIKCLYVYNKID----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLVRV 292 (364)
T ss_pred cCCChHHHHHHHhccceEEEEEEEeeccc----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceEEE
Confidence 15677778888 4577888888887765 445777888999999999998875443
No 293
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.40 E-value=5.2e-13 Score=85.58 Aligned_cols=113 Identities=22% Similarity=0.264 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
+||+++|..|+|||+|+.++....+...+. ++.. +......+.+..+.++.+|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 589999999999999999997666643322 2222 2222345577889999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
+.++.+++..+ |...+.... ..+.|.++++||.|+.. ..+..++ +.+++++|++++.|+.
T Consensus 55 ~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~--------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 55 RVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEE--------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHH--------HHHHHHHhCCCcchhh
Confidence 99999988765 665554433 34688999999999743 2223222 2345677888888874
No 294
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.40 E-value=5.6e-12 Score=87.18 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=62.1
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQ 129 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~ 129 (191)
....++++.|..-...... .-++.++.++|+.+.++... ....++ ...-++++||+|+.+. ....+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 3455677777322111111 12577899999988655221 111111 1123899999999752 223333
Q ss_pred HHHHHHH--cCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 130 AQELAEQ--FNIPFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 130 ~~~~~~~--~~~~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
..+..+. .+.+++++|+++|+|+++++++|.+.+
T Consensus 160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444443 457999999999999999999988654
No 295
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=6.1e-12 Score=94.27 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=106.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCCCc-----cC-------Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--FVDEY-----DP-------TIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~-----~~-------~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
+|+++-+...|||||+..|+... +.... .. .-+ +...+..-+....+.+.++|||||.++....+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 68999999999999999998654 22110 00 000 11122233444556799999999999999999
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc--cCHHHHHHHH-------HHcCCC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA--VDMNQAQELA-------EQFNIP 140 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~-------~~~~~~ 140 (191)
..+.-.|++++++|+.+..... .+..++.... .+.+-|+|+||+|....+ .-.++.-++. +++..|
T Consensus 87 Rvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP 161 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP 161 (603)
T ss_pred hhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence 9999999999999998743221 2333333333 356779999999987622 1122222332 245678
Q ss_pred EEEeccCCCC----------CHHHHHHHHHHHHHhhh
Q psy11135 141 FIKTSAKTRM----------GVDDAFYTLVREIKKDK 167 (191)
Q Consensus 141 ~~~~s~~~~~----------~v~~l~~~i~~~~~~~~ 167 (191)
+++.|++.|. ++..+|+.|++.++...
T Consensus 162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 162 IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 9999988664 68999999998887644
No 296
>KOG0082|consensus
Probab=99.38 E-value=2e-11 Score=89.71 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=85.0
Q ss_pred EEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh----------HHHHHHHHHHHHhhcCCCCCcEEE
Q psy11135 44 VVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS----------FEDIGSYREQIKRVKDAEEVPMVL 113 (191)
Q Consensus 44 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~p~iv 113 (191)
+.+.+ ..+.++|++||...+.-|.+++.+++++++|.++++-+. +.+...++..+.......+.++|+
T Consensus 190 F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 190 FTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 34444 448899999999999999999999999999999977321 122233444444444456799999
Q ss_pred EEecCCCCC----------------CccCHHHHHHHH-----HHc-----CCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 114 VGNKCDLST----------------WAVDMNQAQELA-----EQF-----NIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 114 v~nK~D~~~----------------~~~~~~~~~~~~-----~~~-----~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
++||.|+-. ..-..+++..+. +.+ .+.++.+.|.+..+|+.+|++....+..+.
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 999999832 011223332221 111 244666788999999999999988887755
Q ss_pred hh
Q psy11135 168 ML 169 (191)
Q Consensus 168 ~~ 169 (191)
..
T Consensus 348 lk 349 (354)
T KOG0082|consen 348 LK 349 (354)
T ss_pred HH
Confidence 43
No 297
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.6e-12 Score=90.80 Aligned_cols=163 Identities=21% Similarity=0.215 Sum_probs=104.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------CccCC--------cc-ceEEEEEEEc------CeEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-------------EYDPT--------IE-DSYRKQVVID------GETALL 53 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-------------~~~~~--------~~-~~~~~~~~~~------~~~~~~ 53 (191)
++++|.++|+...|||||..+|.+.--.. .|..+ .. ..+.....+. .-.-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 48999999999999999999996532100 00000 00 0111111111 112357
Q ss_pred EEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHH
Q psy11135 54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQA 130 (191)
Q Consensus 54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~ 130 (191)
.|+|.|||+-.-++.-....-.|+.+++++++.+.--....+-+..+ .... -..++++-||+|+..++. ..++.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig--ik~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIG--IKNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence 89999999987766666666789999999998843222222222222 1111 247899999999987433 23334
Q ss_pred HHHHHH---cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 131 QELAEQ---FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 131 ~~~~~~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
++|.+. -+.|++++||.++.|++.++++|...+....
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 444442 2579999999999999999999999887543
No 298
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.38 E-value=9.7e-12 Score=84.00 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=70.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEE---------------------------------------
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVV--------------------------------------- 45 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~--------------------------------------- 45 (191)
|+|+|..++|||||+|+|++.. .+....+++.........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987 343333333211111000
Q ss_pred ---------------EcCeEEEEEEEeCCChhh----HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy11135 46 ---------------IDGETALLDILDTAGQEE----YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA 106 (191)
Q Consensus 46 ---------------~~~~~~~~~~~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 106 (191)
.......+.|+||||... .......++..+|++++|.+.++..+-.....+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---- 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---- 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----
Confidence 000111478999999643 235677778999999999999986554444444444433
Q ss_pred CCCcEEEEEecC
Q psy11135 107 EEVPMVLVGNKC 118 (191)
Q Consensus 107 ~~~p~ivv~nK~ 118 (191)
....+++|.||+
T Consensus 157 ~~~~~i~V~nk~ 168 (168)
T PF00350_consen 157 DKSRTIFVLNKA 168 (168)
T ss_dssp TCSSEEEEEE-G
T ss_pred CCCeEEEEEcCC
Confidence 234589999984
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=5.9e-12 Score=103.72 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCcc------------ceE---EEEEEEc--------CeEEEEEEEeCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIE------------DSY---RKQVVID--------GETALLDILDTA 59 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~------------~~~---~~~~~~~--------~~~~~~~~~D~~ 59 (191)
+|+++|+.++|||||+++|+...- .......+. ... .....++ +..+.+.++|||
T Consensus 21 ni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtP 100 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSP 100 (836)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCC
Confidence 899999999999999999986431 111110000 000 0111222 225568899999
Q ss_pred ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
|+.++.......++.+|++++|+|+.+.-... ....+..+. ..+.|.++++||+|+.
T Consensus 101 G~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 101 GHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQAL----QERIRPVLFINKVDRA 157 (836)
T ss_pred CHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHH----HcCCCEEEEEEChhhh
Confidence 99999888888899999999999998743222 122333333 2368999999999986
No 300
>KOG3886|consensus
Probab=99.36 E-value=3.8e-12 Score=87.18 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=97.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-----HHHHhhcccCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-----AMRDQYMRTGE 76 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~ 76 (191)
=||+++|..|+|||++=..++..-.+ ....+.+-+.......+-|. ..+.+||++|++.+- ......+++.+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 48999999999999985555533322 22222222333333333332 347899999998532 24446688999
Q ss_pred EEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH-------HHHHHHHcCCCEEEecc
Q psy11135 77 GFLLVFAVNSMKSFEDI---GSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ-------AQELAEQFNIPFIKTSA 146 (191)
Q Consensus 77 ~~i~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-------~~~~~~~~~~~~~~~s~ 146 (191)
+++++||++..+--..+ .+.++.+.. ..+...+++.++|+|+......... ...+.+.+++.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999887644444 444444544 3567889999999999873322222 22233344566777775
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy11135 147 KTRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 147 ~~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
.+ +.+-..|..+...+.+....
T Consensus 162 wD-etl~KAWS~iv~~lipn~~~ 183 (295)
T KOG3886|consen 162 WD-ETLYKAWSSIVYNLIPNVSA 183 (295)
T ss_pred hh-HHHHHHHHHHHHhhCCChHH
Confidence 44 33344455555555444333
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=5.2e-12 Score=104.22 Aligned_cols=113 Identities=22% Similarity=0.259 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCcc------------ceE---EEEEEE--------------cCeEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIE------------DSY---RKQVVI--------------DGETAL 52 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~------------~~~---~~~~~~--------------~~~~~~ 52 (191)
-+|+++|+.++|||||+.+|+...- .......+. ... .....+ .+..+.
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYL 99 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceE
Confidence 3799999999999999999985441 110000000 000 011111 223566
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
+.++||||+.++.......++.+|++++|+|+...-.... ...+... ...++|.++++||+|..
T Consensus 100 inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 100 INLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQA----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred EEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHH----HHCCCCEEEEEECCccc
Confidence 8999999999998888888999999999999987432222 2222222 33478999999999987
No 302
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.36 E-value=3.3e-11 Score=87.40 Aligned_cols=135 Identities=19% Similarity=0.307 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc---c-------CCcc-ceEEEEEEEcCeEEEEEEEeCCChh---------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY---D-------PTIE-DSYRKQVVIDGETALLDILDTAGQE--------- 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~---~-------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~--------- 62 (191)
.++|+|+|..|+|||||||.|++....... . .+.. ........-++..+.+.++||||..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999987743321 1 1111 1122233446777889999999911
Q ss_pred ---------hHHHHHHh---------hcccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 63 ---------EYSAMRDQ---------YMRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 63 ---------~~~~~~~~---------~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.+...... .-...|+++++++.+... +..+ ...++.+.. ..++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls~-----~vNvIPvIaKaD~l-- 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLSK-----RVNVIPVIAKADTL-- 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHTT-----TSEEEEEESTGGGS--
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhcc-----cccEEeEEeccccc--
Confidence 11111110 011268888888875421 1111 123333333 47899999999975
Q ss_pred ccCHHHHHHH-------HHHcCCCEEEeccC
Q psy11135 124 AVDMNQAQEL-------AEQFNIPFIKTSAK 147 (191)
Q Consensus 124 ~~~~~~~~~~-------~~~~~~~~~~~s~~ 147 (191)
+.++...+ .+..++++|.....
T Consensus 156 --t~~el~~~k~~i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 156 --TPEELQAFKQRIREDLEENNIKIFDFPED 184 (281)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT--S------
T ss_pred --CHHHHHHHHHHHHHHHHHcCceeeccccc
Confidence 44444333 34567777665433
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=3.2e-11 Score=86.87 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=53.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhH----H
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEY----S 65 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~----~ 65 (191)
|+++|.|+||||||+|++++... ...++.++.+.......+.+. ...+.++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57899999999999999998774 455666654444444444432 135899999994421 1
Q ss_pred HHHH---hhcccCCEEEEEEeC
Q psy11135 66 AMRD---QYMRTGEGFLLVFAV 84 (191)
Q Consensus 66 ~~~~---~~~~~~~~~i~v~d~ 84 (191)
.+.. ..++.+|++++|+|.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 2222 235679999999986
No 304
>KOG0461|consensus
Probab=99.34 E-value=4.3e-11 Score=86.77 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=93.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC----CCCCccCCccceEEEE-----EE-------EcCeEEEEEEEeCCChhhHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH----FVDEYDPTIEDSYRKQ-----VV-------IDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~----~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~D~~g~~~~~~ 66 (191)
.+++.++|+..+|||||.+++..-. +...-.++.. ..... .. -.++..++.++|+||+...-.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eR-giTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTER-GITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCccccc-ceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 6899999999999999999997433 2111111111 11111 11 134556789999999877655
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH----HHHHHHHc-----
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ----AQELAEQF----- 137 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~~~----- 137 (191)
..-....-.|..++++|+...-......-++ +.. ..-...+||+||+|..+..-.... ...+.+.+
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~---~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGE---LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhh--hhh---hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 5555555678889999997633222221111 111 112367899999998763221112 22222222
Q ss_pred --CCCEEEeccCCC----CCHHHHHHHHHHHHHh
Q psy11135 138 --NIPFIKTSAKTR----MGVDDAFYTLVREIKK 165 (191)
Q Consensus 138 --~~~~~~~s~~~~----~~v~~l~~~i~~~~~~ 165 (191)
+.|++++|+.+| +++.++.+.|.+.+.+
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 379999999999 5666666666655543
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.33 E-value=6.7e-11 Score=93.02 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCC-ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HH---HHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDE-YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AM---RDQ 70 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~---~~~ 70 (191)
+++|+|+|.+|+||||++|+|++... ... ..+.+..........++.. +.++||||..+.. .. ...
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHHH
Confidence 47899999999999999999998863 222 2233332223333345544 8899999965421 11 122
Q ss_pred hcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCC-CCCcEEEEEecCCCCC
Q psy11135 71 YMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLST 122 (191)
Q Consensus 71 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 122 (191)
++. ..|++++|..++....-..-..+++.+...... --..+|||.|+.|..+
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 333 479999998876432211222344444332221 1236899999999886
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.31 E-value=4.4e-12 Score=89.01 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=60.7
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA 130 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 130 (191)
+.+.+++|.|.-... -....-+|.++++....-.+....++.-+.++ +=++|+||+|....+....+.
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTVRDL 189 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHHHHH
Confidence 456778887732221 23355689998888876655544444443333 338999999954322223332
Q ss_pred HHHHH-------HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 131 QELAE-------QFNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 131 ~~~~~-------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
+.... .|..|++.+||.++.|++++++.|.+...
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 22222 12358999999999999999999887553
No 307
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.31 E-value=4.8e-11 Score=86.69 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=92.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC--------Cc--cCCccce-------------------EEEEE-EEcCeE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD--------EY--DPTIEDS-------------------YRKQV-VIDGET 50 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~--------~~--~~~~~~~-------------------~~~~~-~~~~~~ 50 (191)
.+|.+.+|...=||||||-+|+... +.. .. ..+.++. ...-+ .+....
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 5789999999999999999997543 110 00 0111111 11000 122233
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-Ccc----
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAV---- 125 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~---- 125 (191)
-++.+-|||||+.|-.........+|+.++++|+.. -+.+-..--..+..... -..+++.+||+|+.+ .+.
T Consensus 86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred ceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHHHHH
Confidence 357889999999998877788889999999999944 11111111111222222 247899999999987 111
Q ss_pred CHHHHHHHHHHcCC---CEEEeccCCCCCHH
Q psy11135 126 DMNQAQELAEQFNI---PFIKTSAKTRMGVD 153 (191)
Q Consensus 126 ~~~~~~~~~~~~~~---~~~~~s~~~~~~v~ 153 (191)
...+...|+.++++ .++++||..|+|+-
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 12234566777774 58999999999864
No 308
>KOG1707|consensus
Probab=99.30 E-value=1.1e-10 Score=89.62 Aligned_cols=157 Identities=21% Similarity=0.323 Sum_probs=111.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE-EEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
++..|+|+.++|||.+++.+.++.+...+.+++...+. ......+....+.+-|.+-. ..+...... ..+|++.++|
T Consensus 426 f~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~Y 503 (625)
T KOG1707|consen 426 FQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVY 503 (625)
T ss_pred eeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEec
Confidence 67889999999999999999999876655555543332 23334455555677776643 333333332 7899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i 159 (191)
|.+++.++..+....+.... ..+.|.++|++|+|+.+ .+...+. .++++++++ +.+.+|....-. .++|..|
T Consensus 504 DsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 504 DSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred ccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 99999999888776654433 25789999999999977 2244444 889999997 466667664333 7889888
Q ss_pred HHHHHhhh
Q psy11135 160 VREIKKDK 167 (191)
Q Consensus 160 ~~~~~~~~ 167 (191)
..+..-.+
T Consensus 579 ~~~A~~Ph 586 (625)
T KOG1707|consen 579 ATMAQYPH 586 (625)
T ss_pred HHhhhCCC
Confidence 88776555
No 309
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.30 E-value=2.5e-11 Score=84.76 Aligned_cols=55 Identities=27% Similarity=0.281 Sum_probs=40.7
Q ss_pred CCcEEEEEecCCCCCCc-cCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 108 EVPMVLVGNKCDLSTWA-VDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 108 ~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
..|.++++||+|+.... ...+...+..+..+ .+++++|++++.|++++++++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999997522 22334444444443 789999999999999999998764
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.29 E-value=6.1e-11 Score=87.23 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=63.0
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH-
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN- 128 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~- 128 (191)
.+.+.|+||+|..... ......+|.++++-... +-+.+......+. +.|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~------~~~~ivv~NK~Dl~~~~~~~~~ 193 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM------EIADIYVVNKADGEGATNVTIA 193 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh------hhccEEEEEcccccchhHHHHH
Confidence 4568899999854222 22455677777774332 2233333332222 467899999999875221100
Q ss_pred --H----HHHHHH---HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 129 --Q----AQELAE---QFNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 129 --~----~~~~~~---~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
. ...+.. .+..+++++|++++.|+++++++|.+.+.
