Query psy11135
Match_columns 191
No_of_seqs 119 out of 1660
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 18:53:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.1E-42 1E-46 240.3 18.2 165 1-166 11-177 (216)
2 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-38 6.2E-43 217.5 23.5 187 2-191 3-189 (189)
3 2bov_A RAla, RAS-related prote 100.0 2.2E-38 7.7E-43 219.9 23.3 190 1-190 12-206 (206)
4 2gf0_A GTP-binding protein DI- 100.0 1.6E-37 5.6E-42 214.5 18.6 168 2-169 7-175 (199)
5 1u8z_A RAS-related protein RAL 100.0 1.3E-35 4.4E-40 199.5 21.6 165 1-165 2-167 (168)
6 2bcg_Y Protein YP2, GTP-bindin 100.0 1.9E-35 6.5E-40 205.3 22.6 166 3-169 8-175 (206)
7 1kao_A RAP2A; GTP-binding prot 100.0 9.5E-36 3.2E-40 199.9 20.3 165 1-165 1-166 (167)
8 1c1y_A RAS-related protein RAP 100.0 6.5E-36 2.2E-40 200.9 19.2 164 1-164 1-166 (167)
9 3kkq_A RAS-related protein M-R 100.0 2.1E-35 7.2E-40 201.4 21.8 165 1-165 16-182 (183)
10 3con_A GTPase NRAS; structural 100.0 4.4E-35 1.5E-39 201.0 23.4 168 1-168 19-186 (190)
11 2ce2_X GTPase HRAS; signaling 100.0 4.6E-35 1.6E-39 196.3 22.8 165 1-165 1-165 (166)
12 3oes_A GTPase rhebl1; small GT 100.0 2.3E-36 7.8E-41 209.3 15.9 168 2-169 23-191 (201)
13 2nzj_A GTP-binding protein REM 100.0 5.5E-35 1.9E-39 197.8 22.1 167 1-167 2-171 (175)
14 2a9k_A RAS-related protein RAL 100.0 4.2E-35 1.4E-39 200.3 21.7 168 1-168 16-184 (187)
15 2fn4_A P23, RAS-related protei 100.0 2.3E-35 7.9E-40 200.6 20.2 166 2-167 8-174 (181)
16 3t5g_A GTP-binding protein RHE 100.0 1.1E-35 3.8E-40 202.5 18.3 167 2-168 5-172 (181)
17 1x3s_A RAS-related protein RAB 100.0 4.4E-35 1.5E-39 201.6 20.3 172 2-173 14-186 (195)
18 3ihw_A Centg3; RAS, centaurin, 100.0 1.7E-34 5.9E-39 197.2 21.6 161 1-167 18-182 (184)
19 3q72_A GTP-binding protein RAD 100.0 9.9E-35 3.4E-39 195.0 19.3 164 2-166 1-165 (166)
20 2atv_A RERG, RAS-like estrogen 100.0 1.4E-34 4.9E-39 199.5 20.4 165 2-167 27-193 (196)
21 2iwr_A Centaurin gamma 1; ANK 100.0 3.2E-34 1.1E-38 194.7 21.4 162 1-168 5-172 (178)
22 1vg8_A RAS-related protein RAB 100.0 2.1E-34 7.2E-39 200.1 20.4 169 2-170 7-180 (207)
23 2j0v_A RAC-like GTP-binding pr 100.0 4.3E-35 1.5E-39 204.4 16.4 166 2-169 8-184 (212)
24 3q3j_B RHO-related GTP-binding 100.0 6.5E-35 2.2E-39 203.8 17.3 166 1-168 25-206 (214)
25 2g3y_A GTP-binding protein GEM 100.0 6.3E-34 2.1E-38 197.9 21.9 164 2-165 36-203 (211)
26 3c5c_A RAS-like protein 12; GD 100.0 1E-34 3.5E-39 198.8 17.6 163 2-165 20-186 (187)
27 3reg_A RHO-like small GTPase; 100.0 4.1E-34 1.4E-38 196.8 20.3 164 2-167 22-190 (194)
28 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.9E-34 6.6E-39 196.9 18.4 165 1-167 3-182 (186)
29 3tkl_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 194.8 22.1 167 3-170 16-184 (196)
30 1z06_A RAS-related protein RAB 100.0 8.5E-34 2.9E-38 194.5 21.2 165 1-165 18-188 (189)
31 1ek0_A Protein (GTP-binding pr 100.0 3.7E-34 1.3E-38 192.7 18.7 162 1-163 1-167 (170)
32 3bc1_A RAS-related protein RAB 100.0 2.1E-33 7.3E-38 193.0 22.6 166 3-168 11-188 (195)
33 2ew1_A RAS-related protein RAB 100.0 1.3E-33 4.4E-38 195.4 21.6 163 3-166 26-190 (201)
34 3q85_A GTP-binding protein REM 100.0 6.2E-34 2.1E-38 191.7 19.4 164 3-166 2-168 (169)
35 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.7E-33 1.3E-37 189.2 23.3 164 2-165 6-174 (177)
36 3cbq_A GTP-binding protein REM 100.0 8.7E-34 3E-38 195.4 20.3 165 2-166 22-189 (195)
37 2hup_A RAS-related protein RAB 100.0 1.4E-33 4.8E-38 195.3 21.2 163 3-166 29-194 (201)
38 2q3h_A RAS homolog gene family 100.0 3.9E-34 1.3E-38 197.9 18.4 165 2-168 19-198 (201)
39 2fu5_C RAS-related protein RAB 100.0 3E-34 1E-38 195.7 16.9 165 3-168 8-174 (183)
40 2efe_B Small GTP-binding prote 100.0 2.5E-33 8.5E-38 190.7 21.2 164 2-166 11-176 (181)
41 1g16_A RAS-related protein SEC 100.0 1.1E-33 3.8E-38 190.5 19.1 164 2-166 2-166 (170)
42 1z0f_A RAB14, member RAS oncog 100.0 3.4E-33 1.2E-37 189.6 21.6 162 3-165 15-178 (179)
43 1r2q_A RAS-related protein RAB 100.0 1E-33 3.5E-38 190.6 18.8 162 2-164 5-168 (170)
44 2bme_A RAB4A, RAS-related prot 100.0 2.8E-33 9.7E-38 191.3 21.1 164 3-167 10-175 (186)
45 2g6b_A RAS-related protein RAB 100.0 4.7E-33 1.6E-37 189.2 21.9 164 2-166 9-175 (180)
46 2j1l_A RHO-related GTP-binding 100.0 1.1E-33 3.9E-38 197.5 19.2 164 2-167 33-211 (214)
47 2atx_A Small GTP binding prote 100.0 2.1E-33 7E-38 193.3 20.3 161 3-165 18-193 (194)
48 3tw8_B RAS-related protein RAB 100.0 1.7E-33 5.8E-38 191.4 19.6 167 3-171 9-177 (181)
49 2a5j_A RAS-related protein RAB 100.0 1.9E-33 6.5E-38 193.1 19.8 164 2-166 20-185 (191)
50 1z08_A RAS-related protein RAB 100.0 1.3E-33 4.5E-38 190.2 18.1 163 2-165 5-169 (170)
51 1zbd_A Rabphilin-3A; G protein 100.0 1.1E-32 3.8E-37 190.9 23.2 164 3-167 8-173 (203)
52 1z0j_A RAB-22, RAS-related pro 100.0 2.8E-33 9.5E-38 188.5 19.6 162 2-164 5-168 (170)
53 3cpj_B GTP-binding protein YPT 100.0 1.1E-33 3.8E-38 198.7 18.3 166 3-169 13-180 (223)
54 1z2a_A RAS-related protein RAB 100.0 2E-33 6.9E-38 188.9 18.7 162 2-165 4-167 (168)
55 2erx_A GTP-binding protein DI- 100.0 1.4E-33 4.7E-38 190.3 17.7 164 2-165 2-167 (172)
56 2hxs_A RAB-26, RAS-related pro 100.0 7.7E-34 2.6E-38 192.7 16.4 167 1-167 4-175 (178)
57 1m7b_A RND3/RHOE small GTP-bin 100.0 1E-33 3.5E-38 193.4 16.9 162 2-165 6-183 (184)
58 2y8e_A RAB-protein 6, GH09086P 100.0 1.7E-33 5.9E-38 191.0 17.7 164 1-165 12-177 (179)
59 2gf9_A RAS-related protein RAB 100.0 5.2E-33 1.8E-37 190.6 19.8 163 3-166 22-186 (189)
60 2oil_A CATX-8, RAS-related pro 100.0 5.8E-33 2E-37 190.9 19.9 163 3-166 25-189 (193)
61 2f7s_A C25KG, RAS-related prot 100.0 3.1E-33 1.1E-37 195.6 18.7 166 3-168 25-202 (217)
62 2o52_A RAS-related protein RAB 100.0 2.8E-33 9.4E-38 193.6 18.2 164 3-167 25-190 (200)
63 3dz8_A RAS-related protein RAB 100.0 1.4E-33 4.9E-38 193.7 16.6 163 3-166 23-187 (191)
64 2yc2_C IFT27, small RAB-relate 100.0 1.6E-33 5.3E-38 195.7 16.9 171 2-172 19-199 (208)
65 2cjw_A GTP-binding protein GEM 100.0 8.5E-33 2.9E-37 190.0 20.3 166 2-167 5-174 (192)
66 3cph_A RAS-related protein SEC 100.0 1E-32 3.4E-37 192.4 20.6 164 3-167 20-184 (213)
67 2p5s_A RAS and EF-hand domain 100.0 7.1E-33 2.4E-37 191.4 19.4 163 2-165 27-197 (199)
68 2fg5_A RAB-22B, RAS-related pr 100.0 3.5E-33 1.2E-37 191.9 17.7 163 2-165 22-186 (192)
69 1gwn_A RHO-related GTP-binding 100.0 2.9E-33 1E-37 194.2 17.1 162 2-165 27-204 (205)
70 2fv8_A H6, RHO-related GTP-bin 100.0 5.5E-33 1.9E-37 193.1 18.5 164 1-166 23-201 (207)
71 3clv_A RAB5 protein, putative; 100.0 2.6E-32 9E-37 189.0 21.8 161 2-165 6-204 (208)
72 2il1_A RAB12; G-protein, GDP, 100.0 9E-33 3.1E-37 189.9 18.8 162 3-165 26-190 (192)
73 2gco_A H9, RHO-related GTP-bin 100.0 1.9E-32 6.5E-37 189.6 20.4 161 2-164 24-199 (201)
74 4gzl_A RAS-related C3 botulinu 100.0 3.7E-33 1.2E-37 193.6 16.5 161 1-163 28-203 (204)
75 1ky3_A GTP-binding protein YPT 100.0 2.3E-32 7.9E-37 185.9 20.0 165 2-166 7-179 (182)
76 3bwd_D RAC-like GTP-binding pr 100.0 6.7E-34 2.3E-38 193.7 11.2 161 2-164 7-180 (182)
77 4bas_A ADP-ribosylation factor 100.0 4.2E-32 1.4E-36 187.3 14.9 163 2-167 16-191 (199)
78 1r8s_A ADP-ribosylation factor 100.0 1.8E-31 6.1E-36 178.8 15.9 157 4-165 1-162 (164)
79 4djt_A GTP-binding nuclear pro 100.0 4.2E-32 1.4E-36 190.0 13.2 167 2-169 10-179 (218)
80 1zd9_A ADP-ribosylation factor 100.0 1.4E-31 4.7E-36 183.4 15.2 160 2-165 21-185 (188)
81 1m2o_B GTP-binding protein SAR 100.0 3.6E-31 1.2E-35 181.6 16.8 156 2-162 22-189 (190)
82 3t1o_A Gliding protein MGLA; G 100.0 1.2E-31 4.1E-36 184.7 14.5 161 3-167 14-194 (198)
83 1ksh_A ARF-like protein 2; sma 100.0 6.5E-31 2.2E-35 179.6 17.9 160 2-166 17-181 (186)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.3E-31 4.6E-36 184.9 14.5 156 2-162 24-196 (198)
85 3gj0_A GTP-binding nuclear pro 100.0 3E-32 1E-36 191.2 11.1 165 2-169 14-179 (221)
86 1upt_A ARL1, ADP-ribosylation 100.0 1.4E-30 4.8E-35 175.5 18.1 160 2-166 6-170 (171)
87 1zj6_A ADP-ribosylation factor 100.0 3.2E-31 1.1E-35 181.4 14.5 162 2-168 15-181 (187)
88 2h57_A ADP-ribosylation factor 100.0 1.2E-30 4.1E-35 178.9 17.0 160 2-165 20-187 (190)
89 1fzq_A ADP-ribosylation factor 100.0 1.4E-30 4.6E-35 177.4 15.9 159 2-165 15-178 (181)
90 2b6h_A ADP-ribosylation factor 100.0 1.1E-30 3.7E-35 179.5 14.8 158 2-164 28-190 (192)
91 2wkq_A NPH1-1, RAS-related C3 100.0 4E-30 1.4E-34 190.4 18.5 161 3-165 155-330 (332)
92 3l0i_B RAS-related protein RAB 100.0 2.7E-33 9.4E-38 193.5 1.3 162 3-165 33-196 (199)
93 2h17_A ADP-ribosylation factor 100.0 1.5E-30 5E-35 177.2 13.9 156 2-162 20-180 (181)
94 3th5_A RAS-related C3 botulinu 99.9 3.6E-33 1.2E-37 193.6 0.0 160 2-163 29-203 (204)
95 2f9l_A RAB11B, member RAS onco 100.0 4.2E-29 1.4E-33 172.5 20.1 164 3-167 5-170 (199)
96 2x77_A ADP-ribosylation factor 100.0 1.7E-30 5.8E-35 178.0 12.1 161 2-167 21-186 (189)
97 1moz_A ARL1, ADP-ribosylation 100.0 2.2E-30 7.4E-35 176.5 12.5 160 2-166 17-181 (183)
98 3llu_A RAS-related GTP-binding 100.0 5E-30 1.7E-34 176.7 11.4 159 2-163 19-195 (196)
99 2fh5_B SR-beta, signal recogni 100.0 1.1E-28 3.9E-33 172.1 18.0 159 2-162 6-213 (214)
100 2zej_A Dardarin, leucine-rich 100.0 3E-30 1E-34 176.2 9.7 164 3-168 2-181 (184)
101 2wji_A Ferrous iron transport 100.0 2.4E-29 8.1E-34 168.8 12.7 153 1-163 1-163 (165)
102 3o47_A ADP-ribosylation factor 100.0 6.3E-29 2.1E-33 183.5 13.0 159 2-165 164-327 (329)
103 3r7w_A Gtpase1, GTP-binding pr 100.0 1.5E-28 5.2E-33 179.9 14.4 164 2-167 2-183 (307)
104 1oix_A RAS-related protein RAB 100.0 1.2E-27 4.1E-32 164.2 18.0 160 3-163 29-190 (191)
105 2qu8_A Putative nucleolar GTP- 100.0 2.2E-27 7.5E-32 167.1 18.4 165 2-171 28-211 (228)
106 2cxx_A Probable GTP-binding pr 100.0 2.2E-28 7.5E-33 167.4 12.7 158 4-168 2-187 (190)
107 3lvq_E ARF-GAP with SH3 domain 100.0 7.6E-28 2.6E-32 187.0 15.0 159 2-165 321-484 (497)
108 3c5h_A Glucocorticoid receptor 100.0 2.3E-29 7.7E-34 180.0 5.0 162 2-164 18-254 (255)
109 2lkc_A Translation initiation 100.0 1.1E-27 3.7E-32 162.4 13.1 158 2-168 7-174 (178)
110 2wjg_A FEOB, ferrous iron tran 100.0 7E-28 2.4E-32 164.8 11.5 157 1-167 5-171 (188)
111 2dyk_A GTP-binding protein; GT 100.0 3.2E-27 1.1E-31 157.5 13.6 149 4-163 2-160 (161)
112 3a1s_A Iron(II) transport prot 99.9 3.6E-27 1.2E-31 168.6 12.7 154 1-164 3-166 (258)
113 1svi_A GTP-binding protein YSX 99.9 1.3E-26 4.4E-31 159.3 14.8 154 3-164 23-194 (195)
114 3i8s_A Ferrous iron transport 99.9 6.6E-28 2.3E-32 173.9 8.4 156 1-165 1-169 (274)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 4.4E-28 1.5E-32 176.4 7.5 163 5-174 1-183 (331)
116 2gj8_A MNME, tRNA modification 99.9 1.5E-27 5.2E-32 161.0 8.6 154 2-165 3-166 (172)
117 3iev_A GTP-binding protein ERA 99.9 4E-26 1.4E-30 167.2 16.3 159 3-166 10-183 (308)
118 3iby_A Ferrous iron transport 99.9 2.1E-27 7.3E-32 169.5 8.6 150 4-162 2-164 (256)
119 3pqc_A Probable GTP-binding pr 99.9 6.4E-26 2.2E-30 155.7 14.7 155 3-165 23-194 (195)
120 3dpu_A RAB family protein; roc 99.9 9.9E-27 3.4E-31 182.1 11.1 162 1-167 39-210 (535)
121 3b1v_A Ferrous iron uptake tra 99.9 1.1E-26 3.9E-31 166.9 10.1 151 3-164 3-163 (272)
122 3k53_A Ferrous iron transport 99.9 2.4E-26 8.3E-31 165.7 10.9 157 1-165 1-166 (271)
123 3gee_A MNME, tRNA modification 99.9 5.5E-25 1.9E-29 168.9 13.7 155 3-164 233-397 (476)
124 4dhe_A Probable GTP-binding pr 99.9 4.5E-25 1.5E-29 154.7 12.0 159 3-168 29-214 (223)
125 1wf3_A GTP-binding protein; GT 99.9 9E-25 3.1E-29 159.2 14.0 155 2-165 6-173 (301)
126 2hjg_A GTP-binding protein ENG 99.9 1.6E-24 5.4E-29 165.7 14.1 157 3-166 175-350 (436)
127 2e87_A Hypothetical protein PH 99.9 1.4E-23 4.8E-28 156.7 18.1 162 3-169 167-340 (357)
128 4dcu_A GTP-binding protein ENG 99.9 2.8E-24 9.5E-29 165.2 14.1 158 3-167 195-371 (456)
129 1nrj_B SR-beta, signal recogni 99.9 2.3E-25 7.9E-30 155.7 7.3 142 2-151 11-170 (218)
130 1lnz_A SPO0B-associated GTP-bi 99.9 2.1E-24 7.2E-29 159.4 11.2 159 5-167 160-332 (342)
131 1xzp_A Probable tRNA modificat 99.9 5.6E-24 1.9E-28 163.5 13.4 152 3-165 243-405 (482)
132 1mky_A Probable GTP-binding pr 99.9 1.8E-23 6.3E-28 160.0 15.9 152 5-166 3-167 (439)
133 1cip_A Protein (guanine nucleo 99.9 4.5E-24 1.5E-28 158.2 11.2 118 50-167 192-346 (353)
134 2hjg_A GTP-binding protein ENG 99.9 6E-25 2.1E-29 168.0 5.6 154 1-165 1-165 (436)
135 3sjy_A Translation initiation 99.9 7.9E-23 2.7E-27 154.9 16.4 161 2-165 7-192 (403)
136 3qq5_A Small GTP-binding prote 99.9 1.9E-24 6.6E-29 163.5 6.1 155 3-166 34-197 (423)
137 1wb1_A Translation elongation 99.9 2.6E-22 9E-27 154.8 16.4 155 1-165 17-189 (482)
138 3lxx_A GTPase IMAP family memb 99.9 7.5E-22 2.6E-26 139.8 17.4 160 2-165 28-214 (239)
139 2xtz_A Guanine nucleotide-bind 99.9 2.8E-24 9.6E-29 159.2 5.0 119 49-167 181-347 (354)
140 1ega_A Protein (GTP-binding pr 99.9 6.2E-23 2.1E-27 149.7 12.0 156 2-165 7-175 (301)
141 2xtp_A GTPase IMAP family memb 99.9 2.1E-22 7.3E-27 144.3 14.1 162 2-167 21-210 (260)
142 3ohm_A Guanine nucleotide-bind 99.9 9.1E-23 3.1E-27 149.2 12.2 119 49-167 165-320 (327)
143 3geh_A MNME, tRNA modification 99.9 2.9E-23 9.7E-28 158.9 9.8 152 3-166 224-385 (462)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 1.4E-21 4.8E-26 145.7 17.3 159 4-166 179-355 (364)
145 1mky_A Probable GTP-binding pr 99.9 6E-22 2.1E-26 151.6 14.9 157 3-166 180-356 (439)
146 3lxw_A GTPase IMAP family memb 99.9 1.2E-21 4.2E-26 139.2 15.3 161 2-165 20-208 (247)
147 1zcb_A G alpha I/13; GTP-bindi 99.9 1.9E-22 6.6E-27 149.9 11.5 118 50-167 200-355 (362)
148 1s0u_A EIF-2-gamma, translatio 99.9 5.1E-21 1.7E-25 145.2 18.7 157 2-165 7-198 (408)
149 3cb4_D GTP-binding protein LEP 99.9 1.5E-21 5.1E-26 153.3 15.9 158 3-166 4-183 (599)
150 2ywe_A GTP-binding protein LEP 99.9 2.9E-21 1E-25 151.4 17.5 158 3-166 6-185 (600)
151 4dcu_A GTP-binding protein ENG 99.9 2.4E-23 8E-28 160.1 5.2 154 1-165 21-185 (456)
152 3t5d_A Septin-7; GTP-binding p 99.9 1.6E-22 5.5E-27 145.9 8.8 157 3-164 8-203 (274)
153 2ged_A SR-beta, signal recogni 99.9 6.8E-23 2.3E-27 140.5 6.5 115 2-124 47-172 (193)
154 4fid_A G protein alpha subunit 99.9 1.1E-21 3.6E-26 144.0 12.2 118 48-165 158-328 (340)
155 1kk1_A EIF2gamma; initiation o 99.9 6.8E-21 2.3E-25 144.6 16.4 156 3-165 10-200 (410)
156 3j2k_7 ERF3, eukaryotic polype 99.9 3.2E-21 1.1E-25 147.4 14.6 149 3-157 17-217 (439)
157 3p26_A Elongation factor 1 alp 99.9 8.8E-22 3E-26 152.2 9.9 148 2-154 32-227 (483)
158 1azs_C GS-alpha; complex (lyas 99.9 5E-21 1.7E-25 143.5 13.3 118 51-168 217-388 (402)
159 3izy_P Translation initiation 99.9 1.2E-23 4.1E-28 162.9 -2.4 156 2-164 3-167 (537)
160 2elf_A Protein translation elo 99.9 4.1E-21 1.4E-25 143.6 11.2 146 5-166 23-181 (370)
161 3tr5_A RF-3, peptide chain rel 99.9 1.9E-20 6.6E-25 145.5 14.9 113 3-122 13-148 (528)
162 1d2e_A Elongation factor TU (E 99.9 1E-20 3.6E-25 143.0 13.1 159 2-165 2-195 (397)
163 1jny_A EF-1-alpha, elongation 99.9 1.5E-21 5.1E-26 149.1 8.5 153 2-157 5-205 (435)
164 1g7s_A Translation initiation 99.9 6.8E-21 2.3E-25 149.7 12.4 157 1-165 3-218 (594)
165 2c78_A Elongation factor TU-A; 99.8 1.5E-20 5E-25 142.6 13.3 156 2-164 10-211 (405)
166 2qag_A Septin-2, protein NEDD5 99.8 3.6E-22 1.2E-26 149.0 4.4 158 3-166 37-234 (361)
167 1zun_B Sulfate adenylate trans 99.8 6.4E-20 2.2E-24 140.2 14.8 149 3-155 24-214 (434)
168 3izq_1 HBS1P, elongation facto 99.8 2E-20 6.7E-25 147.8 10.3 149 2-155 166-362 (611)
169 2j69_A Bacterial dynamin-like 99.8 1.8E-19 6.3E-24 144.4 15.4 163 2-168 68-328 (695)
170 2aka_B Dynamin-1; fusion prote 99.8 1.6E-20 5.4E-25 137.1 7.3 156 3-163 26-251 (299)
171 1zo1_I IF2, translation initia 99.8 4.5E-22 1.6E-26 153.0 -1.2 150 2-161 3-163 (501)
172 3def_A T7I23.11 protein; chlor 99.8 2.2E-19 7.6E-24 128.7 12.8 119 1-122 34-165 (262)
173 1f60_A Elongation factor EEF1A 99.8 2.5E-19 8.7E-24 137.5 13.7 148 2-155 6-202 (458)
174 1pui_A ENGB, probable GTP-bind 99.8 9.1E-20 3.1E-24 126.5 10.0 153 3-165 26-199 (210)
175 1udx_A The GTP-binding protein 99.8 4.4E-19 1.5E-23 133.9 13.7 161 5-168 159-328 (416)
176 3avx_A Elongation factor TS, e 99.8 4.1E-19 1.4E-23 146.2 14.0 158 2-164 295-485 (1289)
177 1r5b_A Eukaryotic peptide chai 99.8 3.9E-20 1.3E-24 142.3 7.3 150 3-156 43-243 (467)
178 2dy1_A Elongation factor G; tr 99.8 1.3E-18 4.4E-23 139.0 15.2 127 3-136 9-152 (665)
179 2h5e_A Peptide chain release f 99.8 3.3E-18 1.1E-22 133.1 16.0 116 2-122 12-148 (529)
180 1jwy_B Dynamin A GTPase domain 99.8 1.4E-18 4.9E-23 127.6 12.3 113 51-167 131-264 (315)
181 2qnr_A Septin-2, protein NEDD5 99.8 1.2E-19 4E-24 132.3 4.8 157 3-165 18-214 (301)
182 1dar_A EF-G, elongation factor 99.8 6.2E-18 2.1E-22 135.5 14.9 112 3-122 12-143 (691)
183 3t34_A Dynamin-related protein 99.8 6.2E-19 2.1E-23 131.8 8.2 106 52-160 137-256 (360)
184 1h65_A Chloroplast outer envel 99.8 3.2E-18 1.1E-22 123.2 10.9 118 2-122 38-168 (270)
185 1wxq_A GTP-binding protein; st 99.8 5.1E-19 1.8E-23 133.2 6.7 84 4-87 1-114 (397)
186 3mca_A HBS1, elongation factor 99.8 4E-21 1.4E-25 151.3 -5.2 155 3-163 177-395 (592)
187 2qag_C Septin-7; cell cycle, c 99.7 1.5E-18 5.3E-23 131.0 6.7 157 3-164 31-226 (418)
188 2rdo_7 EF-G, elongation factor 99.7 1.1E-16 3.7E-21 128.5 17.1 114 3-122 10-148 (704)
189 2xex_A Elongation factor G; GT 99.7 5.6E-17 1.9E-21 130.0 15.5 113 3-122 10-141 (693)
190 1u0l_A Probable GTPase ENGC; p 99.7 1.1E-18 3.8E-23 127.3 1.9 133 18-160 32-168 (301)
191 1jal_A YCHF protein; nucleotid 99.7 6.3E-16 2.2E-20 114.5 16.4 145 3-147 2-239 (363)
192 3p32_A Probable GTPase RV1496/ 99.7 1E-17 3.6E-22 124.8 5.6 103 51-165 172-284 (355)
193 2x2e_A Dynamin-1; nitration, h 99.7 3.3E-17 1.1E-21 122.1 5.3 155 3-161 31-254 (353)
194 2www_A Methylmalonic aciduria 99.7 3.2E-17 1.1E-21 121.8 4.3 102 51-164 167-278 (349)
195 2qpt_A EH domain-containing pr 99.7 2.2E-16 7.5E-21 123.5 8.1 116 3-122 65-232 (550)
196 2wsm_A Hydrogenase expression/ 99.7 1.3E-16 4.6E-21 111.3 6.3 151 3-166 30-215 (221)
197 2hf9_A Probable hydrogenase ni 99.6 2.4E-18 8.3E-23 120.6 -3.7 57 109-165 165-224 (226)
198 2dby_A GTP-binding protein; GD 99.6 1.2E-15 4E-20 113.6 10.4 154 4-157 2-254 (368)
199 1yrb_A ATP(GTP)binding protein 99.6 3.5E-15 1.2E-19 106.7 11.5 114 51-166 109-258 (262)
200 3vqt_A RF-3, peptide chain rel 99.6 1.3E-14 4.4E-19 113.5 15.2 110 5-122 33-166 (548)
201 4a9a_A Ribosome-interacting GT 99.6 3.7E-14 1.3E-18 105.6 16.2 150 4-157 73-240 (376)
202 1n0u_A EF-2, elongation factor 99.6 4.3E-15 1.5E-19 121.4 10.6 114 3-121 19-163 (842)
203 3zvr_A Dynamin-1; hydrolase, D 99.6 7.4E-15 2.5E-19 117.7 9.6 154 3-162 51-275 (772)
204 2p67_A LAO/AO transport system 99.6 1.3E-15 4.3E-20 113.0 4.6 102 51-164 149-260 (341)
205 3j25_A Tetracycline resistance 99.5 5.6E-15 1.9E-19 117.6 5.2 113 5-122 4-133 (638)
206 2qm8_A GTPase/ATPase; G protei 99.5 9.6E-14 3.3E-18 102.6 8.2 102 51-164 148-260 (337)
207 4fn5_A EF-G 1, elongation fact 99.5 2.4E-12 8.2E-17 103.8 15.7 112 5-122 15-151 (709)
208 2yv5_A YJEQ protein; hydrolase 99.4 1.9E-12 6.6E-17 94.3 8.8 96 61-160 66-164 (302)
209 2ohf_A Protein OLA1, GTP-bindi 99.4 8.3E-13 2.8E-17 98.8 6.6 87 3-89 22-131 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 3.1E-11 1.1E-15 90.5 14.5 84 3-86 20-127 (392)
211 3l82_B F-box only protein 4; T 99.2 6.5E-12 2.2E-16 85.3 5.0 105 59-165 110-223 (227)
212 3ec1_A YQEH GTPase; atnos1, at 99.2 2.4E-12 8E-17 96.3 0.8 139 3-151 162-317 (369)
213 3h2y_A GTPase family protein; 99.1 2.5E-10 8.4E-15 85.4 9.7 97 60-163 55-158 (368)
214 3l2o_B F-box only protein 4; s 99.1 1.5E-10 5.1E-15 82.5 6.8 106 58-165 194-308 (312)
215 2qag_B Septin-6, protein NEDD5 99.1 4.2E-10 1.4E-14 85.0 9.0 25 4-28 43-67 (427)
216 3h2y_A GTPase family protein; 99.1 5.7E-12 2E-16 94.2 -1.2 134 3-146 160-311 (368)
217 3ec1_A YQEH GTPase; atnos1, at 99.1 2.5E-10 8.7E-15 85.4 6.8 97 60-163 57-160 (369)
218 2j37_W Signal recognition part 99.1 3.9E-10 1.3E-14 87.2 7.4 149 3-162 101-310 (504)
219 1tq4_A IIGP1, interferon-induc 99.0 1.9E-08 6.6E-13 76.0 14.3 156 4-169 70-257 (413)
220 3sop_A Neuronal-specific septi 99.0 7.4E-09 2.5E-13 74.2 11.3 25 3-27 2-26 (270)
221 1puj_A YLQF, conserved hypothe 98.9 6.7E-09 2.3E-13 74.9 9.2 102 55-166 3-107 (282)
222 1puj_A YLQF, conserved hypothe 98.7 9.4E-09 3.2E-13 74.1 5.2 55 3-62 120-176 (282)
223 3dm5_A SRP54, signal recogniti 98.7 3.3E-08 1.1E-12 75.1 7.6 86 51-146 183-274 (443)
224 3cnl_A YLQF, putative uncharac 98.7 1.1E-08 3.9E-13 72.9 3.2 55 4-63 100-156 (262)
225 1f5n_A Interferon-induced guan 98.6 4.9E-08 1.7E-12 76.8 5.2 60 3-62 38-102 (592)
226 2v3c_C SRP54, signal recogniti 98.4 4.6E-07 1.6E-11 69.0 6.9 83 51-144 181-271 (432)
227 3kl4_A SRP54, signal recogniti 98.4 8.7E-08 3E-12 72.8 2.9 91 50-152 179-277 (433)
228 1j8m_F SRP54, signal recogniti 98.4 1.5E-06 5E-11 63.1 8.1 92 50-154 180-280 (297)
229 3cnl_A YLQF, putative uncharac 98.4 1.9E-07 6.6E-12 66.5 3.1 93 58-161 4-97 (262)
230 3szr_A Interferon-induced GTP- 98.3 1.7E-06 5.7E-11 68.8 8.4 24 5-28 47-70 (608)
231 1t9h_A YLOQ, probable GTPase E 98.2 4E-07 1.4E-11 66.2 2.4 86 68-157 80-169 (307)
232 2rcn_A Probable GTPase ENGC; Y 98.1 1.2E-05 4E-10 59.7 8.5 84 71-158 127-212 (358)
233 3e70_C DPA, signal recognition 98.1 5.5E-06 1.9E-10 60.9 5.8 90 53-154 214-309 (328)
234 1bif_A 6-phosphofructo-2-kinas 98.0 8.4E-07 2.9E-11 68.5 -0.1 96 3-102 39-147 (469)
235 3q5d_A Atlastin-1; G protein, 97.9 2.1E-05 7.3E-10 60.0 6.6 23 4-26 68-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.8 1.9E-05 6.3E-10 52.9 3.5 23 5-27 2-24 (178)
237 2xxa_A Signal recognition part 97.7 0.00025 8.6E-09 54.1 9.5 84 50-144 183-273 (433)
238 4dzz_A Plasmid partitioning pr 97.7 1.6E-05 5.6E-10 54.2 2.4 86 51-142 76-162 (206)
239 1t9h_A YLOQ, probable GTPase E 97.7 1.3E-05 4.4E-10 58.3 1.7 23 5-27 175-197 (307)
240 1kgd_A CASK, peripheral plasma 97.7 2.9E-05 1E-09 52.0 3.3 22 5-26 7-28 (180)
241 1lvg_A Guanylate kinase, GMP k 97.6 3.6E-05 1.2E-09 52.4 3.3 22 5-26 6-27 (198)
242 1kht_A Adenylate kinase; phosp 97.6 5E-05 1.7E-09 51.1 3.4 25 1-25 1-25 (192)
243 1tev_A UMP-CMP kinase; ploop, 97.5 6.3E-05 2.2E-09 50.7 3.7 25 1-25 1-25 (196)
244 2yv5_A YJEQ protein; hydrolase 97.5 0.00024 8.3E-09 51.6 7.0 22 5-27 167-188 (302)
245 3a00_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 50.9 3.2 21 6-26 4-24 (186)
246 3tr0_A Guanylate kinase, GMP k 97.5 5.6E-05 1.9E-09 51.5 3.3 22 5-26 9-30 (205)
247 1zp6_A Hypothetical protein AT 97.5 5.3E-05 1.8E-09 51.0 3.1 23 4-26 10-32 (191)
248 2plr_A DTMP kinase, probable t 97.5 8E-05 2.7E-09 50.9 4.0 25 1-25 2-26 (213)
249 1znw_A Guanylate kinase, GMP k 97.5 6.7E-05 2.3E-09 51.4 3.3 22 6-27 23-44 (207)
250 1s96_A Guanylate kinase, GMP k 97.5 7E-05 2.4E-09 51.8 3.3 23 5-27 18-40 (219)
251 1qhx_A CPT, protein (chloramph 97.5 9.5E-05 3.2E-09 49.2 3.7 26 1-26 1-26 (178)
252 1z6g_A Guanylate kinase; struc 97.5 7.5E-05 2.6E-09 51.6 3.3 23 5-27 25-47 (218)
253 3c8u_A Fructokinase; YP_612366 97.4 9.8E-05 3.4E-09 50.6 3.5 25 3-27 22-46 (208)
254 3tau_A Guanylate kinase, GMP k 97.4 9.5E-05 3.3E-09 50.7 3.4 23 5-27 10-32 (208)
255 3ney_A 55 kDa erythrocyte memb 97.4 0.00012 4.2E-09 49.7 3.7 23 4-26 20-42 (197)
256 1htw_A HI0065; nucleotide-bind 97.4 0.0001 3.5E-09 48.3 3.3 23 5-27 35-57 (158)
257 1ex7_A Guanylate kinase; subst 97.4 0.0001 3.6E-09 49.6 3.3 21 6-26 4-24 (186)
258 3cm0_A Adenylate kinase; ATP-b 97.4 0.00014 4.8E-09 48.7 4.0 24 2-25 3-26 (186)
259 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.8E-09 48.6 3.3 23 4-26 5-27 (173)
260 2j41_A Guanylate kinase; GMP, 97.4 0.00013 4.4E-09 49.7 3.6 25 3-27 6-30 (207)
261 2qor_A Guanylate kinase; phosp 97.4 0.00011 3.8E-09 50.1 3.3 23 4-26 13-35 (204)
262 1knq_A Gluconate kinase; ALFA/ 97.4 0.00015 5.3E-09 48.0 3.8 23 3-25 8-30 (175)
263 2bdt_A BH3686; alpha-beta prot 97.4 0.00012 4E-09 49.3 3.3 21 5-25 4-24 (189)
264 1ly1_A Polynucleotide kinase; 97.4 0.00017 5.9E-09 47.9 4.0 22 4-25 3-24 (181)
265 3tif_A Uncharacterized ABC tra 97.3 0.00011 3.6E-09 51.5 2.9 23 5-27 33-55 (235)
266 3kb2_A SPBC2 prophage-derived 97.3 0.00013 4.4E-09 48.1 3.2 22 5-26 3-24 (173)
267 4gp7_A Metallophosphoesterase; 97.3 0.00011 3.7E-09 48.8 2.7 19 6-24 12-30 (171)
268 3lw7_A Adenylate kinase relate 97.3 0.00013 4.3E-09 48.2 3.0 20 4-23 2-21 (179)
269 3fb4_A Adenylate kinase; psych 97.3 0.00015 5E-09 49.9 3.4 22 4-25 1-22 (216)
270 4eun_A Thermoresistant glucoki 97.3 0.00014 4.8E-09 49.5 3.3 23 4-26 30-52 (200)
271 1cke_A CK, MSSA, protein (cyti 97.3 0.00016 5.3E-09 50.1 3.6 22 4-25 6-27 (227)
272 2rcn_A Probable GTPase ENGC; Y 97.3 0.00012 4.1E-09 54.3 3.1 24 5-28 217-240 (358)
273 3asz_A Uridine kinase; cytidin 97.3 0.00017 5.9E-09 49.3 3.7 24 3-26 6-29 (211)
274 3dl0_A Adenylate kinase; phosp 97.3 0.00016 5.4E-09 49.7 3.4 22 4-25 1-22 (216)
275 2onk_A Molybdate/tungstate ABC 97.3 0.00016 5.4E-09 50.8 3.2 23 5-27 26-48 (240)
276 2pcj_A ABC transporter, lipopr 97.3 0.00013 4.4E-09 50.7 2.8 22 6-27 33-54 (224)
277 2bbw_A Adenylate kinase 4, AK4 97.3 0.00018 6E-09 50.6 3.5 21 4-24 28-48 (246)
278 2i3b_A HCR-ntpase, human cance 97.3 0.00016 5.5E-09 48.8 3.1 22 5-26 3-24 (189)
279 1y63_A LMAJ004144AAA protein; 97.3 0.00022 7.5E-09 47.8 3.6 24 3-26 10-33 (184)
280 2v54_A DTMP kinase, thymidylat 97.3 0.00024 8.2E-09 48.3 3.8 25 2-26 3-27 (204)
281 2eyu_A Twitching motility prot 97.3 0.00018 6.1E-09 51.2 3.2 22 5-26 27-48 (261)
282 3vaa_A Shikimate kinase, SK; s 97.3 0.00021 7.3E-09 48.5 3.5 22 4-25 26-47 (199)
283 3sr0_A Adenylate kinase; phosp 97.3 0.00021 7E-09 49.0 3.4 22 4-25 1-22 (206)
284 1sgw_A Putative ABC transporte 97.2 0.00017 5.7E-09 49.8 2.9 22 6-27 38-59 (214)
285 3ec2_A DNA replication protein 97.2 0.00016 5.4E-09 48.3 2.8 23 5-27 40-62 (180)
286 3t61_A Gluconokinase; PSI-biol 97.2 0.00019 6.6E-09 48.8 3.2 22 5-26 20-41 (202)
287 3tlx_A Adenylate kinase 2; str 97.2 0.00025 8.5E-09 49.8 3.9 24 2-25 28-51 (243)
288 1b0u_A Histidine permease; ABC 97.2 0.00017 5.7E-09 51.4 2.9 23 5-27 34-56 (262)
289 2cbz_A Multidrug resistance-as 97.2 0.00016 5.6E-09 50.6 2.9 23 5-27 33-55 (237)
290 2if2_A Dephospho-COA kinase; a 97.2 0.00021 7.1E-09 48.6 3.3 22 4-25 2-23 (204)
291 3gfo_A Cobalt import ATP-bindi 97.2 0.00017 5.8E-09 51.7 2.9 22 6-27 37-58 (275)
292 2rhm_A Putative kinase; P-loop 97.2 0.00027 9.1E-09 47.6 3.8 23 3-25 5-27 (193)
293 2jaq_A Deoxyguanosine kinase; 97.2 0.00023 7.7E-09 48.3 3.4 21 5-25 2-22 (205)
294 3uie_A Adenylyl-sulfate kinase 97.2 0.00021 7.3E-09 48.5 3.3 23 4-26 26-48 (200)
295 1np6_A Molybdopterin-guanine d 97.2 0.00023 7.9E-09 47.4 3.3 22 5-26 8-29 (174)
296 2vli_A Antibiotic resistance p 97.2 0.00013 4.6E-09 48.6 2.2 25 1-25 3-27 (183)
297 2v9p_A Replication protein E1; 97.2 0.00022 7.7E-09 51.7 3.4 22 5-26 128-149 (305)
298 3b85_A Phosphate starvation-in 97.2 0.00017 6E-09 49.4 2.7 22 5-26 24-45 (208)
299 1nks_A Adenylate kinase; therm 97.2 0.00027 9.2E-09 47.5 3.6 22 4-25 2-23 (194)
300 2pze_A Cystic fibrosis transme 97.2 0.00019 6.7E-09 49.9 2.9 23 5-27 36-58 (229)
301 2cdn_A Adenylate kinase; phosp 97.2 0.00029 9.9E-09 47.9 3.7 24 2-25 19-42 (201)
302 1g6h_A High-affinity branched- 97.2 0.00019 6.4E-09 50.9 2.9 23 5-27 35-57 (257)
303 2yvu_A Probable adenylyl-sulfa 97.2 0.00033 1.1E-08 47.0 4.0 25 2-26 12-36 (186)
304 1mv5_A LMRA, multidrug resista 97.2 0.00022 7.4E-09 50.2 3.2 23 5-27 30-52 (243)
305 2olj_A Amino acid ABC transpor 97.2 0.0002 6.7E-09 51.0 2.9 23 5-27 52-74 (263)
306 4g1u_C Hemin import ATP-bindin 97.2 0.00019 6.4E-09 51.2 2.8 23 5-27 39-61 (266)
307 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00023 7.7E-09 50.3 3.2 22 5-26 31-52 (250)
308 2ff7_A Alpha-hemolysin translo 97.2 0.00022 7.5E-09 50.3 3.1 23 5-27 37-59 (247)
309 1e4v_A Adenylate kinase; trans 97.2 0.00024 8.3E-09 48.8 3.3 22 4-25 1-22 (214)
310 1aky_A Adenylate kinase; ATP:A 97.2 0.00028 9.4E-09 48.7 3.6 23 3-25 4-26 (220)
311 1ji0_A ABC transporter; ATP bi 97.2 0.00021 7E-09 50.2 2.9 23 5-27 34-56 (240)
312 1jjv_A Dephospho-COA kinase; P 97.2 0.0003 1E-08 48.0 3.6 22 4-25 3-24 (206)
313 1u0l_A Probable GTPase ENGC; p 97.2 0.00025 8.4E-09 51.5 3.3 23 5-27 171-193 (301)
314 1vpl_A ABC transporter, ATP-bi 97.2 0.00021 7.3E-09 50.6 2.9 23 5-27 43-65 (256)
315 1via_A Shikimate kinase; struc 97.2 0.00026 9E-09 47.0 3.2 21 5-25 6-26 (175)
316 2zu0_C Probable ATP-dependent 97.2 0.00025 8.5E-09 50.6 3.2 22 5-26 48-69 (267)
317 2qi9_C Vitamin B12 import ATP- 97.2 0.00022 7.6E-09 50.3 2.9 23 5-27 28-50 (249)
318 3iij_A Coilin-interacting nucl 97.1 0.00026 8.8E-09 47.2 3.0 23 3-25 11-33 (180)
319 2ghi_A Transport protein; mult 97.1 0.00026 8.8E-09 50.3 3.1 23 5-27 48-70 (260)
320 3aez_A Pantothenate kinase; tr 97.1 0.00028 9.4E-09 51.5 3.3 24 4-27 91-114 (312)
321 2c95_A Adenylate kinase 1; tra 97.1 0.00033 1.1E-08 47.2 3.5 23 3-25 9-31 (196)
322 2ixe_A Antigen peptide transpo 97.1 0.00024 8.2E-09 50.8 2.9 23 5-27 47-69 (271)
323 3trf_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 46.8 3.5 22 4-25 6-27 (185)
324 1gvn_B Zeta; postsegregational 97.1 0.00034 1.2E-08 50.4 3.6 23 3-25 33-55 (287)
325 2ihy_A ABC transporter, ATP-bi 97.1 0.00028 9.7E-09 50.6 3.2 23 5-27 49-71 (279)
326 2wwf_A Thymidilate kinase, put 97.1 0.00031 1.1E-08 48.0 3.2 23 3-25 10-32 (212)
327 1zd8_A GTP:AMP phosphotransfer 97.1 0.00033 1.1E-08 48.6 3.3 23 3-25 7-29 (227)
328 2nq2_C Hypothetical ABC transp 97.1 0.00026 9E-09 50.1 2.9 23 5-27 33-55 (253)
329 3lnc_A Guanylate kinase, GMP k 97.1 0.00017 5.7E-09 50.2 1.9 22 5-26 29-51 (231)
330 2pt5_A Shikimate kinase, SK; a 97.1 0.00038 1.3E-08 45.7 3.4 21 5-25 2-22 (168)
331 4a74_A DNA repair and recombin 97.1 0.00031 1.1E-08 48.6 3.1 23 5-27 27-49 (231)
332 2yz2_A Putative ABC transporte 97.1 0.00027 9.4E-09 50.4 2.9 23 5-27 35-57 (266)
333 2ehv_A Hypothetical protein PH 97.1 0.00033 1.1E-08 49.1 3.2 19 6-24 33-51 (251)
334 2iyv_A Shikimate kinase, SK; t 97.1 0.00034 1.2E-08 46.7 3.2 21 5-25 4-24 (184)
335 1uf9_A TT1252 protein; P-loop, 97.1 0.00049 1.7E-08 46.6 4.0 25 2-26 7-31 (203)
336 1nn5_A Similar to deoxythymidy 97.1 0.0004 1.4E-08 47.5 3.5 23 3-25 9-31 (215)
337 2kjq_A DNAA-related protein; s 97.1 0.00025 8.7E-09 45.9 2.3 23 5-27 38-60 (149)
338 2f1r_A Molybdopterin-guanine d 97.1 0.00017 5.8E-09 47.9 1.5 23 5-27 4-26 (171)
339 2x8a_A Nuclear valosin-contain 97.1 0.00035 1.2E-08 50.0 3.2 21 6-26 47-67 (274)
340 2qt1_A Nicotinamide riboside k 97.1 0.00044 1.5E-08 47.2 3.6 24 3-26 21-44 (207)
341 2pjz_A Hypothetical protein ST 97.1 0.00035 1.2E-08 49.7 3.2 23 5-27 32-54 (263)
342 2jeo_A Uridine-cytidine kinase 97.0 0.00048 1.6E-08 48.4 3.8 24 3-26 25-48 (245)
343 1zak_A Adenylate kinase; ATP:A 97.0 0.00034 1.1E-08 48.3 2.9 23 3-25 5-27 (222)
344 2xb4_A Adenylate kinase; ATP-b 97.0 0.00043 1.5E-08 47.9 3.4 21 5-25 2-22 (223)
345 3jvv_A Twitching mobility prot 97.0 0.00037 1.3E-08 51.8 3.2 22 5-26 125-146 (356)
346 1lw7_A Transcriptional regulat 97.0 0.00032 1.1E-08 52.3 2.9 24 4-27 171-194 (365)
347 3be4_A Adenylate kinase; malar 97.0 0.00043 1.5E-08 47.7 3.3 23 3-25 5-27 (217)
348 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00037 1.3E-08 51.7 3.1 23 6-28 33-55 (359)
349 3r20_A Cytidylate kinase; stru 97.0 0.00045 1.5E-08 48.2 3.2 24 2-25 8-31 (233)
350 3tqc_A Pantothenate kinase; bi 97.0 0.00056 1.9E-08 50.0 3.9 24 3-26 92-115 (321)
351 2pez_A Bifunctional 3'-phospho 97.0 0.00064 2.2E-08 45.2 3.9 24 2-25 4-27 (179)
352 1ixz_A ATP-dependent metallopr 97.0 0.00046 1.6E-08 48.6 3.3 22 6-27 52-73 (254)
353 1vht_A Dephospho-COA kinase; s 97.0 0.00055 1.9E-08 47.1 3.6 23 3-25 4-26 (218)
354 2ze6_A Isopentenyl transferase 97.0 0.00049 1.7E-08 48.7 3.3 21 5-25 3-23 (253)
355 1z47_A CYSA, putative ABC-tran 97.0 0.00045 1.5E-08 51.2 3.2 22 6-27 44-65 (355)
356 1ukz_A Uridylate kinase; trans 97.0 0.00066 2.2E-08 46.1 3.8 22 4-25 16-37 (203)
357 3nh6_A ATP-binding cassette SU 97.0 0.00027 9.1E-09 51.4 1.9 23 5-27 82-104 (306)
358 2p5t_B PEZT; postsegregational 97.0 0.00041 1.4E-08 49.0 2.8 23 3-25 32-54 (253)
359 1xjc_A MOBB protein homolog; s 97.0 0.00057 2E-08 45.2 3.3 22 5-26 6-27 (169)
360 1rz3_A Hypothetical protein rb 97.0 0.00065 2.2E-08 46.2 3.7 22 4-25 23-44 (201)
361 2z0h_A DTMP kinase, thymidylat 97.0 0.00058 2E-08 46.0 3.4 22 5-26 2-23 (197)
362 2pbr_A DTMP kinase, thymidylat 97.0 0.00057 2E-08 45.9 3.4 21 5-25 2-22 (195)
363 2bbs_A Cystic fibrosis transme 97.0 0.00045 1.5E-08 49.9 3.0 23 5-27 66-88 (290)
364 2yyz_A Sugar ABC transporter, 97.0 0.00048 1.6E-08 51.2 3.2 22 6-27 32-53 (359)
365 1rj9_A FTSY, signal recognitio 97.0 0.00051 1.7E-08 49.9 3.3 83 53-145 187-281 (304)
366 2it1_A 362AA long hypothetical 97.0 0.0005 1.7E-08 51.1 3.2 22 6-27 32-53 (362)
367 1odf_A YGR205W, hypothetical 3 96.9 0.00069 2.4E-08 48.9 3.9 23 3-25 31-53 (290)
368 3rlf_A Maltose/maltodextrin im 96.9 0.00051 1.7E-08 51.4 3.2 23 6-28 32-54 (381)
369 3tui_C Methionine import ATP-b 96.9 0.00051 1.8E-08 51.1 3.2 22 6-27 57-78 (366)
370 1ak2_A Adenylate kinase isoenz 96.9 0.00066 2.3E-08 47.3 3.6 23 3-25 16-38 (233)
371 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00074 2.5E-08 47.9 3.9 23 3-25 4-26 (260)
372 2ewv_A Twitching motility prot 96.9 0.00053 1.8E-08 51.3 3.2 22 5-26 138-159 (372)
373 4e22_A Cytidylate kinase; P-lo 96.9 0.00062 2.1E-08 48.1 3.4 21 4-24 28-48 (252)
374 1jbk_A CLPB protein; beta barr 96.9 0.00063 2.1E-08 45.3 3.3 22 5-26 45-66 (195)
375 1v43_A Sugar-binding transport 96.9 0.00056 1.9E-08 51.1 3.2 22 6-27 40-61 (372)
376 1g29_1 MALK, maltose transport 96.9 0.00055 1.9E-08 51.1 3.2 23 6-28 32-54 (372)
377 1e6c_A Shikimate kinase; phosp 96.9 0.00068 2.3E-08 44.7 3.3 21 5-25 4-24 (173)
378 2gza_A Type IV secretion syste 96.9 0.00052 1.8E-08 51.2 3.0 23 5-27 177-199 (361)
379 2bwj_A Adenylate kinase 5; pho 96.9 0.0007 2.4E-08 45.7 3.4 22 4-25 13-34 (199)
380 1sq5_A Pantothenate kinase; P- 96.9 0.00074 2.5E-08 49.2 3.7 23 4-26 81-103 (308)
381 1qf9_A UMP/CMP kinase, protein 96.9 0.00087 3E-08 44.9 3.8 22 4-25 7-28 (194)
382 3umf_A Adenylate kinase; rossm 96.9 0.00068 2.3E-08 46.8 3.3 20 6-25 32-51 (217)
383 3b9q_A Chloroplast SRP recepto 96.9 0.00064 2.2E-08 49.4 3.3 21 5-25 102-122 (302)
384 1gtv_A TMK, thymidylate kinase 96.9 0.00023 7.8E-09 48.8 0.9 22 5-26 2-23 (214)
385 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00049 1.7E-08 50.6 2.6 23 5-27 173-195 (330)
386 1p9r_A General secretion pathw 96.9 0.00064 2.2E-08 51.6 3.2 23 5-27 169-191 (418)
387 2h92_A Cytidylate kinase; ross 96.9 0.00065 2.2E-08 46.7 3.0 25 1-25 1-25 (219)
388 1iy2_A ATP-dependent metallopr 96.9 0.00071 2.4E-08 48.4 3.3 22 6-27 76-97 (278)
389 1in4_A RUVB, holliday junction 96.9 0.00068 2.3E-08 49.9 3.3 23 5-27 53-75 (334)
390 3ake_A Cytidylate kinase; CMP 96.8 0.00093 3.2E-08 45.4 3.7 24 1-25 1-24 (208)
391 3d31_A Sulfate/molybdate ABC t 96.8 0.00046 1.6E-08 51.1 2.0 22 6-27 29-50 (348)
392 1zuh_A Shikimate kinase; alpha 96.8 0.0009 3.1E-08 44.0 3.3 21 5-25 9-29 (168)
393 3gd7_A Fusion complex of cysti 96.8 0.00075 2.5E-08 50.7 3.1 23 5-27 49-71 (390)
394 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00088 3E-08 46.3 3.3 21 6-26 26-46 (235)
395 1ltq_A Polynucleotide kinase; 96.8 0.0012 4E-08 47.7 4.0 24 1-25 1-24 (301)
396 4eaq_A DTMP kinase, thymidylat 96.8 0.0013 4.3E-08 45.8 4.0 24 3-26 26-49 (229)
397 2oap_1 GSPE-2, type II secreti 96.8 0.00074 2.5E-08 52.6 3.0 23 5-27 262-284 (511)
398 2vp4_A Deoxynucleoside kinase; 96.8 0.00054 1.9E-08 47.6 2.1 23 4-26 21-43 (230)
399 1uj2_A Uridine-cytidine kinase 96.8 0.001 3.5E-08 46.9 3.6 23 3-25 22-44 (252)
400 1lv7_A FTSH; alpha/beta domain 96.8 0.00095 3.3E-08 47.1 3.3 22 5-26 47-68 (257)
401 3kta_A Chromosome segregation 96.8 0.00098 3.3E-08 44.4 3.2 20 6-25 29-48 (182)
402 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.6E-08 47.7 3.4 22 3-24 75-96 (281)
403 1nij_A Hypothetical protein YJ 96.7 0.00071 2.4E-08 49.5 2.5 22 6-27 7-28 (318)
404 2w58_A DNAI, primosome compone 96.7 0.0011 3.8E-08 44.9 3.3 24 4-27 55-78 (202)
405 3nwj_A ATSK2; P loop, shikimat 96.7 0.001 3.5E-08 46.9 3.0 22 4-25 49-70 (250)
406 1m7g_A Adenylylsulfate kinase; 96.7 0.0015 5.1E-08 44.7 3.8 22 4-25 26-47 (211)
407 1oxx_K GLCV, glucose, ABC tran 96.7 0.00046 1.6E-08 51.2 1.3 23 6-28 34-56 (353)
408 2p65_A Hypothetical protein PF 96.7 0.00092 3.1E-08 44.4 2.7 22 5-26 45-66 (187)
409 3bos_A Putative DNA replicatio 96.7 0.0011 3.9E-08 45.9 3.3 23 4-26 53-75 (242)
410 2og2_A Putative signal recogni 96.7 0.0011 3.8E-08 49.3 3.3 21 5-25 159-179 (359)
411 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00092 3.1E-08 51.4 2.9 23 5-27 140-162 (460)
412 1cr0_A DNA primase/helicase; R 96.7 0.0011 3.7E-08 47.9 3.1 22 6-27 38-59 (296)
413 2grj_A Dephospho-COA kinase; T 96.7 0.0014 4.9E-08 44.3 3.5 24 3-26 12-35 (192)
414 2yhs_A FTSY, cell division pro 96.6 0.0012 4.1E-08 51.0 3.3 84 52-145 377-472 (503)
415 4edh_A DTMP kinase, thymidylat 96.6 0.0019 6.3E-08 44.5 3.8 25 1-25 4-28 (213)
416 2cvh_A DNA repair and recombin 96.6 0.0014 4.9E-08 44.8 3.3 21 5-25 22-42 (220)
417 4b4t_L 26S protease subunit RP 96.6 0.0068 2.3E-07 46.2 7.2 23 4-26 216-238 (437)
418 1svm_A Large T antigen; AAA+ f 96.6 0.0014 4.7E-08 49.1 3.3 21 5-25 171-191 (377)
419 1n0w_A DNA repair protein RAD5 96.6 0.0015 5.1E-08 45.5 3.3 22 5-26 26-47 (243)
420 2obl_A ESCN; ATPase, hydrolase 96.6 0.0015 5.2E-08 48.4 3.4 23 5-27 73-95 (347)
421 3exa_A TRNA delta(2)-isopenten 96.6 0.002 6.9E-08 46.8 4.0 26 1-26 1-26 (322)
422 3n70_A Transport activator; si 96.6 0.0017 5.8E-08 41.7 3.3 24 4-27 25-48 (145)
423 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0074 2.5E-07 45.0 7.0 19 6-24 26-44 (365)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0017 6E-08 41.9 3.2 19 6-24 26-44 (149)
425 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0041 1.4E-07 47.5 5.6 20 5-24 69-88 (457)
426 3b9p_A CG5977-PA, isoform A; A 96.5 0.0016 5.6E-08 46.9 3.2 23 4-26 55-77 (297)
427 1q3t_A Cytidylate kinase; nucl 96.5 0.0021 7.3E-08 44.7 3.7 24 2-25 15-38 (236)
428 1tue_A Replication protein E1; 96.5 0.0013 4.6E-08 44.7 2.5 21 5-25 60-80 (212)
429 3h4m_A Proteasome-activating n 96.5 0.0017 5.9E-08 46.4 3.2 22 5-26 53-74 (285)
430 3euj_A Chromosome partition pr 96.5 0.0017 5.9E-08 50.1 3.3 21 5-25 31-51 (483)
431 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0019 6.3E-08 45.6 3.3 22 5-26 41-62 (262)
432 2chg_A Replication factor C sm 96.5 0.0019 6.7E-08 44.0 3.3 21 6-26 41-61 (226)
433 1njg_A DNA polymerase III subu 96.5 0.0019 6.5E-08 44.6 3.2 21 5-25 47-67 (250)
434 3cf0_A Transitional endoplasmi 96.4 0.0019 6.5E-08 46.8 3.2 22 5-26 51-72 (301)
435 3t15_A Ribulose bisphosphate c 96.4 0.0019 6.4E-08 46.7 3.2 23 4-26 37-59 (293)
436 1yqt_A RNAse L inhibitor; ATP- 96.4 0.0028 9.6E-08 49.8 4.2 23 5-27 49-71 (538)
437 2qmh_A HPR kinase/phosphorylas 96.4 0.0022 7.4E-08 43.5 3.0 25 3-27 34-58 (205)
438 3crm_A TRNA delta(2)-isopenten 96.4 0.0023 8E-08 46.7 3.4 22 5-26 7-28 (323)
439 2dpy_A FLII, flagellum-specifi 96.4 0.0022 7.5E-08 49.0 3.4 23 5-27 159-181 (438)
440 1l8q_A Chromosomal replication 96.4 0.0022 7.4E-08 46.9 3.2 22 5-26 39-60 (324)
441 3gmt_A Adenylate kinase; ssgci 96.4 0.0027 9.2E-08 44.1 3.4 22 4-25 9-30 (230)
442 3b60_A Lipid A export ATP-bind 96.4 0.0019 6.6E-08 51.2 3.0 23 5-27 371-393 (582)
443 3lv8_A DTMP kinase, thymidylat 96.4 0.0027 9.1E-08 44.4 3.4 25 1-25 25-49 (236)
444 3b5x_A Lipid A export ATP-bind 96.3 0.0023 7.7E-08 50.8 3.2 23 5-27 371-393 (582)
445 2ocp_A DGK, deoxyguanosine kin 96.3 0.0033 1.1E-07 43.9 3.7 24 3-26 2-25 (241)
446 3j16_B RLI1P; ribosome recycli 96.3 0.0031 1.1E-07 50.2 4.0 23 5-27 105-127 (608)
447 1nlf_A Regulatory protein REPA 96.3 0.0025 8.4E-08 45.6 3.1 21 5-25 32-52 (279)
448 2px0_A Flagellar biosynthesis 96.3 0.0025 8.5E-08 46.1 3.1 85 51-145 183-273 (296)
449 4b4t_I 26S protease regulatory 96.3 0.011 3.7E-07 44.9 6.6 22 5-26 218-239 (437)
450 3zvl_A Bifunctional polynucleo 96.3 0.0023 7.9E-08 48.6 3.0 23 4-26 259-281 (416)
451 4tmk_A Protein (thymidylate ki 96.3 0.0032 1.1E-07 43.3 3.4 25 1-25 1-25 (213)
452 3ozx_A RNAse L inhibitor; ATP 96.3 0.003 1E-07 49.6 3.6 23 5-27 27-49 (538)
453 4b4t_K 26S protease regulatory 96.3 0.0028 9.4E-08 48.2 3.3 22 5-26 208-229 (428)
454 3syl_A Protein CBBX; photosynt 96.3 0.0031 1.1E-07 45.6 3.4 21 5-25 69-89 (309)
455 3v9p_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 44.2 2.8 24 2-25 24-47 (227)
456 1vma_A Cell division protein F 96.2 0.003 1E-07 45.9 3.3 86 51-146 187-284 (306)
457 3d3q_A TRNA delta(2)-isopenten 96.2 0.0041 1.4E-07 45.8 4.0 22 4-25 8-29 (340)
458 1d2n_A N-ethylmaleimide-sensit 96.2 0.0042 1.4E-07 44.2 4.0 24 3-26 64-87 (272)
459 4b4t_M 26S protease regulatory 96.2 0.003 1E-07 48.1 3.3 23 4-26 216-238 (434)
460 2qby_A CDC6 homolog 1, cell di 96.2 0.0028 9.7E-08 47.1 3.2 22 5-26 47-68 (386)
461 1ofh_A ATP-dependent HSL prote 96.2 0.0031 1.1E-07 45.5 3.3 23 4-26 51-73 (310)
462 1sxj_E Activator 1 40 kDa subu 96.2 0.0024 8.4E-08 47.1 2.7 21 6-26 39-59 (354)
463 2yl4_A ATP-binding cassette SU 96.2 0.002 7E-08 51.2 2.4 23 5-27 372-394 (595)
464 3uc9_A Increased recombination 96.2 0.0052 1.8E-07 42.5 4.1 23 5-27 29-53 (233)
465 1xwi_A SKD1 protein; VPS4B, AA 96.2 0.0031 1.1E-07 46.2 3.2 22 5-26 47-68 (322)
466 1sxj_C Activator 1 40 kDa subu 96.2 0.0032 1.1E-07 46.4 3.2 22 6-27 49-70 (340)
467 3qf4_B Uncharacterized ABC tra 96.2 0.0022 7.6E-08 51.0 2.5 23 5-27 383-405 (598)
468 4fcw_A Chaperone protein CLPB; 96.2 0.0034 1.2E-07 45.4 3.3 22 5-26 49-70 (311)
469 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0034 1.2E-07 49.3 3.5 23 5-27 314-336 (538)
470 1p5z_B DCK, deoxycytidine kina 96.2 0.0022 7.4E-08 45.5 2.1 24 3-26 24-47 (263)
471 3bk7_A ABC transporter ATP-bin 96.2 0.0041 1.4E-07 49.6 3.9 23 5-27 119-141 (607)
472 3ozx_A RNAse L inhibitor; ATP 96.1 0.0029 9.8E-08 49.7 2.9 23 5-27 296-318 (538)
473 1fnn_A CDC6P, cell division co 96.1 0.0035 1.2E-07 46.7 3.3 23 5-27 46-68 (389)
474 3bk7_A ABC transporter ATP-bin 96.1 0.0033 1.1E-07 50.1 3.2 23 5-27 384-406 (607)
475 3co5_A Putative two-component 96.1 0.0015 5.3E-08 41.8 1.1 22 4-25 28-49 (143)
476 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0046 1.6E-07 45.7 3.7 22 4-25 25-46 (359)
477 3eie_A Vacuolar protein sortin 96.1 0.0036 1.2E-07 45.8 3.2 23 4-26 52-74 (322)
478 4b4t_J 26S protease regulatory 96.1 0.0037 1.3E-07 47.1 3.3 22 5-26 184-205 (405)
479 3tqf_A HPR(Ser) kinase; transf 96.1 0.0044 1.5E-07 41.0 3.2 24 4-27 17-40 (181)
480 2dr3_A UPF0273 protein PH0284; 96.1 0.0038 1.3E-07 43.5 3.1 20 6-25 26-45 (247)
481 2qgz_A Helicase loader, putati 96.1 0.0045 1.6E-07 45.0 3.5 22 4-25 153-174 (308)
482 4a82_A Cystic fibrosis transme 96.0 0.0019 6.6E-08 51.1 1.5 23 5-27 369-391 (578)
483 3a8t_A Adenylate isopentenyltr 96.0 0.0046 1.6E-07 45.5 3.3 22 5-26 42-63 (339)
484 1sxj_D Activator 1 41 kDa subu 96.0 0.0043 1.5E-07 45.7 3.3 21 6-26 61-81 (353)
485 1pzn_A RAD51, DNA repair and r 96.0 0.0041 1.4E-07 46.1 3.1 23 5-27 133-155 (349)
486 3qks_A DNA double-strand break 96.0 0.0047 1.6E-07 42.0 3.2 19 6-24 26-44 (203)
487 2r62_A Cell division protease 96.0 0.0018 6.2E-08 45.9 1.2 22 5-26 46-67 (268)
488 3j16_B RLI1P; ribosome recycli 96.0 0.0041 1.4E-07 49.5 3.2 23 6-28 381-403 (608)
489 3qf4_A ABC transporter, ATP-bi 96.0 0.0025 8.6E-08 50.6 2.0 23 5-27 371-393 (587)
490 3uk6_A RUVB-like 2; hexameric 96.0 0.0043 1.5E-07 46.1 3.1 22 5-26 72-93 (368)
491 2v1u_A Cell division control p 96.0 0.004 1.4E-07 46.3 2.9 22 5-26 46-67 (387)
492 2qp9_X Vacuolar protein sortin 95.9 0.0049 1.7E-07 45.8 3.2 22 5-26 86-107 (355)
493 1a7j_A Phosphoribulokinase; tr 95.9 0.0024 8.4E-08 46.0 1.6 23 3-25 5-27 (290)
494 3cr8_A Sulfate adenylyltranfer 95.9 0.0036 1.2E-07 49.3 2.5 24 4-27 370-393 (552)
495 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0049 1.7E-07 47.9 3.2 23 5-27 66-88 (499)
496 3pfi_A Holliday junction ATP-d 95.9 0.0052 1.8E-07 45.1 3.3 22 5-26 57-78 (338)
497 3m6a_A ATP-dependent protease 95.9 0.0049 1.7E-07 48.5 3.2 22 5-26 110-131 (543)
498 2bjv_A PSP operon transcriptio 95.9 0.0059 2E-07 43.2 3.4 24 4-27 30-53 (265)
499 2z4s_A Chromosomal replication 95.9 0.005 1.7E-07 47.1 3.2 22 5-26 132-153 (440)
500 3ld9_A DTMP kinase, thymidylat 95.9 0.0081 2.8E-07 41.5 4.0 23 3-25 21-43 (223)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.1e-42 Score=240.34 Aligned_cols=165 Identities=27% Similarity=0.522 Sum_probs=141.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
|+++||+|+|.+|||||||++++..+.+...+.+|.+ +........++..+.+++|||+|++++..++..+++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 5789999999999999999999999999988888887 555666778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||++++++++.+..|+..+.... .++.|+++|+||+|+.. +.++.+++++++++++++|+++||++|.||+++|+.