T Consensus 194 ~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 194 RLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0 011111 23357999999999999999999988644
No 311
>KOG1144|consensus
Probab=99.29 E-value=3.5e-11 Score=94.68 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=106.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEE-Ec----------------CeEEEEEEEeCCChhhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-ID----------------GETALLDILDTAGQEEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~D~~g~~~~~ 65 (191)
+--++++|+..+|||-|+..+.+..+.....+........++. .. -..-.+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4457899999999999999998877554444433332222111 00 112236789999999999
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-----CccC---------HH---
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-----WAVD---------MN--- 128 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~---------~~--- 128 (191)
.++.....-||.+|+|+|+.+.-....+ .-++.+ ...+.|+||.+||+|-.= +.-. ..
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqti-ESi~lL----R~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~ 629 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLL----RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN 629 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchh-HHHHHH----HhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence 9999999999999999999772111111 112222 235789999999999631 0000 00
Q ss_pred H--------HHHHHHH-c-----------C--CCEEEeccCCCCCHHHHHHHHHHHHHhhhhhh
Q psy11135 129 Q--------AQELAEQ-F-----------N--IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170 (191)
Q Consensus 129 ~--------~~~~~~~-~-----------~--~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~~~ 170 (191)
+ ..+|+.+ + + +.++++||..|+||.+++.+|++..+.....+
T Consensus 630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k 693 (1064)
T KOG1144|consen 630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK 693 (1064)
T ss_pred HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 0 1112111 0 1 34789999999999999999999887755443
No 312
>KOG0410|consensus
Probab=99.28 E-value=1.8e-11 Score=87.94 Aligned_cols=149 Identities=18% Similarity=0.198 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh---------hhHHHHHHhhccc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ---------EEYSAMRDQYMRT 74 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~~ 74 (191)
-|.|+|..++|||||+++|.+.. .+.+....+-+.........++.. +-+.||-|. ..+.++... ...
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~-vlltDTvGFisdLP~~LvaAF~ATLee-Vae 257 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF-VLLTDTVGFISDLPIQLVAAFQATLEE-VAE 257 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE-EEEeechhhhhhCcHHHHHHHHHHHHH-Hhh
Confidence 47899999999999999999655 333333333332222233333332 567999992 234444444 567
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc----EEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP----MVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
+|.++.+.|+++|..-......+..+... .-+..| ++=|=||+|..+.....+ .++ .+.+|+.+|+
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e~E-------~n~--~v~isaltgd 327 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVEEE-------KNL--DVGISALTGD 327 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCccc-------cCC--ccccccccCc
Confidence 99999999999988655555555555443 223333 455667777665332222 222 5788999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy11135 151 GVDDAFYTLVREIKK 165 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~ 165 (191)
|++++.+++...+..
T Consensus 328 gl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 328 GLEELLKAEETKVAS 342 (410)
T ss_pred cHHHHHHHHHHHhhh
Confidence 999999998877654
No 313
>KOG0705|consensus
Probab=99.26 E-value=4.2e-11 Score=91.36 Aligned_cols=160 Identities=24% Similarity=0.464 Sum_probs=124.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++++|+.++|..++|||.|+.+++...+..... +.+..+...+..++....+.+.|.+|... ..|-..+|++|+
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~-~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDES-PEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccC-CcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 468999999999999999999999888755543 34556677777888888899999888444 566778999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC---CccCHHHHHHH-HHHcCCCEEEeccCCCCCHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST---WAVDMNQAQEL-AEQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
+|.+.+..++..+..+...+..+.....+|+++++++--... +-+......++ ++...+.+|+..+..|.++...|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 999999999999988887777665567789999998743322 22333334444 44455899999999999999999
Q ss_pred HHHHHHHHhh
Q psy11135 157 YTLVREIKKD 166 (191)
Q Consensus 157 ~~i~~~~~~~ 166 (191)
+.+.......
T Consensus 182 ~~~~~k~i~~ 191 (749)
T KOG0705|consen 182 QEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 314
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-10 Score=86.56 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=75.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh--CCCCC--------CccCCc----------c-ceEEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ--NHFVD--------EYDPTI----------E-DSYRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~--~~~~~--------~~~~~~----------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
.+++-+|.+|||||-..|+- +.+.. ....+. + ........++.....+.+.|||||+++
T Consensus 15 FAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDF 94 (528)
T COG4108 15 FAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDF 94 (528)
T ss_pred eeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCcccc
Confidence 46789999999999998862 22110 000000 0 111223455666666899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
..-+..-+..+|..+.|+|+.. .+......+..-+...++|++-++||.|-
T Consensus 95 SEDTYRtLtAvDsAvMVIDaAK-----GiE~qT~KLfeVcrlR~iPI~TFiNKlDR 145 (528)
T COG4108 95 SEDTYRTLTAVDSAVMVIDAAK-----GIEPQTLKLFEVCRLRDIPIFTFINKLDR 145 (528)
T ss_pred chhHHHHHHhhheeeEEEeccc-----CccHHHHHHHHHHhhcCCceEEEeecccc
Confidence 8888888889999999999866 23333333445556678999999999996
No 315
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.9e-10 Score=85.89 Aligned_cols=154 Identities=17% Similarity=0.081 Sum_probs=101.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC---CCCcc-CCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF---VDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
-|+..|+-..|||||+.++.+..- +.... +++-+--.+.....+. .+.|+|.||++++-...-..+...|..++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 478899999999999999987662 22111 1222221222223333 58899999999988777777888999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc---CCCEEEeccCCCCCHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF---NIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~v~~l~~ 157 (191)
+++.++.-....... +..+.. . .....++|+||+|..+.....+..+++.... ..+++.+|+.+|.|++++.+
T Consensus 80 vV~~deGl~~qtgEh-L~iLdl-l--gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDL-L--GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHh-c--CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 999965322221111 111211 1 1234699999999886432333333443333 35789999999999999999
Q ss_pred HHHHHHH
Q psy11135 158 TLVREIK 164 (191)
Q Consensus 158 ~i~~~~~ 164 (191)
.|.....
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9998875
No 316
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.21 E-value=3.3e-10 Score=80.92 Aligned_cols=104 Identities=19% Similarity=0.212 Sum_probs=67.8
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHH
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQ 129 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 129 (191)
.+.+.|++|.|.-... -....-+|.++++.-..-.+....++.-+-++.. ++|+||.|....+....+
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEeccChhhHHHHHHH
Confidence 4567788888743322 2334458888888877666666666655544443 899999996553322222
Q ss_pred HHH-H--H------HHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 130 AQE-L--A------EQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 130 ~~~-~--~------~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
... + . +.|..+++.+|+.+|+|++++|++|.+....
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 211 1 1 1233589999999999999999998876643
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.21 E-value=6.5e-10 Score=78.64 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=42.9
Q ss_pred EEEEEEeCCChhh-------------HHHHHHhhccc-CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11135 51 ALLDILDTAGQEE-------------YSAMRDQYMRT-GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGN 116 (191)
Q Consensus 51 ~~~~~~D~~g~~~-------------~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 116 (191)
..+.++|+||... ...+...++++ .+.++++.|+...-+-.....+.+.+. ..+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence 4688999999642 22345566664 558888888755222112223333332 34689999999
Q ss_pred cCCCCC
Q psy11135 117 KCDLST 122 (191)
Q Consensus 117 K~D~~~ 122 (191)
|.|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999876
No 318
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.21 E-value=1.3e-10 Score=80.04 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcC
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFN 138 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~ 138 (191)
+...+..+++.+|++++|+|++++.. .|...+.. ...+.|+++|+||+|+.+.....+....+. +..+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 57788888999999999999987542 11122211 124679999999999976554444444443 3334
Q ss_pred C---CEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 139 I---PFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 139 ~---~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
. +++++|+++++|++++++.|.+.+.
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 6899999999999999999988764
No 319
>KOG0458|consensus
Probab=99.20 E-value=1.5e-10 Score=89.00 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=93.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-------------C---------ccCCcc------ceEEEEEEEcCeEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD-------------E---------YDPTIE------DSYRKQVVIDGETAL 52 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-------------~---------~~~~~~------~~~~~~~~~~~~~~~ 52 (191)
-+..+++|+..+|||||+.+++..- +.. . -+.|.. +-.....+++.....
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~ 256 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI 256 (603)
T ss_pred ceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence 3678999999999999999985321 000 0 000000 111223445666677
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-Ccc
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SFE---DIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAV 125 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~ 125 (191)
+.+.|.||+..+..-.-.....+|+.++|+|++..+ .|+ ..++....++. .. -..++|++||+|+.. .+.
T Consensus 257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lg--i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LG--ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred EEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cC--cceEEEEeecccccCccHH
Confidence 999999998888776667788899999999997632 222 11222222222 22 346899999999987 222
Q ss_pred CHHH----HHHHH-HHcC-----CCEEEeccCCCCCHHHH
Q psy11135 126 DMNQ----AQELA-EQFN-----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 126 ~~~~----~~~~~-~~~~-----~~~~~~s~~~~~~v~~l 155 (191)
..++ +..|. +..| +.|+++|...|+|+-..
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2222 23333 4555 46999999999987655
No 320
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.16 E-value=4.1e-11 Score=86.38 Aligned_cols=54 Identities=24% Similarity=0.309 Sum_probs=39.7
Q ss_pred CcEEEEEecCCCCCC-ccCHHHHHHHHHHc--CCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 109 VPMVLVGNKCDLSTW-AVDMNQAQELAEQF--NIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 109 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
.+-++|+||+|+.+. ....+...+..+.. ..+++++|+++++|++++.++|...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466999999999752 22333343334433 4789999999999999999998764
No 321
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=7.7e-10 Score=88.82 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-----CccC--Cc---------c-ce--EEEEEEEcCeEEEEEEEeCCChhhH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVD-----EYDP--TI---------E-DS--YRKQVVIDGETALLDILDTAGQEEY 64 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~-----~~~~--~~---------~-~~--~~~~~~~~~~~~~~~~~D~~g~~~~ 64 (191)
=+|.++|+..+|||||..+++...-.. .... +. + +. -.....+.+ .+.+.++|||||-++
T Consensus 11 RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVDF 89 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVDF 89 (697)
T ss_pred eEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCcccc
Confidence 378999999999999999997543111 1100 00 0 00 011222333 466899999999999
Q ss_pred HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.......++-.|++++|+|+...-....- ..|++... .+.|.++++||+|....
T Consensus 90 t~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 90 TIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred HHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhh----cCCCeEEEEECcccccc
Confidence 99999999999999999999874332222 22333333 37899999999998763
No 322
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.12 E-value=1.4e-10 Score=77.89 Aligned_cols=54 Identities=30% Similarity=0.326 Sum_probs=43.0
Q ss_pred cEEEEEecCCCCC-CccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 110 PMVLVGNKCDLST-WAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 110 p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
.=++|+||.|+.+ -..+.+...+.+++.+ .+++++|.++|.|++++++++....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 4489999999987 3445566666666655 7999999999999999999987653
No 323
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.11 E-value=8.3e-09 Score=75.75 Aligned_cols=135 Identities=26% Similarity=0.379 Sum_probs=77.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----c-----CCcc-ceEEEEEEEcCeEEEEEEEeCCChhh--------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY-----D-----PTIE-DSYRKQVVIDGETALLDILDTAGQEE-------- 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~-----~-----~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~-------- 63 (191)
.+.|+++|+.|.|||||+|.|++....... . ++.. ......+.-++....+.++||||--+
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 689999999999999999999988643321 1 1111 11222333467778899999999111
Q ss_pred ------HHHHHHhh------------c--ccCCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 64 ------YSAMRDQY------------M--RTGEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 64 ------~~~~~~~~------------~--~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
..+....+ + ..+|+++|+...+.. .+..+. ..++.+. ..+-+|=|+.|+|...
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeeccccCC
Confidence 01111111 1 126777777765442 122221 2222232 2467899999999754
Q ss_pred C---ccCHHHHHHHHHHcCCCEEE
Q psy11135 123 W---AVDMNQAQELAEQFNIPFIK 143 (191)
Q Consensus 123 ~---~~~~~~~~~~~~~~~~~~~~ 143 (191)
. ....+...+....+++++|.
T Consensus 177 ~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 177 DDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeC
Confidence 1 11223344445667888884
No 324
>KOG2486|consensus
Probab=99.10 E-value=9.3e-11 Score=82.62 Aligned_cols=155 Identities=19% Similarity=0.249 Sum_probs=92.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC-CccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 71 (191)
..++++.|..++|||+|++.+...+....... ..+.+......--+.. +.++|.|| ..++......|
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCcccccCCccCcchHhHhHHHH
Confidence 35789999999999999999998874332222 3333322222222333 67799999 33566777777
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHH---HHHH----H---HHHcCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMN---QAQE----L---AEQFNI 139 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---~~~~----~---~~~~~~ 139 (191)
+.+-+-.+-+|.+.+... .+.........++...+.|+.+|.||+|....-. ... .+.. + ......
T Consensus 214 ~leR~nLv~~FLLvd~sv--~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~ 291 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASV--PIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDL 291 (320)
T ss_pred HHhhhhhheeeeeeeccC--CCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccC
Confidence 666544433333333221 1222223334455556899999999999865211 111 1111 1 111124
Q ss_pred CEEEeccCCCCCHHHHHHHHHH
Q psy11135 140 PFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 140 ~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
|++.+|+.++.|+++++-.|.+
T Consensus 292 Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 292 PWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred CceeeecccccCceeeeeehhh
Confidence 6778999999999988776654
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.10 E-value=5.7e-10 Score=74.48 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=65.8
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEE
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIK 143 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 143 (191)
|..+.++..+++|++++++|+.++..... ..+... ....+.|+++|+||+|+.+... .+....+....+.++++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~----~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERY----VLELGKKLLIVLNKADLVPKEV-LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHH----HHhCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCCCcEEE
Confidence 45677888889999999999987543221 111111 1223679999999999864211 11122344456678999
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q psy11135 144 TSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~~ 164 (191)
+|++++.|++++++.|.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999999988775
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.3e-08 Score=75.09 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=54.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEE----------------cCeEEEEEEEeCCChhhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVI----------------DGETALLDILDTAGQEEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~D~~g~~~~~ 65 (191)
.+++.++|.|+||||||+|+++.... ..+|+.+|-+.-.....+ .-....+.++|.+|.-.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57899999999999999999998773 356665443221111111 1123468999999844322
Q ss_pred ----HHHH---hhcccCCEEEEEEeCC
Q psy11135 66 ----AMRD---QYMRTGEGFLLVFAVN 85 (191)
Q Consensus 66 ----~~~~---~~~~~~~~~i~v~d~~ 85 (191)
.+.. .-++.+|+++.|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2222 2267799999998864
No 327
>KOG0463|consensus
Probab=99.08 E-value=5.4e-10 Score=82.17 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=95.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CccCCccc--------------------eEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD------------------EYDPTIED--------------------SYRKQV 44 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~------------------~~~~~~~~--------------------~~~~~~ 44 (191)
+++|+|+|...+|||||+-.|...+..+ ...++.+. ......