T Consensus 91 lv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 91 VVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 9999999999999999999987653 45789999999999976 678999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy11135 159 LVREIKKD 166 (191)
Q Consensus 159 i~~~~~~~ 166 (191)
|++.+...
T Consensus 170 i~~~i~~~ 177 (216)
T 4dkx_A 170 VAAALPGM 177 (216)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 99988653
No 2
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.8e-38 Score=217.50 Aligned_cols=187 Identities=78% Similarity=1.121 Sum_probs=156.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+++|++|||||||++++.+..+...+.+++.+........++..+.+.+|||||++++...+..++..+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999999888888888877777788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.......+++..+++.++++++++||++|.|++++|++|.+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 162 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 162 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998877677899999999999988888999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhccccCCCccccceecC
Q psy11135 162 EIKKDKMLRGKEKKKRGISGNKLKQCCVLL 191 (191)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
.+.+.+..... ......++.+.||+|+
T Consensus 163 ~~~~~~~~~~~---~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 163 EIRKHKEKMSK---DGKKKKKKSKTKCVIM 189 (189)
T ss_dssp HHHHHHHHHHH---CSSTTCCC--------
T ss_pred HHHHhhhhccc---ccccccccccceeeeC
Confidence 99876544332 3333445566677764
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=219.93 Aligned_cols=190 Identities=52% Similarity=0.908 Sum_probs=153.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++.++|+|+|.+|||||||++++.+..+...+.+++...+.....+++..+.+.+|||||++++...+..++..+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 46799999999999999999999999988888888887777777888888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 171 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 171 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999988876666899999999999976 5678888999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhh----hhccccCCCccccceec
Q psy11135 160 VREIKKDKMLRGKE----KKKRGISGNKLKQCCVL 190 (191)
Q Consensus 160 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 190 (191)
.+.+.+.+....++ .+.+....+..++||.+
T Consensus 172 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Cc~~ 206 (206)
T 2bov_A 172 MREIRARKMEDSKEKNGKKKRKSLAKRIRERCCIL 206 (206)
T ss_dssp HHHHHHHHHHHC-----------------------
T ss_pred HHHHHHccccccccccCcccccchhhccccceecC
Confidence 99998754443322 22233334445678864
No 4
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-37 Score=214.48 Aligned_cols=168 Identities=39% Similarity=0.695 Sum_probs=147.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
..++|+++|.+|||||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..++..+|++++|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence 36899999999999999999999988777777777766666667788888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++.++..+..|+..+..... ..+.|+++|+||+|+....+..+++..++..++++++++||++|.|++++|++|.
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (199)
T 2gf0_A 87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELL 166 (199)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Confidence 999999999999888877765432 2468999999999998877888899999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
+.+.+.+..
T Consensus 167 ~~~~~~~~~ 175 (199)
T 2gf0_A 167 TLETRRNMS 175 (199)
T ss_dssp HHCSSSCEE
T ss_pred HHHhhhhcc
Confidence 988765543
No 5
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.3e-35 Score=199.48 Aligned_cols=165 Identities=54% Similarity=0.932 Sum_probs=147.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+.+||+++|.+|+|||||++++.+..+...+.++..........+++..+.+.+||+||++++...+..++..+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 78999999999999999999999999887777788777776777788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999999999999988876666899999999999975 5677888999999999999999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
No 6
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.9e-35 Score=205.34 Aligned_cols=166 Identities=36% Similarity=0.623 Sum_probs=145.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+|+|++|+|||||++++.+..+...+.++.+. .....+.+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv 87 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 87 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEE
Confidence 589999999999999999999999877776666653 3344566788888899999999999998899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++.++..+..|+..+.... ....|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 166 (206)
T 2bcg_Y 88 YDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166 (206)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 45789999999999976 56778889999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
+.+.+....
T Consensus 167 ~~i~~~~~~ 175 (206)
T 2bcg_Y 167 RQIKESMSQ 175 (206)
T ss_dssp HHHHHHCCH
T ss_pred HHHHHHHhh
Confidence 999775443
No 7
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=9.5e-36 Score=199.92 Aligned_cols=165 Identities=49% Similarity=0.884 Sum_probs=149.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|++|+|||||++++.+..+...+.++..........+++..+.+.+||+||++++...+..++..++++++
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 78999999999999999999999999887777777777667777888888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..++...+++.++++++++||++|.|+++++++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 999999999999999999888766667899999999999865 5677888899999999999999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988753
No 8
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=6.5e-36 Score=200.90 Aligned_cols=164 Identities=57% Similarity=0.986 Sum_probs=147.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+||+||++++...+..++..+|++++
T Consensus 1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 78999999999999999999999998887778788777666667778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~ 158 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.+ +++++++||++|.|+++++++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999998887766667899999999999976 556788889999988 789999999999999999999
Q ss_pred HHHHHH
Q psy11135 159 LVREIK 164 (191)
Q Consensus 159 i~~~~~ 164 (191)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988764
No 9
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.1e-35 Score=201.41 Aligned_cols=165 Identities=58% Similarity=0.926 Sum_probs=151.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++.+||+++|.+|+|||||++++.+..+...+.++....+......++..+.+.+||+||++++...+..+++.+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 95 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 35799999999999999999999999888888888887777778889999899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccC-CCCCHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYT 158 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~v~~l~~~ 158 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+ ++.|++++|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~ 175 (183)
T 3kkq_A 96 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD 175 (183)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHH
Confidence 999999999999999999987766667899999999999976 6788899999999999999999999 99999999999
Q ss_pred HHHHHHh
Q psy11135 159 LVREIKK 165 (191)
Q Consensus 159 i~~~~~~ 165 (191)
|.+.+.+
T Consensus 176 l~~~i~~ 182 (183)
T 3kkq_A 176 LVRVIRQ 182 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988765
No 10
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4.4e-35 Score=200.98 Aligned_cols=168 Identities=83% Similarity=1.223 Sum_probs=141.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|.+|||||||++++.+..+...+.++....+......++..+.+.+||+||++++...+..++..+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 67899999999999999999999998887777777777777777788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|||+++.+++..+..|+..+.......+.|+++|+||+|+....+..+++.++++.++++++++|++++.|+++++++|.
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999888776665679999999999998777788999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q psy11135 161 REIKKDKM 168 (191)
Q Consensus 161 ~~~~~~~~ 168 (191)
+.+.+.+.
T Consensus 179 ~~~~~~~~ 186 (190)
T 3con_A 179 REIRQYRM 186 (190)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99876544
No 11
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4.6e-35 Score=196.28 Aligned_cols=165 Identities=81% Similarity=1.194 Sum_probs=149.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|++|+|||||++++.+..+...+.++...........++..+.+.+||+||++++...+..++..+|++++
T Consensus 1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 78999999999999999999999999887777777777666777788888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
+||+++++++..+..|+..+.......+.|+++|+||+|+.......++..++++.++++++++|++++.|+++++++|.
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999988876655679999999999998877788899999999999999999999999999999999
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88754
No 12
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=209.27 Aligned_cols=168 Identities=33% Similarity=0.565 Sum_probs=143.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV 102 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence 57999999999999999999999999888888888776666666777788899999999999988899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|.
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 182 (201)
T 3oes_A 103 YSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182 (201)
T ss_dssp EETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999988766666899999999999875 66788899999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
+.+.+....
T Consensus 183 ~~i~~~~~~ 191 (201)
T 3oes_A 183 QEIARVENS 191 (201)
T ss_dssp HHHHHC---
T ss_pred HHHHhhhhh
Confidence 998765433
No 13
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=197.84 Aligned_cols=167 Identities=31% Similarity=0.528 Sum_probs=133.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--HHHHHHhhcccCCEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--YSAMRDQYMRTGEGF 78 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~~ 78 (191)
++.+||+++|++|||||||++++.+..+...+.++..+.......+++..+.+.+|||||++. +......+++.++++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468999999999999999999999888655544443455556667888888899999999987 567778889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
++|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..++..++++++++||++|.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999999998887754456789999999999976 56778888899999999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy11135 158 TLVREIKKDK 167 (191)
Q Consensus 158 ~i~~~~~~~~ 167 (191)
+|.+.+.+.+
T Consensus 162 ~l~~~~~~~~ 171 (175)
T 2nzj_A 162 GVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999886543
No 14
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=4.2e-35 Score=200.32 Aligned_cols=168 Identities=55% Similarity=0.932 Sum_probs=151.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+.+||+++|.+|+|||||++++.+..+...+.+++...+.....+++..+.+.+||+||++++...+..++..+|++++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 56799999999999999999999999888888888877777777888888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++|++++.|++++|++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 999999999999999999988876666899999999999976 4677888999999999999999999999999999999
Q ss_pred HHHHHhhhh
Q psy11135 160 VREIKKDKM 168 (191)
Q Consensus 160 ~~~~~~~~~ 168 (191)
.+.+.+.+.
T Consensus 176 ~~~i~~~~~ 184 (187)
T 2a9k_A 176 MREIRARKM 184 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999876543
No 15
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.3e-35 Score=200.64 Aligned_cols=166 Identities=56% Similarity=0.875 Sum_probs=150.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.+++...+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV 87 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence 57999999999999999999999998888888888877777777888888899999999999988899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..++...+++++++||++|.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 88 FAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999998886655566899999999999976 56778889999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy11135 161 REIKKDK 167 (191)
Q Consensus 161 ~~~~~~~ 167 (191)
+.+.+.+
T Consensus 168 ~~~~~~~ 174 (181)
T 2fn4_A 168 RAVRKYQ 174 (181)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9987644
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.1e-35 Score=202.48 Aligned_cols=167 Identities=37% Similarity=0.623 Sum_probs=148.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|+|||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 46899999999999999999999988888888888877777778899888999999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|.
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 164 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999988776667899999999999965 66788999999999999999999999999999999999
Q ss_pred HHHHhhhh
Q psy11135 161 REIKKDKM 168 (191)
Q Consensus 161 ~~~~~~~~ 168 (191)
+.+.+.+.
T Consensus 165 ~~~~~~~~ 172 (181)
T 3t5g_A 165 LEAEKMDG 172 (181)
T ss_dssp HHHHTC--
T ss_pred HHHHHhcC
Confidence 99877543
No 17
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-35 Score=201.62 Aligned_cols=172 Identities=33% Similarity=0.506 Sum_probs=149.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|++|||||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 5799999999999999999999999877666666653 334556678888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|||++++.++..+..|+..+..+....+.|+++|+||+|+....+..+++..+++..+++++++||+++.|++++|++|.
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV 173 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999888776555679999999999997777888899999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhh
Q psy11135 161 REIKKDKMLRGKE 173 (191)
Q Consensus 161 ~~~~~~~~~~~~~ 173 (191)
+.+.+.......+
T Consensus 174 ~~~~~~~~~~~~~ 186 (195)
T 1x3s_A 174 EKIIQTPGLWESE 186 (195)
T ss_dssp HHHHTSGGGTCC-
T ss_pred HHHHhhhhhhccc
Confidence 9998765544333
No 18
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.7e-34 Score=197.21 Aligned_cols=161 Identities=27% Similarity=0.465 Sum_probs=141.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|.+|||||||++++.+..+...+.++ ...+.....+++..+.+.+|||+|++.+. +++.+|++++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 57899999999999999999999999987777666 44445677889999999999999998876 6778999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC---CCccCHHHHHHHHHHcC-CCEEEeccCCCCCHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS---TWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~l~ 156 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+. ...+..+++..++..++ ++++++||++|.|++++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF 171 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence 99999999999999999998776444678999999999984 36688899999999997 899999999999999999
Q ss_pred HHHHHHHHhhh
Q psy11135 157 YTLVREIKKDK 167 (191)
Q Consensus 157 ~~i~~~~~~~~ 167 (191)
++|.+.+.+.+
T Consensus 172 ~~l~~~i~~~~ 182 (184)
T 3ihw_A 172 QDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 19
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=9.9e-35 Score=195.05 Aligned_cols=164 Identities=32% Similarity=0.508 Sum_probs=123.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|||||||++++.+...... .++.+..+.....+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 368999999999999999999987664322 3344445556677889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.......+.|+++|+||+|+.+ ..+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999999988765567899999999999976 66788889999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988764
No 20
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-34 Score=199.45 Aligned_cols=165 Identities=40% Similarity=0.709 Sum_probs=148.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+||+||+++ ...+..++..+|++++|
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv 105 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLV 105 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEE
Confidence 47999999999999999999999999887888888777766677888889999999999988 77788889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC-CHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~v~~l~~~i 159 (191)
||++++++++.+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++. |++++|++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l 185 (196)
T 2atv_A 106 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHH
Confidence 99999999999999998888766667899999999999976 5678889999999999999999999999 999999999
Q ss_pred HHHHHhhh
Q psy11135 160 VREIKKDK 167 (191)
Q Consensus 160 ~~~~~~~~ 167 (191)
.+.+.+.+
T Consensus 186 ~~~i~~~~ 193 (196)
T 2atv_A 186 CREVRRRR 193 (196)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99887644
No 21
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=3.2e-34 Score=194.71 Aligned_cols=162 Identities=22% Similarity=0.422 Sum_probs=138.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+++||+++|++|||||||++++.+..+.. +.++..+.+.....+++..+.+.+|||||+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 468999999999999999999999988765 66777777677777888889999999999887 456788999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCC---CCccCHHHHHHHHHHc-CCCEEEeccCCCCCHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLS---TWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~---~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~ 154 (191)
|||+++++++..+..|+..+..... .++.|+++|+||+|+. ...+..+++.++++.. +++++++||++|.|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 9999999999999998766654332 3578999999999984 3567888899998886 68999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy11135 155 AFYTLVREIKKDKM 168 (191)
Q Consensus 155 l~~~i~~~~~~~~~ 168 (191)
+|++|.+.+.+.+.
T Consensus 159 lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 159 VFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876543
No 22
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.1e-34 Score=200.08 Aligned_cols=169 Identities=33% Similarity=0.554 Sum_probs=144.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.++|+++|++|+|||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL 86 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence 478999999999999999999999987777666665 3444555667778889999999999998888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcCCCEEEeccCCCCCHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~l~ 156 (191)
|||++++.++..+..|+..+..... ..+.|+++|+||+|+....+..+++..++. ..+++++++||++|.|++++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence 9999999999999999888766442 146899999999999877778888888887 677899999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy11135 157 YTLVREIKKDKMLR 170 (191)
Q Consensus 157 ~~i~~~~~~~~~~~ 170 (191)
++|.+.+.+.+...
T Consensus 167 ~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 167 QTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc
Confidence 99999998766543
No 23
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.3e-35 Score=204.38 Aligned_cols=166 Identities=34% Similarity=0.532 Sum_probs=143.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 87 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLA 87 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEE
Confidence 57999999999999999999999998888888888877776777888888999999999999998999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCc---------cCHHHHHHHHHHcCC-CEEEeccCCCC
Q psy11135 82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWA---------VDMNQAQELAEQFNI-PFIKTSAKTRM 150 (191)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------~~~~~~~~~~~~~~~-~~~~~s~~~~~ 150 (191)
||+++++++..+. .|+..+.... ++.|+++|+||+|+.... +..+++.++++.+++ +++++||++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 88 FSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 9999999999987 7888877653 478999999999986532 367888899999996 99999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy11135 151 GVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~~~ 169 (191)
|++++|++|.+.+.+....
T Consensus 166 gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp THHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHhhhhhh
Confidence 9999999999999765443
No 24
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=6.5e-35 Score=203.80 Aligned_cols=166 Identities=23% Similarity=0.362 Sum_probs=145.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||+|++++...+..+++.+|++++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 45799999999999999999999999988888888887777777788888899999999999999999999999999999
Q ss_pred EEeCCChhhHHH-HHHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEec
Q psy11135 81 VFAVNSMKSFED-IGSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTS 145 (191)
Q Consensus 81 v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s 145 (191)
|||+++++++.. +..|+..+.... ++.|+++|+||+|+.. +.+..+++..+++.+++ +++++|
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 999999999998 688888887753 5789999999999965 46888999999999999 999999
Q ss_pred cCCCCC-HHHHHHHHHHHHHhhhh
Q psy11135 146 AKTRMG-VDDAFYTLVREIKKDKM 168 (191)
Q Consensus 146 ~~~~~~-v~~l~~~i~~~~~~~~~ 168 (191)
|++|.| ++++|++|.+.+.....
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC---
T ss_pred cCCCcccHHHHHHHHHHHHhccCc
Confidence 999998 99999999998876544
No 25
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6.3e-34 Score=197.87 Aligned_cols=164 Identities=31% Similarity=0.576 Sum_probs=137.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-HHHHHHhhcccCCEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-YSAMRDQYMRTGEGF 78 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~ 78 (191)
..+||+++|.+|||||||++++.+.. +...+.++..+.+.....+++..+.+.+|||+|++. +..+...+++.++++
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 36899999999999999999999644 345554444455566677889888899999999887 556777788899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.. +.+..+++..++..++++++++||++|.|++++|+
T Consensus 116 ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999988776543345789999999999975 56788888889999999999999999999999999
Q ss_pred HHHHHHHh
Q psy11135 158 TLVREIKK 165 (191)
Q Consensus 158 ~i~~~~~~ 165 (191)
+|.+.+..
T Consensus 196 ~l~~~i~~ 203 (211)
T 2g3y_A 196 GIVRQVRL 203 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998854
No 26
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=198.83 Aligned_cols=163 Identities=32% Similarity=0.561 Sum_probs=141.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++... ..+++.+|++++|
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv 98 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVV 98 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEE
Confidence 579999999999999999999999998888888888776666778888999999999999887665 5678999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEecc-CCCCCHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSA-KTRMGVDDAFY 157 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~v~~l~~ 157 (191)
||+++++++..+..|+..+..... ..+.|+++|+||+|+.. ..+..+++.++++.++++++++|| +++.|++++|+
T Consensus 99 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 99 YSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHH
Confidence 999999999999999988876532 25789999999999975 567889999999999999999999 89999999999
Q ss_pred HHHHHHHh
Q psy11135 158 TLVREIKK 165 (191)
Q Consensus 158 ~i~~~~~~ 165 (191)
.|.+.+.+
T Consensus 179 ~l~~~i~~ 186 (187)
T 3c5c_A 179 EAVREARR 186 (187)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988753
No 27
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.1e-34 Score=196.82 Aligned_cols=164 Identities=31% Similarity=0.511 Sum_probs=147.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 101 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC 101 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence 46999999999999999999999999888888888877777788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC---CccCHHHHHHHHHHcCCC-EEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST---WAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+ ..|+..+... ..+.|+++|+||+|+.. ..+..+++..+++.++++ ++++||++|.|++++|
T Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 102 FAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence 999999999997 6677777654 35789999999999975 567889999999999998 9999999999999999
Q ss_pred HHHHHHHHhhh
Q psy11135 157 YTLVREIKKDK 167 (191)
Q Consensus 157 ~~i~~~~~~~~ 167 (191)
++|.+.+.+.+
T Consensus 180 ~~l~~~i~~~~ 190 (194)
T 3reg_A 180 EKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHCSC
T ss_pred HHHHHHHHhcC
Confidence 99999887654
No 28
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.9e-34 Score=196.95 Aligned_cols=165 Identities=32% Similarity=0.505 Sum_probs=145.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|+.+||+++|.+|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 67899999999999999999999998888788888877777777888999999999999999999888999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEec
Q psy11135 81 VFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTS 145 (191)
Q Consensus 81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s 145 (191)
|||++++.++..+. .|+..+.... ++.|+++|+||+|+.. ..+..+++..+++.+++ +++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999987 6777776643 3789999999999865 35677888889999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy11135 146 AKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
|++|.|++++|++|.+.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCC
T ss_pred CCCccCHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 29
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=194.83 Aligned_cols=167 Identities=38% Similarity=0.656 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|+|||||++++.+..+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 95 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 95 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEE
Confidence 58999999999999999999999887776666665 44455667788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|++|.
T Consensus 96 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 96 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887753 45789999999999976 56777889999999999999999999999999999999
Q ss_pred HHHHhhhhhh
Q psy11135 161 REIKKDKMLR 170 (191)
Q Consensus 161 ~~~~~~~~~~ 170 (191)
+.+.+.....
T Consensus 175 ~~i~~~~~~~ 184 (196)
T 3tkl_A 175 AEIKKRMGPG 184 (196)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHhccc
Confidence 9998765543
No 30
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=8.5e-34 Score=194.50 Aligned_cols=165 Identities=35% Similarity=0.584 Sum_probs=141.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHH-HHHHhhcccCCEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYS-AMRDQYMRTGEGF 78 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~ 78 (191)
++.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 3579999999999999999999999887766666655 3445556678888889999999999988 7888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCC---CCHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTR---MGVDD 154 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~v~~ 154 (191)
++|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..++++.+++..+++++++||+++ .|+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~ 177 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA 177 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence 99999999999999999999988876567899999999999976 467888899999999999999999999 99999
Q ss_pred HHHHHHHHHHh
Q psy11135 155 AFYTLVREIKK 165 (191)
Q Consensus 155 l~~~i~~~~~~ 165 (191)
+|++|.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (189)
T 1z06_A 178 IFMTLAHKLKS 188 (189)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHhh
Confidence 99999887653
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-34 Score=192.72 Aligned_cols=162 Identities=31% Similarity=0.540 Sum_probs=142.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
|+.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+||+||++++...+..+++.+|+++
T Consensus 1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 688999999999999999999999998776666666533 3455667888888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC----CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST----WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l 155 (191)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..++...+++..+++++++||+++.|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999998887653 45789999999999865 457788889999999999999999999999999
Q ss_pred HHHHHHHH
Q psy11135 156 FYTLVREI 163 (191)
Q Consensus 156 ~~~i~~~~ 163 (191)
|++|.+.+
T Consensus 160 ~~~l~~~i 167 (170)
T 1ek0_A 160 FLGIGEKI 167 (170)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHHH
Confidence 99998765
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.1e-33 Score=192.98 Aligned_cols=166 Identities=30% Similarity=0.492 Sum_probs=143.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE--EEEEEcCe---------EEEEEEEeCCChhhHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR--KQVVIDGE---------TALLDILDTAGQEEYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~D~~g~~~~~~~~~~~ 71 (191)
.+||+++|++|+|||||++++.+..+...+.++.+..+. .....++. .+.+.+|||||++++...+..+
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 90 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAF 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHH
Confidence 589999999999999999999998876666666654433 34445554 6789999999999999999999
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
++.+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..++..++++++++||+++.
T Consensus 91 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 170 (195)
T 3bc1_A 91 FRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGT 170 (195)
T ss_dssp TTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCT
T ss_pred HcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCC
Confidence 999999999999999999999999999888765556899999999999976 5677888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy11135 151 GVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~~ 168 (191)
|++++|++|.+.+.+...
T Consensus 171 ~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 171 NISHAIEMLLDLIMKRME 188 (195)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999876433
No 33
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=195.36 Aligned_cols=163 Identities=32% Similarity=0.522 Sum_probs=143.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 105 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 105 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999887766666655 34445566788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..++...+++++++||++|.|++++|++|.
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 106 YDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887643 45789999999999975 56778888999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 185 ~~i~~~ 190 (201)
T 2ew1_A 185 CRLISE 190 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 34
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=6.2e-34 Score=191.68 Aligned_cols=164 Identities=28% Similarity=0.470 Sum_probs=132.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-HHHhhcccCCEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD-PTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFLL 80 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~ 80 (191)
.+||+++|++|||||||++++.+........ +++.+.......+++..+.+.+||+||++++.. .+..++..+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998766433332 333455566677889899999999999998876 67777889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 999999999999999999988766556899999999999975 6788899999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy11135 160 VREIKKD 166 (191)
Q Consensus 160 ~~~~~~~ 166 (191)
.+.+...
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988764
No 35
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.7e-33 Score=189.22 Aligned_cols=164 Identities=32% Similarity=0.549 Sum_probs=140.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.++|+++|++|+|||||++++.+..+...+.++.+. .......+++..+.+.+||+||++++...+..++..+|++++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 85 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 85 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence 3689999999999999999999998877666666653 335566678888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCCCccCHHHHHHHHH-HcCCCEEEeccCCCCCHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLSTWAVDMNQAQELAE-QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~~l~ 156 (191)
|||++++.++..+..|+..+..... ..+.|+++|+||+|+....+..+++..+++ ..+++++++||++|.|++++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (177)
T 1wms_A 86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165 (177)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence 9999999999999999988876543 257899999999999877788888998888 567899999999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
++|.+.+.+
T Consensus 166 ~~l~~~~~~ 174 (177)
T 1wms_A 166 EEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998865
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=195.40 Aligned_cols=165 Identities=28% Similarity=0.467 Sum_probs=139.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH-HHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA-MRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 79 (191)
..+||+++|.+|||||||++++.+....... ..++.+.......+++..+.+.+|||+|++.+.. ++..++..+|+++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~i 101 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFL 101 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEE
Confidence 3689999999999999999999755432222 2333455556667889999999999999987654 7778889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||+++++++..+..|+..+.......+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++
T Consensus 102 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~ 181 (195)
T 3cbq_A 102 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 181 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHH
Confidence 9999999999999999998887755445799999999999976 567888899999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy11135 159 LVREIKKD 166 (191)
Q Consensus 159 i~~~~~~~ 166 (191)
|++.+.+.
T Consensus 182 l~~~i~~~ 189 (195)
T 3cbq_A 182 AVRQIRLR 189 (195)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988653
No 37
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=195.25 Aligned_cols=163 Identities=33% Similarity=0.537 Sum_probs=138.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILA 108 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999887666666655 33355566788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCCCCCHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~l~~~i 159 (191)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. +.+..+++.++++.+++ +++++||+++.|++++|++|
T Consensus 109 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 187 (201)
T 2hup_A 109 YDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187 (201)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999998887653 45789999999999976 56788899999999999 99999999999999999999
Q ss_pred HHHHHhh
Q psy11135 160 VREIKKD 166 (191)
Q Consensus 160 ~~~~~~~ 166 (191)
.+.+.+.
T Consensus 188 ~~~i~~~ 194 (201)
T 2hup_A 188 ATELIMR 194 (201)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
No 38
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=197.94 Aligned_cols=165 Identities=31% Similarity=0.473 Sum_probs=139.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.+++...+......++..+.+.+|||||++++...+..++.++|++++|
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 98 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLC 98 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEE
Confidence 47899999999999999999999888878888888877777777888888899999999999988888999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEecc
Q psy11135 82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~ 146 (191)
||+++++++..+. .|+..+.... ++.|+++|+||+|+.. ..+..+++..+++.+++ +++++||
T Consensus 99 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 176 (201)
T 2q3h_A 99 FSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence 9999999999987 6888777643 3789999999999864 35678889999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q psy11135 147 KTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 147 ~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
+++.|++++|++|.+.+.+.+.
T Consensus 177 ~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 177 LTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999876544
No 39
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3e-34 Score=195.71 Aligned_cols=165 Identities=32% Similarity=0.602 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV 87 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEE
Confidence 589999999999999999999988776666666553 3344566788888899999999999998889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+... ...+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 88 YDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999888764 335789999999999976 56788899999999999999999999999999999999
Q ss_pred HHHHhhhh
Q psy11135 161 REIKKDKM 168 (191)
Q Consensus 161 ~~~~~~~~ 168 (191)
+.+.+...
T Consensus 167 ~~i~~~~~ 174 (183)
T 2fu5_C 167 RDIKAKMD 174 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99876544
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.5e-33 Score=190.71 Aligned_cols=164 Identities=31% Similarity=0.526 Sum_probs=142.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|.+|+|||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 478999999999999999999999987766666655 3444556678888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||++++.+++.+..|+..+.... .++.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 91 VFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999998887753 35789999999999975 5677888999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy11135 160 VREIKKD 166 (191)
Q Consensus 160 ~~~~~~~ 166 (191)
.+.+.+.
T Consensus 170 ~~~~~~~ 176 (181)
T 2efe_B 170 ARRLPRV 176 (181)
T ss_dssp HHTCC--
T ss_pred HHHHHhc
Confidence 8877553
No 41
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.1e-33 Score=190.48 Aligned_cols=164 Identities=34% Similarity=0.612 Sum_probs=138.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..+||+++|++|+|||||++++.+..+...+.++.+ +.......+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 368999999999999999999999887666666655 3334555667778889999999999988888889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+....+..+++..+++.++++++++||+++.|++++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998887643 3578999999999997677888899999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988653
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.4e-33 Score=189.60 Aligned_cols=162 Identities=30% Similarity=0.522 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|+|||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 94 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 94 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEE
Confidence 689999999999999999999999887777666653 3345566788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+.. ..+..++++++++.++++++++||+++.|++++|++|.
T Consensus 95 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 95 YDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887643 35789999999999975 56778889999999999999999999999999999999
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 174 ~~i~~ 178 (179)
T 1z0f_A 174 KKIYQ 178 (179)
T ss_dssp HHHC-
T ss_pred HHHhh
Confidence 87753
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1e-33 Score=190.60 Aligned_cols=162 Identities=31% Similarity=0.580 Sum_probs=141.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+||+||++++...+..++..+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 57999999999999999999999988766666665533 34456678888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.... .+..|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|+++++++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998887643 35789999999999865 5667888899999999999999999999999999999
Q ss_pred HHHHH
Q psy11135 160 VREIK 164 (191)
Q Consensus 160 ~~~~~ 164 (191)
.+.+.
T Consensus 164 ~~~~~ 168 (170)
T 1r2q_A 164 AKKLP 168 (170)
T ss_dssp HHTSC
T ss_pred HHHHh
Confidence 87654
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.8e-33 Score=191.27 Aligned_cols=164 Identities=30% Similarity=0.512 Sum_probs=143.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.. +.......+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 89 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 89 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEE
Confidence 58999999999999999999999987766666655 33445566788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|.
T Consensus 90 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 90 YDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999988876643 35789999999999965 56778889999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy11135 161 REIKKDK 167 (191)
Q Consensus 161 ~~~~~~~ 167 (191)
+.+.+..
T Consensus 169 ~~~~~~~ 175 (186)
T 2bme_A 169 RKILNKI 175 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9887643
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-33 Score=189.16 Aligned_cols=164 Identities=31% Similarity=0.608 Sum_probs=133.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+.+||+++|.+|+|||||++++.+..+. ..+.++....+ ......++..+.+.+|||||++++...+..++..+|+++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 88 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL 88 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEE
Confidence 4789999999999999999999998864 34555555333 344467888888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.. ..+..++...+++.++++++++||+++.|++++|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 167 (180)
T 2g6b_A 89 LLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA 167 (180)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988876533 5789999999999986 556788889999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy11135 159 LVREIKKD 166 (191)
Q Consensus 159 i~~~~~~~ 166 (191)
|.+.+.+.
T Consensus 168 l~~~~~~~ 175 (180)
T 2g6b_A 168 IAKELKRR 175 (180)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99988653
No 46
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=197.52 Aligned_cols=164 Identities=29% Similarity=0.511 Sum_probs=124.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLC 112 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEE
Confidence 57999999999999999999999888877777777777667777888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEecc
Q psy11135 82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~ 146 (191)
||+++++++..+. .|+..+.... .+.|+++|+||+|+... .+..+++..+++.+++ +++++||
T Consensus 113 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 113 FDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 9999999999986 6877776643 47899999999999763 4677888999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy11135 147 KTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 147 ~~~~~v~~l~~~i~~~~~~~~ 167 (191)
++|.|++++|++|.+.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999987654
No 47
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-33 Score=193.31 Aligned_cols=161 Identities=32% Similarity=0.542 Sum_probs=143.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
.+||+++|.+|+|||||++++.+..+...+.++....+.....+++..+.+.+||+||++++...+..+++.+|++++||
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 97 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 97 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEE
Confidence 58999999999999999999999988888888887777666777888888999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccC
Q psy11135 83 AVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAK 147 (191)
Q Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 147 (191)
|+++++++..+. .|+..+.... ++.|+++|+||+|+.. +.+..+++..+++.+++ +++++||+
T Consensus 98 d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 98 SVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 999999999987 7888777643 4789999999999976 25778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy11135 148 TRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 148 ~~~~v~~l~~~i~~~~~~ 165 (191)
+|.|++++|++|.+.+..
T Consensus 176 ~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988753
No 48
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=191.39 Aligned_cols=167 Identities=33% Similarity=0.514 Sum_probs=143.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|++|||||||++++.+..+...+.++.+ +........++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 88 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 88 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEE
Confidence 58999999999999999999998887666666555 34445566788888899999999999998999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... ++.|+++|+||+|+.. ..+..++...++...+++++++||++|.|++++|++|.
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (181)
T 3tw8_B 89 YDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT 166 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998887643 4789999999999876 45678889999999999999999999999999999999
Q ss_pred HHHHhhhhhhh
Q psy11135 161 REIKKDKMLRG 171 (191)
Q Consensus 161 ~~~~~~~~~~~ 171 (191)
+.+.+.+..+.
T Consensus 167 ~~~~~~~~~~~ 177 (181)
T 3tw8_B 167 ELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhhhhh
Confidence 99987655443
No 49
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=1.9e-33 Score=193.09 Aligned_cols=164 Identities=32% Similarity=0.547 Sum_probs=140.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 478999999999999999999999887666666555 3344556778888889999999999998888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 178 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT 178 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999998887643 45789999999999975 5677888999999999999999999999999999999
Q ss_pred HHHHHhh
Q psy11135 160 VREIKKD 166 (191)
Q Consensus 160 ~~~~~~~ 166 (191)
.+.+.+.
T Consensus 179 ~~~i~~~ 185 (191)
T 2a5j_A 179 AKEIYRK 185 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 50
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.3e-33 Score=190.18 Aligned_cols=163 Identities=31% Similarity=0.560 Sum_probs=135.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||++++...+..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999887766666665433 3556677888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 163 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 163 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 999999999999999988876543 24689999999999976 5678888999999999999999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 164 ~~~~~~ 169 (170)
T 1z08_A 164 CKRMIE 169 (170)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988754
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=190.93 Aligned_cols=164 Identities=27% Similarity=0.525 Sum_probs=143.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|||||||++++.+..+...+.++.+.. .......++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 87 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILM 87 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEE
Confidence 5899999999999999999999988776666666533 344556788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|.
T Consensus 88 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 88 YDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998887643 45789999999999976 46778889999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy11135 161 REIKKDK 167 (191)
Q Consensus 161 ~~~~~~~ 167 (191)
+.+.+..
T Consensus 167 ~~i~~~~ 173 (203)
T 1zbd_A 167 DVICEKM 173 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 52
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.8e-33 Score=188.53 Aligned_cols=162 Identities=27% Similarity=0.513 Sum_probs=141.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|++|+|||||++++.+..+...+.++.+.. .......++..+.+.+|||||++++...+..++..+|++++
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 57999999999999999999999998776666666643 34456678888889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||++++.++..+..|+..+... ..+..|+++|+||+|+.. ..+..++...+++..+++++++||+++.|+++++++|
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i 163 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 163 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 99999999999999998888764 346789999999999976 5677888999999999999999999999999999999
Q ss_pred HHHHH
Q psy11135 160 VREIK 164 (191)
Q Consensus 160 ~~~~~ 164 (191)
.+.+.
T Consensus 164 ~~~i~ 168 (170)
T 1z0j_A 164 SRRIP 168 (170)
T ss_dssp HHHCC
T ss_pred HHHHh
Confidence 87653
No 53
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=198.73 Aligned_cols=166 Identities=31% Similarity=0.485 Sum_probs=136.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+|+|++|||||||++++.+..+...+.++.+. .....+.+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV 92 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIV 92 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEE
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEE
Confidence 589999999999999999999999877666666553 3344566788888899999999999998999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|.
T Consensus 93 ~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 171 (223)
T 3cpj_B 93 YDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171 (223)
T ss_dssp EC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 45789999999999976 56778889999999999999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
+.+.+....
T Consensus 172 ~~i~~~~~~ 180 (223)
T 3cpj_B 172 NTIYQKVSK 180 (223)
T ss_dssp HHHTTCC--
T ss_pred HHHHHHhhh
Confidence 998764433
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2e-33 Score=188.86 Aligned_cols=162 Identities=34% Similarity=0.553 Sum_probs=142.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..+||+++|++|+|||||++++.+..+...+.++.+ +........++..+.+.+|||||++++...+..++..+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 468999999999999999999999887766666665 4445556678888889999999999988888899999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||++++++++.+..|+..+.... .+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|+++++++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 999999999999999998887654 5789999999999976 5667888999999999999999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 987753
No 55
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=190.30 Aligned_cols=164 Identities=38% Similarity=0.681 Sum_probs=141.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|+|||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 47899999999999999999999988777777777766666667788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
||++++++++.+..|+..+.... ..++.|+++|+||+|+.. ..+..++...++..++++++++||+++.|+++++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence 99999999999988888776643 235789999999999875 5677788888999999999999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 162 ~~~~~~ 167 (172)
T 2erx_A 162 LNLEKR 167 (172)
T ss_dssp HHTCCS
T ss_pred HHHHhh
Confidence 876543
No 56
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=7.7e-34 Score=192.74 Aligned_cols=167 Identities=31% Similarity=0.471 Sum_probs=141.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcC-eEEEEEEEeCCChhhHHHHHHhhcccCCEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDG-ETALLDILDTAGQEEYSAMRDQYMRTGEGF 78 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 78 (191)
++.+||+++|++|||||||++++.+..+...+.++.+ +.......+++ ..+.+.+|||||++++...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4689999999999999999999999887666666665 44455566665 567899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCc-EEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVP-MVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l 155 (191)
++|||+++++++..+..|+..+..+.. ....| +++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999888766432 11344 899999999976 567788899999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy11135 156 FYTLVREIKKDK 167 (191)
Q Consensus 156 ~~~i~~~~~~~~ 167 (191)
|++|.+.+.+.+
T Consensus 164 ~~~l~~~~~~~~ 175 (178)
T 2hxs_A 164 FQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhhh
Confidence 999999886543
No 57
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1e-33 Score=193.35 Aligned_cols=162 Identities=27% Similarity=0.436 Sum_probs=142.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 85 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 85 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence 47899999999999999999999998877777887766666677788888999999999999988889999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEecc
Q psy11135 82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~ 146 (191)
||+++++++..+ ..|+..+.... ++.|+++|+||+|+.. ..+..+++..+++.++ ++++++||
T Consensus 86 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 86 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 999999999998 67877776643 4789999999999973 4578888999999988 69999999
Q ss_pred C-CCCCHHHHHHHHHHHHHh
Q psy11135 147 K-TRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 147 ~-~~~~v~~l~~~i~~~~~~ 165 (191)
+ ++.|++++|+.|.+.+.+
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999988764
No 58
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.7e-33 Score=191.04 Aligned_cols=164 Identities=29% Similarity=0.525 Sum_probs=142.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
|+++||+++|++|+|||||++++.+..+...+.++.. +.......+++..+.+.+|||||++++...+..++..+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 5679999999999999999999998887766666665 444556677888888999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..++...+++..+++++++||+++.|+++++++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998887643 35789999999999875 567788889999999999999999999999999999
Q ss_pred HHHHHHh
Q psy11135 159 LVREIKK 165 (191)
Q Consensus 159 i~~~~~~ 165 (191)
|.+.+.+
T Consensus 171 l~~~~~~ 177 (179)
T 2y8e_A 171 VAAALPG 177 (179)
T ss_dssp HHHTCC-
T ss_pred HHHHHhh
Confidence 9876643
No 59
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=5.2e-33 Score=190.57 Aligned_cols=163 Identities=31% Similarity=0.550 Sum_probs=142.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++++...+..++..+|++++|
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 101 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLM 101 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEE
Confidence 58999999999999999999999987666666665333 34456678888899999999999888889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..++++++++.++++++++||+++.|++++|++|.
T Consensus 102 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 102 YDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998887653 45789999999999976 55678889999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 181 ~~i~~~ 186 (189)
T 2gf9_A 181 DVICEK 186 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
No 60
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=190.91 Aligned_cols=163 Identities=31% Similarity=0.471 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccc-eEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+|+|.+|+|||||++++.+..+...+.++.+. .......+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v 104 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLV 104 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEE
Confidence 689999999999999999999998877666666553 3344556778888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||+++.|++++|++|.
T Consensus 105 ~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 105 FDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp EETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999988887643 45789999999999976 56778889999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 184 ~~i~~~ 189 (193)
T 2oil_A 184 KEIFAK 189 (193)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 61
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=3.1e-33 Score=195.61 Aligned_cols=166 Identities=34% Similarity=0.539 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCe----------EEEEEEEeCCChhhHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGE----------TALLDILDTAGQEEYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~~~ 71 (191)
.+||+|+|.+|||||||++++.+..+...+.++.... ......+++. .+.+.+|||||++++...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 104 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 104 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHH
Confidence 5899999999999999999999888765555555432 2334455555 6789999999999999999999
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
+..+|++++|||++++.++..+..|+..+.......+.|+++|+||+|+.. ..+..+++.++++.++++++++||+++.
T Consensus 105 ~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~ 184 (217)
T 2f7s_A 105 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 184 (217)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCC
Confidence 999999999999999999999998887776544436789999999999976 5677888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhh
Q psy11135 151 GVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~~ 168 (191)
|++++|++|.+.+.+...
T Consensus 185 gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 185 NVEKAVETLLDLIMKRME 202 (217)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999876433
No 62
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=193.64 Aligned_cols=164 Identities=31% Similarity=0.523 Sum_probs=134.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+|+|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 104 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 104 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEE
Confidence 68999999999999999999998887666666655 34445566788888899999999999888888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 105 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 105 YDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998887643 35789999999999975 56778888999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy11135 161 REIKKDK 167 (191)
Q Consensus 161 ~~~~~~~ 167 (191)
+.+.+..
T Consensus 184 ~~i~~~~ 190 (200)
T 2o52_A 184 RTILNKI 190 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987643
No 63
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-33 Score=193.72 Aligned_cols=163 Identities=33% Similarity=0.552 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+|+|.+|||||||++++.+..+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 102 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEE
Confidence 68999999999999999999999887666666655 34445556677788899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+.... ..+.|+++|+||+|+.. ..+..+++..+++.++++++++||++|.|++++|++|.
T Consensus 103 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 181 (191)
T 3dz8_A 103 YDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999998887743 45789999999999975 56788889999999999999999999999999999999
Q ss_pred HHHHhh
Q psy11135 161 REIKKD 166 (191)
Q Consensus 161 ~~~~~~ 166 (191)
+.+.+.
T Consensus 182 ~~i~~~ 187 (191)
T 3dz8_A 182 DAICDK 187 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 64
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.6e-33 Score=195.72 Aligned_cols=171 Identities=30% Similarity=0.389 Sum_probs=112.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCCcc-ceEEEEEEEcCe--EEEEEEEeCCChhhHHHHHHhhcccCC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN--HFVDEYDPTIE-DSYRKQVVIDGE--TALLDILDTAGQEEYSAMRDQYMRTGE 76 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (191)
+.++|+++|.+|||||||++++.+. .+...+.++++ +.......+++. .+.+.+|||||++++...+..++..+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 3689999999999999999999988 66667767765 444555667776 788999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCCcEEEEEecCCCCC--CccCHHHHHHHHHHcCCCEEEeccCC-CCC
Q psy11135 77 GFLLVFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCDLST--WAVDMNQAQELAEQFNIPFIKTSAKT-RMG 151 (191)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~ 151 (191)
++++|||++++.++..+..|+..+..... ..+.|+++|+||+|+.. ..+..+++..+++.++++++++||++ +.|
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g 178 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD 178 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence 99999999999999999999998877544 25789999999999976 56778899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q psy11135 152 VDDAFYTLVREIKKDKMLRGK 172 (191)
Q Consensus 152 v~~l~~~i~~~~~~~~~~~~~ 172 (191)
++++|++|.+.+.+....+.+
T Consensus 179 i~~l~~~i~~~~~~~~~~~~~ 199 (208)
T 2yc2_C 179 ADAPFLSIATTFYRNYEDKVA 199 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHH
Confidence 999999999998776554433
No 65
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=8.5e-33 Score=190.02 Aligned_cols=166 Identities=31% Similarity=0.577 Sum_probs=134.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-HHHHHHhhcccCCEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-YSAMRDQYMRTGEGF 78 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~ 78 (191)
..+||+++|.+|||||||++++.+.. +...+.++..+.+.....+++..+.+.+|||+|.+. .......+++.++++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 57899999999999999999999643 444444444455566677889988899999999776 444566778889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHH
Q psy11135 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~ 157 (191)
++|||++++++++.+..|+..+.......+.|+++|+||+|+.. +.+..+++..++..++++++++||++|.|++++|+
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHH
Confidence 99999999999999999988877654445789999999999875 55777888888888999999999999999999999
Q ss_pred HHHHHHHhhh
Q psy11135 158 TLVREIKKDK 167 (191)
Q Consensus 158 ~i~~~~~~~~ 167 (191)
+|.+.+....
T Consensus 165 ~l~~~~~~~~ 174 (192)
T 2cjw_A 165 GIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999886543
No 66
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1e-32 Score=192.41 Aligned_cols=164 Identities=34% Similarity=0.604 Sum_probs=143.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.++|+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..++..+|++++|
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 99 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILV 99 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999887666666655 34445566788888899999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
||++++.++..+..|+..+.... ..+.|+++|+||+|+....+..++...+++.++++++++||+++.|++++|++|.+
T Consensus 100 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 100 YDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999988887643 34789999999999976778888899999999999999999999999999999999
Q ss_pred HHHhhh
Q psy11135 162 EIKKDK 167 (191)
Q Consensus 162 ~~~~~~ 167 (191)
.+.+..
T Consensus 179 ~~~~~~ 184 (213)
T 3cph_A 179 LIQEKI 184 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 67
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.1e-33 Score=191.41 Aligned_cols=163 Identities=36% Similarity=0.599 Sum_probs=134.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|.+|||||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..++..+|++++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 106 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL 106 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence 468999999999999999999999887666666655 3334556778888899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-------CCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-------TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
|||++++.++..+..|+..+... ...+.|+++|+||+|+. ...+..+++..+++..+++++++||++|.|++
T Consensus 107 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 107 LYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 99999999999999998887664 33478999999999985 35677888899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy11135 154 DAFYTLVREIKK 165 (191)
Q Consensus 154 ~l~~~i~~~~~~ 165 (191)
++|++|.+.+.+
T Consensus 186 el~~~l~~~i~~ 197 (199)
T 2p5s_A 186 EAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999988753
No 68
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-33 Score=191.94 Aligned_cols=163 Identities=32% Similarity=0.548 Sum_probs=141.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||++++...+..++..+|++++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 101 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI 101 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence 479999999999999999999999987666666666433 4445667788889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i 159 (191)
|||+++++++..+..|+..+.... ..+.|+++|+||+|+.. ..+..+++.++++.++++++++||+++.|+++++++|
T Consensus 102 V~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 180 (192)
T 2fg5_A 102 VYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180 (192)
T ss_dssp EEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence 999999999999999998887643 45789999999999975 5678889999999999999999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 181 ~~~i~~ 186 (192)
T 2fg5_A 181 SRQIPP 186 (192)
T ss_dssp HHTCC-
T ss_pred HHHHHh
Confidence 887754
No 69
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-33 Score=194.15 Aligned_cols=162 Identities=27% Similarity=0.436 Sum_probs=141.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 106 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC 106 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEE
Confidence 36899999999999999999999998877777777766666667788888999999999999998899999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcC-CCEEEecc
Q psy11135 82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFN-IPFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~-~~~~~~s~ 146 (191)
||+++++++..+ ..|+..+.... ++.|+++|+||+|+.. ..+..+++..+++.++ ++++++||
T Consensus 107 ~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 107 FDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 999999999998 68888776643 4789999999999963 3577888999999988 69999999
Q ss_pred C-CCCCHHHHHHHHHHHHHh
Q psy11135 147 K-TRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 147 ~-~~~~v~~l~~~i~~~~~~ 165 (191)
+ ++.|++++|+.|.+.+.+
T Consensus 185 k~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhh
Confidence 9 689999999999988764
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.5e-33 Score=193.08 Aligned_cols=164 Identities=34% Similarity=0.546 Sum_probs=137.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
|..+||+++|.+|||||||++++.+..+...+.++....+......++..+.+.+|||||++++...+..++..+|++++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 35789999999999999999999999887777777777666667788888899999999999998888999999999999
Q ss_pred EEeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEec
Q psy11135 81 VFAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTS 145 (191)
Q Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s 145 (191)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+... .+..+++..++...++ +++++|
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 9999999999988 56777776542 47899999999999653 3677788889999987 899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy11135 146 AKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~~ 166 (191)
|++|.|++++|++|.+.+...
T Consensus 181 A~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
No 71
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.6e-32 Score=189.03 Aligned_cols=161 Identities=32% Similarity=0.530 Sum_probs=137.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeE------------------------------
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGET------------------------------ 50 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------------------------ 50 (191)
+.+||+|+|++|+|||||++++.+..+...+.++.+..+ .....+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 368999999999999999999999987777767665333 3334444433
Q ss_pred -------EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 51 -------ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 51 -------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
+.+.+|||||++++...+..++..+|++++|||++++.++..+..|+..+.... ..|+++|+||+|+...
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~ 162 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKF 162 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-C
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccc
Confidence 779999999999999999999999999999999999999999999988887643 3899999999995446
Q ss_pred ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 124 AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.+..+++..+++..+++++++||+++.|++++|++|.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 163 QVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999988765
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=9e-33 Score=189.90 Aligned_cols=162 Identities=31% Similarity=0.591 Sum_probs=134.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+++|.+|+|||||++++.+..+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 105 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 105 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEE
Confidence 68999999999999999999998887666666655 34445566788888899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-CCCEEEeccCCCCCHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTL 159 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~v~~l~~~i 159 (191)
||++++.++..+..|+..+... ...+.|+++|+||+|+.. ..+..++++.+++.+ +++++++||++|.|++++|++|
T Consensus 106 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l 184 (192)
T 2il1_A 106 YDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184 (192)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999998877664 345789999999999976 567788888998885 7899999999999999999999
Q ss_pred HHHHHh
Q psy11135 160 VREIKK 165 (191)
Q Consensus 160 ~~~~~~ 165 (191)
.+.+.+
T Consensus 185 ~~~i~~ 190 (192)
T 2il1_A 185 VDDILK 190 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 73
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.9e-32 Score=189.55 Aligned_cols=161 Identities=32% Similarity=0.549 Sum_probs=141.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
..+||+++|.+|||||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEE
Confidence 36899999999999999999999998877777777766666677888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEecc
Q psy11135 82 FAVNSMKSFEDI-GSYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~ 146 (191)
||+++++++..+ ..|...+.... ++.|+++|+||+|+... .+..+++..+++..+. +++++||
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 104 FSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 999999999998 56777666543 47899999999999763 3677788899999998 8999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy11135 147 KTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 147 ~~~~~v~~l~~~i~~~~~ 164 (191)
++|.|++++|++|.+.+.
T Consensus 182 ~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999988764
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.7e-33 Score=193.59 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=139.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
++.+||+++|.+|||||||++++....+...+.+++...+.....+++..+.+.+|||||++++...+..++..+|++++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 107 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 107 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 35799999999999999999999999988888888887777777888889889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEec
Q psy11135 81 VFAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTS 145 (191)
Q Consensus 81 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s 145 (191)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+... .+..+++..+++.+++ +++++|
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 108 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 99999999999997 7877777653 57899999999998653 2677888899999996 599999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy11135 146 AKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~ 163 (191)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998753
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=2.3e-32 Score=185.93 Aligned_cols=165 Identities=33% Similarity=0.558 Sum_probs=128.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEc-CeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVID-GETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+.++|+++|++|+|||||++++.+..+...+.++.+ +.......++ +..+.+.+||+||++.+...+..+++.+|+++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 86 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV 86 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence 478999999999999999999999887766666654 3444444555 55677999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC---CCCCcEEEEEecCCCCC--CccCHHHHHHHHH-HcCCCEEEeccCCCCCHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKD---AEEVPMVLVGNKCDLST--WAVDMNQAQELAE-QFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~v~ 153 (191)
+|||++++.++..+..|+..+..... ..+.|+++|+||+|+.. ..+..+++.++++ ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (182)
T 1ky3_A 87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166 (182)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence 99999999999999999988876542 35789999999999954 4467888888888 566899999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy11135 154 DAFYTLVREIKKD 166 (191)
Q Consensus 154 ~l~~~i~~~~~~~ 166 (191)
++|++|.+.+.+.
T Consensus 167 ~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 167 TAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=6.7e-34 Score=193.70 Aligned_cols=161 Identities=34% Similarity=0.550 Sum_probs=125.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|+|||||++++.+..+...+.++....+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILA 86 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEE
Confidence 57899999999999999999999988877777777655544445667777788999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCc-----------cCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWA-----------VDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
||+++++++..+. .|+..+.... ++.|+++|+||+|+.... +..+++..+++.+++ +++++||++
T Consensus 87 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 87 FSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 9999999999987 6887777653 378999999999986532 367888899999996 999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy11135 149 RMGVDDAFYTLVREIK 164 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~ 164 (191)
|.|++++|++|.+.+.
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 77
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=4.2e-32 Score=187.33 Aligned_cols=163 Identities=13% Similarity=0.239 Sum_probs=128.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
...||+|+|.+|||||||++++.+..+.. .+.++.+.... .++...+.+.+|||||++++...+..++..+|++++
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE---TFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE---EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE---EEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 46899999999999999999999988776 66676663322 234455669999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCC-------CCCcEEEEEecCCCCCCccCHHHHHHH-----HHHcCCCEEEeccCC
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDA-------EEVPMVLVGNKCDLSTWAVDMNQAQEL-----AEQFNIPFIKTSAKT 148 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~ 148 (191)
|||+++++++..+..|+..+...... .+.|+++|+||+|+.......+....+ ++..+++++++||++
T Consensus 93 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 172 (199)
T 4bas_A 93 VVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLK 172 (199)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTT
T ss_pred EEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCC
Confidence 99999999999999998887654211 378999999999997642222222222 244678899999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q psy11135 149 RMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~~~ 167 (191)
+.|++++|++|.+.+.+..
T Consensus 173 g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 173 GTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TBTHHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 9999999999999987654
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=1.8e-31 Score=178.77 Aligned_cols=157 Identities=17% Similarity=0.295 Sum_probs=122.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEe
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFA 83 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 83 (191)
+||+++|++|||||||++++.+..+.. +.||.+.. ... ++...+.+.+|||||++++...+..++..+|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEE--EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEE--EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999877654 34454422 222 33344568999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-HH----HHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 84 VNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-LA----EQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 84 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+++++++..+..|+..+.......+.|+++|+||+|+... ...++... +. +..+++++++||++|.|++++|++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 155 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA-MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 155 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC-CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence 9999999999999888776444567899999999999763 22232222 11 123457999999999999999999
Q ss_pred HHHHHHh
Q psy11135 159 LVREIKK 165 (191)
Q Consensus 159 i~~~~~~ 165 (191)
|.+.+.+
T Consensus 156 l~~~i~~ 162 (164)
T 1r8s_A 156 LSNQLRN 162 (164)
T ss_dssp HHHHC--
T ss_pred HHHHHhh
Confidence 9987754
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=4.2e-32 Score=189.99 Aligned_cols=167 Identities=25% Similarity=0.448 Sum_probs=139.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE--cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
..+||+++|.+|||||||++++.+..+...+.++.+......... ++..+.+.+|||||++.+...+..++..+|+++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 479999999999999999999998887766666666443333322 234478999999999998888889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYT 158 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~ 158 (191)
+|||+++..++..+..|+..+.... ..+.|+++|+||+|+... .+..++...+++..+++++++||++|.|++++|++
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 9999999999999999998887653 345899999999999874 67888888999999999999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy11135 159 LVREIKKDKML 169 (191)
Q Consensus 159 i~~~~~~~~~~ 169 (191)
|.+.+.+....
T Consensus 169 l~~~~~~~~~~ 179 (218)
T 4djt_A 169 LARIFTGRPDL 179 (218)
T ss_dssp HHHHHHCCTTC
T ss_pred HHHHHhccccc
Confidence 99998765443
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=1.4e-31 Score=183.39 Aligned_cols=160 Identities=21% Similarity=0.303 Sum_probs=127.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+|+|.+|||||||++++.+..+...+.++.+..+.. ++...+.+.+|||||++++...+..++..+|++++|
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~---~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE---EEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE---EEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 47999999999999999999999988776666666644332 233355689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++..... ...+++++++||++|.|++++|
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHH
Confidence 9999999999999998887664444678999999999997632 223222211 1234579999999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
++|.+.+.+
T Consensus 177 ~~l~~~~~~ 185 (188)
T 1zd9_A 177 QWLIQHSKS 185 (188)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHHh
Confidence 999887654
No 81
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.98 E-value=3.6e-31 Score=181.64 Aligned_cols=156 Identities=19% Similarity=0.310 Sum_probs=126.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|||||||++++.+..+. .+.++.+.. .....+++ +.+.+|||||++++...+..+++.+|++++|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4689999999999999999999988764 344444443 34455666 5689999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH------------cCCCEEEeccCCC
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ------------FNIPFIKTSAKTR 149 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~~~ 149 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. .+..++..+.... .+++++++||++|
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 176 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR 176 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-CCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence 99999999999999998887654446799999999999976 5566666655432 3467999999999
Q ss_pred CCHHHHHHHHHHH
Q psy11135 150 MGVDDAFYTLVRE 162 (191)
Q Consensus 150 ~~v~~l~~~i~~~ 162 (191)
.|++++|++|.+.
T Consensus 177 ~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 177 NGYLEAFQWLSQY 189 (190)
T ss_dssp BSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998753
No 82
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=1.2e-31 Score=184.69 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=129.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC-----------CccceE-EEEE-EEcCeEEEEEEEeCCChhhHHHHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-----------TIEDSY-RKQV-VIDGETALLDILDTAGQEEYSAMRD 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~-----------~~~~~~-~~~~-~~~~~~~~~~~~D~~g~~~~~~~~~ 69 (191)
.+||+++|.+|||||||++.+.+.. ...+.+ +.+..+ .... .+++..+.+.+|||||++++...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 92 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRK 92 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHH
Confidence 6899999999999999997776544 333222 221111 1111 3456778899999999999999999
Q ss_pred hhcccCCEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEE
Q psy11135 70 QYMRTGEGFLLVFAVN------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFI 142 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~ 142 (191)
.+++.+|++++|||++ +.+++..+..|+..+.. ...+.|+++|+||+|+.. .+..+++.++++.+++ +++
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~ 169 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIVIQVNKRDLPD-ALPVEMVRAVVDPEGKFPVL 169 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEEEEEECTTSTT-CCCHHHHHHHHCTTCCSCEE
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEEEEEEchhccc-ccCHHHHHHHHHhcCCceEE
Confidence 9999999999999999 56677777777766632 346789999999999976 4788899999999999 999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
++||++|.|++++|++|.+.+.+..
T Consensus 170 ~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 170 EAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887754
No 83
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.98 E-value=6.5e-31 Score=179.63 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=128.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|++|||||||++++.+.. ...+.++.+.. ......++ +.+.+|||||++++...+..+++.+|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 47899999999999999999999887 55555665533 33344444 5589999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+... ...++..+... ..+++++++||+++.|+++++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence 999999999999999888876544567899999999999763 23333332221 345689999999999999999
Q ss_pred HHHHHHHHhh
Q psy11135 157 YTLVREIKKD 166 (191)
Q Consensus 157 ~~i~~~~~~~ 166 (191)
++|.+.+.+.