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 7899999999999999998775433211 11111110 011111
Q ss_pred EEcCeEEEEEEEeCCChhhHHHHHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 45 VIDGETALLDILDTAGQEEYSAMRDQYMRT--GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 45 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
.+.+....+.|+|.+|+++|-..+-..... .|..++++-.+. .+.-+.++.+.....-..|+++|+||+|+-+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNa-----GIiGmTKEHLgLALaL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANA-----GIIGMTKEHLGLALALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccc-----cceeccHHhhhhhhhhcCcEEEEEEeeccCc
Confidence 223344457899999999987765544333 455555555433 2222223333333344689999999999988
Q ss_pred CccCHHHHHHHHHHc-----------------------------CCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 123 WAVDMNQAQELAEQF-----------------------------NIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 123 ~~~~~~~~~~~~~~~-----------------------------~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
..+..+..+.+.+.+ -||+|.+|..+|+|++-+ ..+++.+..++
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LL-kmFLNlls~R~ 360 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLL-KMFLNLLSLRR 360 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHH-HHHHhhcCccc
Confidence 666666555443322 267899999999997644 44444444433
No 328
>KOG1547|consensus
Probab=99.07 E-value=7e-09 Score=71.92 Aligned_cols=154 Identities=22% Similarity=0.269 Sum_probs=85.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccC--------CccceEEE-EEEEcCeEEEEEEEeCCChh----------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDP--------TIEDSYRK-QVVIDGETALLDILDTAGQE---------- 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~--------~~~~~~~~-~~~~~~~~~~~~~~D~~g~~---------- 62 (191)
+|+|+|+|..|.|||||+|.++..+... ...+ |+...... .+.-++...++.++||||--
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 7999999999999999999998766322 1111 11111111 12235666788999999911
Q ss_pred ----------------hHHHHHHhhccc--CCEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 63 ----------------EYSAMRDQYMRT--GEGFLLVFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 63 ----------------~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
+....++..+.. ++++++.+..+. .++..++ +.++.+.. -.-++-|+-|+|....
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence 111122223332 566666665544 2233332 33333333 3467788889997541
Q ss_pred c---cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 124 A---VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 124 ~---~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
+ -..+..++-...+++.+++-.+.+-..=+..++.-++.
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR~ 241 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVRE 241 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHHh
Confidence 1 12233344455678888887766655444555544433
No 329
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.6e-09 Score=74.89 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=86.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC------CCCCcc-----CCc------cceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH------FVDEYD-----PTI------EDSYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~------~~~~~~-----~~~------~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
-++|..+|+...|||||..++...- ....|. |.. -......+...+.. +..+|+||+.+|-
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDYv 89 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADYV 89 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHHH
Confidence 4799999999999999998885311 111111 100 01112233344555 6789999999987
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-cEEEEEecCCCCCCc----cCHHHHHHHHHHcCC-
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-PMVLVGNKCDLSTWA----VDMNQAQELAEQFNI- 139 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~- 139 (191)
...-....+.|+.|+|+++++......-...+ +.+ .-+. .+++++||+|+.+.. .-..+.+++..++++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--lar---qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHIL--LAR---QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhh---hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 76666678899999999998844322222221 111 1245 478889999998622 122345666777764
Q ss_pred ----CEEEeccCC
Q psy11135 140 ----PFIKTSAKT 148 (191)
Q Consensus 140 ----~~~~~s~~~ 148 (191)
|++.-|+..
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 566666653
No 330
>KOG1954|consensus
Probab=99.04 E-value=6e-09 Score=76.54 Aligned_cols=113 Identities=17% Similarity=0.285 Sum_probs=76.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccC--CccceEEEEEEE------cCeE---------------------------
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDP--TIEDSYRKQVVI------DGET--------------------------- 50 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~------~~~~--------------------------- 50 (191)
|+++|+-+.||||||+.|+..+++....+ ++.+.+....+- ++..
T Consensus 61 ill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csq 140 (532)
T KOG1954|consen 61 ILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQ 140 (532)
T ss_pred EEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhc
Confidence 78999999999999999999887643332 222232222211 1100
Q ss_pred ------EEEEEEeCCChh-----------hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEE
Q psy11135 51 ------ALLDILDTAGQE-----------EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVL 113 (191)
Q Consensus 51 ------~~~~~~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iv 113 (191)
=.+.++||||.- .+......+...+|.++++||..-.+--++....+..+.. ..-.+-|
T Consensus 141 mp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRV 216 (532)
T KOG1954|consen 141 LPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRV 216 (532)
T ss_pred CChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEE
Confidence 057899999933 3556778888999999999998665544455555555544 2446789
Q ss_pred EEecCCCCC
Q psy11135 114 VGNKCDLST 122 (191)
Q Consensus 114 v~nK~D~~~ 122 (191)
|+||+|..+
T Consensus 217 VLNKADqVd 225 (532)
T KOG1954|consen 217 VLNKADQVD 225 (532)
T ss_pred EeccccccC
Confidence 999999654
No 331
>KOG2655|consensus
Probab=99.03 E-value=1.3e-08 Score=75.18 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=79.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------ccCCcc--ceEEEEEEEcCeEEEEEEEeCCChhh---------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE--------YDPTIE--DSYRKQVVIDGETALLDILDTAGQEE--------- 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~D~~g~~~--------- 63 (191)
+|.++++|..|.|||||+|.|+...+..+ ....+. ......+.-++....+.++||||--+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 58999999999999999999998754332 111111 11222233356778899999999111
Q ss_pred -----HHHHHHh-----------hcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135 64 -----YSAMRDQ-----------YMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 64 -----~~~~~~~-----------~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (191)
.++.... -+. .+|+++|.+..+.. .+..+.-.+.. .......+|-|+-|+|......
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh----gL~p~Di~~Mk-~l~~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH----GLKPLDIEFMK-KLSKKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC----CCcHhhHHHHH-HHhccccccceeeccccCCHHH
Confidence 0111111 122 36777877765442 12222212211 1123578899999999764211
Q ss_pred ---CHHHHHHHHHHcCCCEEEeccCCC
Q psy11135 126 ---DMNQAQELAEQFNIPFIKTSAKTR 149 (191)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~s~~~~ 149 (191)
......+....+++++|.......
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 222233444556777776654433
No 332
>KOG1143|consensus
Probab=99.03 E-value=5.3e-10 Score=82.08 Aligned_cols=155 Identities=21% Similarity=0.245 Sum_probs=94.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC------------------Ccc------ceEEEEEE----------EcC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP------------------TIE------DSYRKQVV----------IDG 48 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~------------------~~~------~~~~~~~~----------~~~ 48 (191)
+++++|+|...+|||||+-.|.+++..+..-. ... +....... .+.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 78999999999999999999887664322110 000 00000000 112
Q ss_pred eEEEEEEEeCCChhhHHHHHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135 49 ETALLDILDTAGQEEYSAMRDQYMRT--GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 126 (191)
....+.++|.+|+.+|....-+.+.. .|..+++++++..-.|..- +-+-.+. .-++|++++++|+|+..+.-.
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-EHLgl~~----AL~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-EHLGLIA----ALNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-HHHHHHH----HhCCCeEEEEEeeccccchhH
Confidence 23357899999999998876665554 5777888888764443321 2222222 347899999999999764222
Q ss_pred HHHHHHHH---HHc--------------------------CCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 127 MNQAQELA---EQF--------------------------NIPFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 127 ~~~~~~~~---~~~--------------------------~~~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
....+++. .+. -.|+|-+|+..|++++-+ ..+++.+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll-~~fLn~L 386 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL-RTFLNCL 386 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH-HHHHhhc
Confidence 22222221 111 247888999999997644 3444444
No 333
>KOG0468|consensus
Probab=99.03 E-value=1.7e-09 Score=84.59 Aligned_cols=113 Identities=27% Similarity=0.300 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccC---------Cccc------eE------EEEEEEcCeEEEEEEEeCCChh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---------TIED------SY------RKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~---------~~~~------~~------~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
.+++++|+-++|||+|+.-|.....+.-... +... .. .......++.+.++++|||||.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 5789999999999999999976553222111 0000 00 0011235677889999999999
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
.+.......++.+|++++++|+.+.-.+.. .++.+.......|+++|+||+|..
T Consensus 209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-----Er~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 209 NFSDETTASLRLSDGVVLVVDVAEGVMLNT-----ERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred cchHHHHHHhhhcceEEEEEEcccCceeeH-----HHHHHHHHhccCcEEEEEehhHHH
Confidence 998888888999999999999977544332 223333334578999999999963
No 334
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.00 E-value=1.4e-09 Score=71.34 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (191)
+++++|.+|+|||||+|++.+............+.......+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 68999999999999999999877432221111122223334444 3689999995
No 335
>KOG0085|consensus
Probab=99.00 E-value=6.8e-10 Score=76.51 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=84.7
Q ss_pred EcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy11135 46 IDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVG 115 (191)
Q Consensus 46 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~ 115 (191)
++-..+.+.++|.+|+...+..|-+++.+.-.++++..++. ....++...++..+..+....+.++|+.+
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence 34455668899999999988888888888777776655432 33455566777778877777889999999
Q ss_pred ecCCCCCCc-----------------cCHHHHHHHHHHc----C------CCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 116 NKCDLSTWA-----------------VDMNQAQELAEQF----N------IPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 116 nK~D~~~~~-----------------~~~~~~~~~~~~~----~------~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
||.|+.... -+.+.+++|.-+. + +.-.++.|.+.+|+..+|.+....+....
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 999985522 2223333332221 2 12345677889999999999887776543
No 336
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.98 E-value=4e-09 Score=77.15 Aligned_cols=88 Identities=19% Similarity=0.144 Sum_probs=67.8
Q ss_pred HhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135 69 DQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK 147 (191)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 147 (191)
...++++|.+++|+|+.++. ++..+..|+..+.. .++|.++|+||+|+.+.. ............+.+++++|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE-EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH-HHHHHHHHHHhCCCeEEEEECC
Confidence 44588999999999999987 77778787765544 368999999999996531 1122233445678899999999
Q ss_pred CCCCHHHHHHHHHH
Q psy11135 148 TRMGVDDAFYTLVR 161 (191)
Q Consensus 148 ~~~~v~~l~~~i~~ 161 (191)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999887754
No 337
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.97 E-value=8.6e-09 Score=77.73 Aligned_cols=95 Identities=22% Similarity=0.387 Sum_probs=71.5
Q ss_pred hhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHH
Q psy11135 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQ 136 (191)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~ 136 (191)
.+++..+...+...++++++|+|+.+.. ..|...+..+. .+.|+++|+||+|+.+.....+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence 5678888888889999999999997744 23334444332 2579999999999987555545444 34666
Q ss_pred cCC---CEEEeccCCCCCHHHHHHHHHHH
Q psy11135 137 FNI---PFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 137 ~~~---~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
.++ .++++||++++|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 776 48999999999999999998654
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.96 E-value=1.8e-09 Score=79.60 Aligned_cols=157 Identities=21% Similarity=0.158 Sum_probs=92.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------cC-----CccceEEEEEEEc--------------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEY----------DP-----TIEDSYRKQVVID-------------------- 47 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~----------~~-----~~~~~~~~~~~~~-------------------- 47 (191)
.+.+.++|+...|||||+-.|......... .. -+.+.....+-++
T Consensus 117 hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 117 HVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred eEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 578999999999999998887543321100 00 0000000011111
Q ss_pred -CeEEEEEEEeCCChhhHHHHHH--hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 48 -GETALLDILDTAGQEEYSAMRD--QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 48 -~~~~~~~~~D~~g~~~~~~~~~--~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
...-.+.++||.|++.|-.+.- .+-...|-.+++..+++.-+ .+-++........+.|+++++||+|+.+.+
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-----~~tkEHLgi~~a~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-----KMTKEHLGIALAMELPVIVVVTKIDMVPDD 271 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-----hhhhHhhhhhhhhcCCEEEEEEecccCcHH
Confidence 1112478999999999876433 34556899999999988432 333343444444578999999999997632
Q ss_pred cCHH---HHHHHHH----------------------HcC---CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 125 VDMN---QAQELAE----------------------QFN---IPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 125 ~~~~---~~~~~~~----------------------~~~---~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.... +...+.+ +.+ +|+|.+|+.+|+|++-+.+ +...+++
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp~ 339 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLPK 339 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCCc
Confidence 2211 1111111 112 5789999999999765444 4444444
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=98.96 E-value=3.8e-09 Score=77.69 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=63.4
Q ss_pred hcccCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR 149 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 149 (191)
..+++|.+++|+|+.+++.... +..|+..+.. .++|+++|+||+|+.......+......+..+++++++|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3689999999999988765433 4556554433 4689999999999963222222344555667889999999999
Q ss_pred CCHHHHHHHHH
Q psy11135 150 MGVDDAFYTLV 160 (191)
Q Consensus 150 ~~v~~l~~~i~ 160 (191)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998764
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.95 E-value=3.2e-09 Score=70.95 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (191)
.++|+++|.+|+|||||+|++.+.... ...++++.. ...+.. +.. +.++||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~-~~~--~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITL-MKR--IYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEc-CCC--EEEEECcCC
Confidence 567899999999999999999987632 222222221 111122 222 678999993
No 341
>PRK12288 GTPase RsgA; Reviewed
Probab=98.94 E-value=9.9e-09 Score=76.71 Aligned_cols=86 Identities=19% Similarity=0.139 Sum_probs=66.8
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc--CHHHHHHHHHHcCCCEEEeccCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV--DMNQAQELAEQFNIPFIKTSAKTR 149 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~ 149 (191)
.+++|.+++|++.+...++..+..|+.... ..++|.++|+||+|+.+... ............+++++++|++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 577999999999988888988888876443 24689999999999975321 112223344567889999999999
Q ss_pred CCHHHHHHHHHH
Q psy11135 150 MGVDDAFYTLVR 161 (191)
Q Consensus 150 ~~v~~l~~~i~~ 161 (191)
.|++++++.|..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 342
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.94 E-value=6.7e-09 Score=79.29 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=74.7
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK----------SFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (191)
...+.++|++|+...+.-|..++.+++++++|.++++-+ .+.+....+..+.......+.|++++.||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 344789999999999999999999999999999986522 2334445555555444445899999999999
Q ss_pred CCC-------------Cc------cCHHHHHHHHHH------------cCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 120 LST-------------WA------VDMNQAQELAEQ------------FNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 120 ~~~-------------~~------~~~~~~~~~~~~------------~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
+.. ++ -..+.+..+... ..+.++.++|.+..++..+|+.+.+.
T Consensus 315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 722 11 122333333221 11235567788888888888877654
No 343
>PRK12289 GTPase RsgA; Reviewed
Probab=98.93 E-value=9.7e-09 Score=76.80 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=65.2
Q ss_pred HHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (191)
+....++++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+..... .+........+|++++++|
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~~v~~iS 156 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGYQPLFIS 156 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHH-HHHHHHHHHhcCCeEEEEE
Confidence 3445588999999999998765 4445556655442 34789999999999964211 1222333456788999999
Q ss_pred cCCCCCHHHHHHHHHH
Q psy11135 146 AKTRMGVDDAFYTLVR 161 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~ 161 (191)
+.++.|++++++.+..
T Consensus 157 A~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 157 VETGIGLEALLEQLRN 172 (352)
T ss_pred cCCCCCHHHHhhhhcc
Confidence 9999999999988754
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.92 E-value=4.1e-09 Score=71.22 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=34.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (191)
.++++++|.+|+|||||+|++.+.........+..+........+ . .+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~--~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-K--KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-C--CEEEEECcC
Confidence 378999999999999999999987742211111111111122232 2 378899999
No 345
>KOG3887|consensus
Probab=98.92 E-value=1.5e-08 Score=70.39 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=96.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH---HHHhhcccCCEEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA---MRDQYMRTGEGFLLV 81 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~i~v 81 (191)
+|+++|..-+||||+-...+..-.+.+..--..+.....-.+.+.-+.+++||.|||..+-. --...++.+.+++++
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv 108 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV 108 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence 59999999999999866655444332211000011011112334556789999999875432 244568899999999
Q ss_pred EeCCChhhHHHHHHHHHHH-HhhcCCCCCcEEEEEecCCCCCCccCHHHH--------HHHHHH----cCCCEEEeccCC
Q psy11135 82 FAVNSMKSFEDIGSYREQI-KRVKDAEEVPMVLVGNKCDLSTWAVDMNQA--------QELAEQ----FNIPFIKTSAKT 148 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~-~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--------~~~~~~----~~~~~~~~s~~~ 148 (191)
+|+.+.- .+.+..+...+ +.+...+++.+=|.+.|.|-...+...+.. .++++. ..+.|+.+|. -
T Consensus 109 IDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI-y 186 (347)
T KOG3887|consen 109 IDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI-Y 186 (347)
T ss_pred EechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee-c
Confidence 9997632 22222222222 234456788899999999976533222211 122221 1234666664 4
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhh
Q psy11135 149 RMGVDDAFYTLVREIKKDKMLRG 171 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~~~~~~~ 171 (191)
...+-+.|..+++.+.+...-.+
T Consensus 187 DHSIfEAFSkvVQkLipqLptLE 209 (347)
T KOG3887|consen 187 DHSIFEAFSKVVQKLIPQLPTLE 209 (347)
T ss_pred chHHHHHHHHHHHHHhhhchhHH
Confidence 56677888888887766554433
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.91 E-value=5.2e-09 Score=69.75 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=56.8
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l 155 (191)
|++++|+|+.++.+.. ..++.. ......+.|+++|+||+|+.+.....+....+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 6889999998865433 122221 122234689999999999864211111122333344567899999999999999
Q ss_pred HHHHHHHHHh
Q psy11135 156 FYTLVREIKK 165 (191)
Q Consensus 156 ~~~i~~~~~~ 165 (191)
.+.|.+.+.+
T Consensus 77 ~~~i~~~~~~ 86 (155)
T cd01849 77 ESAFTKQTNS 86 (155)
T ss_pred HHHHHHHhHH
Confidence 9999877653
No 347
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.90 E-value=2.3e-07 Score=60.67 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCC-C---------------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTA-G--------------------- 60 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g--------------------- 60 (191)
.+||.+.|+||+||||++.++...--...+ ..+..+.....-+++..-+.+.|+. |
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 589999999999999999988643321111 2223334444455566666666666 2
Q ss_pred ---hh-hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135 61 ---QE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ 136 (191)
Q Consensus 61 ---~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 136 (191)
.+ .........++.+|++ ++|---+-.+. ...+...+.. ....+.|++.++.+.+- ....+.+.+.
T Consensus 83 v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~-vl~~~kpliatlHrrsr------~P~v~~ik~~ 152 (179)
T COG1618 83 VEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEE-VLKSGKPLIATLHRRSR------HPLVQRIKKL 152 (179)
T ss_pred HHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHH-HhcCCCcEEEEEecccC------ChHHHHhhhc
Confidence 11 1111223334445554 44432221111 1122222222 22346788888887652 2344445444
Q ss_pred cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 137 FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 137 ~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.++.++ .+..|=+.+++.|++.|..
T Consensus 153 ~~v~v~----lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 153 GGVYVF----LTPENRNRILNEILSVLKG 177 (179)
T ss_pred CCEEEE----EccchhhHHHHHHHHHhcc
Confidence 444443 3444444888888877643
No 348
>KOG1487|consensus
Probab=98.88 E-value=6.3e-09 Score=72.94 Aligned_cols=83 Identities=25% Similarity=0.231 Sum_probs=57.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-------HHHhhcccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-------MRDQYMRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 76 (191)
++-++|.|++||||++..+.+.. ....+..++-.+......+++.. +++.|.||.-+-.. ..-...+.+.
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 78899999999999999998776 44555555554444444444444 89999999654322 1223456688
Q ss_pred EEEEEEeCCChhh
Q psy11135 77 GFLLVFAVNSMKS 89 (191)
Q Consensus 77 ~~i~v~d~~~~~s 89 (191)
.+++|.|+..|-+
T Consensus 139 li~~vld~~kp~~ 151 (358)
T KOG1487|consen 139 LIFIVLDVLKPLS 151 (358)
T ss_pred EEEEEeeccCccc
Confidence 8999999876544
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=7e-09 Score=69.28 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=58.2
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTR 149 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 149 (191)
..+..+|++++|.|+.++..- ....+.+.+.. ...+.|+++|+||+|+.+..........+.+.+....+++|++++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT-RCKHVEEYLKK--EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc-cCHHHHHHHHh--ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 347789999999999886321 11222222222 123579999999999965321112222333333333578999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy11135 150 MGVDDAFYTLVREIK 164 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~ 164 (191)
.|++++.+.+...+.
T Consensus 81 ~~~~~L~~~l~~~~~ 95 (157)
T cd01858 81 FGKGSLIQLLRQFSK 95 (157)
T ss_pred ccHHHHHHHHHHHHh
Confidence 999999999876543
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.80 E-value=3.4e-08 Score=72.01 Aligned_cols=102 Identities=20% Similarity=0.182 Sum_probs=67.5
Q ss_pred CCChhh-HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135 58 TAGQEE-YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ 136 (191)
Q Consensus 58 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 136 (191)
.|||.. ........++.+|++++|+|+.++.+... ..+.... .+.|+++|+||+|+.+.... +...+..+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHHHHHHHH
Confidence 467653 33455666889999999999977544221 1111111 25799999999998642211 111122233
Q ss_pred cCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 137 FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 137 ~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
.+.+++.+|+.++.|++++.+.+.+.+.+..
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~~ 106 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEKN 106 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHhh
Confidence 5668899999999999999999988876543
No 351
>KOG0099|consensus
Probab=98.80 E-value=8.3e-08 Score=67.53 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=77.4
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh-------hHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK-------SFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDL 120 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~ 120 (191)
+.++.+|.+|+.+.+..|-.++....++|++...+.-. +-..+++-+..+.+.. ....+.+|+.+||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 34889999999999999999999999999998865411 2223333333332211 1235789999999998
Q ss_pred CCCcc-----------------------------CH----------HHHHHHHHHc-----CCCEEEeccCCCCCHHHHH
Q psy11135 121 STWAV-----------------------------DM----------NQAQELAEQF-----NIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 121 ~~~~~-----------------------------~~----------~~~~~~~~~~-----~~~~~~~s~~~~~~v~~l~ 156 (191)
..+.+ +. ++........ -|.+.++.|.+.+++..+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 32100 00 0000111111 1456778889999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy11135 157 YTLVREIKKDKMLR 170 (191)
Q Consensus 157 ~~i~~~~~~~~~~~ 170 (191)
+.-...++..+..+
T Consensus 362 nDcrdiIqr~hlrq 375 (379)
T KOG0099|consen 362 NDCRDIIQRMHLRQ 375 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888777766543
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.78 E-value=2.1e-08 Score=67.90 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=36.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (191)
.++++++|.+|+|||||++++.+............+.......++ ..+.++||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 368999999999999999999987753222111111112222333 23689999994
No 353
>KOG0466|consensus
Probab=98.78 E-value=1.4e-08 Score=72.91 Aligned_cols=107 Identities=20% Similarity=0.249 Sum_probs=73.8
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM 127 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 127 (191)
.+.++|+||++..-++.-....-.|+.++++..+.+ .+-+.+... ++.. -..++++-||+|+..+....
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~-----LkhiiilQNKiDli~e~~A~ 198 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK-----LKHIIILQNKIDLIKESQAL 198 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh-----hceEEEEechhhhhhHHHHH
Confidence 478899999987766555556667888888877652 222222221 1112 24789999999998744444
Q ss_pred HHHHHHHH---H---cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 128 NQAQELAE---Q---FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 128 ~~~~~~~~---~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
++-+++.+ . .+.|++++||.-.+|++-+.++|.+.++.
T Consensus 199 eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 199 EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 44333332 2 25799999999999999999999998864
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.78 E-value=2.4e-08 Score=72.74 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=36.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (191)
.++++++|.+|+|||||+|++.+.... ...++++... .....+. .+.++||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC---CEEEEECCCc
Confidence 578999999999999999999977632 2222222222 2222322 2689999996
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.76 E-value=3.8e-08 Score=72.10 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=36.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
.++++++|.+|+|||||+|++.+..... ..++++.. ......+ .. +.++||||..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~-~~--~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLG-KG--LELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeC-Cc--EEEEECCCcC
Confidence 4789999999999999999999877422 22222222 1122222 23 6799999954
No 356
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.76 E-value=1e-08 Score=67.91 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-------ccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDE-------YDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
-++++|++|||||||+|+|.+...... ..+...++....+..++.. .++||||..+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~ 99 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRS 99 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCc
Confidence 468999999999999999998752111 1111112223334444443 5799999554
No 357
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.75 E-value=2.1e-07 Score=79.91 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=66.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCc------cCCccceEEEEEEEcCeEEEEEEEeCCChh------------hHHHH
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDEY------DPTIEDSYRKQVVIDGETALLDILDTAGQE------------EYSAM 67 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------------~~~~~ 67 (191)
.+|+|++|+||||+++.- +-.++-.. ....+.......++.+.. .++||+|.. .+...
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCE---EEEcCCCccccCCCcccccHHHHHHH
Confidence 478999999999999987 33332211 111122233444555555 379999921 13333
Q ss_pred HHhh-----cccCCEEEEEEeCCChh-----h----HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 68 RDQY-----MRTGEGFLLVFAVNSMK-----S----FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 68 ~~~~-----~~~~~~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
.... -+..+++|+++|+.+.- . -..++..+.++... .....|++||+||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3322 13489999999986521 1 12333444444432 234799999999999875
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.73 E-value=5.5e-08 Score=64.84 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=36.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (191)
..+++++|.+|+|||||+|++.+... ....++++...... ..+ . .+.++||||
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~--~~~-~--~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV--KLD-N--KIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE--Eec-C--CEEEEECCC
Confidence 46799999999999999999998763 22333333333222 222 2 378899999
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.72 E-value=3.6e-08 Score=73.18 Aligned_cols=55 Identities=27% Similarity=0.347 Sum_probs=37.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
.++++|+|.|++|||||||+|.+..... ..+++|..... +..+.. +.++||||.-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~--i~~~~~---i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQW--IKLDDG---IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEE--EEcCCC---eEEecCCCcC
Confidence 4789999999999999999999988532 33322222222 223332 6789999943
No 360
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.5e-07 Score=70.00 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=81.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
++|-++|+|++|+||||||+.+..+--....... ......+.++.-.+.+.++|. +..++. ...+-+|.++++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i----~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlLl 140 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEI----RGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLLL 140 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhcc----CCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEEE
Confidence 4678899999999999999999865422111111 111223556667789999983 333332 335668999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCHHHHHH-HHHH------cCCCEEEeccCC
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDMNQAQE-LAEQ------FNIPFIKTSAKT 148 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~-~~~~------~~~~~~~~s~~~ 148 (191)
+|..-.-..+.. ++++.+.. .+.| ++-|+|+.|+-........++. +... .|+.+|..|...
T Consensus 141 IdgnfGfEMETm-EFLnil~~----HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 141 IDGNFGFEMETM-EFLNILIS----HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eccccCceehHH-HHHHHHhh----cCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 998764433333 23333333 3555 7789999999774433333221 2111 156788877653
No 361
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=7e-08 Score=64.38 Aligned_cols=55 Identities=33% Similarity=0.323 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (191)
..+++++|.+|+||||+++++.+..... ..++.+.........-+. .+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~--~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS--KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC--CEEEEECcC
Confidence 4688999999999999999999765321 122222222222211222 378999999
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.69 E-value=3.8e-08 Score=67.82 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
..++++|.+|+|||||+|+|.+..
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999754
No 363
>KOG0448|consensus
Probab=98.69 E-value=9.2e-07 Score=69.87 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEE---------------------------------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRK--------------------------------------- 42 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~--------------------------------------- 42 (191)
..||++.|..++||||++|+++... .+.+..+++.-+...
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~ 188 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGA 188 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCc
Confidence 4699999999999999999998665 333322222111000
Q ss_pred ----EEEEcCeE-----EEEEEEeCCChh---hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11135 43 ----QVVIDGET-----ALLDILDTAGQE---EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP 110 (191)
Q Consensus 43 ----~~~~~~~~-----~~~~~~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 110 (191)
.+.+++.. -.+.++|.||.+ +..+-...+...+|++++|..+.+-.+..+... +.... ..+..
T Consensus 189 ~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~F-f~~vs----~~Kpn 263 (749)
T KOG0448|consen 189 GSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQF-FHKVS----EEKPN 263 (749)
T ss_pred ceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHH-HHHhh----ccCCc
Confidence 11122211 147789999955 333444555678999999998877544333322 22222 22455
Q ss_pred EEEEEecCCCCC
Q psy11135 111 MVLVGNKCDLST 122 (191)
Q Consensus 111 ~ivv~nK~D~~~ 122 (191)
++|+.||+|...
T Consensus 264 iFIlnnkwDasa 275 (749)
T KOG0448|consen 264 IFILNNKWDASA 275 (749)
T ss_pred EEEEechhhhhc
Confidence 777788889865
No 364
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.68 E-value=1.5e-07 Score=70.42 Aligned_cols=82 Identities=17% Similarity=-0.010 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhHH-
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEYS- 65 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~- 65 (191)
+++.++|.|++|||||++++++... ...|+.++.........+++. ...+.+.|.||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 345555544333333444332 2357899999965422
Q ss_pred ------HHHHhhcccCCEEEEEEeCC
Q psy11135 66 ------AMRDQYMRTGEGFLLVFAVN 85 (191)
Q Consensus 66 ------~~~~~~~~~~~~~i~v~d~~ 85 (191)
...-..++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 12333478899999999974
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.68 E-value=1e-07 Score=64.65 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=65.1
Q ss_pred CCChh-hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135 58 TAGQE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ 136 (191)
Q Consensus 58 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 136 (191)
.||+. +........++++|.+++++|+.++..-... . +.... .+.|.++|+||+|+.+... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~--~~k~~ilVlNK~Dl~~~~~-~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKIL--GNKPRIIVLNKADLADPKK-TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHh--cCCCEEEEEehhhcCChHH-HHHHHHHHHh
Confidence 45654 3334456668899999999999875432111 1 11211 2469999999999864211 1112123333
Q ss_pred cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 137 FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 137 ~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.+..++.+|++++.|++++.+.+...+..
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~~ 102 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLKD 102 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 45578999999999999999999887643
No 366
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.68 E-value=1.6e-07 Score=68.88 Aligned_cols=102 Identities=20% Similarity=0.163 Sum_probs=68.0
Q ss_pred eCCChhh-HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH
Q psy11135 57 DTAGQEE-YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE 135 (191)
Q Consensus 57 D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 135 (191)
-.|||.. -.......+..+|++++|+|+.++.+... .++.... . +.|.++|+||+|+.+... .+...++..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~--~kp~iiVlNK~DL~~~~~-~~~~~~~~~ 77 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---G--NKPRLLILNKSDLADPEV-TKKWIEYFE 77 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---C--CCCEEEEEEchhcCCHHH-HHHHHHHHH
Confidence 3577663 23345566889999999999977544221 1122221 1 579999999999864211 112222233
Q ss_pred HcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 136 QFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 136 ~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
..+.+++.+|+.++.|++++.+.+...+.+.