T Consensus 172 ~~l~~~i~~~ 181 (186)
T 1ksh_A 172 DWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=1.3e-31 Score=184.89 Aligned_cols=156 Identities=18% Similarity=0.299 Sum_probs=121.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|++|||||||++++.+..+. .+.++.+.. .....+++ +.+.+|||||++++...+..+++.+|++++|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 5789999999999999999999887753 344444433 23455666 5689999999999988889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----------------cCCCEEEe
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----------------FNIPFIKT 144 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 144 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. .+..+++.++... .+++++++
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 178 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEEC
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-cCCHHHHHHHhCcccccccccccccccccCceEEEEEE
Confidence 99999999999999998887654446799999999999976 5677777766553 24579999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q psy11135 145 SAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~ 162 (191)
||++|.|++++|++|.+.
T Consensus 179 SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 179 SVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp BTTTTBSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999998754
No 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.98 E-value=3e-32 Score=191.17 Aligned_cols=165 Identities=27% Similarity=0.496 Sum_probs=140.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
..+||+++|.+|||||||+++++.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..++..+|++++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 93 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEE
Confidence 579999999999999999999776665555555554 4444556678888899999999999998888999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|||++++.++..+..|+..+.... .+.|+++|+||+|+....... +...+++..+++++++||++|.|++++|++|.
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 94 MFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCG-GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999999988753 478999999999998755443 56678888899999999999999999999999
Q ss_pred HHHHhhhhh
Q psy11135 161 REIKKDKML 169 (191)
Q Consensus 161 ~~~~~~~~~ 169 (191)
+.+......
T Consensus 171 ~~l~~~~~~ 179 (221)
T 3gj0_A 171 RKLIGDPNL 179 (221)
T ss_dssp HHHHTCTTC
T ss_pred HHHHhCccc
Confidence 998776543
No 86
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=1.4e-30 Score=175.50 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=126.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|++|+|||||++++.+..+.. +.++.+. ......++ ...+.+|||||++++...+..+++.+|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 46899999999999999999999888643 3444442 23334455 45589999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HH----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-EL----AEQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~----~~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++.. .+ +...+++++++||+++.|++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM 160 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence 9999999999998888887664444678999999999997632 222222 22 22345689999999999999999
Q ss_pred HHHHHHHHhh
Q psy11135 157 YTLVREIKKD 166 (191)
Q Consensus 157 ~~i~~~~~~~ 166 (191)
++|.+.+.+.
T Consensus 161 ~~l~~~i~~~ 170 (171)
T 1upt_A 161 EWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhc
Confidence 9999988653
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.2e-31 Score=181.38 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=125.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|.+|||||||++++.+..+. .+.++.+.. .....+++ +.+.+|||||++++...+..++..+|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5789999999999999999999988765 445555422 23344554 5689999999999988889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. ....++..+... ..+++++++||++|.|+++++
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC-CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 99999999999999998887654446789999999999975 334444443332 345689999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy11135 157 YTLVREIKKDKM 168 (191)
Q Consensus 157 ~~i~~~~~~~~~ 168 (191)
++|.+.+.+...
T Consensus 170 ~~l~~~~~~~~~ 181 (187)
T 1zj6_A 170 EWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHHHHhh
Confidence 999998865443
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=178.94 Aligned_cols=160 Identities=18% Similarity=0.267 Sum_probs=128.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.+||+++|.+|||||||++++.+.. +...+.++.+ .......+++ +.+.+|||||++++...+..++..+|++++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 57899999999999999999999877 4555555555 3333444554 458999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCC--CCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHH
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDA--EEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~ 153 (191)
|||+++++++..+..|+..+...... .+.|+++|+||+|+.. ....++..+... ..+++++++||+++.|++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 175 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD-AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQ 175 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT-CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc-CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHH
Confidence 99999999999999998888765433 5789999999999975 345555555543 235789999999999999
Q ss_pred HHHHHHHHHHHh
Q psy11135 154 DAFYTLVREIKK 165 (191)
Q Consensus 154 ~l~~~i~~~~~~ 165 (191)
++|++|.+.+.+
T Consensus 176 ~l~~~l~~~i~~ 187 (190)
T 2h57_A 176 EGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.4e-30 Score=177.43 Aligned_cols=159 Identities=23% Similarity=0.281 Sum_probs=122.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|++|||||||++++.+..+. .+.++.+. .......+ .+.+.+|||||++.+...+..++..+|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~-~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF-NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE-EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe-EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999999877542 33344442 22334445 35689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++..+.. ...+++++++||++|.|++++|
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence 9999999999998888877654344678999999999997632 333332221 1234579999999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
++|.+.+.+
T Consensus 170 ~~l~~~~~~ 178 (181)
T 1fzq_A 170 NWVCKNVNA 178 (181)
T ss_dssp HHHHHTC--
T ss_pred HHHHHHHHh
Confidence 999887754
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.1e-30 Score=179.53 Aligned_cols=158 Identities=17% Similarity=0.298 Sum_probs=118.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|||||||++++.+..+.. +.+|.+ ........+ .+.+.+|||||++++...+..++..+|++++|
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999998877653 334444 222223333 45689999999999988999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-HH----HHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-LA----EQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~----~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+... ...++... +. +..+++++++||++|.|++++|
T Consensus 104 ~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 182 (192)
T 2b6h_A 104 VDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182 (192)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHH
Confidence 999999999999999888876544467899999999999763 22222221 11 1234579999999999999999
Q ss_pred HHHHHHHH
Q psy11135 157 YTLVREIK 164 (191)
Q Consensus 157 ~~i~~~~~ 164 (191)
++|.+.+.
T Consensus 183 ~~l~~~i~ 190 (192)
T 2b6h_A 183 DWLSHELS 190 (192)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99988764
No 91
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=4e-30 Score=190.37 Aligned_cols=161 Identities=32% Similarity=0.521 Sum_probs=143.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVF 82 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 82 (191)
.++|+++|.+|+|||||++++.+..+...+.+++...+.....+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 234 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICF 234 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEE
Confidence 58999999999999999999999988888888888777777788899989999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-------------CccCHHHHHHHHHHcCC-CEEEeccC
Q psy11135 83 AVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-------------WAVDMNQAQELAEQFNI-PFIKTSAK 147 (191)
Q Consensus 83 d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 147 (191)
|++++.++..+. .|+..+.... .+.|+++|+||+|+.. ..+..+++..+++..++ +++++||+
T Consensus 235 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 235 SLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred eCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 999999999887 6777776643 3789999999999854 35778889999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy11135 148 TRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 148 ~~~~v~~l~~~i~~~~~~ 165 (191)
+|.|++++|+.|.+.+..
T Consensus 313 ~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 92
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.7e-33 Score=193.48 Aligned_cols=162 Identities=39% Similarity=0.694 Sum_probs=130.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.+||+|+|.+|||||||++++.+..+...+.++.. +.......+++..+.+.+|||||++++...+..++..+|++++|
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 112 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 112 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999998887666555554 44455667788888899999999999988888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||++++++++.+..|+..+... ...+.|+++|+||+|+.. ..+..+++..+++.++++++++||+++.|++++|++|.
T Consensus 113 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~ 191 (199)
T 3l0i_B 113 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191 (199)
T ss_dssp C-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred EECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999888664 335789999999999976 44566677889999999999999999999999999998
Q ss_pred HHHHh
Q psy11135 161 REIKK 165 (191)
Q Consensus 161 ~~~~~ 165 (191)
+.+.+
T Consensus 192 ~~l~~ 196 (199)
T 3l0i_B 192 AEIKK 196 (199)
T ss_dssp TTTTT
T ss_pred HHHHH
Confidence 77654
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.5e-30 Score=177.23 Aligned_cols=156 Identities=17% Similarity=0.256 Sum_probs=123.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+ ..+.++.+... ....+++ +.+.+|||||++++...+..++..+|++++|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 579999999999999999999998887 34444444332 3344555 5689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHH-----HHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELA-----EQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.. ....++..+.. ...+++++++||++|.|++++|
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE-CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT-CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc-CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 99999999999999988887644346789999999999976 23344443332 2235689999999999999999
Q ss_pred HHHHHH
Q psy11135 157 YTLVRE 162 (191)
Q Consensus 157 ~~i~~~ 162 (191)
++|.+.
T Consensus 175 ~~l~~~ 180 (181)
T 2h17_A 175 EWMMSR 180 (181)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 998753
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-33 Score=193.59 Aligned_cols=160 Identities=33% Similarity=0.556 Sum_probs=136.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+...+.+++.+.+.....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 108 (204)
Confidence 46899999999999999999999888777777777766666667778888889999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCC-------------ccCHHHHHHHHHHcCC-CEEEecc
Q psy11135 82 FAVNSMKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTW-------------AVDMNQAQELAEQFNI-PFIKTSA 146 (191)
Q Consensus 82 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~~~~~~~~~~~~~~-~~~~~s~ 146 (191)
||+++++++..+. .|+..+.... .+.|+++|+||+|+... .+..+++..+++.+++ +++++||
T Consensus 109 ~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 109 FSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 9999999999887 6766665532 37899999999999752 4555667788888887 9999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy11135 147 KTRMGVDDAFYTLVREI 163 (191)
Q Consensus 147 ~~~~~v~~l~~~i~~~~ 163 (191)
++|.|++++|++|.+.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999988764
No 95
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=4.2e-29 Score=172.47 Aligned_cols=164 Identities=34% Similarity=0.544 Sum_probs=138.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.++|+++|++|||||||++++.+..+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..++..++++++|
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 58999999999999999999999887666666654 33345667888888899999999998888888888899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++..++..+..|+..+... ...+.|+++|+||+|+.. .....+++..++...++.++++|++++.+++++++.|.
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 85 YDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163 (199)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999998888888776553 234689999999999976 55677888999999999999999999999999999999
Q ss_pred HHHHhhh
Q psy11135 161 REIKKDK 167 (191)
Q Consensus 161 ~~~~~~~ 167 (191)
+.+.+..
T Consensus 164 ~~~~~~~ 170 (199)
T 2f9l_A 164 TEIYRIV 170 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887643
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.7e-30 Score=178.02 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=126.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|++|||||||++++....+.. +.++.+.. ......++ +.+.+|||||++++...+..+++.+|++++|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 57999999999999999999998777643 34444422 23344443 5589999999998888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH-H----HHHcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE-L----AEQFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+.... ..++... + +...+++++++||+++.|+++++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHH
Confidence 9999999999999888887765455689999999999997632 2222222 1 12234579999999999999999
Q ss_pred HHHHHHHHhhh
Q psy11135 157 YTLVREIKKDK 167 (191)
Q Consensus 157 ~~i~~~~~~~~ 167 (191)
++|.+.+.+..
T Consensus 176 ~~l~~~i~~~~ 186 (189)
T 2x77_A 176 DWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 99999887643
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-30 Score=176.50 Aligned_cols=160 Identities=15% Similarity=0.242 Sum_probs=123.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.++|+++|++|||||||++++.+..+ ..+.++.+.. .....+++ ..+.+|||||++++...+..++..+|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 579999999999999999999997776 3444454422 23344554 5589999999999888889999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-----cCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-----FNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+... ...++..+.... .+++++++||+++.|+++++
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 171 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA-LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGL 171 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHH
Confidence 999999999999999888876544568999999999999763 334444333221 23579999999999999999
Q ss_pred HHHHHHHHhh
Q psy11135 157 YTLVREIKKD 166 (191)
Q Consensus 157 ~~i~~~~~~~ 166 (191)
++|.+.+.+.
T Consensus 172 ~~l~~~~~~~ 181 (183)
T 1moz_A 172 DWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988653
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=5e-30 Score=176.72 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=119.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEE-cCeEEEEEEEeCCChhhHHHHH---HhhcccCCE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI-DGETALLDILDTAGQEEYSAMR---DQYMRTGEG 77 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~---~~~~~~~~~ 77 (191)
+.+||+++|.+|||||||++++.+....................+ ++..+.+.+|||||++++.... ..+++.+|+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 478999999999999999998877543322111111111222223 3566779999999999887666 788999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------CccCHHHHHHHHH----HcCCCEEE
Q psy11135 78 FLLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------WAVDMNQAQELAE----QFNIPFIK 143 (191)
Q Consensus 78 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~----~~~~~~~~ 143 (191)
+++|||++++ +++..+..|+..+... .++.|+++|+||+|+.. +.+..++...+++ ..++++++
T Consensus 99 ~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e 176 (196)
T 3llu_A 99 LIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYL 176 (196)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEE
Confidence 9999999997 6777777777766432 35789999999999865 2344455677777 67889999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q psy11135 144 TSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~ 163 (191)
+||++ .|++++|+.|++.+
T Consensus 177 ~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 177 TSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp ECTTS-THHHHHHHHHHHHT
T ss_pred EEech-hhHHHHHHHHHHHh
Confidence 99999 99999999998764
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1.1e-28 Score=172.07 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=115.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCe-EEEEEEEeCCChhhHHH-HHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TALLDILDTAGQEEYSA-MRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i 79 (191)
+.+||+++|++|||||||++++.+..+...+.++...... ..+++. .+.+.+|||||++++.. .+..++..+|+++
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 5789999999999999999999998887777655433322 455543 56799999999999987 7888899999999
Q ss_pred EEEeCCChh-hHHHHHHHHHHHHhh--cCCCCCcEEEEEecCCCCCCccCHHHHHHHHH---------------------
Q psy11135 80 LVFAVNSMK-SFEDIGSYREQIKRV--KDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE--------------------- 135 (191)
Q Consensus 80 ~v~d~~~~~-s~~~~~~~~~~~~~~--~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--------------------- 135 (191)
+|||+++.+ ++.....++..+... ....+.|+++|+||+|+.......+....+.+
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999999854 455555555444322 23457899999999999763322111111111
Q ss_pred ---------------Hc--CCCEEEeccCCC------CCHHHHHHHHHHH
Q psy11135 136 ---------------QF--NIPFIKTSAKTR------MGVDDAFYTLVRE 162 (191)
Q Consensus 136 ---------------~~--~~~~~~~s~~~~------~~v~~l~~~i~~~ 162 (191)
.+ +++|+++||++| .|++++|++|.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999765
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=3e-30 Score=176.16 Aligned_cols=164 Identities=22% Similarity=0.324 Sum_probs=118.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCCccceEE-EEEEE---cCeEEEEEEEeCCChhhHHHHHHhhcccCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN--HFVDEYDPTIEDSYR-KQVVI---DGETALLDILDTAGQEEYSAMRDQYMRTGE 76 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 76 (191)
.+||+++|++|||||||++++.+. .+...+.++.+..+. ..... ++..+.+.+|||+|++++...+..++..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 689999999999999999999985 344445555543322 22222 235667899999999999888888899999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC----HHHHHHHHHHcCCC----EEEeccC
Q psy11135 77 GFLLVFAVNSM-KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD----MNQAQELAEQFNIP----FIKTSAK 147 (191)
Q Consensus 77 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~----~~~~s~~ 147 (191)
++++|||++++ .++..+..|+..+.... ++.|+++|+||+|+...... .+....+++.++++ ++++||+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT 159 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence 99999999997 57888999998876542 46899999999998752211 23345566667776 9999999
Q ss_pred CCC-CHHHHHHHHHHHHHhhhh
Q psy11135 148 TRM-GVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 148 ~~~-~v~~l~~~i~~~~~~~~~ 168 (191)
++. +++++++.|.+.+.+.+.
T Consensus 160 ~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 160 EESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp SCCHHHHHHHHHHHHHHHCC--
T ss_pred cCchhHHHHHHHHHHHHhcccc
Confidence 997 999999999988876443
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=2.4e-29 Score=168.84 Aligned_cols=153 Identities=16% Similarity=0.267 Sum_probs=113.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCC-ccceEEEEEEEcCeEEEEEEEeCCChhhHH------HHHHhhcc
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDGETALLDILDTAGQEEYS------AMRDQYMR 73 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~ 73 (191)
|++++|+++|++|||||||++++.+..+.....++ +.+........++. .+.+|||||+.++. .....++.
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 78 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE--KFKVVDLPGVYSLTANSIDEIIARDYII 78 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE--EEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc--EEEEEECCCcccCCCcchhHHHHHHHHh
Confidence 78999999999999999999999987643333232 23333344455554 58899999987653 34455554
Q ss_pred --cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 74 --TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 74 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
.++++++++|+++.+. ...|+..+.. .+.|+++|+||+|+.. ..+. .+...+++.++++++++||++|.
T Consensus 79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 79 NEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 150 (165)
T ss_dssp HHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChh-hHHHHHHHHhCCCEEEEEcCCCC
Confidence 7999999999998654 3456655544 2689999999999864 2333 24677888889999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVREI 163 (191)
Q Consensus 151 ~v~~l~~~i~~~~ 163 (191)
|++++|++|.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 102
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=183.49 Aligned_cols=159 Identities=17% Similarity=0.293 Sum_probs=119.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+++||+|+|.+|||||||++++.+..+.... +|.... ... ++...+.+.+|||||++.+...+..++..+|++++|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~-~~~--~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFN-VET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEE-EEE--EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceE-EEE--EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999988765443 333322 222 333445689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH-HHHH----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ-ELAE----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..++..+.......+.|+++|+||+|+.... ..++.. .+.. ..+++++++||++|.|++++|
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 9999999999999888887665555689999999999997633 222222 2211 124569999999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
++|.+.+.+
T Consensus 319 ~~l~~~l~~ 327 (329)
T 3o47_A 319 DWLSNQLRN 327 (329)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999988764
No 103
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=1.5e-28 Score=179.94 Aligned_cols=164 Identities=20% Similarity=0.299 Sum_probs=127.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH-----HHHHHhhccc
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY-----SAMRDQYMRT 74 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~ 74 (191)
..+||+++|.+|||||||++++.+.. .......++.........+++ .+.+.+|||||++++ ...+..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 47899999999999999999999874 333333333333333344444 567999999999988 5678888899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCC--Cc-----cCHHHHHHHHHHcC---CCEEE
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLST--WA-----VDMNQAQELAEQFN---IPFIK 143 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~--~~-----~~~~~~~~~~~~~~---~~~~~ 143 (191)
+|++++|||++++++++.+..|...+.... ..++.|+++|+||+|+.. .. +..+++.++++.+| +++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999998877755543321 245789999999999976 22 45577888999987 78999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 144 TSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
+||++ .++.++|..+++.+.+..
T Consensus 161 tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred eeecC-ChHHHHHHHHHHHHcCCH
Confidence 99999 899999999888765543
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=1.2e-27 Score=164.18 Aligned_cols=160 Identities=34% Similarity=0.552 Sum_probs=136.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
.++|+++|++|||||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|+.++...+..++..++++++|
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 108 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLV 108 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEE
Confidence 4899999999999999999999998776666666633 355667888888889999999988888888888899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
||+++..+++.+..|+..+... .....|+++++||+|+.. .....+++..++...++.++++|++++.+++++++.|.
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 109 YDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187 (191)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999988888888776553 234689999999999976 55677889999999999999999999999999999998
Q ss_pred HHH
Q psy11135 161 REI 163 (191)
Q Consensus 161 ~~~ 163 (191)
+.+
T Consensus 188 ~~i 190 (191)
T 1oix_A 188 TEI 190 (191)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 105
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=2.2e-27 Score=167.15 Aligned_cols=165 Identities=19% Similarity=0.211 Sum_probs=116.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCCh------hh----HHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQ------EE----YSAMRDQ 70 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~------~~----~~~~~~~ 70 (191)
+.++|+|+|.+|||||||++++.+..+. .....++..........++ ..+.+|||||+ +. +.. ...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence 3689999999999999999999988753 2222233333333333343 45889999998 33 222 334
Q ss_pred hcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHH---HHHHHHHHcC--CCEE
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMN---QAQELAEQFN--IPFI 142 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~---~~~~~~~~~~--~~~~ 142 (191)
++..+|++++|||++++.++. ....|+..+... ..+.|+++|+||+|+.. ..+..+ ....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 577889999999999987754 223455544432 24789999999999976 344443 4566777777 8999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKKDKMLRG 171 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~~~~~~~ 171 (191)
++||++|.|++++|++|.+.+.+.+...+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~~~~ 211 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQAESI 211 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987665433
No 106
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.96 E-value=2.2e-28 Score=167.44 Aligned_cols=158 Identities=20% Similarity=0.268 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC-----------hhhHHHHHHhhc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG-----------QEEYSAMRDQYM 72 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~ 72 (191)
+||+++|++|||||||++++.+..+...+.++..... .....+ .+.+||||| ++.+...+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~-~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI-IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC-EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee-EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999998886655555433221 122233 478999999 677788888887
Q ss_pred cc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCC--
Q psy11135 73 RT-GEGFLLVFAVNSMKSFEDI-GSYREQ--------IKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP-- 140 (191)
Q Consensus 73 ~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 140 (191)
.. +++++++|++.+..++..+ ..|... +.......+.|+++|+||+|+.... .++..++++.++.+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~ 154 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPLS 154 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCGG
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH--HHHHHHHHHHhhhhhh
Confidence 77 7877777888777777766 445432 2222223578999999999997644 56788888888875
Q ss_pred -----EEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 141 -----FIKTSAKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 141 -----~~~~s~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
++++||++|.|++++|++|.+.+.+.+.
T Consensus 155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred ccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 6999999999999999999998876543
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=7.6e-28 Score=187.03 Aligned_cols=159 Identities=16% Similarity=0.265 Sum_probs=124.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLV 81 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 81 (191)
+.+||+++|.+|||||||++++.+..+... .+|.+..+ .. ++...+.+.+|||||++.+...+..+++.+|++++|
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~~~~-~~--~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFNV-ET--VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE-EE--EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccceeE-EE--EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 579999999999999999999999886543 34444332 22 333445689999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH-----HcCCCEEEeccCCCCCHHHHH
Q psy11135 82 FAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE-----QFNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~l~ 156 (191)
||+++++++..+..|+..+.......+.|+++|+||+|+... ...++...... ..+++++++||++|.|++++|
T Consensus 397 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 397 VDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA-MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC-CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred EECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC-CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 999999999999999988876555568999999999998762 23333222111 123459999999999999999
Q ss_pred HHHHHHHHh
Q psy11135 157 YTLVREIKK 165 (191)
Q Consensus 157 ~~i~~~~~~ 165 (191)
++|.+.+.+
T Consensus 476 ~~l~~~~~~ 484 (497)
T 3lvq_E 476 TWLTSNYKS 484 (497)
T ss_dssp HHHHHHCC-
T ss_pred HHHHHHHHh
Confidence 999987754
No 108
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.3e-29 Score=179.96 Aligned_cols=162 Identities=25% Similarity=0.368 Sum_probs=117.0
Q ss_pred CeeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCccCCc-c-ceEE--------------EEEEEcCeEEEE
Q psy11135 2 AEYKLVVVGAG---------GVGKSALTIQLIQ---NHFVDEYDPTI-E-DSYR--------------KQVVIDGETALL 53 (191)
Q Consensus 2 ~~~~i~v~G~~---------~~GKStli~~l~~---~~~~~~~~~~~-~-~~~~--------------~~~~~~~~~~~~ 53 (191)
+.+||+++|.+ |||||||++++.+ ..+...+.+++ + +... ....+++..+.+
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 97 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKM 97 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CE
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEE
Confidence 57999999999 9999999999998 45555555554 1 1100 011245677789
Q ss_pred EEEe-----------------------CCChhhHHHHHHhhcc---------------------cCCEEEEEEeCCCh--
Q psy11135 54 DILD-----------------------TAGQEEYSAMRDQYMR---------------------TGEGFLLVFAVNSM-- 87 (191)
Q Consensus 54 ~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-- 87 (191)
.+|| ++|++++...+..++. ++|++++|||++++
T Consensus 98 ~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~ 177 (255)
T 3c5h_A 98 HIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMN 177 (255)
T ss_dssp EEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC---
T ss_pred EEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCch
Confidence 9999 4455555555556665 79999999999998
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 88 KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 88 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
++++.+..|+..+.......+.|+++|+||+|+.... ..++...++.. .+++++++||+++.|++++|++|.+.+.
T Consensus 178 ~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 178 RNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-HHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 9999999999888765333578999999999986522 12566777776 4789999999999999999999988764
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.1e-27 Score=162.37 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=115.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+.++|+++|.+|||||||++++.+..+...+.++.. +........++.. +.+|||||++++...+..++..+|++++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 468999999999999999999998886655444333 3333345566655 6789999999988888888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH-------cC--CCEEEeccCCCCC
Q psy11135 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ-------FN--IPFIKTSAKTRMG 151 (191)
Q Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~ 151 (191)
|||+++....... ..+..+. ..+.|+++|+||+|+... ..++....... ++ ++++++||++|.|
T Consensus 85 v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (178)
T 2lkc_A 85 VVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA--NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157 (178)
T ss_dssp EEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS--CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred EEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC--CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence 9999884322222 1222222 246899999999999752 22333332222 22 5799999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy11135 152 VDDAFYTLVREIKKDKM 168 (191)
Q Consensus 152 v~~l~~~i~~~~~~~~~ 168 (191)
++++|++|.+.+...+.
T Consensus 158 v~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 158 LDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhhcc
Confidence 99999999998876544
No 110
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=7e-28 Score=164.75 Aligned_cols=157 Identities=17% Similarity=0.275 Sum_probs=117.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH------HHHHhhcc
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS------AMRDQYMR 73 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~ 73 (191)
|+.++|+++|++|||||||++++.+...... .++++.+........++ ..+.+|||||+..+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 6789999999999999999999998763322 32223333444445555 458899999987653 44555554
Q ss_pred --cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 74 --TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 74 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
.++++++++|.++ ++....|+..+.. .+.|+++|+||+|+.. ..+. ++..++++.++++++++|++++.
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 4899999999876 3445566665554 3689999999999865 2222 45678888899999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy11135 151 GVDDAFYTLVREIKKDK 167 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~ 167 (191)
|++++|++|.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887654
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=3.2e-27 Score=157.48 Aligned_cols=149 Identities=21% Similarity=0.208 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh-------HHHHHHhhccc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE-------YSAMRDQYMRT 74 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 74 (191)
.||+++|++|+|||||++++.+... .....+++.+........++.. +.+|||||+.. +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR--FLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE--EEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce--EEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 5899999999999999999998874 3344444444455555566654 78999999886 45566778899
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCCCCHH
Q psy11135 75 GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTRMGVD 153 (191)
Q Consensus 75 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~ 153 (191)
+|++++++|++++.+.. ..++...... .+.|+++|+||+|+... .++..+++ .+++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~---~~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH---ELYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG---GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc---hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence 99999999999854322 2222222221 36899999999998753 23444555 6777 89999999999999
Q ss_pred HHHHHHHHHH
Q psy11135 154 DAFYTLVREI 163 (191)
Q Consensus 154 ~l~~~i~~~~ 163 (191)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998764
No 112
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=3.6e-27 Score=168.59 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=115.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH------HHHhhc-
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA------MRDQYM- 72 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~- 72 (191)
++.++|+++|++|||||||++++.+..+. ..+++++.......+...+ ..+.+|||||+..+.. ....++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35799999999999999999999987743 3333344343344444444 4589999999875532 334444
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 73 -RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
..+|++++|+|+++.++.. .|...+.. .+.|+++|+||+|+.. ..+. .+...+++.++++++++||++|.
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 5899999999999976533 35555544 2689999999999865 2222 34678889999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVREIK 164 (191)
Q Consensus 151 ~v~~l~~~i~~~~~ 164 (191)
|+++++++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 113
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.3e-26 Score=159.32 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=104.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceE-EEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETALLDILDTAG----------QEEYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~ 71 (191)
.++|+++|.+|+|||||++++.+..+.....++.+... ......++ .+.+||||| ++.+...+..+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 58999999999999999999998874443333333221 12222333 378999999 77788888888
Q ss_pred cccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHH----HcCCCEEEe
Q psy11135 72 MRTG---EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAE----QFNIPFIKT 144 (191)
Q Consensus 72 ~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 144 (191)
+..+ |++++|+|+++..+..... ++..+.. .+.|+++|+||+|+...........++.+ ..+++++++
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF 174 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence 7777 9999999999876655432 2222222 46899999999999763322222223322 345789999
Q ss_pred ccCCCCCHHHHHHHHHHHHH
Q psy11135 145 SAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~~~ 164 (191)
||+++.|+++++++|.+.+.
T Consensus 175 Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 175 SSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred EccCCCCHHHHHHHHHHHhc
Confidence 99999999999999988764
No 114
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.95 E-value=6.6e-28 Score=173.94 Aligned_cols=156 Identities=13% Similarity=0.193 Sum_probs=115.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH----------HHHH
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS----------AMRD 69 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~ 69 (191)
|+.++|+++|.+|||||||+|++.+.... ...++++.+.....+..++.. +.+|||||+.++. ....
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHH
Confidence 78999999999999999999999988743 333344444445555555554 7889999977644 2233
Q ss_pred hhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccC
Q psy11135 70 QYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAK 147 (191)
Q Consensus 70 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 147 (191)
.++ ..+|++++|+|+++.+....+ ...+... +.|+++|+||+|+............+++.++++++++||+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYL---TLQLLEL----GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH----TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCG
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc----CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcC
Confidence 333 689999999999986654433 3333332 6899999999998652222233567888899999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy11135 148 TRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 148 ~~~~v~~l~~~i~~~~~~ 165 (191)
+|.|+++++++|.+.+..
T Consensus 152 ~g~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKAN 169 (274)
T ss_dssp GGHHHHHHHHHHHTCCCC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999877653
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=4.4e-28 Score=176.35 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=120.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---CccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH---HHHhhcccCCEE
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVD---EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA---MRDQYMRTGEGF 78 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~ 78 (191)
||+++|..|||||||++++.+..... ...+|.+..+.. ++ ..+.+++|||+|++++.. .+..++++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999887654432 234555543332 22 346799999999999863 468889999999
Q ss_pred EEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC--------ccCHHHHHHHHHH----cCCCEEEe
Q psy11135 79 LLVFAVNSM--KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW--------AVDMNQAQELAEQ----FNIPFIKT 144 (191)
Q Consensus 79 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------~~~~~~~~~~~~~----~~~~~~~~ 144 (191)
++|||+++. ++...+..|+..+... .++.|+++++||+|+... .+..++++++++. ++++|+++
T Consensus 77 IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 77 VYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 999999997 3333333444444332 357999999999999763 3455566777775 67899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhhhhhhhhh
Q psy11135 145 SAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174 (191)
Q Consensus 145 s~~~~~~v~~l~~~i~~~~~~~~~~~~~~~ 174 (191)
||++ .++.++|..+++.+.+.....++.-
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~~le~~L 183 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELSFLENML 183 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHHHHHHHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9998 5899999999998887665554444
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=1.5e-27 Score=161.04 Aligned_cols=154 Identities=25% Similarity=0.311 Sum_probs=112.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----HH--H--HHhh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----SA--M--RDQY 71 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~--~--~~~~ 71 (191)
+.++|+++|.+|||||||++++.+... ...+.+++.+.....+.+++.. +.+|||||+.+. .. . ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 468999999999999999999998763 3445555555556666677655 789999997542 11 1 2245
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 151 (191)
++.+|++++|||+++..++. ...|+..+.... ..+.|+++|+||+|+..... .+++..+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARL-PAKLPITVVRNKADITGETL------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHS-CTTCCEEEEEECHHHHCCCC------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhc-ccCCCEEEEEECccCCcchh------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999987765 346666665532 34689999999999854211 11223467899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11135 152 VDDAFYTLVREIKK 165 (191)
Q Consensus 152 v~~l~~~i~~~~~~ 165 (191)
++++|++|.+.+..
T Consensus 153 v~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 153 VDVLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887643
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=4e-26 Score=167.15 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=125.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----------HHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----------YSAMRDQ 70 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 70 (191)
.-.|+++|.+|||||||+|+|.+..+. .....++..........+ ....+.+|||||+.+ +......
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 457999999999999999999998854 344445444444444444 134588999999843 3356677
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC-CCccCHHHHHHHHHHcC--CCEEEeccC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS-TWAVDMNQAQELAEQFN--IPFIKTSAK 147 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~--~~~~~~s~~ 147 (191)
++..+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+. ......+....+.+.++ .+++++||+
T Consensus 89 ~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~ 164 (308)
T 3iev_A 89 SLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL 164 (308)
T ss_dssp HHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred HhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 78899999999999998877777666666654 368999999999998 55666777788888876 789999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy11135 148 TRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 148 ~~~~v~~l~~~i~~~~~~~ 166 (191)
+|.|++++++.|.+.+.+.