T Consensus 78 ~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 78 EQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 4467889999999999999999988887654
No 367
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.64 E-value=1.7e-06 Score=65.21 Aligned_cols=156 Identities=16% Similarity=0.256 Sum_probs=88.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-----------------CCCCccC----Cccce----EEEEEEE-cCeEEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH-----------------FVDEYDP----TIEDS----YRKQVVI-DGETALLDIL 56 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-----------------~~~~~~~----~~~~~----~~~~~~~-~~~~~~~~~~ 56 (191)
++-|.|+|+.-+||||||+++...- .+.+..+ |+... ......+ ++-.++++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 5678999999999999999995322 2111111 11111 1122233 5677889999
Q ss_pred eCCChh--------h-----------------HHH----HHHhhccc--CCEEEEEEeCCC----hhhHHHHH-HHHHHH
Q psy11135 57 DTAGQE--------E-----------------YSA----MRDQYMRT--GEGFLLVFAVNS----MKSFEDIG-SYREQI 100 (191)
Q Consensus 57 D~~g~~--------~-----------------~~~----~~~~~~~~--~~~~i~v~d~~~----~~s~~~~~-~~~~~~ 100 (191)
|+.|-. + +.. =++..+.. .-++++.-|.+- ++++.... ....++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999800 0 000 01122222 223344444322 23333332 333334
Q ss_pred HhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC--CCCCHHHHHHHHHHHH
Q psy11135 101 KRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK--TRMGVDDAFYTLVREI 163 (191)
Q Consensus 101 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~v~~l~~~i~~~~ 163 (191)
.. -++|+++++|-.+-.. ....+.+.++..+|++++++++.. +..++..++..++..+
T Consensus 177 k~----igKPFvillNs~~P~s-~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 177 KE----IGKPFVILLNSTKPYS-EETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HH----hCCCEEEEEeCCCCCC-HHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 33 3789999999877332 345566788889999999988755 4455666666655544
No 368
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=4.5e-08 Score=73.25 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=33.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC-CCccCC------ccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFV-DEYDPT------IEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
++|+|.+|||||||||+|.+.... ....+. ..+.....+.+++.. .++||||..+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~ 269 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVRE 269 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCc
Confidence 689999999999999999977632 111111 111122223343333 4799999655
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.60 E-value=5e-07 Score=66.93 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=57.4
Q ss_pred eEEEEEEEeCCChhhH--------HHHHHh----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11135 49 ETALLDILDTAGQEEY--------SAMRDQ----YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGN 116 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~--------~~~~~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~n 116 (191)
..+.+.++||||.... ...... .....+..++|.|++... +.+.. ...+... -.+.-+|+|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhh----CCCCEEEEE
Confidence 3456889999995421 111111 123467778888887532 22222 2222221 135589999
Q ss_pred cCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 117 KCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 117 K~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
|.|... ..-.+...+...+.|+.+++ .|++++++-.
T Consensus 268 KlD~t~---~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTA---KGGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCC---CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 999654 23344556677799999988 7777776644
No 370
>PRK13796 GTPase YqeH; Provisional
Probab=98.60 E-value=9.6e-07 Score=66.85 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=63.7
Q ss_pred hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH----HHHHHc
Q psy11135 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ----ELAEQF 137 (191)
Q Consensus 62 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~----~~~~~~ 137 (191)
+++...........+.+++++|+.+.. ..|...+..+. .+.|+++|+||+|+.+.....+... .+++..
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence 345555555444445889999997743 12333333322 2579999999999976544444433 335566
Q ss_pred CC---CEEEeccCCCCCHHHHHHHHHHH
Q psy11135 138 NI---PFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 138 ~~---~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
|+ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999998664
No 371
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=2.2e-06 Score=60.61 Aligned_cols=83 Identities=22% Similarity=0.183 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCC--CCccCCccceEEEEEEEc-CeEEEEEEEeCCChhhHH------HHHHhhc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN--HFV--DEYDPTIEDSYRKQVVID-GETALLDILDTAGQEEYS------AMRDQYM 72 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~------~~~~~~~ 72 (191)
.-|.++|++++|||+|+|.+.+. .+. ....+++.........+. +....+.++||+|..... ......+
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l 87 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFAL 87 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHH
Confidence 35789999999999999999988 442 222333332222222221 223458899999965321 2222333
Q ss_pred cc--CCEEEEEEeCCC
Q psy11135 73 RT--GEGFLLVFAVNS 86 (191)
Q Consensus 73 ~~--~~~~i~v~d~~~ 86 (191)
.. ++.+++..+...
T Consensus 88 ~~llss~~i~n~~~~~ 103 (224)
T cd01851 88 ATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHhCEEEEeccCcc
Confidence 33 777777666654
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.54 E-value=2.6e-07 Score=68.75 Aligned_cols=95 Identities=15% Similarity=0.070 Sum_probs=55.9
Q ss_pred EEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.++||+|....+. ..... ....+.+++|.|++.... .......+.... .+--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~~----~~~giIlTKlD~~~-- 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEAV----GIDGVILTKVDADA-- 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhcC----CCCEEEEeeecCCC--
Confidence 4578999999653211 11121 224678888988866331 122222222211 24588999999865
Q ss_pred cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 125 VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
..-.+-.++...+.|+.+++ .|++++++..
T Consensus 294 -~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 -KGGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 22233445556688988887 6888877654
No 373
>PRK12289 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.8e-07 Score=70.15 Aligned_cols=23 Identities=48% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-++|+|++|||||||||+|.+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc
Confidence 37899999999999999999765
No 374
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.51 E-value=2.1e-07 Score=70.29 Aligned_cols=125 Identities=15% Similarity=0.115 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHH-------
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD------- 69 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~------- 69 (191)
-+++++|.+|||||||+|++.+... .+..+.++.... ....++. +.++||||.........
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~~~~~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGIINSHQMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCCChhHhhhhcCHHHH
Confidence 3799999999999999999997542 223333332221 2223222 46899999654322111
Q ss_pred -hhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC
Q psy11135 70 -QYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN 138 (191)
Q Consensus 70 -~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 138 (191)
... +......+..+....-.+..+.. ..+.......+.+.+++.+.....-.......+.+..|
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~-----~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g 296 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLAR-----FDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHLG 296 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEE-----EEEecCCceEEEEEccCCceeEeechhhhHHHHHhhcC
Confidence 111 12344444444433222222211 01122235567788888776653222222333344444
No 375
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=7e-07 Score=58.52 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=50.7
Q ss_pred hhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK 147 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 147 (191)
..+..+|++++++|+.++.+.. .+..++. .. ..+.|+++|+||+|+.+.. ......+.....+.+++++|+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~---~~--~~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVK---EV--DPRKKNILLLNKADLLTEE-QRKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHH---hc--cCCCcEEEEEechhcCCHH-HHHHHHHHHHhcCCeEEEEEec
Confidence 4478899999999998865432 2233322 21 1468999999999986422 1223344555667889999998
Q ss_pred CCCC
Q psy11135 148 TRMG 151 (191)
Q Consensus 148 ~~~~ 151 (191)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 7753
No 376
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.49 E-value=3.5e-06 Score=64.52 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=47.7
Q ss_pred EEEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.+.+.++||||....+. ....+ ....+.+++|.|++-... .......+... -.+--+|+||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~----~~~~g~IlTKlD~~a- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDS----VDVGSVIITKLDGHA- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhc----cCCcEEEEECccCCC-
Confidence 45788999999553322 11111 224677889998865322 12222333321 236789999999754
Q ss_pred ccCHHHHHHHHHHcCCCEEEec
Q psy11135 124 AVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+-......+.|+.+++
T Consensus 254 --rgG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 254 --KGGGALSAVAATKSPIIFIG 273 (429)
T ss_pred --CccHHhhhHHHHCCCeEEEc
Confidence 12223445555666665544
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.49 E-value=2.4e-06 Score=57.10 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred EEEEEEEeCCChhhHHHHHHhh--------cccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQY--------MRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
.....++|++|..+........ ....+.++++.|..+.... .....+..++.. .=++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 3456789999977655444321 2347888999997653321 111222222322 23779999995
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.48 E-value=1.3e-06 Score=63.38 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=57.7
Q ss_pred EEEEEEEeCCChhhHHHHH--------Hh----hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135 50 TALLDILDTAGQEEYSAMR--------DQ----YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~--------~~----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (191)
.+.+.++||||....+... .. .....+.+++|.|++... +.+. ....+.+.. .+.-+|+||
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~-~~~~f~~~~----~~~g~IlTK 226 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALE-QAKVFNEAV----GLTGIILTK 226 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHH-HHHHHHhhC----CCCEEEEEc
Confidence 3568899999965332211 11 112378899999997532 2222 223333211 256899999
Q ss_pred CCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 118 CDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 118 ~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
.|... ..-.+..+....+.|+.+++ .|++++++..
T Consensus 227 lDe~~---~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 227 LDGTA---KGGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred cCCCC---CccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 99865 23344555667788988888 6777766543
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.47 E-value=3.8e-07 Score=65.27 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|.+|||||||+|++.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 57899999999999999999765
No 380
>KOG1534|consensus
Probab=98.47 E-value=6.2e-07 Score=61.24 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=60.0
Q ss_pred EEEEeCCChhhH-------HHHHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 53 LDILDTAGQEEY-------SAMRDQYMRTGEGFLLVFAVNSMK---SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 53 ~~~~D~~g~~~~-------~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
+-++|+|||-+. ..+.++.-..---+..||-+..+- +...+.-.+..+.... .-..|-|-|++|+|+..
T Consensus 100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi-~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI-SLEVPHINVLSKMDLLK 178 (273)
T ss_pred EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH-HhcCcchhhhhHHHHhh
Confidence 567999997652 223333322222233444443322 2222222333333322 23689999999999865
Q ss_pred CccCHHHHHH-------------------------------HHHHcC-CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 123 WAVDMNQAQE-------------------------------LAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 123 ~~~~~~~~~~-------------------------------~~~~~~-~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
. ...++.+. +...++ +.|++....+.+.++.++..|...++=
T Consensus 179 ~-~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy 252 (273)
T KOG1534|consen 179 D-KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQY 252 (273)
T ss_pred h-hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHh
Confidence 2 11111111 112223 468888888888899988888877753
No 381
>KOG1491|consensus
Probab=98.45 E-value=6.1e-07 Score=65.45 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=53.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEc---------------CeEEEEEEEeCCChhhHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVID---------------GETALLDILDTAGQEEYSA 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~D~~g~~~~~~ 66 (191)
.++|.++|.|++|||||+|+|..... +..++.++-+.....+.+. .....++++|++|.-.-.+
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 57999999999999999999998774 4445444333222222221 2345689999998443221
Q ss_pred ----HHH---hhcccCCEEEEEEeC
Q psy11135 67 ----MRD---QYMRTGEGFLLVFAV 84 (191)
Q Consensus 67 ----~~~---~~~~~~~~~i~v~d~ 84 (191)
+.. ..++.+|+++.|+++
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEe
Confidence 222 226778999888775
No 382
>KOG0447|consensus
Probab=98.45 E-value=4.6e-05 Score=59.45 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=54.2
Q ss_pred EEEEEeCCCh-------------hhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135 52 LLDILDTAGQ-------------EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118 (191)
Q Consensus 52 ~~~~~D~~g~-------------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (191)
...++|.||. +....+...+..+.+++|+|+-=.. .+.-+.....+...+...+...|+|+||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 5778999992 2344577888999999999885333 22233444445555666788899999999
Q ss_pred CCCCCcc-CHHHHHHHHH
Q psy11135 119 DLSTWAV-DMNQAQELAE 135 (191)
Q Consensus 119 D~~~~~~-~~~~~~~~~~ 135 (191)
|+....+ ++..++.+..
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 9987544 3444444443
No 383
>KOG0460|consensus
Probab=98.43 E-value=7e-06 Score=60.17 Aligned_cols=139 Identities=20% Similarity=0.192 Sum_probs=84.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC---C-C--CCCcc-----CCc---c---ceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN---H-F--VDEYD-----PTI---E---DSYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~---~-~--~~~~~-----~~~---~---~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
-++|.-+|+...|||||-.++... . . ...|. |.. + ......+.....+ +.-.|+||+.+|-
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~Rh--YaH~DCPGHADYI 131 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRH--YAHTDCPGHADYI 131 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccc--cccCCCCchHHHH
Confidence 478889999999999998887531 1 0 01111 100 0 1111222223333 5678999999988
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc----cCHHHHHHHHHHcC---
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA----VDMNQAQELAEQFN--- 138 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~--- 138 (191)
...-......|+.|+|+..+|......-..++ +.+... -..+++.+||.|+.+.. .-.-+.+++...+|
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLL--LARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 77677788899999999999954322222221 112111 24689999999998522 12234556666665
Q ss_pred --CCEEEeccC
Q psy11135 139 --IPFIKTSAK 147 (191)
Q Consensus 139 --~~~~~~s~~ 147 (191)
+|++.-||+
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 578776655
No 384
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.40 E-value=2e-07 Score=67.44 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=34.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC-----C--CccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFV-----D--EYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
.+++|++|||||||+|+|.+.... + ...+...++....+.+++.. .++||||..+
T Consensus 167 svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 167 TVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred EEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 578999999999999999864311 1 11222223334445565444 3689999655
No 385
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.36 E-value=4.2e-07 Score=66.60 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-.++++|++|+|||||+|.|.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh
Confidence 468999999999999999998765
No 386
>KOG0467|consensus
Probab=98.35 E-value=1.2e-06 Score=70.07 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCC-ccCCc-----------c-ceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-VDE-YDPTI-----------E-DSY-RKQVVIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~~-~~~~~-----------~-~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
+|+++-+...|||||+..|....- .+. -.++. . .+. ...+..-.+.+.+.++|+|||.++.+...
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 678999999999999999976542 111 11110 0 000 00111223556789999999999999988
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
....-+|+.++++|+...- ......+.+.+...+...++|+||+|-
T Consensus 91 sas~l~d~alvlvdvvegv-----~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGV-----CSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhcCCcEEEEeecccc-----chhHHHHHHHHHHccCceEEEEehhhh
Confidence 8888899999999996622 111122222122335678999999993
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.34 E-value=8.6e-07 Score=67.10 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
-+++++|.+|||||||+|+|.+... .+..++|+.... .+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~--~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKI--EIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeE--EEEcCCC---cEEEECCCcc
Confidence 3689999999999999999986431 223333433322 2233333 3589999964
No 388
>PRK01889 GTPase RsgA; Reviewed
Probab=98.32 E-value=4.3e-06 Score=63.15 Aligned_cols=83 Identities=19% Similarity=0.156 Sum_probs=58.2
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcCCCEEEeccCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFNIPFIKTSAKTRM 150 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 150 (191)
.+++|.+++|+++..+-....+..++..... .+++.++|+||+|+.+. ..+....+.. ..+++++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED--AEEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCcEEEEECCCCc
Confidence 6789999999999754444445555444433 36778999999999753 1112222222 457899999999999
Q ss_pred CHHHHHHHHH
Q psy11135 151 GVDDAFYTLV 160 (191)
Q Consensus 151 ~v~~l~~~i~ 160 (191)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888874
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=3.7e-05 Score=60.34 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=50.8
Q ss_pred EEEEEEEeCCChhhHHHH----HHhhc-ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 50 TALLDILDTAGQEEYSAM----RDQYM-RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~----~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
.+.+.|+||+|....+.. ..... ......++|++.+. +...+...+..+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~-- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG-- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc--
Confidence 356889999995432211 11110 11234556666654 23333343333332 246789999999854
Q ss_pred cCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 125 VDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..-.+.......+.++.+++ +|..+
T Consensus 499 -~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 499 -RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred -chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 33556666777788877766 34444
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.28 E-value=1.1e-06 Score=64.71 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-.++++|++|+|||||+|+|.+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999998765
No 391
>KOG3859|consensus
Probab=98.26 E-value=1.2e-05 Score=57.41 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=41.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-----EEEEEEcCeEEEEEEEeCCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-----RKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~~g 60 (191)
.|+|+.+|..|.|||||+..|++..+.....++..... .+...-.+....+.++||.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 58999999999999999999998886443333322221 22223356677889999999
No 392
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.8e-05 Score=67.20 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=61.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCC-CCC--Cc--cCCccceEEEEEEEcCeEEEEEEEeCCC----hh----hHHHHHHh---
Q psy11135 7 VVVGAGGVGKSALTIQLIQNH-FVD--EY--DPTIEDSYRKQVVIDGETALLDILDTAG----QE----EYSAMRDQ--- 70 (191)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~-~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~~~--- 70 (191)
+|+|++|+||||++..--..- +.. .. ....+ +......+.+.. .++||+| ++ .-...|..
T Consensus 129 ~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~dea---VlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEA---VLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred EEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcccccce---EEEcCCcceecccCcchhhHHHHHHHHH
Confidence 689999999999976542211 111 11 11111 122333344444 4689888 21 11112221
Q ss_pred ------hcccCCEEEEEEeCCChh-----h----HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 71 ------YMRTGEGFLLVFAVNSMK-----S----FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 71 ------~~~~~~~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
-.+..+++++..++.+.- . ...++.-+.++.... .-..|+++++||.|+.+
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEecccccc
Confidence 144589999999985511 1 122333344444432 24689999999999986
No 393
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.21 E-value=7.3e-05 Score=55.54 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=58.0
Q ss_pred EEEEEEeCCChhhHHHHHHhhcc--------cCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMR--------TGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
+...++++.|..........+.. ..|+++-++|..+-.. ...+......-..+ .=++|+||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 45668999997776554444333 2577888999877433 22122333222232 238999999998
Q ss_pred CCccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHH
Q psy11135 122 TWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 122 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~ 157 (191)
... ..+..+...++++ ++++.++. ......+++.
T Consensus 159 ~~~-~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 159 DAE-ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CHH-HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 744 2444555556655 56777765 4444444444
No 394
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=2.7e-05 Score=58.86 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC---CCCc--cCCccce--------------EEEEEE-E-----------cCeEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF---VDEY--DPTIEDS--------------YRKQVV-I-----------DGETALL 53 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~---~~~~--~~~~~~~--------------~~~~~~-~-----------~~~~~~~ 53 (191)
.++++|++|+||||++..|..... .... .-+.... ...... . .-....+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 578999999999999999864321 0000 0000000 000000 0 0123357
Q ss_pred EEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCC----CcEEEEEecCCCCC
Q psy11135 54 DILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNS-MKSFEDIGSYREQIKRVKDAEE----VPMVLVGNKCDLST 122 (191)
Q Consensus 54 ~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~----~p~ivv~nK~D~~~ 122 (191)
.++||+|....+. ..... .....-.++|.+.+. .+....+ +..+......+. .+-=+|.||.|...
T Consensus 219 VLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 219 VLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred EEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 8899999553222 22221 122344567777766 3333333 323322111110 13467889999865
Q ss_pred CccCHHHHHHHHHHcCCCEEEec
Q psy11135 123 WAVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+..+....+.|+.+++
T Consensus 296 ---~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ---NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ---CccHHHHHHHHHCcCeEEEe
Confidence 34455566667777766655
No 395
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.20 E-value=0.0001 Score=50.31 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=58.4
Q ss_pred eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHH
Q psy11135 49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMN 128 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 128 (191)
..+.+.++|+|+.... .....+..+|.++++...+.. +...+..+++.+... +.|+.+|+|+.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~~--~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF----GIPVGVVINKYDLNDE--IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc----CCCEEEEEeCCCCCcc--hHH
Confidence 4567899999975432 233456789999999888743 455555655555442 4678999999997542 345
Q ss_pred HHHHHHHHcCCCEEE
Q psy11135 129 QAQELAEQFNIPFIK 143 (191)
Q Consensus 129 ~~~~~~~~~~~~~~~ 143 (191)
+.+++.++++++++-
T Consensus 162 ~~~~~~~~~~~~vl~ 176 (179)
T cd03110 162 EIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHcCCCeEE
Confidence 667778888887653
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.19 E-value=3.5e-05 Score=58.17 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=77.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc----ceEEE---------------EEE--E----------cCeEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE----DSYRK---------------QVV--I----------DGETALL 53 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~----~~~~~---------------~~~--~----------~~~~~~~ 53 (191)
.|+++|+.||||||-+..|...-.......... +.+.. .+. . .-..+.+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d~ 284 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCDV 284 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCCE
Confidence 478999999999999888764433111111000 00000 000 0 1123358
Q ss_pred EEEeCCChhhHHH----HHHhhccc--CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135 54 DILDTAGQEEYSA----MRDQYMRT--GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM 127 (191)
Q Consensus 54 ~~~D~~g~~~~~~----~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 127 (191)
.++||.|...++. ....++.. ..-+.++++++... ..+...+..+... ..-=+++||.|... +.
T Consensus 285 ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~-----~i~~~I~TKlDET~---s~ 354 (407)
T COG1419 285 ILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF-----PIDGLIFTKLDETT---SL 354 (407)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC-----CcceeEEEcccccC---ch
Confidence 8999999654433 22333322 23345666666532 3444544444432 12357889999865 44
Q ss_pred HHHHHHHHHcCCCEEEec--cCCCCCHHHHH-HHHHHHHHhh
Q psy11135 128 NQAQELAEQFNIPFIKTS--AKTRMGVDDAF-YTLVREIKKD 166 (191)
Q Consensus 128 ~~~~~~~~~~~~~~~~~s--~~~~~~v~~l~-~~i~~~~~~~ 166 (191)
-....+.-..+.|+.+++ ..=++++...- .+|++.+...
T Consensus 355 G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 355 GNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred hHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcc
Confidence 445555555565555444 33344443332 2455555443
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.17 E-value=5.9e-06 Score=63.75 Aligned_cols=84 Identities=14% Similarity=0.043 Sum_probs=48.4
Q ss_pred EEEEEeCCChhhHHHH----HHh--hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135 52 LLDILDTAGQEEYSAM----RDQ--YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~----~~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (191)
.+.++||+|....+.. ... ....++.+++|+|.+... ........+.... ...-+|+||.|...
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a--- 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA--- 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC---
Confidence 6789999995543221 111 133578888999986642 2222233332211 13467889999754
Q ss_pred CHHHHHHHHHHcCCCEEEec
Q psy11135 126 DMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+-.+....+.|+.+++
T Consensus 247 ~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred cccHHHHHHHHHCcCEEEEe
Confidence 23345556667777776665
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.16 E-value=6e-05 Score=52.15 Aligned_cols=85 Identities=16% Similarity=0.104 Sum_probs=47.7
Q ss_pred EEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.++||+|....+. ....+ ....+-+++|.+++.... .+.. ........ .+--+|.||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~-~~~~~~~~----~~~~lIlTKlDet~-- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQ-ALAFYEAF----GIDGLILTKLDETA-- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHH-HHHHHHHS----STCEEEEESTTSSS--
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHH-HHHHhhcc----cCceEEEEeecCCC--
Confidence 4578999999443221 11111 114677888888876432 2222 22222211 13367799999864
Q ss_pred cCHHHHHHHHHHcCCCEEEec
Q psy11135 125 VDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+-.+....+.|+-.++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE
T ss_pred -CcccceeHHHHhCCCeEEEE
Confidence 33455666777788877666
No 399
>KOG0465|consensus
Probab=98.14 E-value=8.4e-06 Score=63.88 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=67.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-----CCCCccC-Cc----------c-ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-----FVDEYDP-TI----------E-DSYRKQVVIDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-----~~~~~~~-~~----------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
+|.+.-+-.+||||+-++++... +...... ++ + +....-..+....+.+.++|||||.++.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 35566677899999999876332 1111000 00 0 000011122233666899999999988776
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
.+..++--|+.+++++....-.- .....++++.++ +.|.+..+||+|-
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqs-Qt~tV~rQ~~ry----~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVES-QTETVWRQMKRY----NVPRICFINKMDR 168 (721)
T ss_pred ehhhhhhccCeEEEEEcccceeh-hhHHHHHHHHhc----CCCeEEEEehhhh
Confidence 67777778888888877552211 223344455554 6899999999996
No 400
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.13 E-value=0.00014 Score=54.06 Aligned_cols=95 Identities=9% Similarity=0.118 Sum_probs=52.2
Q ss_pred EEEEEEeCCChhhHHHHHHhhcc--------cCCEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMR--------TGEGFLLVFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
....++++.|..+...+...++. ..++++.++|+.+-..... ......++.. .=+||+||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 44567899998776665555422 2477889999876332111 1111122221 238999999988
Q ss_pred CCccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHH
Q psy11135 122 TWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 122 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~ 156 (191)
.. .+......+.++ ++++.++ ........++
T Consensus 164 ~~---~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~ 196 (318)
T PRK11537 164 GE---AEKLRERLARINARAPVYTVV-HGDIDLSLLF 196 (318)
T ss_pred CH---HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence 62 244444445444 4566544 3334444444
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=6e-05 Score=57.88 Aligned_cols=136 Identities=15% Similarity=0.106 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-----CC-------CccCCc-------cceEEEEEE------------EcCeEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-----VD-------EYDPTI-------EDSYRKQVV------------IDGETALL 53 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-----~~-------~~~~~~-------~~~~~~~~~------------~~~~~~~~ 53 (191)
.|+++|+.|+||||++..|.+... .. .+.... ......... ..-....+
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d~ 272 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHM 272 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCCE
Confidence 689999999999999998865321 00 000000 000000000 00122347
Q ss_pred EEEeCCChhhHH----HHHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135 54 DILDTAGQEEYS----AMRDQYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM 127 (191)
Q Consensus 54 ~~~D~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 127 (191)
.++||+|....+ .....+. ....-.++|.+.+... ..+......+.. --+-=+|+||.|... ..
T Consensus 273 VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~-----~~~~~~I~TKlDEt~---~~ 342 (420)
T PRK14721 273 VLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG-----HGIHGCIITKVDEAA---SL 342 (420)
T ss_pred EEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeeeCCC---Cc
Confidence 789999944321 2222221 2234567888887422 223333322222 124578899999865 44
Q ss_pred HHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 128 NQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 128 ~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
-.+-.+....+.|+.+++ +|.++
T Consensus 343 G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 343 GIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred cHHHHHHHHhCCCEEEEE--CCCCc
Confidence 455667777788877766 34444
No 402
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.12 E-value=2.2e-05 Score=51.84 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (191)
|.++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998853
No 403
>KOG1424|consensus
Probab=98.11 E-value=5e-06 Score=63.89 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQ 61 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (191)
+.|.++|.|+|||||+||+|.+.+..+... |....++.. +.+. .. +.+.|+||.
T Consensus 315 vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT-i~ls-~~--v~LCDCPGL 369 (562)
T KOG1424|consen 315 VTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT-IFLS-PS--VCLCDCPGL 369 (562)
T ss_pred eEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE-EEcC-CC--ceecCCCCc
Confidence 779999999999999999999998543322 222222222 2222 22 568999994
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=0.00016 Score=54.85 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=48.4
Q ss_pred EEEEEEeCCChhhH-----HHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEY-----SAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~-----~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.++||+|.... ..+.... ....+.+++|.|++-.. ..+......+.. -..-=+|+||.|...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~-----~~idglI~TKLDET~-- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETA-- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC-----CCCCEEEEEcccCCC--
Confidence 46889999995431 1222211 12346677888775422 233333333332 124578899999865
Q ss_pred cCHHHHHHHHHHcCCCEEEec
Q psy11135 125 VDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+-.++...+.|+.+++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 33445566777787766655
No 405
>PRK13695 putative NTPase; Provisional
Probab=98.07 E-value=0.00023 Score=48.31 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=31.3
Q ss_pred CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 106 AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 106 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
..+.|++++.+|.. .......+....+..+++++ .+|=+++.+.+++.+
T Consensus 124 ~~~~~~i~v~h~~~------~~~~~~~i~~~~~~~i~~~~---~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 124 DSEKPVIATLHRRS------VHPFVQEIKSRPGGRVYELT---PENRDSLPFEILNRL 172 (174)
T ss_pred hCCCeEEEEECchh------hHHHHHHHhccCCcEEEEEc---chhhhhHHHHHHHHH
Confidence 34679999999843 22345556666667777775 344457777777654
No 406
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=6e-05 Score=56.86 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=46.4
Q ss_pred EEEEEEeCCChhhHH----HHHHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEYS----AMRDQYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~----~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.++||+|....+ .....+.. ..+.+++|.+.+. ....+......+.. -.+--+|.||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f~~-----l~i~glI~TKLDET~-- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKLAE-----IPIDGFIITKMDETT-- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhcCc-----CCCCEEEEEcccCCC--
Confidence 568899999964222 11222222 2355555655532 22223332222211 124578899999764
Q ss_pred cCHHHHHHHHHHcCCCEEEec
Q psy11135 125 VDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+-.++...+.|+.+++
T Consensus 357 -~~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 34455667777888877766
No 407
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=6.8e-05 Score=61.38 Aligned_cols=138 Identities=20% Similarity=0.163 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CC-----------CccCCc-------cceEEEEEE-E-----------cCeEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-VD-----------EYDPTI-------EDSYRKQVV-I-----------DGETALL 53 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~-----------~~~~~~-------~~~~~~~~~-~-----------~~~~~~~ 53 (191)
-|+|+|+.|+||||.+..|..... .. .+.... ......... . ....+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 478999999999999998874321 00 000000 000000000 0 0122357
Q ss_pred EEEeCCChhh----HHHHHHhh--cccCCEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135 54 DILDTAGQEE----YSAMRDQY--MRTGEGFLLVFAVNS-MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126 (191)
Q Consensus 54 ~~~D~~g~~~----~~~~~~~~--~~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 126 (191)
.|+||+|... ........ ....+-.++|.|.+. .+.+. +....+..... --+-=+|+||.|... .
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~---~i~~~f~~~~~--~~i~glIlTKLDEt~---~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN---EVVHAYRHGAG--EDVDGCIITKLDEAT---H 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH---HHHHHHhhccc--CCCCEEEEeccCCCC---C
Confidence 8999999321 11222221 223455678888765 33333 33333322110 014468899999865 3
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 127 MNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
.-.+-.+....+.|+.+++ +|++|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 3445566777788877766 44444
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.06 E-value=1.7e-06 Score=58.97 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=42.3
Q ss_pred EEEEEEeCCChhhHHHH--HH---hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135 51 ALLDILDTAGQEEYSAM--RD---QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~--~~---~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (191)
....++++.|....... .. ...-..+.++.++|..+-.........+.....+ .=++|+||+|+.+...
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~~~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSDEQ 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCChhh
Confidence 34566788885544333 00 1122467888999997754333343333333332 2389999999876332
Q ss_pred CHHHHHHHHHHcC
Q psy11135 126 DMNQAQELAEQFN 138 (191)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (191)
..+...+..++.+
T Consensus 159 ~i~~~~~~ir~ln 171 (178)
T PF02492_consen 159 KIERVREMIRELN 171 (178)
T ss_dssp -HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHC
Confidence 2244444444443
No 409
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.06 E-value=7.4e-05 Score=50.68 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=46.4
Q ss_pred EEEEEEEeCCChhhHH----HHHHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEYS----AMRDQYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.+.+.++|++|....+ .....+. ...+.+++|++...... .......+.... + ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~- 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA- 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC-
Confidence 3457789999964221 1112221 24888999999865432 223333333221 2 3577779999765
Q ss_pred ccCHHHHHHHHHHcCCCEEE
Q psy11135 124 AVDMNQAQELAEQFNIPFIK 143 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~ 143 (191)
........+...++|+..
T Consensus 154 --~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 --RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred --CcchhhhhHHHHCcCeEe
Confidence 222333366666766544
No 410
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.06 E-value=0.00016 Score=56.02 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=48.9
Q ss_pred EEEEEEeCCChhhHH----HHHHhhcc---cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 51 ALLDILDTAGQEEYS----AMRDQYMR---TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~----~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
+.+.++||+|....+ .....++. ...-.++|++.+... ..+...+..+... .+--++.||.|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~-----~~~~vI~TKlDet~- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL-----PLDGLIFTKLDETS- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC-----CCCEEEEecccccc-
Confidence 468899999954322 12222233 234566777775532 2333333333221 13468999999854
Q ss_pred ccCHHHHHHHHHHcCCCEEEec
Q psy11135 124 AVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s 145 (191)
....+..+....+.|+.+++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT 391 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe
Confidence 33456677778888877766
No 411
>KOG0464|consensus
Probab=98.05 E-value=1.9e-06 Score=64.72 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-----CCCccCCc-c-----------ceEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-----VDEYDPTI-E-----------DSYRKQVVIDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-----~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
+|.++..-.+||||.-.+++.-.- .....+.+ . +....-+.++.+.+.+.++||||+.++.-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 577889999999999999863221 11111111 0 111223445666667999999999998888
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP 140 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 140 (191)
.+.+++--|+++.|||.+..-.-..+.-|.+. ...++|-+.++||+|..... .......+..++++.