T Consensus 165 ~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 165 KGANLDELVKTILKYLPEG 183 (308)
T ss_dssp TTBSHHHHHHHHHHHSCBC
T ss_pred CCCCHHHHHHHHHHhCccC
Confidence 9999999999999988653
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.94 E-value=2.1e-27 Score=169.50 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=113.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH----------HHHhhc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA----------MRDQYM 72 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 72 (191)
.+|+++|.+|||||||+|++.+... ....++++.+.....+..++. .+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 3799999999999999999998863 334444444555555666666 488999999875542 455566
Q ss_pred --ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 73 --RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 73 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
..+|++++|+|+++.++...+.. .+.. .+.|+++|+||+|+............+++.++++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence 88999999999999665443333 2332 36899999999998653222233566888899999999999999
Q ss_pred CHHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVRE 162 (191)
Q Consensus 151 ~v~~l~~~i~~~ 162 (191)
|+++++++|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999999775
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=6.4e-26 Score=155.66 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=107.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 72 (191)
.++|+++|.+|+|||||++++.+..... ..++.+..........+.. +.+||||| ++.+...+..++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNSK--YYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETTT--EEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECCc--EEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4799999999999999999999887322 2222222222222222333 67899999 667777777777
Q ss_pred ccC---CEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHHcC-CCEEEec
Q psy11135 73 RTG---EGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQFN-IPFIKTS 145 (191)
Q Consensus 73 ~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~-~~~~~~s 145 (191)
..+ +++++++|.++..+.... .+...+.. .+.|+++|+||+|+.... ...++...++...+ ++++++|
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred hcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 766 999999999875432222 11222222 268999999999987522 23344555566544 7999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy11135 146 AKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~ 165 (191)
|+++.|++++|++|.+.+.+
T Consensus 175 a~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 175 SVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCCCHHHHHHHHHHHhhc
Confidence 99999999999999988754
No 120
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=9.9e-27 Score=182.06 Aligned_cols=162 Identities=20% Similarity=0.273 Sum_probs=120.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEE---------EEcCeEEEEEEEeCCChhhHHHHHHhh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV---------VIDGETALLDILDTAGQEEYSAMRDQY 71 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~D~~g~~~~~~~~~~~ 71 (191)
++++||+++|.+|||||||++++.+..+...+.++.+..+.... ..++..+.+.+||+||++.+...+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 35799999999999999999999998877777777665444321 112335679999999999999888889
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
++.++++++|||+++.+ .+..|+..+..+. ++.|+++|+||+|+.. ..+..++...++...+++++++||++|.
T Consensus 119 l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~ 193 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTDS---NKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193 (535)
T ss_dssp HHSSEEEEEEECGGGGG---GHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred ccCCcEEEEEEeCCCch---hHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence 99999999999998764 4567777777653 3689999999999976 5567788888888999999999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy11135 151 GVDDAFYTLVREIKKDK 167 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~ 167 (191)
|+++++++|.+.+.+..
T Consensus 194 gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 194 GVESIAKSLKSAVLHPD 210 (535)
T ss_dssp -CTTHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999886543
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.1e-26 Score=166.92 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH------HHHHhhcc--
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS------AMRDQYMR-- 73 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 73 (191)
.++|+++|++|||||||++++.+.. ....+++++.+.... .++. ...+.+|||||+..+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~--~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSG--LVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEE--ECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEE--EEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 5799999999999999999999876 444554444333222 3343 4458899999987654 45555554
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
.+|++++|+|+++.++. ..|...+.. .+.|+++|+||+|+.. ..+. .+...+++.++++++++||++|.|+
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345555544 3689999999999864 2233 4567788889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy11135 153 DDAFYTLVREIK 164 (191)
Q Consensus 153 ~~l~~~i~~~~~ 164 (191)
+++|++|.+.+.
T Consensus 152 ~el~~~i~~~~~ 163 (272)
T 3b1v_A 152 DQVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHHSCT
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 122
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=2.4e-26 Score=165.69 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=116.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCCccceEEEEEEEcCeEEEEEEEeCCChhhHHH------HHHhhc-
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYRKQVVIDGETALLDILDTAGQEEYSA------MRDQYM- 72 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~- 72 (191)
|+.++|+++|++|||||||++++.+..+.... ++.+.+........++.. +.+|||||+..+.. ....++
T Consensus 1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhh
Confidence 78899999999999999999999988753333 333334444445556655 88999999776543 444554
Q ss_pred -ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135 73 -RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151 (191)
Q Consensus 73 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 151 (191)
..+|++++|+|.++.+ ....++..+... ...|+++|+||+|+............+++.++++++++|+++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCC
Confidence 6899999999998864 233444444442 138999999999975422111236778888999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11135 152 VDDAFYTLVREIKK 165 (191)
Q Consensus 152 v~~l~~~i~~~~~~ 165 (191)
++++++.+.+.+..
T Consensus 153 i~~l~~~i~~~~~~ 166 (271)
T 3k53_A 153 VEELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=5.5e-25 Score=168.93 Aligned_cols=155 Identities=21% Similarity=0.207 Sum_probs=98.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH--------Hhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR--------DQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 72 (191)
.++|+++|.+|+|||||+|+|.+.. ......+++.+.......+++.. +.+|||||+.++.... ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 5899999999999999999999876 45566666666666666677655 8899999987765433 3367
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..+|++++|+|++++.++..+..+...+.. .. +.|+++|+||+|+...... ..+.+.+....+++++||++|.|+
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~--~~piIvV~NK~Dl~~~~~~--~~~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAA-HP--AAKFLTVANKLDRAANADA--LIRAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CT--TSEEEEEEECTTSCTTTHH--HHHHHHHHHTSCEEECBTTTTBSH
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cC--CCCEEEEEECcCCCCccch--hHHHHHhcCCCceEEEEECCCCCH
Confidence 889999999999998776543333322222 22 6899999999999763321 223454443478999999999999
Q ss_pred HHHHHHHHHHHH
Q psy11135 153 DDAFYTLVREIK 164 (191)
Q Consensus 153 ~~l~~~i~~~~~ 164 (191)
++++++|.+.+.
T Consensus 386 ~eL~~~i~~~~~ 397 (476)
T 3gee_A 386 DTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHTHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999886
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=4.5e-25 Score=154.69 Aligned_cols=159 Identities=17% Similarity=0.205 Sum_probs=105.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC---CCCCccCCccceEEEEEEEc-CeEEEEEEEeCCC----------hhhHHHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVID-GETALLDILDTAG----------QEEYSAMR 68 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~~~ 68 (191)
.++|+|+|.+|+|||||++++.+.. ......+++..... .... .....+.+||||| ++.+....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY--FSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEE--EEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEE--EEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 5799999999999999999999886 23333333332222 2232 3334588999999 45556666
Q ss_pred Hhhccc---CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC---HHHHH-HHHHH-----
Q psy11135 69 DQYMRT---GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD---MNQAQ-ELAEQ----- 136 (191)
Q Consensus 69 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~-~~~~~----- 136 (191)
..++.. +|++++++|.++..+.. ...++..+.. .+.|+++|+||+|+...... .+... .+...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 666665 78899999998753321 2233333333 46899999999998762221 11122 22222
Q ss_pred -cCCCEEEeccCCCCCHHHHHHHHHHHHHhhhh
Q psy11135 137 -FNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 137 -~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~~ 168 (191)
.+++++++||+++.|+++++++|.+.+.+...
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 45789999999999999999999998876543
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=9e-25 Score=159.25 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=110.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhh--------HHHHHHhh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE--------YSAMRDQY 71 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 71 (191)
+..+|+++|.+|||||||+|++++..+. +..+.++..........+ ...+.+|||||..+ +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4678999999999999999999988853 333344444433333333 34588999999765 55666778
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHc-C-CCEEEeccCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYR-EQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF-N-IPFIKTSAKT 148 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~-~~~~~~s~~~ 148 (191)
++.+|++++|+|+++..+.. ..|+ ..+... ..+.|+++|+||+|+..... ........+ + .+++++||++
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPE---EAMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHH---HHHHHHHHTSTTSEEEECCTTC
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchH---HHHHHHHHhcCcCcEEEEeCCC
Confidence 99999999999998864432 3443 334332 24689999999999875322 022333332 3 4689999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy11135 149 RMGVDDAFYTLVREIKK 165 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~ 165 (191)
|.|++++++.|...+.+
T Consensus 157 g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 157 ERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999887654
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=1.6e-24 Score=165.70 Aligned_cols=157 Identities=20% Similarity=0.252 Sum_probs=113.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCCh----------hhHHHHHH-
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ----------EEYSAMRD- 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~- 69 (191)
.++|+++|.+|||||||+|++++... .....+++.+.....+..++.. +.+|||||+ +.+.....
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 252 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRAL 252 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHH
Confidence 48999999999999999999998874 4555566666555666677766 789999998 55555444
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHH-HHHHHH----cCCCEEE
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQA-QELAEQ----FNIPFIK 143 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~-~~~~~~----~~~~~~~ 143 (191)
.+++.+|++++|+|+++..+.... .|+..+.. .+.|+++|+||+|+.... ...++. ..+.+. .++++++
T Consensus 253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 327 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 327 (436)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 468889999999999997776654 45544443 468999999999997633 222332 233333 3679999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhh
Q psy11135 144 TSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
+||++|.|++++|+.+.+.+...
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999887653
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.4e-23 Score=156.70 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=118.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCCccceEEEEEEEcCeEEEEEEEeCCChhhH---------HHHHHhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-EYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY---------SAMRDQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 72 (191)
.++|+++|.+|||||||++++.+..... ....++..........++ ..+.+|||||.... ........
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4789999999999999999999876422 223333333233333333 44889999997431 12223445
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCC
Q psy11135 73 RTGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRM 150 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 150 (191)
..+|++++|+|+++.. ++.....|+..+..... +.|+++|+||+|+.... ..++...++...+++++++||++|+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~iSA~~g~ 321 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEE-NIKRLEKFVKEKGLNPIKISALKGT 321 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHH-HHHHHHHHHHHTTCCCEECBTTTTB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChH-HHHHHHHHHHhcCCCeEEEeCCCCc
Confidence 5799999999998876 67777788877766432 78999999999987522 1244556667788999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy11135 151 GVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~~~ 169 (191)
|+++++++|.+.+......
T Consensus 322 gi~~l~~~i~~~l~~~~~~ 340 (357)
T 2e87_A 322 GIDLVKEEIIKTLRPLAEK 340 (357)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh
Confidence 9999999999998765443
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=2.8e-24 Score=165.22 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCC----------hhhHHHHHH-
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAG----------QEEYSAMRD- 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 69 (191)
.++|+++|.+|+|||||++++.+.. ......+++.+.....+..++.. +.+||||| ++.+.....
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 5899999999999999999999775 34555566666555566677764 88999999 677766655
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHc-----CCCEEE
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQF-----NIPFIK 143 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~-----~~~~~~ 143 (191)
.+++.+|++++|+|+++...- ....|+..+.. .+.|+++|+||+|+.. .....++..+.++.. ++++++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF 347 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred HHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence 368899999999999885432 22334433333 4689999999999986 444556665555544 579999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 144 TSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 144 ~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
+||++|.|++++|+++.+.+....
T Consensus 348 ~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 348 MSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EcCCCCcCHHHHHHHHHHHHHHhc
Confidence 999999999999999998886543
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=2.3e-25 Score=155.69 Aligned_cols=142 Identities=14% Similarity=0.224 Sum_probs=103.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhccc----
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT---- 74 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---- 74 (191)
+.++|+++|++|+|||||++++.+..+... +.++.... .....+.+|||||++.+...+..++..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD--------YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT--------GGGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE--------eeCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 368999999999999999999998875432 22222211 133458899999999998888888777
Q ss_pred CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCCCCCcc-C------HHHHHHHHHHcCCCEEE
Q psy11135 75 GEGFLLVFAVN-SMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDLSTWAV-D------MNQAQELAEQFNIPFIK 143 (191)
Q Consensus 75 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~-~------~~~~~~~~~~~~~~~~~ 143 (191)
++++++|||++ +++++..+..|+..+.... ...+.|+++|+||+|+..... . .+++..++...++++++
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 162 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNE 162 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 89999999999 8888888888888776543 235789999999999976332 2 34566777777888999
Q ss_pred eccCCCCC
Q psy11135 144 TSAKTRMG 151 (191)
Q Consensus 144 ~s~~~~~~ 151 (191)
+|++++.+
T Consensus 163 ~Sa~~~~~ 170 (218)
T 1nrj_B 163 VERKINEE 170 (218)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99998765
No 130
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=2.1e-24 Score=159.42 Aligned_cols=159 Identities=19% Similarity=0.285 Sum_probs=118.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHHHHhh---cccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAMRDQY---MRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~~ 76 (191)
+|+++|.+|||||||++++++... ...+..++.......+.+++. ..+.+|||||..+ +..+...+ +..++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 588999999999999999987653 234443443333333445441 2488999999654 22233333 44599
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCCC
Q psy11135 77 GFLLVFAVNS---MKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRM 150 (191)
Q Consensus 77 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~ 150 (191)
++++|+|+++ .+++..+..|...+..+.. ..+.|+++|+||+|+.. ..+...++++.+. .+++++||+++.
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~---~~e~~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE---AAENLEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT---HHHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC---CHHHHHHHHHHhhcCCCEEEEECCCCc
Confidence 9999999998 7788888888888877542 35789999999999875 2245667777776 789999999999
Q ss_pred CHHHHHHHHHHHHHhhh
Q psy11135 151 GVDDAFYTLVREIKKDK 167 (191)
Q Consensus 151 ~v~~l~~~i~~~~~~~~ 167 (191)
|+++++++|.+.+.+.+
T Consensus 316 gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 316 GLRELLFEVANQLENTP 332 (342)
T ss_dssp TTHHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHhhCc
Confidence 99999999999886543
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=5.6e-24 Score=163.49 Aligned_cols=152 Identities=26% Similarity=0.317 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChh-hHH--------HHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-EYS--------AMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~ 71 (191)
.++|+++|.+|+|||||+|++.+.+ ...++++++.+.....+.+++.. +.+|||||.. ++. .....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3899999999999999999999875 46677777777766777777665 7899999987 443 233456
Q ss_pred cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCC
Q psy11135 72 MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMG 151 (191)
Q Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 151 (191)
+..+|++++|+|++++.++.... ++..+ .+.|+++|+||+|+... +..++...+. ..+++++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~-~~~~~~~~~~-~~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK-INEEEIKNKL-GTDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC-CCHHHHHHHH-TCSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc-cCHHHHHHHh-cCCCcEEEEECCCCCC
Confidence 88999999999999887765432 22222 36799999999999753 4445544443 2447899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy11135 152 VDDAFYTLVREIKK 165 (191)
Q Consensus 152 v~~l~~~i~~~~~~ 165 (191)
+++++++|.+.+..
T Consensus 392 i~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 392 LEKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987653
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=1.8e-23 Score=159.96 Aligned_cols=152 Identities=22% Similarity=0.320 Sum_probs=105.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhh---------HHHHHHhhcc
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEE---------YSAMRDQYMR 73 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~ 73 (191)
+|+++|.+|||||||+|++.+.. ...+.++++.+.......+++.. +.+|||||++. +......+++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHH
Confidence 78999999999999999999876 34566666666666667777776 78899999653 3456677899
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH-HHHHHHcCC-CEEEeccCCCCC
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA-QELAEQFNI-PFIKTSAKTRMG 151 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~ 151 (191)
.+|++++|+|+++..+... .++..+... .+.|+++|+||+|+... . ..+. .++. .+++ +++++||++|.|
T Consensus 81 ~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~-~-~~~~~~~~~-~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLRE-F-EREVKPELY-SLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp TCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHH-H-HHHTHHHHG-GGSSCSCEECBTTTTBS
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCccc-c-HHHHHHHHH-hcCCCCEEEEeccCCCC
Confidence 9999999999987544321 222222221 25799999999997531 1 1222 3443 4666 799999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy11135 152 VDDAFYTLVREIKKD 166 (191)
Q Consensus 152 v~~l~~~i~~~~~~~ 166 (191)
++++++++.+.+.+.
T Consensus 153 v~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 153 LDTMLETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999988653
No 133
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=4.5e-24 Score=158.20 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=99.7
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (191)
.+.+++||++|++.++..|..++++++++|+|||+++ ..++.....|+..+.......+.|+++|+||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4568999999999999999999999999999999999 467888888888887644446799999999999
Q ss_pred CCCC----------------ccCHHHHHHHHH-----------HcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 120 LSTW----------------AVDMNQAQELAE-----------QFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 120 ~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
+... .++.+++..++. ..++.++++||+++.|++++|+++.+.+....
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 8531 256778888776 35678999999999999999999999887543
No 134
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=6e-25 Score=168.02 Aligned_cols=154 Identities=16% Similarity=0.193 Sum_probs=100.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChh--------hHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE--------EYSAMRDQ 70 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 70 (191)
|...+|+++|.+|||||||+|+|.+... ..+.++++.+.......+++. .+.+|||||+. .+......
T Consensus 1 m~~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 1 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY--DFNLIDTGGIDIGDEPFLAQIRQQAEI 78 (436)
T ss_dssp --CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS--CCEEEC---------CHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc--eEEEEECCCCCCcchhHHHHHHHHHHH
Confidence 5557999999999999999999998764 344444444444443334444 48899999985 56667778
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTR 149 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 149 (191)
+++.+|++++|+|+.+..+.. ..++..+. ...+.|+++|+||+|+..... +..++. .++. +++++||.+|
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~--d~~~~~~l---~~~~~pvilv~NK~D~~~~~~---~~~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAA--DEEVAKIL---YRTKKPVVLAVNKLDNTEMRA---NIYDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHH--HHHHHHHH---TTCCSCEEEEEECCCC--------CCCSSG-GGSSCCCEECBTTTT
T ss_pred HHHhCCEEEEEEeCCCCCCHH--HHHHHHHH---HHcCCCEEEEEECccCccchh---hHHHHH-HcCCCCeEEEeCcCC
Confidence 899999999999998865533 23333322 235789999999999865221 111222 3455 7899999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy11135 150 MGVDDAFYTLVREIKK 165 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~ 165 (191)
.|++++++++.+.+.+
T Consensus 150 ~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKN 165 (436)
T ss_dssp BTHHHHHHHHHHTGGG
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999988764
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=7.9e-23 Score=154.88 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=111.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--cCCc---------cceEEEEE-----E---EcCeEEEEEEEeCCChh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--DPTI---------EDSYRKQV-----V---IDGETALLDILDTAGQE 62 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--~~~~---------~~~~~~~~-----~---~~~~~~~~~~~D~~g~~ 62 (191)
+.++|+++|++|+|||||+++|.+....... ..++ ...+.... . .......+.+|||||++
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 5789999999999999999999875432110 0000 00000000 0 01122568999999999
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH---c--
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ---F-- 137 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~-- 137 (191)
++......++..+|++++++|+++..+......++..+.... ..|+++|+||+|+.......+...++.+. .
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999998765666666666554431 24899999999987632211222223222 2
Q ss_pred -CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 138 -NIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 138 -~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
+++++++||++|.|+++++++|.+.+..
T Consensus 164 ~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 164 ENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 5789999999999999999999987754
No 136
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=1.9e-24 Score=163.48 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=113.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH-------HHhhcc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM-------RDQYMR 73 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~~ 73 (191)
.++|+++|..|+|||||++++.+..+ .....+++.+.........+.. .+.+|||||+.++... ...++.
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 57999999999999999999998774 3444455555555555555542 5889999998765432 455788
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHH
Q psy11135 74 TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVD 153 (191)
Q Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~ 153 (191)
.+|++++|+|++..+ ....|+..+... +.|+++|+||+|+...... +...++++.++++++++||++|.|++
T Consensus 113 ~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~ 184 (423)
T 3qq5_A 113 RADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKKGFD 184 (423)
T ss_dssp SCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTT
T ss_pred cCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 999999999994433 335566655553 6899999999999874433 66677777889999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy11135 154 DAFYTLVREIKKD 166 (191)
Q Consensus 154 ~l~~~i~~~~~~~ 166 (191)
++|++|.+.+.+.
T Consensus 185 eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 185 DIGKTISEILPGD 197 (423)
T ss_dssp THHHHHHHHSCCC
T ss_pred HHHHHHHHhhhhh
Confidence 9999999988543
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=2.6e-22 Score=154.78 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=109.5
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCC----C---CCCccC-CccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhc
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNH----F---VDEYDP-TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYM 72 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~----~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 72 (191)
|+.++|+++|+.++|||||+++|.+.. . ..+..+ .+.+.....+.+++ ..+.+|||||++++.......+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 678999999999999999999999766 1 111111 11111111233444 4588999999999988888889
Q ss_pred ccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHHc----CCCEE
Q psy11135 73 RTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQF----NIPFI 142 (191)
Q Consensus 73 ~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~----~~~~~ 142 (191)
..+|++++|+|+++ +.+.+.+. .+.. .+.|.++|+||+|+.... ...++..++.+.. +++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii 166 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII 166 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence 99999999999988 44433332 2222 257889999999997521 1223344555555 57899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
++||++|.|+++++++|.+.+..
T Consensus 167 ~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 167 PISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHhhcC
Confidence 99999999999999999998763
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.89 E-value=7.5e-22 Score=139.78 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=107.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC---CccceEEEEEEEcCeEEEEEEEeCCCh-----------hhHHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP---TIEDSYRKQVVIDGETALLDILDTAGQ-----------EEYSAM 67 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~ 67 (191)
..++|+++|.+|+|||||++++++........+ ++..........++.. +.+|||||. ..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999886444332 3334444445566655 789999993 344455
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCCcEEEEEecCCCCCCc-cC------HHHHHHHHHHcCC
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLSTWA-VD------MNQAQELAEQFNI 139 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~-~~------~~~~~~~~~~~~~ 139 (191)
....+..+|++++|+|+++.... ...++..+.... .....|+++|+||+|+.... +. .+.++.+.+.++.
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 55666788999999999764431 122232222111 11235999999999986522 11 2457788889999
Q ss_pred CEEEeccCCC-----CCHHHHHHHHHHHHHh
Q psy11135 140 PFIKTSAKTR-----MGVDDAFYTLVREIKK 165 (191)
Q Consensus 140 ~~~~~s~~~~-----~~v~~l~~~i~~~~~~ 165 (191)
.++.++...+ .++.+++..+...+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 184 RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 9988887644 6889999888877754
No 139
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.89 E-value=2.8e-24 Score=159.23 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=94.3
Q ss_pred eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135 49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN----------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (191)
..+.+++|||+|+++++..+..++++++++++|||++ +..++.....|+..+.......+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5678999999999999999999999999999999998 778899999999888764444678999999999
Q ss_pred CCCCCc---c-------------------CHHHHHHHHHH----------------cCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 119 DLSTWA---V-------------------DMNQAQELAEQ----------------FNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 119 D~~~~~---~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|+.... + +.+++..++.. ..+.++++||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 984311 1 13556666332 123568999999999999999999
Q ss_pred HHHHhhh
Q psy11135 161 REIKKDK 167 (191)
Q Consensus 161 ~~~~~~~ 167 (191)
+.+....
T Consensus 341 ~~I~~~~ 347 (354)
T 2xtz_A 341 ETLRRRN 347 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886544
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=6.2e-23 Score=149.74 Aligned_cols=156 Identities=21% Similarity=0.151 Sum_probs=108.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChh-hHHH--------HHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQE-EYSA--------MRDQ 70 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~ 70 (191)
+..+|+++|++|+|||||++++.+..+. .....++..........++ ..+.+|||||+. .... ....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4568999999999999999999988742 3333344433333333343 458899999987 3322 2235
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCC-CEEEeccCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNI-PFIKTSAKT 148 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~-~~~~~s~~~ 148 (191)
.+..+|++++++|.++ +.....++..... ..+.|.++|+||+|+.. .....+...++++.++. .++++||++
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 5678999999999977 2223333322222 24689999999999875 22233445566666675 699999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy11135 149 RMGVDDAFYTLVREIKK 165 (191)
Q Consensus 149 ~~~v~~l~~~i~~~~~~ 165 (191)
+.|++++++.|...+.+
T Consensus 159 g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp TTTHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHHhCCc
Confidence 99999999999876654
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.89 E-value=2.1e-22 Score=144.29 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=107.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccC--CccceEEEEEEEcCeEEEEEEEeCCChhhH-----------HHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH-FVDEYDP--TIEDSYRKQVVIDGETALLDILDTAGQEEY-----------SAM 67 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~ 67 (191)
+.++|+|+|.+|||||||++++++.. +.....+ ++..........++.. +.+|||||+... ...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999877 4444333 3334444444555554 889999997643 223
Q ss_pred HHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEe-cCCCCCCccCH-------HHHHHHHHHcC
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGN-KCDLSTWAVDM-------NQAQELAEQFN 138 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~-------~~~~~~~~~~~ 138 (191)
...++..+|++++|+|+++.... ..+..++..... .....|.++|+| |+|+....+.. .++..+.+.++
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG--EDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC--chhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence 33467889999999999863221 122233332221 111356676676 99997543222 33445666666
Q ss_pred CCE-----EEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 139 IPF-----IKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 139 ~~~-----~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
..+ +++||+++.|++++|+.|.+.+....
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 432 78999999999999999999887643
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.89 E-value=9.1e-23 Score=149.20 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=98.0
Q ss_pred eEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135 49 ETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN----------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118 (191)
Q Consensus 49 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (191)
..+.+++||++|+++++..|..++++++++++|||++ +..++.+...|+..+.......+.|+++++||+
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence 3466899999999999999999999999999999665 566777777888877665445679999999999
Q ss_pred CCCCC-----------------ccCHHHHHHHH----------HHcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 119 DLSTW-----------------AVDMNQAQELA----------EQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 119 D~~~~-----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
|+... ..+.+++..+. ...++.++++||+++.||+.+|+++.+.+.+..
T Consensus 245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 98541 35777777773 345577899999999999999999999988754
No 143
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2.9e-23 Score=158.92 Aligned_cols=152 Identities=27% Similarity=0.309 Sum_probs=103.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHH--------Hhhc
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMR--------DQYM 72 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 72 (191)
.++|+++|++|+|||||+|+|.+.. ......+++.+.......+++.. +.+|||||+.+..... ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence 5799999999999999999999865 35555666665555556677765 7899999986654332 2357
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
..+|++++|+|.+++.+... ..++..+. ..|+++|+||+|+....... ....+. .+.+++++|+++|.|+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~~~~-~~~~~~--~~~~~i~iSAktg~Gi 371 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQLIT-SLEYPE--NITQIVHTAAAQKQGI 371 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGGGST-TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcchhhH-HHHHhc--cCCcEEEEECCCCCCH
Confidence 88999999999998765443 33333332 36999999999997622111 111111 3568999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy11135 153 DDAFYTLVREIKKD 166 (191)
Q Consensus 153 ~~l~~~i~~~~~~~ 166 (191)
++++++|.+.+...
T Consensus 372 ~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 372 DSLETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=1.4e-21 Score=145.67 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=108.0
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCCh---------hhHHHHHHhhc
Q psy11135 4 YK-LVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ---------EEYSAMRDQYM 72 (191)
Q Consensus 4 ~~-i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~ 72 (191)
++ |+++|++|+|||||+|++.+... ..+...++.+.....+.+++.. +.+|||+|. +.+...+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 45 89999999999999999998774 2344444445555566777754 789999996 22333433 47
Q ss_pred ccCCEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHHHc---CCCEEEec
Q psy11135 73 RTGEGFLLVFAVNSMK--SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAEQF---NIPFIKTS 145 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---~~~~~~~s 145 (191)
..+|++++++|++++. ....+..+...+.. ....+.|+++|+||+|+...... .+.+..+++.+ +.+++++|
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 8899999999998876 44445445444443 23356899999999998753311 11233344555 24689999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy11135 146 AKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 146 ~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++++.|++++++.|.+.+...
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhccc
Confidence 999999999999998877654
No 145
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=6e-22 Score=151.60 Aligned_cols=157 Identities=22% Similarity=0.231 Sum_probs=106.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHH------------H
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAM------------R 68 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~ 68 (191)
.++|+++|++|||||||++++.+... .....+++.+.....+.+++.. +.+|||||..+.... .
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~~ 257 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYRV 257 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHHH
Confidence 47999999999999999999998764 4555566655555666778775 788999997543221 1
Q ss_pred HhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cCHHHHH-HHHHH----cCCCEE
Q psy11135 69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VDMNQAQ-ELAEQ----FNIPFI 142 (191)
Q Consensus 69 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~-~~~~~----~~~~~~ 142 (191)
..++..+|++++++|+++..+.... .+...+. ..+.|+++|+||+|+.... ...++.. .+... .+++++
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 2456779999999999876554332 2222222 2468999999999987632 3333332 23333 357899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 143 KTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 143 ~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++||++|.|++++|+.+.+.+...
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999877653
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=1.2e-21 Score=139.23 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=106.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccC--CccceEEEEEEEcCeEEEEEEEeCCChh--------hHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDE-YDP--TIEDSYRKQVVIDGETALLDILDTAGQE--------EYSAMRDQ 70 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 70 (191)
++++|+++|.+|||||||+|++++...... ..+ ++..........++.. +.+|||||.. ++......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH--VEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE--EEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE--EEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 579999999999999999999998885332 222 3333444445556555 7899999962 22222222
Q ss_pred h----cccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC-------HHHHHHHHHHcC
Q psy11135 71 Y----MRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD-------MNQAQELAEQFN 138 (191)
Q Consensus 71 ~----~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~ 138 (191)
+ ...+|++++|+|+++.... ..+..++..+.. ....+.|+++++||.|+...... .+..+.+.+.++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 2 3899999999999863221 112233333221 11125799999999999763221 134677888889
Q ss_pred CCEEEeccCC-----CCCHHHHHHHHHHHHHh
Q psy11135 139 IPFIKTSAKT-----RMGVDDAFYTLVREIKK 165 (191)
Q Consensus 139 ~~~~~~s~~~-----~~~v~~l~~~i~~~~~~ 165 (191)
..++.+++.. +.+++++++.|.+.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8888877665 57999999999888875
No 147
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=1.9e-22 Score=149.93 Aligned_cols=118 Identities=16% Similarity=0.131 Sum_probs=91.2
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (191)
.+.+.+|||+|++.++..|..++++++++++|||+++ ..++.....|+..+.......+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4568999999999999999999999999999999999 678999889988887644446799999999999
Q ss_pred CCCC-----------------ccCHHHHHHHHH-----------HcCCCEEEeccCCCCCHHHHHHHHHHHHHhhh
Q psy11135 120 LSTW-----------------AVDMNQAQELAE-----------QFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 120 ~~~~-----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~~ 167 (191)
+... .++.+++..++. ..++.++++||+++.|++++|+++.+.+....
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 8531 256677776652 34578899999999999999999999887544
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=5.1e-21 Score=145.19 Aligned_cols=157 Identities=23% Similarity=0.229 Sum_probs=101.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC---CCCCccC--CccceEEEE-EEE-------------c--C----eEEEEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDP--TIEDSYRKQ-VVI-------------D--G----ETALLDIL 56 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~-~~~-------------~--~----~~~~~~~~ 56 (191)
+.++|+++|+.++|||||+++|.+.. +.....+ |....+... ... + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 36899999999999999999998543 2222222 222222111 110 1 1 12678999
Q ss_pred eCCChhhHHHHHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHH
Q psy11135 57 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQ 129 (191)
Q Consensus 57 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~ 129 (191)
||||++++.......+..+|++++|+|+++. .+.+.+.. +... ...|+++|+||+|+.... ...++
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~ 159 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL---GIDKIIIVQNKIDLVDEKQAEENYEQ 159 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT---TCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc---CCCeEEEEEEccCCCCHHHHHHHHHH
Confidence 9999999988877888889999999999853 34433322 2221 124899999999997633 23345
Q ss_pred HHHHHHHc---CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 130 AQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 130 ~~~~~~~~---~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
..++.+.. +++++++||++|.|+++++++|.+.+..