T Consensus 119 verclrvldgavav~dasagve~qtltvwrqa-----dk~~ip~~~finkmdk~~an-fe~avdsi~ekl~ak 185 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQA-----DKFKIPAHCFINKMDKLAAN-FENAVDSIEEKLGAK 185 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCcccceeeeehhc-----cccCCchhhhhhhhhhhhhh-hhhHHHHHHHHhCCc
Confidence 88888899999999999875444444444322 23478999999999987533 223345555666653
No 412
>KOG0459|consensus
Probab=97.98 E-value=1.3e-05 Score=60.09 Aligned_cols=153 Identities=20% Similarity=0.198 Sum_probs=85.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-CCC------------------Ccc----CCcc-------ceEEEEEEEcCeEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH-FVD------------------EYD----PTIE-------DSYRKQVVIDGETAL 52 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~------------------~~~----~~~~-------~~~~~~~~~~~~~~~ 52 (191)
-++++|+|...+||||+-..+.... ... -|. .+.. +.-.....+....-.
T Consensus 79 hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ 158 (501)
T KOG0459|consen 79 HVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKR 158 (501)
T ss_pred CceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEeccee
Confidence 4789999999999999866653211 000 000 0000 000111122223334
Q ss_pred EEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hHHHHHHHH--HHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SFEDIGSYR--EQIKRVKDAEEVPMVLVGNKCDLSTWAVDM 127 (191)
Q Consensus 53 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~--~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 127 (191)
+.+.|.||+..+-...-....++|..+++.++...+ -|+.--+-. ..+.. -.....+|+++||+|...-+-+.
T Consensus 159 ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lak--t~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 159 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK--TAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred EEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHH--hhccceEEEEEEeccCCccCcch
Confidence 888999998887655555566788887887774322 122111111 11111 12245789999999976522222
Q ss_pred HH-------HHHHHHHcC------CCEEEeccCCCCCHHHHHH
Q psy11135 128 NQ-------AQELAEQFN------IPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 128 ~~-------~~~~~~~~~------~~~~~~s~~~~~~v~~l~~ 157 (191)
+. ...|.+.+| .-|+++|..+|.++++...
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 22 233444444 3489999999999887654
No 413
>PRK10867 signal recognition particle protein; Provisional
Probab=97.98 E-value=0.00013 Score=56.29 Aligned_cols=87 Identities=15% Similarity=0.033 Sum_probs=48.6
Q ss_pred EEEEEEEeCCChhhHH----HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEYS----AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.+.+.++||+|....+ .....+ ....+.+++|.|..... ........+.... ...-+|.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~----~i~giIlTKlD~~~- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL----GLTGVILTKLDGDA- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC----CCCEEEEeCccCcc-
Confidence 3568899999943211 111111 12466778888876532 2333333343311 13467779999643
Q ss_pred ccCHHHHHHHHHHcCCCEEEecc
Q psy11135 124 AVDMNQAQELAEQFNIPFIKTSA 146 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s~ 146 (191)
..-.+...+...+.|+.+++.
T Consensus 255 --rgG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 --RGGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 222366677777888766553
No 414
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.98 E-value=6.6e-05 Score=58.59 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=47.6
Q ss_pred EEEEEeCCChhhHHH---HHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135 52 LLDILDTAGQEEYSA---MRDQYMRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~---~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (191)
...++||+|....+. .....+.. ..-.++++|.+... ..+......+.. ...--+|+||.|...
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f~~-----~~~~g~IlTKlDet~--- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAYRG-----PGLAGCILTKLDEAA--- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHhcc-----CCCCEEEEeCCCCcc---
Confidence 467899999332221 11111221 22256777775422 233333222222 224467789999754
Q ss_pred CHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 126 DMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..-.+-.+....+.|+.+++ .|++|
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~V 430 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRV 430 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCC
Confidence 44455667777788877776 45555
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.94 E-value=3e-05 Score=59.76 Aligned_cols=87 Identities=16% Similarity=0.036 Sum_probs=50.4
Q ss_pred EEEEEEEeCCChhhHH----HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEYS----AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.+.+.++||||....+ .....+ ....+.+++|.|..... ........+.... ...=+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~~~- 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDGDA- 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccCcc-
Confidence 3568899999943221 111111 22467788999986532 3334444443322 13467799999643
Q ss_pred ccCHHHHHHHHHHcCCCEEEecc
Q psy11135 124 AVDMNQAQELAEQFNIPFIKTSA 146 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s~ 146 (191)
..-.+..++...+.|+.+++.
T Consensus 254 --~~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 --RGGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --cccHHHHHHHHHCcCEEEEeC
Confidence 223366777788888776553
No 416
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.93 E-value=0.00013 Score=53.23 Aligned_cols=92 Identities=17% Similarity=0.153 Sum_probs=64.1
Q ss_pred HHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH-HHHHHHHHHcCCCEEEe
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM-NQAQELAEQFNIPFIKT 144 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~ 144 (191)
+.+.-..+.|-.++++.+.+|+ ++..+..++-.. ...++.-++++||+|+.+..... ++...+...+|++++.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 3334455577777777777765 445454444333 33467778889999998743333 45667788899999999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy11135 145 SAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~ 162 (191)
|++++.+++++.+.+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999998876543
No 417
>KOG2485|consensus
Probab=97.92 E-value=1.1e-05 Score=58.36 Aligned_cols=59 Identities=29% Similarity=0.452 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC------ccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
+++++|+|-||+|||||+|++........ ..+.........+.+.... .+.+.||||.-
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGil 207 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGIL 207 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCcC
Confidence 68999999999999999999865442211 1111112222223333333 27889999943
No 418
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.85 E-value=0.00036 Score=50.22 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (191)
|+++|.+||||||+.+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999998864
No 419
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.83 E-value=0.0011 Score=49.93 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=25.1
Q ss_pred EEEEEEeCCChhhHHHHHHhhc-------ccCCEEEEEEeCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYM-------RTGEGFLLVFAVNS 86 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~-------~~~~~~i~v~d~~~ 86 (191)
+...++++.|......+...+. -..++++.++|+.+
T Consensus 93 ~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 93 PDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 3566899999877666555542 13578899999864
No 420
>KOG4273|consensus
Probab=97.82 E-value=0.00047 Score=48.76 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=92.8
Q ss_pred EEEEEcCCCC--CHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEE--EEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 5 KLVVVGAGGV--GKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALL--DILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 5 ~i~v~G~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
-++|+|..|+ ||.+++.+|....+.....+...+.+ ..++++++-|.- .+.-.+--+++.-..........++++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~-hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm 84 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEF-HGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM 84 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceee-eceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence 3689999999 99999999987775433322222222 223455444321 111111001111111122334678899
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC----------------------------------
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---------------------------------- 126 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---------------------------------- 126 (191)
+||++....+..+..|+....- .. ---++.++||.|..+....
T Consensus 85 vfdlse~s~l~alqdwl~htdi-ns--fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss 161 (418)
T KOG4273|consen 85 VFDLSEKSGLDALQDWLPHTDI-NS--FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS 161 (418)
T ss_pred EEeccchhhhHHHHhhcccccc-cc--chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence 9999999999999998742210 00 1135677888886442211
Q ss_pred -----------HHHHHHHHHHcCCCEEEeccCC------------CCCHHHHHHHHHHHHHhhhhhhh
Q psy11135 127 -----------MNQAQELAEQFNIPFIKTSAKT------------RMGVDDAFYTLVREIKKDKMLRG 171 (191)
Q Consensus 127 -----------~~~~~~~~~~~~~~~~~~s~~~------------~~~v~~l~~~i~~~~~~~~~~~~ 171 (191)
.....+++.+.|+.+++.++.+ ..|++.+|.++...+.+....+.
T Consensus 162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmilk~ 229 (418)
T KOG4273|consen 162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMILKN 229 (418)
T ss_pred ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCccceecc
Confidence 1123445556677788877632 24788999888777665544443
No 421
>KOG2484|consensus
Probab=97.81 E-value=2.7e-05 Score=58.25 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=37.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 61 (191)
+.+++.|+|.|++||||+||+|..+..........-+..--.+..+ .. +.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~--i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KK--IRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CC--ceeccCCce
Confidence 3689999999999999999999988864433222222211112222 22 678999993
No 422
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.80 E-value=0.00051 Score=48.17 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=43.9
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 131 (191)
.+.++||-.- ..++.+...+++|.+++|.|.+-. ++..... +..+.+... -.++.+|+||.|.. .....
T Consensus 135 e~VivDtEAG--iEHfgRg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~elg--~k~i~~V~NKv~e~-----e~~~~ 203 (255)
T COG3640 135 EVVIVDTEAG--IEHFGRGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAEELG--IKRIFVVLNKVDEE-----EELLR 203 (255)
T ss_pred cEEEEecccc--hhhhccccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHHHhC--CceEEEEEeeccch-----hHHHH
Confidence 3455554321 223334456679999999998663 3333322 223322221 27999999999953 34455
Q ss_pred HHHHHcCCC
Q psy11135 132 ELAEQFNIP 140 (191)
Q Consensus 132 ~~~~~~~~~ 140 (191)
..+...+.+
T Consensus 204 ~~~~~~~~~ 212 (255)
T COG3640 204 ELAEELGLE 212 (255)
T ss_pred hhhhccCCe
Confidence 555666543
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.79 E-value=2.5e-05 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 424
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00014 Score=55.62 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-C--------CC--CccCCcc-------ceEEEE-EEE----------cCeEEEEE
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-F--------VD--EYDPTIE-------DSYRKQ-VVI----------DGETALLD 54 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~--------~~--~~~~~~~-------~~~~~~-~~~----------~~~~~~~~ 54 (191)
.-|+++|++||||||++..|.... . .. .+..... ...... ... ....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886321 0 00 0000000 000000 000 11244578
Q ss_pred EEeCCChhhH--H--HHHHhhcc-----cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc
Q psy11135 55 ILDTAGQEEY--S--AMRDQYMR-----TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 55 ~~D~~g~~~~--~--~~~~~~~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 125 (191)
++||+|.... . ..+..++. ...-.++|.|++... +.+......+.. --+-=+|.||.|...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~-----~~~~glIlTKLDEt~--- 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES-----LNYRRILLTKLDEAD--- 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC-----CCCCEEEEEcccCCC---
Confidence 9999995421 1 11112121 233567788876643 123333322221 124578899999864
Q ss_pred CHHHHHHHHHHcCCCEEEec--cCCCCCHHHHHHH
Q psy11135 126 DMNQAQELAEQFNIPFIKTS--AKTRMGVDDAFYT 158 (191)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~s--~~~~~~v~~l~~~ 158 (191)
..-.+-.+....+.|+.+++ ..-++++...-..
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A~~~ 408 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEVPFDILNATKN 408 (432)
T ss_pred CccHHHHHHHHHCCCEEEEecCCCCCCCHHHhhHH
Confidence 33345566677787766655 3345565555443
No 425
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=8.7e-05 Score=55.37 Aligned_cols=100 Identities=20% Similarity=0.157 Sum_probs=70.4
Q ss_pred EeCCChh-hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH
Q psy11135 56 LDTAGQE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA 134 (191)
Q Consensus 56 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 134 (191)
-+.||+. ++.......+..+|+++-+.|+.++.+-. ...+..+.. +.|.++|+||+|+.+..+..+-.+.+.
T Consensus 15 ~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~ 87 (322)
T COG1161 15 QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFK 87 (322)
T ss_pred cCCCCchHHHHHHHHHhcccCCEEEEEEecccccccc-----CccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHH
Confidence 3447755 56667788899999999999999976522 122223222 345599999999998666555556666
Q ss_pred HHcCCCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 135 EQFNIPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 135 ~~~~~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
++.+...+.+++..+.+...+..++...
T Consensus 88 ~~~~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 88 KEEGIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred hcCCCccEEEEeecccCccchHHHHHHH
Confidence 6667888889999888877777654444
No 426
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=2.5e-05 Score=52.70 Aligned_cols=23 Identities=43% Similarity=0.746 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
||+|+|++|||||||.+.|....
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999997654
No 427
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.77 E-value=2.5e-05 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.||+++|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 428
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00066 Score=49.32 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=49.6
Q ss_pred EEEEEEEeCCChhhH-----HHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEY-----SAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~-----~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
.+.+.++||+|.... ..+.... ....+-+++|.+++... ..+..++..+.. -.+--+|.||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETA- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCC-
Confidence 356889999995521 1222111 12345678888876422 133344444332 234578999999865
Q ss_pred ccCHHHHHHHHHHcCCCEEEec
Q psy11135 124 AVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s 145 (191)
..-.+-.++...+.|+.+++
T Consensus 226 --~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 --SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred --CccHHHHHHHHHCcCEEEEe
Confidence 33345566677787776665
No 429
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.73 E-value=0.00059 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~ 28 (191)
-+++.|++|+|||++++.+...-.
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999986553
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.72 E-value=4.2e-05 Score=42.21 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (191)
.++.|+.|+|||||+.++.-
T Consensus 26 tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998853
No 431
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=3.5e-05 Score=52.18 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
+|+++|++|+|||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.0012 Score=50.44 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=51.2
Q ss_pred EEEEEEEeCCChhhHHH----HHHhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 50 TALLDILDTAGQEEYSA----MRDQYMRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~----~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
.+.+.++||+|....+. ....++.. ..-.++|.|++... ..+...+..... -.+-=+|+||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 35688999999543221 11122222 22577888887742 233333333322 125578999999764
Q ss_pred CccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..-.+-.+....+.|+.+++ .|.++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 33445566677787776665 34444
No 433
>KOG1970|consensus
Probab=97.70 E-value=0.00095 Score=52.34 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=44.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 154 (191)
-.+|++=|+-+....+........+..+......|+|+++|-+-..... -......++-...++..+...+....-++.
T Consensus 195 ~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK 274 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKK 274 (634)
T ss_pred ceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHH
Confidence 3457777776644333333333333344445678999999987654311 111112233344555555555555444555
Q ss_pred HHHHHHHHH
Q psy11135 155 AFYTLVREI 163 (191)
Q Consensus 155 l~~~i~~~~ 163 (191)
.+..|....
T Consensus 275 ~L~ric~~e 283 (634)
T KOG1970|consen 275 FLKRICRIE 283 (634)
T ss_pred HHHHHHHHh
Confidence 554444443
No 434
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.70 E-value=9e-05 Score=49.98 Aligned_cols=135 Identities=20% Similarity=0.373 Sum_probs=61.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeC-CCh----------------------
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDT-AGQ---------------------- 61 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~g~---------------------- 61 (191)
+|++.|++|+||||+++++...-..... .....+.....-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~--~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL--PVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG--GEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC--ccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 6899999999999999998743311110 111122222223344444444454 220
Q ss_pred hhHHHH----HHhhcccCCEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135 62 EEYSAM----RDQYMRTGEGFLLVFAVN-SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ 136 (191)
Q Consensus 62 ~~~~~~----~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 136 (191)
+.+... ....+..++ ++++|-- .-|- ....+...+..... .+.|++.++.+.- .....+.+.+.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl--~~~~F~~~v~~~l~-s~~~vi~vv~~~~------~~~~l~~i~~~ 147 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMEL--KSPGFREAVEKLLD-SNKPVIGVVHKRS------DNPFLEEIKRR 147 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCC--C-CHHHHHHHHHHC-TTSEEEEE--SS--------SCCHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhh--cCHHHHHHHHHHHc-CCCcEEEEEecCC------CcHHHHHHHhC
Confidence 011111 111112333 5666632 2111 01223333444333 5678888877762 12345667777
Q ss_pred cCCCEEEeccCCCCCH
Q psy11135 137 FNIPFIKTSAKTRMGV 152 (191)
Q Consensus 137 ~~~~~~~~s~~~~~~v 152 (191)
.++.+++++..+.+.+
T Consensus 148 ~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 148 PDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTSEEEE--TTTCCCH
T ss_pred CCcEEEEeChhHHhhH
Confidence 7888998887666543
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.67 E-value=0.0006 Score=41.10 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=43.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH-HHhhcccCCEEEEEEeC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM-RDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~ 84 (191)
+++.|.+|+||||+...+...-....+. ...++ .+.++|+++....... .......++.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 6788999999999988876443211111 11122 4678999986543321 13445678888888877
Q ss_pred CCh
Q psy11135 85 NSM 87 (191)
Q Consensus 85 ~~~ 87 (191)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 554
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.66 E-value=4.4e-05 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
|+++|++||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999743
No 437
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.65 E-value=0.00036 Score=37.64 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=27.5
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135 73 RTGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (191)
.-.++++|++|.+... +.+.-...+..+... ..+.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 3478999999998843 455556666666654 23789999999998
No 438
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.62 E-value=7e-05 Score=42.62 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
|++.|++|+||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999997653
No 439
>PRK08233 hypothetical protein; Provisional
Probab=97.61 E-value=7.5e-05 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
|+..-|++.|.+|+|||||.++|...
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhh
Confidence 66788999999999999999999754
No 440
>KOG0469|consensus
Probab=97.60 E-value=9.9e-05 Score=57.08 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCC-CccC------Cccc------eEEE-----------------EEEEcCeEEEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH-FVD-EYDP------TIED------SYRK-----------------QVVIDGETALL 53 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~-~~~-~~~~------~~~~------~~~~-----------------~~~~~~~~~~~ 53 (191)
++-|+.+...|||||-..|.... +.+ ...+ +-.+ .... ...-++..+.+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 34577888999999999997554 211 1000 0000 0000 01124556789
Q ss_pred EEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC--CCccCHHHHH
Q psy11135 54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS--TWAVDMNQAQ 131 (191)
Q Consensus 54 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~ 131 (191)
.++|.||+.++.+.....++-.|+.++|+|-.+.--...-.-+.+.+.. .+.-++++||.|-. +.+++.++..
T Consensus 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhHHHHhhcCCHHHHH
Confidence 9999999999999988889999999999997662211111112222222 23347889999953 3566766654
Q ss_pred H
Q psy11135 132 E 132 (191)
Q Consensus 132 ~ 132 (191)
+
T Consensus 176 q 176 (842)
T KOG0469|consen 176 Q 176 (842)
T ss_pred H
Confidence 3
No 441
>KOG2423|consensus
Probab=97.60 E-value=2.6e-05 Score=58.45 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (191)
+.+.|.++|.|++||||+||+|...+++... |..+++....+..-.+. +-++|+||
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvA-PIpGETKVWQYItLmkr--IfLIDcPG 361 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVA-PIPGETKVWQYITLMKR--IFLIDCPG 361 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhccccccc-CCCCcchHHHHHHHHhc--eeEecCCC
No 442
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.60 E-value=4e-05 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
||+++|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 443
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.59 E-value=7.7e-05 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
|+++|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998755
No 444
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.57 E-value=0.00082 Score=50.55 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
..+|++.|+.|+|||||++++.+.-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHccc
Confidence 3579999999999999999998654
No 445
>PRK01889 GTPase RsgA; Reviewed
Probab=97.56 E-value=9e-05 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
+++++|.+|+|||||++.+.+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 68999999999999999998755
No 446
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.54 E-value=0.0011 Score=52.58 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
+++.||+||||||.++.|...
T Consensus 48 LlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999998754
No 447
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.52 E-value=0.00055 Score=44.70 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=58.7
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-------CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 7 VVVGAGGVGKSALTIQLIQNHFV-------DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 7 ~v~G~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+.-|.+|+|||++.-.+...-.. -+.++... ...+.+.++|+|+... ......+..+|.++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~----------~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vv 71 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLA----------NLDYDYIIIDTGAGIS--DNVLDFFLAADEVI 71 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCC----------CCCCCEEEEECCCCCC--HHHHHHHHhCCeEE
Confidence 35688999999997665422100 01111100 0115688999997543 33345688899998
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
++.+.+.. ++......+..+... ....++.+|+|+.+..
T Consensus 72 iv~~~~~~-s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 72 VVTTPEPT-SITDAYALIKKLAKQ--LRVLNFRVVVNRAESP 110 (139)
T ss_pred EEcCCChh-HHHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence 88887643 344444444444332 1345788999998743
No 448
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.52 E-value=0.0049 Score=43.27 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=51.0
Q ss_pred EEEEEEEeCCChhhHHHHHHhh-cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCccCH
Q psy11135 50 TALLDILDTAGQEEYSAMRDQY-MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAVDM 127 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~ 127 (191)
.+.+.++|++|........... .+.+|.++++...+. .++..+......+.......+.+ ..++.|+.+.. ...
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~---~~~ 191 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD---RET 191 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc---cHH
Confidence 3567788887644322221111 236888888886643 34444444444444432222333 45899999854 344
Q ss_pred HHHHHHHHHcCCCEEE
Q psy11135 128 NQAQELAEQFNIPFIK 143 (191)
Q Consensus 128 ~~~~~~~~~~~~~~~~ 143 (191)
+...++.+.++.+++.
T Consensus 192 ~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 192 ELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 5567788888876654
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00012 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFV 29 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~ 29 (191)
.++++|++|||||||++.+.+-+.+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 4689999999999999999776643
No 450
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.51 E-value=0.00011 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.=|+++|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 447899999999999999998654
No 451
>PRK04195 replication factor C large subunit; Provisional
Probab=97.51 E-value=0.003 Score=49.99 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-+++.|++|+||||+++.+...-
T Consensus 41 ~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999997654
No 452
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.51 E-value=0.0047 Score=42.07 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999998765
No 453
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.50 E-value=0.00053 Score=45.82 Aligned_cols=55 Identities=24% Similarity=0.296 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhccc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 74 (191)
.|++.|++|||||||++.+..-..+ +.+ ...+.++. +.+.+.+.++.....+...
T Consensus 31 ~iaitGPSG~GKStllk~va~Lisp-----~~G-----~l~f~Ge~-----vs~~~pea~Rq~VsY~~Q~ 85 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLISP-----TSG-----TLLFEGED-----VSTLKPEAYRQQVSYCAQT 85 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccCC-----CCc-----eEEEcCcc-----ccccChHHHHHHHHHHHcC
Confidence 4789999999999999998754422 212 23455555 3455666666655544433
No 454
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.50 E-value=0.00013 Score=55.89 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-+|+|+|.+|+|||||+++|...
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 455
>PRK14530 adenylate kinase; Provisional
Probab=97.49 E-value=0.00012 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=21.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|..-+|+++|++||||||+.+.|..
T Consensus 1 ~~~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 1 MSQPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3455899999999999999999864
No 456
>PRK06217 hypothetical protein; Validated
Probab=97.48 E-value=0.00012 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.+|+|+|.+||||||+.++|....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 479999999999999999997553
No 457
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.48 E-value=0.00099 Score=49.97 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
..+|+|.|.+|+|||||++++...-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999997644
No 458
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.47 E-value=0.00014 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
|+++|++|||||||++-+-+-.-
T Consensus 34 vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 34 VAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEECCCCCCHHHHHHHHhcccC
Confidence 68999999999999999965543
No 459
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.46 E-value=0.00016 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~ 28 (191)
.++++|++|+|||||+|-+.+-+.
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 578999999999999999987664
No 460
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.46 E-value=0.00013 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.-|+++|++|||||||++.|....
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcC
Confidence 457899999999999999997543
No 461
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.46 E-value=0.00012 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 47899999999999999998765
No 462
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.45 E-value=0.00013 Score=46.65 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 463
>PRK03839 putative kinase; Provisional
Probab=97.44 E-value=0.00014 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
+|+++|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 464
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00015 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998664
No 465
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.42 E-value=0.0022 Score=47.02 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCCh-----------------------
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------------------- 61 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------------------- 61 (191)
.++++|++|.|||++++++...+.... .+. .. .+.+..+.+|..
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-~~-----------~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~ 129 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQS-DED-AE-----------RIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR 129 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-Cc-----------cccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC
Confidence 578999999999999999998664322 111 11 112334444431
Q ss_pred -hhHHHHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135 62 -EEYSAMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117 (191)
Q Consensus 62 -~~~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (191)
..........++...+=++++|--+ ..+....+..++.+......-++|+|.|||.
T Consensus 130 ~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 130 VAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1112223355666777788888533 1223334444555544444557899999875
No 466
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.39 E-value=0.0019 Score=39.81 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=47.7
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 6 LVVVG-AGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 6 i~v~G-~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
|++.| ..|+||||+...+...-..... + ......+.. +.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-~------vl~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK-R------VLLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC-c------EEEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 6699999997776532211110 0 001111111 567899999865332 33667789999888877
Q ss_pred CChhhHHHHHHHHH
Q psy11135 85 NSMKSFEDIGSYRE 98 (191)
Q Consensus 85 ~~~~s~~~~~~~~~ 98 (191)
+. .++..+..+++
T Consensus 72 ~~-~s~~~~~~~~~ 84 (104)
T cd02042 72 SP-LDLDGLEKLLE 84 (104)
T ss_pred CH-HHHHHHHHHHH
Confidence 54 34555555544
No 467
>PRK14531 adenylate kinase; Provisional
Probab=97.39 E-value=0.00021 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988644
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.38 E-value=0.00018 Score=46.88 Aligned_cols=21 Identities=43% Similarity=0.768 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
|+++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 469
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.38 E-value=0.0002 Score=50.82 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++|+|+|+|||||||+...|...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998654
No 470
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.37 E-value=0.00017 Score=48.88 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=27.8
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 76 EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
|+++++.|+.++.+-.. ..+...+ . ....+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~-~-l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAV-L-QAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHH-H-hccCCCCEEEEEehhhcCCH
Confidence 68999999987532111 1222221 1 12235799999999999753
No 471
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00012 Score=49.40 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
=+++.||+|+||||++++|....
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998766
No 472
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.37 E-value=0.012 Score=38.61 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 36899999999999999998765
No 473
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.0002 Score=53.29 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++|++|||||||++.+.+-+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 57899999999999999987663
No 474
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.37 E-value=0.00085 Score=49.54 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------ccCCccceEEEEEE------------E------c
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE-----------------YDPTIEDSYRKQVV------------I------D 47 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~------------~------~ 47 (191)
++-|+++|-.|+||||-|-.|...-.... +......+....+. + .
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 57799999999999999988743211000 00000100000000 0 1
Q ss_pred CeEEEEEEEeCCChh--------hHHHHHH----hhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy11135 48 GETALLDILDTAGQE--------EYSAMRD----QYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLV 114 (191)
Q Consensus 48 ~~~~~~~~~D~~g~~--------~~~~~~~----~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv 114 (191)
...+.+.++||+|-. +...+.+ ......+-++++.|++-.. ++... +.+..... --=++
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA----k~F~eav~----l~GiI 290 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA----KIFNEAVG----LDGII 290 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH----HHHHHhcC----CceEE
Confidence 234568899999922 1111111 1112234478888887643 33333 22333221 22578
Q ss_pred EecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135 115 GNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 115 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l 155 (191)
+||.|-..+- -.+-.++..+++|+.++.. |++++++
T Consensus 291 lTKlDgtAKG---G~il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 291 LTKLDGTAKG---GIILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred EEecccCCCc---ceeeeHHHHhCCCEEEEeC--CCChhhc
Confidence 8999954311 1233467788888887762 4444444
No 475
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.36 E-value=0.00017 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.|+++|++|+|||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999996653
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.36 E-value=0.00019 Score=48.97 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 477
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.36 E-value=0.0012 Score=42.64 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998764
No 478
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.34 E-value=0.00024 Score=46.45 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.|+|+|+.|+|||||+..|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.00023 Score=45.92 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFV 29 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~ 29 (191)
-.+++.|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999876643
No 480
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00025 Score=49.67 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
+.+.|++.|++|||||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999764
No 481
>PRK13949 shikimate kinase; Provisional
Probab=97.34 E-value=0.00023 Score=48.13 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
+|+++|++|+||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 482
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.0012 Score=45.48 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=59.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCC-ccCCccceEEEEEEEcCeEEEEEEEeCCCh---hhHHH-----HHHhhcccCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETALLDILDTAGQ---EEYSA-----MRDQYMRTGE 76 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---~~~~~-----~~~~~~~~~~ 76 (191)
|++.|.||||||||.+.|...-.... ........+. ...+||-.-. +.+.. ......+..+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~----------~~i~~DEslpi~ke~yres~~ks~~rlldSalk 73 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL----------RGILWDESLPILKEVYRESFLKSVERLLDSALK 73 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh----------hheecccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 67999999999999988754321111 1111111011 1234553321 11111 1112222334
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC---------CCccCHHHHHHHHHHc
Q psy11135 77 GFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS---------TWAVDMNQAQELAEQF 137 (191)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---------~~~~~~~~~~~~~~~~ 137 (191)
--+++.|.+| ....+..++.........++-|+-.++-+. ...+..+...++...+
T Consensus 74 n~~VIvDdtN-----YyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~Rf 138 (261)
T COG4088 74 NYLVIVDDTN-----YYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred ceEEEEeccc-----HHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence 4456667666 444555555444445567877777766541 1345666666666554
No 483
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.0018 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
|++.|++|+||||+++.+...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987554
No 484
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00018 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
.+++|++|||||||++.+-.-.
T Consensus 36 TAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred EEEECCCCcCHHHHHHHHHhhc
Confidence 5899999999999999886543
No 485
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.33 E-value=0.00021 Score=44.16 Aligned_cols=20 Identities=35% Similarity=0.840 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~ 24 (191)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 47899999999999999986
No 486
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.33 E-value=0.0066 Score=42.82 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=62.6
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCH
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSF--EDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM 127 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 127 (191)
.+.+.|+|+.|..... ....+..+|.+++-.-.+..+.- .....|+.++.. .....+|.-|+.|+..-.......
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~-~~~~~ip~~Vl~Tr~~~~~~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK-AERRDIPAAVLFTRVPAARLTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEEecCCcchhhHHH
Confidence 3568899999854332 34446678888887766643322 222344444432 345678999999998743212222
Q ss_pred HHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 128 NQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 128 ~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
....++.+ ++|++.+...+.....+++.
T Consensus 160 ~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 22333333 48888888888777777776
No 487
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.33 E-value=0.0026 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|++|+||||+++.+.+..
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998654
No 488
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.32 E-value=0.00022 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
+++++|+|++|||||+|+..++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999988754
No 489
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.32 E-value=0.013 Score=39.64 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=50.1
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 131 (191)
.+.++|+|+..... ....+..+|.++++.+.+.. +...+..++..+... ......+|+|+.+.... ...+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~-~~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV-EGGDMVE 136 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHc---CCceEEEEEeCCccccc-chhhHHH
Confidence 57889999854332 33446788999888877653 344444444444331 12357789999986542 2222245
Q ss_pred HHHHHcCCCEE
Q psy11135 132 ELAEQFNIPFI 142 (191)
Q Consensus 132 ~~~~~~~~~~~ 142 (191)
.+.+.++.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 56666777654
No 490
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.31 E-value=0.0012 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.047 Sum_probs=19.9
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++||.+++=+.+++..+.....+.
T Consensus 179 PTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhC
Confidence 489999999999999888777653
No 491
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.30 E-value=0.00022 Score=48.60 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-|+++|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
No 492
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.30 E-value=0.0012 Score=41.93 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-|++-|+-|+|||||++.+...-
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998654
No 493
>KOG1533|consensus
Probab=97.29 E-value=0.00042 Score=48.57 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy11135 4 YKLVVVGAGGVGKSALTIQL 23 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l 23 (191)
+--+|+|+||+||||..+-.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred cceEEEcCCCCCccchhhhH
Confidence 55689999999999987654
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.28 E-value=0.00034 Score=48.91 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
..-|++.|++|||||||++.+.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999764
No 495
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.28 E-value=0.0003 Score=47.67 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
+.-+|+++|++|+||||+.+.+...
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHH
Confidence 3457999999999999999999754
No 496
>PRK14532 adenylate kinase; Provisional
Probab=97.28 E-value=0.00027 Score=48.60 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999754
No 497
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.27 E-value=0.00026 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
|++.|++|||||||++.+.+.-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999997653
No 498
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.27 E-value=0.00028 Score=47.98 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.++++|+.|+|||||++.+..
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 578999999999999998863
No 499
>PTZ00301 uridine kinase; Provisional
Probab=97.26 E-value=0.00036 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHH
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~ 24 (191)
|+-+=|++.|.+|||||||.+.+.
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~ 24 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIV 24 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHH
Confidence 667889999999999999998775
No 500
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.26 E-value=0.00029 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
|+++|++|+|||+|++.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988643
Done!