T Consensus 160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 55665543 5789999999999999999999887654
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=1.5e-21 Score=153.31 Aligned_cols=158 Identities=26% Similarity=0.313 Sum_probs=111.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----CccCC------cc---ceEEEEEEE---cCeEEEEEEEeCCChhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD-----EYDPT------IE---DSYRKQVVI---DGETALLDILDTAGQEE 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-----~~~~~------~~---~~~~~~~~~---~~~~~~~~~~D~~g~~~ 63 (191)
-.+|+++|+.++|||||+++|+... +.. ....+ .+ ........+ ++..+.+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3589999999999999999998632 111 00000 00 000111222 45568899999999999
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---C
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---P 140 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~ 140 (191)
+.......++.+|++++|+|+++..+......|..... .+.|+++|+||+|+.... ..+...++.+.++. +
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIVGIDATD 157 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc-HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666666654443 267999999999997643 33445667777776 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 141 FIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 141 ~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++++||++|.|+++++++|.+.+...
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred EEEeecccCCCchhHHHHHhhcCCCc
Confidence 99999999999999999999887653
No 150
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=2.9e-21 Score=151.43 Aligned_cols=158 Identities=20% Similarity=0.303 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----ccC----------Cccc-eEEEEEEE-cCeEEEEEEEeCCChhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE-----YDP----------TIED-SYRKQVVI-DGETALLDILDTAGQEE 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~-----~~~----------~~~~-~~~~~~~~-~~~~~~~~~~D~~g~~~ 63 (191)
-.+|+++|+.++|||||+++|+... +... ... |... .....+.. ++..+.+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4589999999999999999998532 1110 000 1110 01111111 45568899999999999
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC---C
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI---P 140 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~ 140 (191)
+.......+..+|++++|+|+++..+......|..... .+.|+++|+||+|+.... ..+...++.+.+++ +
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~~~~ 159 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLDPEE 159 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCCGGG
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCCccc
Confidence 99888888999999999999999777666666654443 368999999999997643 23445667777776 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 141 FIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 141 ~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++++||++|.|+++++++|.+.+...
T Consensus 160 vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 160 AILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred EEEEEeecCCCchHHHHHHHHhcccc
Confidence 99999999999999999999888653
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=2.4e-23 Score=160.07 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=100.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCC--------hhhHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAG--------QEEYSAMRDQ 70 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~ 70 (191)
|...+|+++|.+|||||||+|+|.+.... ...++++.+.........+ ..+.+||||| +..+......
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 56679999999999999999999987642 3333444443333332333 3588999999 7778888888
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCC-CEEEeccCCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-PFIKTSAKTR 149 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 149 (191)
++..+|++++|+|..+..+ ....++..+.. ..+.|+++|+||+|+.... ....++. ..+. .++++||.+|
T Consensus 99 ~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~---~~~~pvilV~NK~D~~~~~---~~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVT--AADEEVAKILY---RTKKPVVLAVNKLDNTEMR---ANIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp HHHHCSEEEEEEESSSCSC--HHHHHHHHHHT---TCCSCEEEEEECC------------CCSG-GGSSSSEEECCTTTC
T ss_pred hHhhCCEEEEEEeCCCCCC--hHHHHHHHHHH---HcCCCEEEEEECccchhhh---hhHHHHH-HcCCCceEEeecccc
Confidence 9999999999999876333 22333333332 3578999999999986421 1111121 2333 5789999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy11135 150 MGVDDAFYTLVREIKK 165 (191)
Q Consensus 150 ~~v~~l~~~i~~~~~~ 165 (191)
.|+.++++.+.+.+.+
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999876643
No 152
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.6e-22 Score=145.90 Aligned_cols=157 Identities=19% Similarity=0.242 Sum_probs=87.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCc-------cCCcc-ceEEEEEEEcCeEEEEEEEeCCChh-------hHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEY-------DPTIE-DSYRKQVVIDGETALLDILDTAGQE-------EYSA 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~ 66 (191)
+++|+++|.+|+|||||+|+|++... ...+ .++.. +........++..+.+.+|||||.. .+..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 68999999999999999999987763 3333 23333 2222333335555679999999962 2333
Q ss_pred HH-------Hhhccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135 67 MR-------DQYMRT-------------GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126 (191)
Q Consensus 67 ~~-------~~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 126 (191)
+. ..++.. +|+++++++.+...-...-..++..+.. +.|+++|+||+|+......
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~ 162 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEEC 162 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHH
Confidence 32 223332 6788888876552211111233333322 6899999999998642111
Q ss_pred ---HHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 127 ---MNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 127 ---~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
.+...+.....+++++++|+.++.++++++++|.+.++
T Consensus 163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 12234445567899999999999999999999887654
No 153
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.8e-23 Score=140.49 Aligned_cols=115 Identities=16% Similarity=0.274 Sum_probs=85.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCC---ccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhccc----
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDE---YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT---- 74 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~---- 74 (191)
+.++|+++|++|||||||++++.+..+... ..++.. .+...+.+.+|||||+..+...+..++..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA--------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee--------eeecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 357999999999999999999998875431 111111 11133457899999998776666665554
Q ss_pred CCEEEEEEeCC-ChhhHHHHHHHHHHHHhhc---CCCCCcEEEEEecCCCCCCc
Q psy11135 75 GEGFLLVFAVN-SMKSFEDIGSYREQIKRVK---DAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 75 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~ 124 (191)
+|++++|||++ +.+++..+..|+..+.... ...+.|+++|+||+|+....
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 8999999888887776543 23578999999999997643
No 154
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.87 E-value=1.1e-21 Score=144.05 Aligned_cols=118 Identities=14% Similarity=0.100 Sum_probs=96.0
Q ss_pred CeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcCCCCCcEEEEEec
Q psy11135 48 GETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN----------SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117 (191)
Q Consensus 48 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK 117 (191)
...+.+++||++|+++++..|..++++++++++|||++ +..++.+...|+..+.......+.|+++++||
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence 34466899999999999999999999999999999998 67788888888888876545568999999999
Q ss_pred CCCCCC----------------ccCHHHHHHHH-HHc--------------------------CCCEEEeccCCCCCHHH
Q psy11135 118 CDLSTW----------------AVDMNQAQELA-EQF--------------------------NIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 118 ~D~~~~----------------~~~~~~~~~~~-~~~--------------------------~~~~~~~s~~~~~~v~~ 154 (191)
+|+... ....+++..+. +++ .+.++++||.++.|++.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 998431 12345554433 222 36789999999999999
Q ss_pred HHHHHHHHHHh
Q psy11135 155 AFYTLVREIKK 165 (191)
Q Consensus 155 l~~~i~~~~~~ 165 (191)
+|+.+...+..
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=6.8e-21 Score=144.63 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=106.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC---CCCCccC--CccceEEEEEEE--------------c--C----eEEEEEEEe
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH---FVDEYDP--TIEDSYRKQVVI--------------D--G----ETALLDILD 57 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~--------------~--~----~~~~~~~~D 57 (191)
.++|+++|+.++|||||+++|.+.. ......+ |....+...... + + ....+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 5899999999999999999998653 2222222 222222111110 1 1 125689999
Q ss_pred CCChhhHHHHHHhhcccCCEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHH
Q psy11135 58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSM----KSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQA 130 (191)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~ 130 (191)
|||++++.......+..+|++++|+|+++. .+.+.+.. +... ...|+++|+||+|+..... ..++.
T Consensus 90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII---GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 999999988877888899999999999853 33333322 2221 1258999999999876221 22334
Q ss_pred HHHHHH---cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 131 QELAEQ---FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 131 ~~~~~~---~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
..+.+. .+++++++||+++.|+++++++|.+.+..
T Consensus 163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 444443 35799999999999999999999887654
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=3.2e-21 Score=147.35 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=98.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCc------------------------------cCCccceEEEEEEEcCeE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEY------------------------------DPTIEDSYRKQVVIDGET 50 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 50 (191)
.++|+++|++++|||||+++|+... +.... ...+-+.... .+....
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~~~~~ 94 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YFETEK 94 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EEecCC
Confidence 5899999999999999999996542 11000 0111111112 233333
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---FE---DIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTW 123 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (191)
..+.+|||||++++......++..+|++++|+|+++... ++ .....+..+.. .+.| +++|+||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCccc
Confidence 468999999999999988888999999999999988532 11 11222222222 2456 9999999998642
Q ss_pred ccC-------HHHHHHHHHHcC------CCEEEeccCCCCCHHHHHH
Q psy11135 124 AVD-------MNQAQELAEQFN------IPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 124 ~~~-------~~~~~~~~~~~~------~~~~~~s~~~~~~v~~l~~ 157 (191)
..+ .++...+.+.++ ++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 221 223344555554 4699999999999999655
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=8.8e-22 Score=152.23 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=95.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------------------------ccCCccceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~ 49 (191)
+.+||+++|.+++|||||+++|+... +... ....+.+... ..++..
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~~ 109 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFSTH 109 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEECS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEecC
Confidence 46899999999999999999997552 1100 0011111112 223334
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFED------IGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
...+.+|||||++++......++..+|++++|+|+++...... ....+..... ....|+++|+||+|+...
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~---~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH---cCCCcEEEEEECcCcccc
Confidence 4568999999999999999999999999999999998643222 1122111221 112479999999998752
Q ss_pred -ccCHH----HHHHHHHHc-----CCCEEEeccCCCCCHHH
Q psy11135 124 -AVDMN----QAQELAEQF-----NIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 124 -~~~~~----~~~~~~~~~-----~~~~~~~s~~~~~~v~~ 154 (191)
....+ +...+...+ +++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 12222 233333333 35799999999999875
No 158
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.86 E-value=5e-21 Score=143.46 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=96.1
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNS----------MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
+.+++|||+|++.++..|..++++++++|+|||+++ ..++.....|+..+.......+.|+++|+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 668999999999999999999999999999999999 8899999999998876544567999999999998
Q ss_pred CCCc----c---------------------------CHHHHHHHH-----HH--------cCCCEEEeccCCCCCHHHHH
Q psy11135 121 STWA----V---------------------------DMNQAQELA-----EQ--------FNIPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 121 ~~~~----~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~v~~l~ 156 (191)
.... + ..+++..++ +. .++.++++||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 4311 1 134555553 22 24668899999999999999
Q ss_pred HHHHHHHHhhhh
Q psy11135 157 YTLVREIKKDKM 168 (191)
Q Consensus 157 ~~i~~~~~~~~~ 168 (191)
.++...+.....
T Consensus 377 ~~v~~~I~~~~l 388 (402)
T 1azs_C 377 NDCRDIIQRMHL 388 (402)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888865543
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=1.2e-23 Score=162.95 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=108.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCcc-ceEEEEEEE-cCeEEEEEEEeCCChhhHHHHHHhhcccCCEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVI-DGETALLDILDTAGQEEYSAMRDQYMRTGEGFL 79 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i 79 (191)
+..+|+++|++++|||||+++|.+..+.....++.. ......... ++. .+.+|||||++.+...+..++..+|+++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 467899999999999999999987664333333222 111112222 223 4788999999999998888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc--cCHHHHHHH---HHHc--CCCEEEeccCCCCCH
Q psy11135 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA--VDMNQAQEL---AEQF--NIPFIKTSAKTRMGV 152 (191)
Q Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~---~~~~--~~~~~~~s~~~~~~v 152 (191)
+|+|+++.........+ ..+. ..+.|+++|+||+|+.... ...++...+ ...+ .++++++||++|.|+
T Consensus 81 LVVDa~dg~~~qt~e~l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 81 LVVAADDGVMKQTVESI-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp EECBSSSCCCHHHHHHH-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEEECCCCccHHHHHHH-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 99999986544333322 2222 2467999999999987522 111222221 1122 247999999999999
Q ss_pred HHHHHHHHHHHH
Q psy11135 153 DDAFYTLVREIK 164 (191)
Q Consensus 153 ~~l~~~i~~~~~ 164 (191)
++++++|...+.
T Consensus 156 ~eLle~I~~l~~ 167 (537)
T 3izy_P 156 MALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHhhh
Confidence 999999988765
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.85 E-value=4.1e-21 Score=143.55 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=103.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 84 (191)
+|+++|++++|||||+++|. ....|.... ... +......+.+|||||++++.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~-~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDIT-MYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSE-EEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEee-EEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 111111111 122 33233348999999999998877778899999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEe-cCCCCCCccCH---HHHHHHHHHcC---CCEEE--eccCC---CCC
Q psy11135 85 NSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGN-KCDLSTWAVDM---NQAQELAEQFN---IPFIK--TSAKT---RMG 151 (191)
Q Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~---~~~~~~~~~~~---~~~~~--~s~~~---~~~ 151 (191)
+. .......+++..+... +.|. ++++| |+|+ ...... ++.+++.+.++ +++++ +||++ +.|
T Consensus 93 ~~-g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 PQ-GLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp TT-CCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred CC-CCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 44 3333445555444332 4676 99999 9998 522111 34444544443 68999 99999 999
Q ss_pred HHHHHHHHHHHHHhh
Q psy11135 152 VDDAFYTLVREIKKD 166 (191)
Q Consensus 152 v~~l~~~i~~~~~~~ 166 (191)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999999988764
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=1.9e-20 Score=145.48 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------CCc------cCCccceEEEEEEEcCeEEEEEEEeCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-----------------DEY------DPTIEDSYRKQVVIDGETALLDILDTA 59 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-----------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~ 59 (191)
..+|+++|++|+|||||+++|+..... .++ ...+.......+...+ +.+.+||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP 90 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP 90 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence 468999999999999999999622110 000 0111111122233343 458899999
Q ss_pred ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
|+.++......+++.+|++++|+|+++..+......| ..+.. .+.|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----TTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCEEEEEeCCCCcc
Confidence 9999999999999999999999999986655554433 33332 3689999999999865
No 162
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=1e-20 Score=142.98 Aligned_cols=159 Identities=19% Similarity=0.132 Sum_probs=107.3
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC--ccC-----Ccc-ceEEEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH-------FVDE--YDP-----TIE-DSYRKQVVIDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~~--~~~-----~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (191)
+.++|+++|+.++|||||+++|.+.. +... .+. ..+ +.......++.....+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 47899999999999999999998641 1000 000 000 00011122333344588999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCc----cCHHHHHHHHHHcC---
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWA----VDMNQAQELAEQFN--- 138 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~----~~~~~~~~~~~~~~--- 138 (191)
....++..+|++++++|+++....... ..+..+.. .+.| +++++||+|+.... ...++..++.+.++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888889999999999999985433322 22233322 2578 68999999987411 11234556677666
Q ss_pred --CCEEEeccCCCCC----------HHHHHHHHHHHHHh
Q psy11135 139 --IPFIKTSAKTRMG----------VDDAFYTLVREIKK 165 (191)
Q Consensus 139 --~~~~~~s~~~~~~----------v~~l~~~i~~~~~~ 165 (191)
++++++||+++.| +.++++.|.+.+..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999998664 88888888776653
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=1.5e-21 Score=149.14 Aligned_cols=153 Identities=15% Similarity=0.215 Sum_probs=102.9
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC--CCCCCc------------------------------cCCccceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN--HFVDEY------------------------------DPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 49 (191)
+.++|+++|+.++|||||+++|+.. .+.... ...+-+.. ...++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEecC
Confidence 4689999999999999999999864 222110 00111111 1123334
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh---hcCCCC-CcEEEEEecCCCCCCcc
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEE-VPMVLVGNKCDLSTWAV 125 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~-~p~ivv~nK~D~~~~~~ 125 (191)
...+.+|||||+.++......++..+|++++|+|+++ .+++....|..+... .....+ .|+++++||+|+.....
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 4558999999999999988899999999999999998 666654433222211 111123 36899999999976322
Q ss_pred -------CHHHHHHHHHHcC-----CCEEEeccCCCCCHHHHHH
Q psy11135 126 -------DMNQAQELAEQFN-----IPFIKTSAKTRMGVDDAFY 157 (191)
Q Consensus 126 -------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l~~ 157 (191)
..++...+++.++ ++++++||++|.|+.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1344566666666 6799999999999975543
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=6.8e-21 Score=149.68 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=105.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc----CCccceEEEEEE-------------EcCeEEEEEEEeCCChhh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----PTIEDSYRKQVV-------------IDGETALLDILDTAGQEE 63 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----~~~~~~~~~~~~-------------~~~~~~~~~~~D~~g~~~ 63 (191)
++..+|+++|++++|||||++++.+..+..... .+.+..+..... .+.....+.+|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 357899999999999999999998765432211 121111110000 001112488999999999
Q ss_pred HHHHHHhhcccCCEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--------------
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD-------------- 126 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-------------- 126 (191)
+...+..++..+|++++|+|+++ +.+++.+.. +.. .+.|+++++||+|+......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 98888888899999999999999 655554432 222 36899999999998642110
Q ss_pred HH----------HHHHHHHHcC---------------CCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 127 MN----------QAQELAEQFN---------------IPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 127 ~~----------~~~~~~~~~~---------------~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.+ +......+.+ ++++++||++|.|+++++++|...+..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 00 0111111111 379999999999999999999988764
No 165
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=1.5e-20 Score=142.61 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=107.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC----------ccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN--------HFVDE----------YDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
+.++|+++|++++|||||+++|.+. .+... ....+-.. ....++.....+.+|||||+++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINT--AHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSC--EEEEEECSSCEEEEEECCCSGG
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEe--eeeEeccCCeEEEEEECCChHH
Confidence 4689999999999999999999873 11100 00111111 2223343344588999999999
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc----CHHHHHHHHHHcC
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV----DMNQAQELAEQFN 138 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~~~~~~~~~~~~ 138 (191)
+......++..+|++++|+|+++.... ....++..+.. .+.| +++|+||+|+..... ..++..++.+.++
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 988888889999999999999886433 33445444433 2567 899999999974211 1224555666665
Q ss_pred -----CCEEEeccCCCCC------------------HHHHHHHHHHHHH
Q psy11135 139 -----IPFIKTSAKTRMG------------------VDDAFYTLVREIK 164 (191)
Q Consensus 139 -----~~~~~~s~~~~~~------------------v~~l~~~i~~~~~ 164 (191)
++++++||++|.| +.+++++|.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999877 6677777666554
No 166
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.6e-22 Score=149.00 Aligned_cols=158 Identities=21% Similarity=0.344 Sum_probs=83.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC-CCCCcc--------CCcc-ceEEEEEEEcCeEEEEEEEeCCCh-------hhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH-FVDEYD--------PTIE-DSYRKQVVIDGETALLDILDTAGQ-------EEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~-~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~ 65 (191)
.++|+++|++|+|||||+++|++.. +...+. ++.. .........++....+.+|||||+ +.+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 6899999999999999999987654 322221 1221 111222233555667999999998 4444
Q ss_pred HHHH-------hhcccCCE-----------EEEEEeCCC-hhhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCCCc-
Q psy11135 66 AMRD-------QYMRTGEG-----------FLLVFAVNS-MKSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLSTWA- 124 (191)
Q Consensus 66 ~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~- 124 (191)
.+.. .++..+++ .+++|++++ ..++..+. .++..+ ..+.|+++|+||+|+....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHH
Confidence 4443 44443332 235566554 33444443 232222 2578999999999987622
Q ss_pred cCH--HHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 125 VDM--NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 125 ~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
+.. +++..+++.++++++++|++++.+ ++.|..+.+.+.+.
T Consensus 192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 222 355666777889999999999998 88888888777653
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.84 E-value=6.4e-20 Score=140.17 Aligned_cols=149 Identities=17% Similarity=0.135 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCC----------ccCCccceE--------------------EEEEEEcCeE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE----------YDPTIEDSY--------------------RKQVVIDGET 50 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~----------~~~~~~~~~--------------------~~~~~~~~~~ 50 (191)
.++|+++|+.++|||||+++|++.. +... ..++++..+ .....+....
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4899999999999999999998654 1111 111211000 0111223334
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc-----
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV----- 125 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----- 125 (191)
..+.+|||||++++......++..+|++++|+|+++.... ....++..+... ...|+++|+||+|+.....
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~~~ 179 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVFES 179 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHHHH
Confidence 5588999999999988888889999999999999885432 223333333221 1236999999999975211
Q ss_pred CHHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135 126 DMNQAQELAEQFN-----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 126 ~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l 155 (191)
..++...+++.++ ++++++||++|.|++++
T Consensus 180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 2234556677777 68999999999999874
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2e-20 Score=147.81 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=97.5
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--------------------------------cCCccceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEY--------------------------------DPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~ 49 (191)
+.++|+++|++++|||||+++|++....-.. .+.+.+.....+...
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~-- 243 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH-- 243 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC--
Confidence 3689999999999999999999866421110 111111112222333
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---F---EDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW 123 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 123 (191)
...+.+|||||+.++......++..+|++++|+|+++... + ......+..... ....|+++|+||+|+...
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~---lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS---LGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT---TTCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH---cCCCeEEEEEecccccch
Confidence 3458899999999999999999999999999999987420 0 011111111111 122459999999998752
Q ss_pred -ccC----HHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135 124 -AVD----MNQAQELAEQFN-----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 124 -~~~----~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l 155 (191)
... .++...+...++ ++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 111 223344444444 58999999999999876
No 169
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=1.8e-19 Score=144.36 Aligned_cols=163 Identities=16% Similarity=0.248 Sum_probs=107.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceE--------EEEEEE--------------------------
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSY--------RKQVVI-------------------------- 46 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~--------~~~~~~-------------------------- 46 (191)
..++|+|+|.+|+|||||+|+|++... +....+++.... .....+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 368999999999999999999998874 333333331100 001111
Q ss_pred --------------------cCeE--EEEEEEeCCChhhH---HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy11135 47 --------------------DGET--ALLDILDTAGQEEY---SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK 101 (191)
Q Consensus 47 --------------------~~~~--~~~~~~D~~g~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 101 (191)
+... ..+.+|||||.... ......++..+|++++|+|.+++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000 24789999997653 3455677889999999999998777666655543332
Q ss_pred hhcCCCCCcEEEEEecCCCCCCc-cCHH---H-------HHH-----HHHH--------cCCCEEEeccC----------
Q psy11135 102 RVKDAEEVPMVLVGNKCDLSTWA-VDMN---Q-------AQE-----LAEQ--------FNIPFIKTSAK---------- 147 (191)
Q Consensus 102 ~~~~~~~~p~ivv~nK~D~~~~~-~~~~---~-------~~~-----~~~~--------~~~~~~~~s~~---------- 147 (191)
..+.|+++|+||+|+.... ++.+ + ... +... ...+++++||+
T Consensus 228 ----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 228 ----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp ----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred ----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 2367899999999986422 1111 1 111 1111 12479999999
Q ss_pred ----CCCCHHHHHHHHHHHHHhhhh
Q psy11135 148 ----TRMGVDDAFYTLVREIKKDKM 168 (191)
Q Consensus 148 ----~~~~v~~l~~~i~~~~~~~~~ 168 (191)
++.|++++++.|.+.+...+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~~~~ 328 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTRERA 328 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHHTHH
T ss_pred hhhhhccCHHHHHHHHHHHHHHhHH
Confidence 999999999999988865443
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1.6e-20 Score=137.09 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC------ccCC-----------------------ccc---------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPT-----------------------IED--------------- 38 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~-----------------------~~~--------------- 38 (191)
..+|+|+|.+|||||||+++|.+..+... ..++ +.+
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g 105 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 105 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCS
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhcc
Confidence 46999999999999999999998875311 1121 000
Q ss_pred --------eEEEEEEEcCeEEEEEEEeCCChh-------------hHHHHHHhhcccCCEEE-EEEeCCChhhHHHHHHH
Q psy11135 39 --------SYRKQVVIDGETALLDILDTAGQE-------------EYSAMRDQYMRTGEGFL-LVFAVNSMKSFEDIGSY 96 (191)
Q Consensus 39 --------~~~~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~~ 96 (191)
........ .....+.+|||||.. .+......++..++.++ +++|+++..+......+
T Consensus 106 ~~~gi~~~~~~~~~~~-~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 106 TNKGISPVPINLRVYS-PHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp STTCCCSCCEEEEEEE-TTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred cCCCccccceEEEEeC-CCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 00000000 012458899999963 45567777788888766 79999875443332233
Q ss_pred HHHHHhhcCCCCCcEEEEEecCCCCCCcc-CHHHHHHHHHH--cC-CCEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 97 REQIKRVKDAEEVPMVLVGNKCDLSTWAV-DMNQAQELAEQ--FN-IPFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~--~~-~~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
+..+ ...+.|+++|+||+|+..... ..+..+..... .+ .+++++||+++.|+++++++|.+..
T Consensus 185 ~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 185 AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHH----CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHh----CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3333 234689999999999976332 22222210001 12 3678899999999999999988743
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=4.5e-22 Score=153.00 Aligned_cols=150 Identities=22% Similarity=0.312 Sum_probs=102.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCC-ccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEE
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLL 80 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 80 (191)
+..+|+++|+.++|||||+++|.+..+.....+. +.......+..++. .+.+|||||++.+...+...+..+|++++
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 4678999999999999999999876543322211 11111112223444 47899999999998888888899999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC---ccCHH--HHHHHHHHcC--CCEEEeccCCCC
Q psy11135 81 VFAVNS---MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW---AVDMN--QAQELAEQFN--IPFIKTSAKTRM 150 (191)
Q Consensus 81 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~--~~~~~~~~~~--~~~~~~s~~~~~ 150 (191)
|+|+++ +.+.+.+ ..... .+.|+++++||+|+... .+..+ +...++..++ ++++++||++|.
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 999988 3333322 22222 36799999999999642 11111 0011123333 689999999999
Q ss_pred CHHHHHHHHHH
Q psy11135 151 GVDDAFYTLVR 161 (191)
Q Consensus 151 ~v~~l~~~i~~ 161 (191)
|+++++++|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999999864
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=2.2e-19 Score=128.69 Aligned_cols=119 Identities=23% Similarity=0.274 Sum_probs=80.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhh-------
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQY------- 71 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~------- 71 (191)
|++++|+++|.+|+|||||++++++... ...+.+++..........++. .+.+|||||+.++......+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence 4689999999999999999999998874 444445444444555555655 48899999986543221111
Q ss_pred c--ccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC-CCCcEEEEEecCCCCC
Q psy11135 72 M--RTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDA-EEVPMVLVGNKCDLST 122 (191)
Q Consensus 72 ~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 122 (191)
+ ..+|++++|++++... +... ..|+..+...... ...|+++|+||+|+..
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 1 2689999999997754 3222 3555555543221 1249999999999864
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=2.5e-19 Score=137.53 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=98.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------------------C------ccCCccceEEEEEEEcCe
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------E------YDPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~~ 49 (191)
+.++|+++|++++|||||+++|++.. +.. + ....+-+.... .++..
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~--~~~~~ 83 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALW--KFETP 83 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCE--EEECS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEE--EEecC
Confidence 46899999999999999999998641 110 0 00111111111 23333
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCCc-EEEEEecCCCCC
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS---FE---DIGSYREQIKRVKDAEEVP-MVLVGNKCDLST 122 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (191)
...+.+|||||+.++......++..+|++++|+|+++... |+ .....+..... .+.| +++|+||+|+..
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 4568999999999999988899999999999999987531 11 12222222222 2455 999999999873
Q ss_pred C-c----cCHHHHHHHHHHcC-----CCEEEeccCCCCCHHHH
Q psy11135 123 W-A----VDMNQAQELAEQFN-----IPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 123 ~-~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~l 155 (191)
. . ...++...+++.++ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 1 1 12234555666665 68999999999998744
No 174
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=9.1e-20 Score=126.48 Aligned_cols=153 Identities=14% Similarity=0.189 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccce-EEEEEEEcCeEEEEEEEeCCChh----------hHHHHHHhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETALLDILDTAGQE----------EYSAMRDQY 71 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~~~~ 71 (191)
..+|+++|++|||||||++++.+..+.....++.+.. .......++ .+.+|||||.. .+......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 5789999999999999999998776332223333322 122223333 36789999973 233333334
Q ss_pred c---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc---cCHHHHHHHHHHcC--CCE
Q psy11135 72 M---RTGEGFLLVFAVNSMKSFED--IGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA---VDMNQAQELAEQFN--IPF 141 (191)
Q Consensus 72 ~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~--~~~ 141 (191)
+ ..++++++++|+++..+... +..|+ . ..+.|.++|+||+|+.... ...+.+..++...+ +.+
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---V----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---H----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHH---H----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 4 46889999999988654321 22222 1 2367999999999986521 11233444444444 468
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 142 IKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 142 ~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
+++|++++.+++++++.|.+.+.+
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEEeecCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999887644
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=4.4e-19 Score=133.93 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=110.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhH----H---HHHHhhcccCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY----S---AMRDQYMRTGE 76 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~---~~~~~~~~~~~ 76 (191)
.|+++|++|||||||++++.+... ...++.++.......+..++ ...+.+||+||..+. . .........++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999987652 23333333322233344443 234789999996321 1 11112245789
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHHH
Q psy11135 77 GFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDA 155 (191)
Q Consensus 77 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l 155 (191)
.++.++|++ ...+..+..+..++..+.. ....|.++|+||+|+... ...+......+..+.+++++||+++.|++++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 999999998 5566677777766655431 124699999999998753 2223344445556789999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy11135 156 FYTLVREIKKDKM 168 (191)
Q Consensus 156 ~~~i~~~~~~~~~ 168 (191)
+++|.+.+.+.+.
T Consensus 316 ~~~i~~~l~~~~~ 328 (416)
T 1udx_A 316 KEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhccc
Confidence 9999999976554
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.81 E-value=4.1e-19 Score=146.21 Aligned_cols=158 Identities=19% Similarity=0.157 Sum_probs=105.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCC-------CCC--Ccc-----CCccceE-EEEEEEcCeEEEEEEEeCCChhhHHH
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNH-------FVD--EYD-----PTIEDSY-RKQVVIDGETALLDILDTAGQEEYSA 66 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~-------~~~--~~~-----~~~~~~~-~~~~~~~~~~~~~~~~D~~g~~~~~~ 66 (191)
+.++|+++|++++|||||+++|.+.. +.. ..+ .+.+... .....++.....+.+|||||+.++..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 46899999999999999999998641 000 000 0001000 01122334445588999999999988
Q ss_pred HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc----CHHHHHHHHHHcC---
Q psy11135 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV----DMNQAQELAEQFN--- 138 (191)
Q Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~----~~~~~~~~~~~~~--- 138 (191)
....++..+|++++|+|+++..... ...++..+.. .++| +++|+||+|+..... ..++...+.+.++
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 8888899999999999998853222 2333333333 2567 789999999975211 1234556666665
Q ss_pred --CCEEEeccCCC--------CCHHHHHHHHHHHHH
Q psy11135 139 --IPFIKTSAKTR--------MGVDDAFYTLVREIK 164 (191)
Q Consensus 139 --~~~~~~s~~~~--------~~v~~l~~~i~~~~~ 164 (191)
++++++||++| .|+.++++.|.+.+.
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 357888888776554
No 177
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=3.9e-20 Score=142.33 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=86.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC------------------------C-------ccCCccceEEEEEEEcCe
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD------------------------E-------YDPTIEDSYRKQVVIDGE 49 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~------------------------~-------~~~~~~~~~~~~~~~~~~ 49 (191)
.++|+++|+.++|||||+++|+... +.. + ...|.... ...+..++
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~-~~~~~~~~- 120 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG-RAYFETEH- 120 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC-----------------------------CCEEECSS-
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee-eEEEecCC-
Confidence 5799999999999999999997422 110 0 00011100 11122333
Q ss_pred EEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCCcc
Q psy11135 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTWAV 125 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~ 125 (191)
..+.+|||||++++.......+..+|++++|+|+++.. +|+....+...+.. ....+.| +++|+||+|+.....
T Consensus 121 -~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~-~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 -RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL-ARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp -EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHH-HHHTTCSSEEEEEECTTSTTCSS
T ss_pred -eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHH-HHHcCCCEEEEEEECccCCCccc
Confidence 45889999999999888888899999999999998852 22111111111111 1123566 999999999965322
Q ss_pred C-------HHHHHHHHHHc-C------CCEEEeccCCCCCHHHHH
Q psy11135 126 D-------MNQAQELAEQF-N------IPFIKTSAKTRMGVDDAF 156 (191)
Q Consensus 126 ~-------~~~~~~~~~~~-~------~~~~~~s~~~~~~v~~l~ 156 (191)
+ .++...+.+.+ + ++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 2 22355566655 3 569999999999998765
No 178
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=1.3e-18 Score=138.95 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCc----------------c-ceEEEEEEEcCeEEEEEEEeCCChhhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----------------E-DSYRKQVVIDGETALLDILDTAGQEEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 65 (191)
..+|+++|+.|+|||||++++.+........++. . +.......+....+.+.+|||||+.++.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 4589999999999999999998543211110000 0 1111122233334568999999999998
Q ss_pred HHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135 66 AMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ 136 (191)
Q Consensus 66 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 136 (191)
.....+++.+|++++++|.++..... ...++..+.. .+.|+++|+||+|+. ....+...++.+.
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~--~~~~~~~~~l~~~ 152 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG--GDYYALLEDLRST 152 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC--CCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh--hhHHHHHHHHHHH
Confidence 88889999999999999987744322 2244444433 368999999999987 3333444444443
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=3.3e-18 Score=133.11 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=77.1
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCCCCcc----------CCccc-----------eEEEEEEEcCeEEEEEEEeCCC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----------PTIED-----------SYRKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~~~~~----------~~~~~-----------~~~~~~~~~~~~~~~~~~D~~g 60 (191)
+..+|+++|++|+|||||+++|+......... .+..+ .......++...+.+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35799999999999999999998642100000 00000 0000112222345589999999
Q ss_pred hhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
+.++......++..+|++++|+|+++... .+...+.......+.|+++|+||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~-----~~t~~~~~~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE-----DRTRKLMEVTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSC-----HHHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccch-----HHHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence 99988888888999999999999988532 1222222333345789999999999865
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=1.4e-18 Score=127.63 Aligned_cols=113 Identities=14% Similarity=0.169 Sum_probs=71.6
Q ss_pred EEEEEEeCCChhh-------------HHHHHHhhcccCCEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy11135 51 ALLDILDTAGQEE-------------YSAMRDQYMRTGEGFLLVFAVNSMKSF-EDIGSYREQIKRVKDAEEVPMVLVGN 116 (191)
Q Consensus 51 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~p~ivv~n 116 (191)
..+.+|||||..+ +......++..+|++++++|..+.... .....+... ....+.|+++|+|
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~----~~~~~~~~i~v~N 206 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKE----VDPEGKRTIGVIT 206 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHH----HCSSCSSEEEEEE
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHH----hCCCCCcEEEEEc
Confidence 3588999999753 456677788999999999997432211 111122222 2234789999999
Q ss_pred cCCCCCCcc-CHHHHHHHHHHcCCCEEEeccC---C---CCCHHHHHHHHHHHHHhhh
Q psy11135 117 KCDLSTWAV-DMNQAQELAEQFNIPFIKTSAK---T---RMGVDDAFYTLVREIKKDK 167 (191)
Q Consensus 117 K~D~~~~~~-~~~~~~~~~~~~~~~~~~~s~~---~---~~~v~~l~~~i~~~~~~~~ 167 (191)
|+|+..... ..+........++..++++++. + +.|+.++++.+...+....
T Consensus 207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 999976332 2222221111223567777655 3 7899999999988887643
No 181
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1.2e-19 Score=132.34 Aligned_cols=157 Identities=20% Similarity=0.309 Sum_probs=82.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC-CCCCCc--------cCCcc-ceEEEEEEEcCeEEEEEEEeCCCh-------hhHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN-HFVDEY--------DPTIE-DSYRKQVVIDGETALLDILDTAGQ-------EEYS 65 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~-~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~-------~~~~ 65 (191)
+++|+++|+.|+|||||+++|.+. .++... .++.. .........++....+.+||++|. +.+.
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 589999999999999999998875 333222 11111 111222223444567899999997 3333
Q ss_pred HHHH-------hhccc-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-c
Q psy11135 66 AMRD-------QYMRT-------------GEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-A 124 (191)
Q Consensus 66 ~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~ 124 (191)
.... .++.. +++++++.+.+. .+++.+.. ..+... ....|+++|+||+|+... +
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l--~~~~~iilV~~K~Dl~~~~e 172 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI--HNKVNIVPVIAKADTLTLKE 172 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH--TTTSCEEEEECCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH--HhcCCEEEEEEeCCCCCHHH
Confidence 3322 23222 233444433222 12333321 222222 135799999999998752 2
Q ss_pred --cCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 125 --VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 125 --~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
...+++.++++.++++++++||+++ +++++|..+.+.+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 2345677888899999999999999 999999999988864
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=6.2e-18 Score=135.49 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CC------C------------CccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FV------D------------EYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
..+|+++|++|+|||||+++|.... +. . ....|... ........ .+.+.+|||||+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~-~~~~~~~~--~~~i~liDTPG~~ 88 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITA-AVTTCFWK--DHRINIIDTPGHV 88 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------C-CEEEEEET--TEEEEEECCCSST
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhccccccc-ceEEEEEC--CeEEEEEECcCcc
Confidence 5789999999999999999998421 10 0 00111111 11122233 3568999999999
Q ss_pred hHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
++......++..+|++++++|+++..+......|.. +.. .+.|+++|+||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 999889999999999999999998776665554443 333 2689999999999865
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=6.2e-19 Score=131.81 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=73.5
Q ss_pred EEEEEeCCChhhH-------------HHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135 52 LLDILDTAGQEEY-------------SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118 (191)
Q Consensus 52 ~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (191)
.+.+|||||..+. ......++..+++++++++..+.+... ..|+..+.. ....+.|+++|+||+
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~-~~~~~~~~i~V~nK~ 213 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISRE-VDPSGDRTFGVLTKI 213 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHH-SCTTCTTEEEEEECG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHH-hcccCCCEEEEEeCC
Confidence 4789999997664 567778899999999999875533211 223332322 334578999999999
Q ss_pred CCCCC-ccCHHHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHH
Q psy11135 119 DLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 119 D~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|+... ....+........++.+|+++++..+.++++.+..+.
T Consensus 214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 99763 3344444444556678999999999988877655543
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.77 E-value=3.2e-18 Score=123.19 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=78.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhh-
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQY- 71 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~- 71 (191)
++++|+++|.+|+|||||+|++++..+. ....+++..........++ ..+.+|||||+.++. .....+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4789999999999999999999987742 3334444333333333343 458899999976532 111122
Q ss_pred -cccCCEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC-CCCcEEEEEecCCCCC
Q psy11135 72 -MRTGEGFLLVFAVNSMKSFEDI-GSYREQIKRVKDA-EEVPMVLVGNKCDLST 122 (191)
Q Consensus 72 -~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 122 (191)
...+|++++|+|++... +... ..|+..+...... ...|+++|+||+|+..
T Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 34799999999987632 3222 3566555443221 1269999999999875
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=5.1e-19 Score=133.23 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEE---------------------EEcC-eEEEEEEEeCCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQV---------------------VIDG-ETALLDILDTAG 60 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~-~~~~~~~~D~~g 60 (191)
++|+++|.+|||||||+|++++... ...++.++........ .+++ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998762 2344434332222111 1122 246799999999
Q ss_pred hhhH----HHHHH---hhcccCCEEEEEEeCCCh
Q psy11135 61 QEEY----SAMRD---QYMRTGEGFLLVFAVNSM 87 (191)
Q Consensus 61 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~ 87 (191)
..+. ..+.. ..++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 8642 22333 336789999999999875
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.76 E-value=4e-21 Score=151.32 Aligned_cols=155 Identities=16% Similarity=0.188 Sum_probs=84.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------------------------ccCCccceEEEEEEEcCeE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVIDGET 50 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 50 (191)
.++|+++|++++|||||+++|+... +... ..+++.+.... .+....
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~--~~~~~~ 254 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST--TFESDK 254 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE--EEEeCC
Confidence 5789999999999999999996432 1100 00011111111 122233
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCCC
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK---SF---EDIGSYREQIKRVKDAEEVP-MVLVGNKCDLSTW 123 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 123 (191)
..+.||||||+.++.......+..+|++++|+|+++.. .+ ......+..+.. .+.| +++|+||+|+...
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccc
Confidence 45889999999988777777788999999999998532 01 011122222222 2455 9999999998651
Q ss_pred -cc----CHHHHHHHH-HHcCC-----CEEEeccCCCCCHH--------------HHHHHHHHHH
Q psy11135 124 -AV----DMNQAQELA-EQFNI-----PFIKTSAKTRMGVD--------------DAFYTLVREI 163 (191)
Q Consensus 124 -~~----~~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~--------------~l~~~i~~~~ 163 (191)
.. ..++...+. +.+++ +++++||++|.|+. .+++.|...+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 11 112233333 44454 69999999999998 6777665543
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=131.04 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=79.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCc-------cCCcc-ceEEEEEEEcCeEEEEEEEeCCChhhHH-------H
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEY-------DPTIE-DSYRKQVVIDGETALLDILDTAGQEEYS-------A 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~ 66 (191)
+++|+++|++|+|||||++.|++.... ... .++.. .........++....+.+||++|..... .
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 578999999999999999999987753 211 11111 1111111223333468999999975431 1
Q ss_pred H------------------HHhhcccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCCcEEEEEecCCCCC-Ccc
Q psy11135 67 M------------------RDQYMRTGEGFLLVFAVNSM-KSFEDIG-SYREQIKRVKDAEEVPMVLVGNKCDLST-WAV 125 (191)
Q Consensus 67 ~------------------~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~ 125 (191)
+ ...++.++++.+++|+.... .++.... .|+..+. .+.|+|+|+||+|+.. ..+
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence 1 01223445555555555443 3444443 4544442 2689999999999875 222
Q ss_pred CH--HHHHHHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 126 DM--NQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 126 ~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
.. +.+.+.+...+++++++|+.++.++.+++..+...++
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 22 4566677788999999999999999998888877654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=1.1e-16 Score=128.51 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=78.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------Ccc-------CCccceEEEEEEEc-----CeEEEEEEEe
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVD-----------EYD-------PTIEDSYRKQVVID-----GETALLDILD 57 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~-----------~~~-------~~~~~~~~~~~~~~-----~~~~~~~~~D 57 (191)
..+|+++|+.|+|||||+++|+... +.. ++. .|... ......++ +..+.+.+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~-~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITS-AATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeee-ceEEEEECCccccCCceeEEEEe
Confidence 4689999999999999999997532 110 000 01100 01112222 2337799999
Q ss_pred CCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
|||+.++......+++.+|++++++|+++.........| ..... .+.|+++|+||+|+..
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCCCEEEEEeCCCccc
Confidence 999999988888899999999999999986544433333 22222 3689999999999854
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=5.6e-17 Score=130.02 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=79.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------Cc------cCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN--HFVD-----------EY------DPTIEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~--~~~~-----------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
..+|+++|++|+|||||+++|+.. .+.. ++ ...+-.........++ +.+.+|||||+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence 578999999999999999999852 2210 00 0001111112223333 4588999999999
Q ss_pred HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 64 YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 64 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
+......+++.+|++++|+|+++..+......|. .+.. .+.|+++|+||+|+..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence 8888888899999999999999876655554443 3333 2689999999999865
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=1.1e-18 Score=127.27 Aligned_cols=133 Identities=21% Similarity=0.201 Sum_probs=105.4
Q ss_pred HHHHHHHhCCCC-CCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHH
Q psy11135 18 ALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGS 95 (191)
Q Consensus 18 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~ 95 (191)
+|+.++..+.+. ..+.||.++.+......+ . .+.+||+ ++++..++..+++++|++++|||+++++ ++..+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~-~--~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDET-G--SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCS-S--SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCC-C--eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 566666666776 778888887665432222 2 4789999 8888889999999999999999999987 7888888
Q ss_pred HHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcC--CCEEEeccCCCCCHHHHHHHHH
Q psy11135 96 YREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 96 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
|+..+.. .+.|+++|+||+|+.+... .++..++++.++ ++++++||++|.|++++|..+.
T Consensus 107 ~l~~~~~----~~~piilv~NK~DL~~~~~-v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 107 FLVLAEK----NELETVMVINKMDLYDEDD-LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHH----TTCEEEEEECCGGGCCHHH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHH----CCCCEEEEEeHHHcCCchh-HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 8876654 3689999999999975221 244667777777 8999999999999999998764
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=6.3e-16 Score=114.49 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=90.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCeE---------------EEEEEEeCCChhhHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------ALLDILDTAGQEEYSA 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~~ 66 (191)
.++|+++|.+|||||||+|++.+... ...++.++.........+++.. ..+.+|||||+.+..+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 47999999999999999999998763 3344333322212223344421 4589999999876542
Q ss_pred H-------HHhhcccCCEEEEEEeCCCh----------hhHHHHHHHHHHH-----------------------------
Q psy11135 67 M-------RDQYMRTGEGFLLVFAVNSM----------KSFEDIGSYREQI----------------------------- 100 (191)
Q Consensus 67 ~-------~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~----------------------------- 100 (191)
. ....++.+|++++|+|+++. +.+..+..+..++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 1 12246889999999999862 1222221111111
Q ss_pred ------------------------------HhhcCCCCCcEEEEEecCCCCC-CccCHHHHHHHHHHcCCCEEEeccC
Q psy11135 101 ------------------------------KRVKDAEEVPMVLVGNKCDLST-WAVDMNQAQELAEQFNIPFIKTSAK 147 (191)
Q Consensus 101 ------------------------------~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~s~~ 147 (191)
..+.....+|+++++|+.|..- .....+....+++..+.+++++||+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 0111233589999999998652 2333556677888889999999954
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=1e-17 Score=124.84 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=70.0
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA 130 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 130 (191)
+.+.+|||||.... .......+|++++++|....+....+. . .....|.++|+||+|+..........
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivVlNK~Dl~~~~~~~~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVVVNKADGEHHKEARLAA 239 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEEEECCCGGGHHHHHHHH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEEEECCCCcChhHHHHHH
Confidence 45889999995442 223357899999999987654432221 1 11246999999999986421111222
Q ss_pred HHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 131 QELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 131 ~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.++... ++.+++++||++|.|+++++++|.+.+..
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 233322 25789999999999999999999988764
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=3.3e-17 Score=122.15 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=90.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCc-----cCC-----------------------ccc---------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV-DEY-----DPT-----------------------IED--------------- 38 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~-~~~-----~~~-----------------------~~~--------------- 38 (191)
..+|+|+|.+|||||||+++|.+..+. ... .|+ +..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999988753 111 111 000
Q ss_pred ------eEEEEEEE-cCeEEEEEEEeCCChh-------------hHHHHHHhhcccCC-EEEEEEeCCChhhHHHHHHHH
Q psy11135 39 ------SYRKQVVI-DGETALLDILDTAGQE-------------EYSAMRDQYMRTGE-GFLLVFAVNSMKSFEDIGSYR 97 (191)
Q Consensus 39 ------~~~~~~~~-~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~ 97 (191)
.......+ ......+.+|||||.. .+......++...+ +++++.+.+....-.....++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 00000001 1112458899999953 34556666666655 455566665422211111222
Q ss_pred HHHHhhcCCCCCcEEEEEecCCCCCCcc-CHHHHHH--HHHHcC-CCEEEeccCCCCCHHHHHHHHHH
Q psy11135 98 EQIKRVKDAEEVPMVLVGNKCDLSTWAV-DMNQAQE--LAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 98 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~--~~~~~~-~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
.. ....+.|+++|+||+|+..... ..+.... +....+ .+++++||+++.|++++++++..
T Consensus 191 ~~----~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KE----VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HH----HCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HH----hCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22 2335789999999999976332 1221110 000123 25678999999999999998876
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.66 E-value=3.2e-17 Score=121.82 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=62.1
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA 130 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 130 (191)
+.+.++||+|.... .......+|.+++++|.++......+.. .+ ...|.++|+||+|+..........
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHHHH
Confidence 34789999996422 2334678999999999987543221111 11 135889999999985311111112
Q ss_pred HHHHH----------HcCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 131 QELAE----------QFNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 131 ~~~~~----------~~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
..+.. .+..+++++|++++.|+++++++|.+.+.
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 22322 12457899999999999999999988764
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=2.2e-16 Score=123.54 Aligned_cols=116 Identities=16% Similarity=0.237 Sum_probs=78.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCCccceEEEEE-----------------------------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV---DEYDPTIEDSYRKQV----------------------------------- 44 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~----------------------------------- 44 (191)
..+|+|+|.+|+|||||+|+|++..+. ....+++........
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 468999999999999999999998753 233333321110000
Q ss_pred --EEcCe-EEEEEEEeCCChhh-----------HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc
Q psy11135 45 --VIDGE-TALLDILDTAGQEE-----------YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP 110 (191)
Q Consensus 45 --~~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p 110 (191)
..++. ...+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.|
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~p 220 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDK 220 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGG
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCC
Confidence 00000 02478999999875 556677788899999999999875444444555544432 3579
Q ss_pred EEEEEecCCCCC
Q psy11135 111 MVLVGNKCDLST 122 (191)
Q Consensus 111 ~ivv~nK~D~~~ 122 (191)
+++|+||+|+..
T Consensus 221 vilVlNK~Dl~~ 232 (550)
T 2qpt_A 221 IRVVLNKADMVE 232 (550)
T ss_dssp EEEEEECGGGSC
T ss_pred EEEEEECCCccC
Confidence 999999999875
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=1.3e-16 Score=111.34 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=92.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC-------CccCCccc-------eEEEEEEEc------------------CeE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD-------EYDPTIED-------SYRKQVVID------------------GET 50 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~-------~~~~~~~~-------~~~~~~~~~------------------~~~ 50 (191)
..+|+++|.+|+|||||++++....... ....++.+ ... ...++ ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIK-AEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCE-EEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCc-EEEecCCceeecccHHHHHHHHhcCC
Confidence 4689999999999999999998652111 00000000 000 01111 122
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCC-ccCHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTW-AVDMNQ 129 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~ 129 (191)
+.+.+|||+|+.... ..+....+.+++++|+++.... ...+.. . .+.|.++|+||+|+... ....++
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~-~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPE-I------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHH-H------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhh-h------hhcCCEEEEecccCCcchhhHHHH
Confidence 457789999851110 1112356789999998765321 111111 1 13689999999998642 235555
Q ss_pred HHHHHHHc--CCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 130 AQELAEQF--NIPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 130 ~~~~~~~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
.....+.. +++++++|+++|.|+++++++|.+.+...
T Consensus 177 ~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 177 MKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 65555554 46899999999999999999998877553
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.64 E-value=2.4e-18 Score=120.62 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=45.7
Q ss_pred CcEEEEEecCCCCCC-ccCHHHHHHHHHHc--CCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 109 VPMVLVGNKCDLSTW-AVDMNQAQELAEQF--NIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 109 ~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~--~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.|.++|+||+|+... ....++...+++.. +++++++||++|.|++++|++|.+.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 578999999998652 24566666666654 5789999999999999999999887754
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.64 E-value=1.2e-15 Score=113.64 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcC-------------------eEEEEEEEeCCChhh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDG-------------------ETALLDILDTAGQEE 63 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~ 63 (191)
++|+++|.+|+|||||++++.+.. ....++.++.........+++ ....+.+|||||..+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 689999999999999999999765 233443332211111122221 224589999999765
Q ss_pred HH-------HHHHhhcccCCEEEEEEeCCChh----------hHHHHHHHHHHH--------------------------
Q psy11135 64 YS-------AMRDQYMRTGEGFLLVFAVNSMK----------SFEDIGSYREQI-------------------------- 100 (191)
Q Consensus 64 ~~-------~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~-------------------------- 100 (191)
.. ......++.+|++++|+|+++.. ....+..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 32 22233478999999999997521 111111000000
Q ss_pred --------------------------------HhhcCCCCCcEEEEEecCCCC--CC--ccCHHHHHHHHHHcCCCEEEe
Q psy11135 101 --------------------------------KRVKDAEEVPMVLVGNKCDLS--TW--AVDMNQAQELAEQFNIPFIKT 144 (191)
Q Consensus 101 --------------------------------~~~~~~~~~p~ivv~nK~D~~--~~--~~~~~~~~~~~~~~~~~~~~~ 144 (191)
..+......|+++++||.|.. .. ....+..+.+++..+++++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000012247999999999742 22 334566777888889999999
Q ss_pred ccCCCCCHHHHHH
Q psy11135 145 SAKTRMGVDDAFY 157 (191)
Q Consensus 145 s~~~~~~v~~l~~ 157 (191)
||+...++.++..
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9887555554443
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.63 E-value=3.5e-15 Score=106.75 Aligned_cols=114 Identities=17% Similarity=0.065 Sum_probs=68.5
Q ss_pred EEEEEEeCCChhhHHHHHH------hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEYSAMRD------QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.+|||||..+...... ..+.. +++++++|.....+..................+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 4588999999876543211 23455 7888888765432222222111111111111257999999999987521
Q ss_pred cCHHHHHH----------------------------HHHHcC--CCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 125 VDMNQAQE----------------------------LAEQFN--IPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 125 ~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
. .++..+ +++.++ .+++++|++++.|+++++++|.+.+...
T Consensus 188 ~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 188 E-KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp H-HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred c-HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 1 111111 123433 4899999999999999999998887653
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=1.3e-14 Score=113.46 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-----------------CCCccC-------CccceEEEEEEEcCeEEEEEEEeCCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF-----------------VDEYDP-------TIEDSYRKQVVIDGETALLDILDTAG 60 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~-----------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~D~~g 60 (191)
+|+++|+.++|||||..+|+...- ..++.+ |... ....+.+++ +.+.|+||||
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s-~~~~~~~~~--~~iNlIDTPG 109 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTT-SVMQFPYRD--RVVNLLDTPG 109 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTT-TEEEEEETT--EEEEEECCCC
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEee-ceEEEEECC--EEEEEEeCCC
Confidence 689999999999999999963211 011110 1111 112233444 4588999999
Q ss_pred hhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
+.++.......++.+|++++|+|+...-......-| +.... .++|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccchh
Confidence 999999999999999999999999884433333333 33333 3789999999999754
No 201
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.7e-14 Score=105.63 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH-------HHHHhhcccC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS-------AMRDQYMRTG 75 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 75 (191)
-+|+++|.|+||||||+|+|++.. ...+++.++.+.......+++.. ++++||||..+.. ...-..++.+
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 479999999999999999999876 45677778877777777788776 7889999964321 1122346789
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCCCcEEEEEecCCCCC---------CccCHHHHHHHHHHcCCCEEEec
Q psy11135 76 EGFLLVFAVNSMKSFEDIGSYREQIKRV-KDAEEVPMVLVGNKCDLST---------WAVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 76 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~---------~~~~~~~~~~~~~~~~~~~~~~s 145 (191)
|++++|+|..++.. .......++..+ ....+.|.+++.||.|... ...+.++.+.+...+.+.--++-
T Consensus 151 d~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~ 228 (376)
T 4a9a_A 151 NLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIA 228 (376)
T ss_dssp SEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEE
T ss_pred CccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCee
Confidence 99999999998643 222233333322 1234578899999999743 33566777777776665333333
Q ss_pred cCCCCCHHHHHH
Q psy11135 146 AKTRMGVDDAFY 157 (191)
Q Consensus 146 ~~~~~~v~~l~~ 157 (191)
-..+...+++.+
T Consensus 229 ~~~nv~eddl~d 240 (376)
T 4a9a_A 229 FRCDATVDDLID 240 (376)
T ss_dssp ECSCCCHHHHHH
T ss_pred ecccCCHHHHHH
Confidence 334445555544
No 202
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=4.3e-15 Score=121.44 Aligned_cols=114 Identities=24% Similarity=0.310 Sum_probs=81.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC--CCCCc--------------c--CCccce-EEEEEE------------EcCeEE
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEY--------------D--PTIEDS-YRKQVV------------IDGETA 51 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~--~~~~~--------------~--~~~~~~-~~~~~~------------~~~~~~ 51 (191)
..+|+++|+.|+|||||+++|+... ..... . .|.... ....+. .++..+
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 4689999999999999999998642 11100 0 011111 111111 234477
Q ss_pred EEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
.+.+|||||+.++...+..+++.+|++++|+|+++..+......|.... . .+.|+++|+||+|+.
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence 8999999999999999999999999999999999977766655444322 2 368999999999986
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.58 E-value=7.4e-15 Score=117.70 Aligned_cols=154 Identities=21% Similarity=0.179 Sum_probs=94.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccce------------------------------------------
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDS------------------------------------------ 39 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~------------------------------------------ 39 (191)
-.+|+|+|.+++|||||+|+|.+..+ +....+++...
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 35899999999999999999999875 33322222100
Q ss_pred ---------EEEEEEEcCeEEEEEEEeCCChhh-------------HHHHHHhhc-ccCCEEEEEEeCCChhhHHHHHHH
Q psy11135 40 ---------YRKQVVIDGETALLDILDTAGQEE-------------YSAMRDQYM-RTGEGFLLVFAVNSMKSFEDIGSY 96 (191)
Q Consensus 40 ---------~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~ 96 (191)
....+..+ ....+.++||||... +......++ ..+|++++|+|+++.........+
T Consensus 131 ~~~~is~~~i~l~I~~P-~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp STTCCCSCCEEEEEEET-TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCcccccceEEEEecC-CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 00001111 112377999999443 233344443 578999999999874322222223
Q ss_pred HHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH----cC-CCEEEeccCCCCCHHHHHHHHHHH
Q psy11135 97 REQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ----FN-IPFIKTSAKTRMGVDDAFYTLVRE 162 (191)
Q Consensus 97 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~l~~~i~~~ 162 (191)
+..+ ...+.|+++|+||+|+............ .+. .+ .+++++||+++.|++++++++...
T Consensus 210 l~~L----~~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 210 AKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHH----CTTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHH----HhcCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 3233 3346899999999999863322111111 111 12 356789999999999999998873
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.57 E-value=1.3e-15 Score=113.01 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQA 130 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 130 (191)
+.+.++||||....... ....+|++++++|.+..+.+..+.. .. .+.|.++|+||+|+..........
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~ 216 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIAR 216 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHH
Confidence 45889999997654332 3578999999999976433211111 00 135889999999986521111111
Q ss_pred HHHH---HHc-------CCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 131 QELA---EQF-------NIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 131 ~~~~---~~~-------~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
.++. ... ..+++++||++|.|+++++++|...+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1222 121 457899999999999999999988765
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=5.6e-15 Score=117.61 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--CCC---CccC-Cccc-----------eEEEEEEEcCeEEEEEEEeCCChhhHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--FVD---EYDP-TIED-----------SYRKQVVIDGETALLDILDTAGQEEYSAM 67 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--~~~---~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 67 (191)
+|+++|+.++|||||..+|+... ... .... +..+ .......+....+.+.++|||||.++...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 68999999999999999997322 110 0000 0000 00111122333445889999999999999
Q ss_pred HHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
....++.+|++++|+|+...-.... ...++....+ ++|.++++||+|...
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM----GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH----TCSCEECCEECCSSS
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc----CCCeEEEEecccccc
Confidence 9999999999999999987332222 2333344443 679999999999754
No 206
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.48 E-value=9.6e-14 Score=102.62 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=64.2
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC-CccCHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST-WAVDMNQ 129 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~ 129 (191)
+.+.++||||...... .....+|.+++++|....+....+... +. ..+.++++||+|+.. ...+...
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccCchhHHHHH
Confidence 4588999999764332 234689999999998654321111110 11 236688889999754 2222223
Q ss_pred HHHHHHH----------cCCCEEEeccCCCCCHHHHHHHHHHHHH
Q psy11135 130 AQELAEQ----------FNIPFIKTSAKTRMGVDDAFYTLVREIK 164 (191)
Q Consensus 130 ~~~~~~~----------~~~~~~~~s~~~~~~v~~l~~~i~~~~~ 164 (191)
.+.+... +..+++.+|++++.|++++++.|.+.+.
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3334331 2457899999999999999999988764
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.46 E-value=2.4e-12 Score=103.81 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=74.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC--------CC-----CCccC-------CccceEEEEEEEc-----CeEEEEEEEeCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH--------FV-----DEYDP-------TIEDSYRKQVVID-----GETALLDILDTA 59 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~--------~~-----~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~D~~ 59 (191)
+|+++|+.++|||||..+|+... .. .++.+ |.. .....+.+. ...+.+.++|||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~-s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITIT-SAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEE-eeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 69999999999999999986321 10 00000 000 001112222 235779999999
Q ss_pred ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC
Q psy11135 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122 (191)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (191)
||.++.......++-+|++++|+|+...-..... ..++....+ ++|.++++||+|...
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH----TCCEEEEEECSSSTT
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc----CCCeEEEEccccccC
Confidence 9999999999999999999999999874332222 233333332 689999999999743
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=1.9e-12 Score=94.33 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=76.4
Q ss_pred hhhHHHHHHhhcccCCEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc-cC-HHHHHHHHHHc
Q psy11135 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMK-SFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA-VD-MNQAQELAEQF 137 (191)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~ 137 (191)
++++..+...+++++|++++|+|++++. ++..+..|+..+.. .++|.++|+||+|+.+.. +. .++...+++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 4455566667899999999999999986 88888888876654 468999999999997532 12 34456667778
Q ss_pred CCCEEEeccCCCCCHHHHHHHHH
Q psy11135 138 NIPFIKTSAKTRMGVDDAFYTLV 160 (191)
Q Consensus 138 ~~~~~~~s~~~~~~v~~l~~~i~ 160 (191)
+++++++||+++.|++++++.+.
T Consensus 142 g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 142 GYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHhhcc
Confidence 99999999999999999998754
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=8.3e-13 Score=98.81 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=49.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhhHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEEYSA 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~~ 66 (191)
.++|+++|.+|||||||+|++.+... ...++.++.........+++. ...+.+||+||.....+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 57899999999999999999998764 233333333222333334332 23489999999876544
Q ss_pred -------HHHhhcccCCEEEEEEeCCChhh
Q psy11135 67 -------MRDQYMRTGEGFLLVFAVNSMKS 89 (191)
Q Consensus 67 -------~~~~~~~~~~~~i~v~d~~~~~s 89 (191)
....+++.+|++++|+|+.+.++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 34556789999999999976443
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=3.1e-11 Score=90.49 Aligned_cols=84 Identities=21% Similarity=0.260 Sum_probs=57.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCCccceEEEEEEEcCe---------------EEEEEEEeCCChhh--
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TALLDILDTAGQEE-- 63 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~-- 63 (191)
..+++++|++|||||||+|+|.+... ...++.++.........+++. ...+.+||+||...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 46899999999999999999998764 334444444333444455541 13478999999543
Q ss_pred -----HHHHHHhhcccCCEEEEEEeCCC
Q psy11135 64 -----YSAMRDQYMRTGEGFLLVFAVNS 86 (191)
Q Consensus 64 -----~~~~~~~~~~~~~~~i~v~d~~~ 86 (191)
........++.+|++++++|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445678999999999864
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.25 E-value=6.5e-12 Score=85.35 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=68.5
Q ss_pred CChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHH---Hhhc-CCCCCcEEEEEecC-CCCCCccCHHHHHHH
Q psy11135 59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQI---KRVK-DAEEVPMVLVGNKC-DLSTWAVDMNQAQEL 133 (191)
Q Consensus 59 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~-~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 133 (191)
.|+...+.+|..|+.++|++|||+|.+|.+..+ .+..+..+ .... ...+.|++|++||. |+. ...+..+..+.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp-~Ams~~EI~e~ 187 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV-KRMPCFYLAHE 187 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS-CBCCHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc-CCCCHHHHHHH
Confidence 478889999999999999999999999876443 33333222 2211 13578999999996 564 34555554332
Q ss_pred HHH----cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 134 AEQ----FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 134 ~~~----~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
... ..+.+..|||.+|+|+.+.++||.+.+..
T Consensus 188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 211 23458899999999999999999876644
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.19 E-value=2.4e-12 Score=96.34 Aligned_cols=139 Identities=14% Similarity=0.062 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC-----C-C-CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------HH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN-----H-F-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------AM 67 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~ 67 (191)
..+|+++|.+|+|||||+|+|.+. . . ....+.++.... ...++.. +.++||||..... ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999976 2 2 223333333222 2233332 6789999954221 12
Q ss_pred HHhhc--ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135 68 RDQYM--RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 68 ~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (191)
...++ ...++++++++....-.+..+.. ..+....+.|+++++||.|.............+.+..|..+.+.+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCC
Confidence 22222 56788888888743211111111 122334568999999999988755455556677788887777766
Q ss_pred cCCCCC
Q psy11135 146 AKTRMG 151 (191)
Q Consensus 146 ~~~~~~ 151 (191)
+.+..+
T Consensus 312 ~~~~~~ 317 (369)
T 3ec1_A 312 KRYAAE 317 (369)
T ss_dssp GGGTTT
T ss_pred chhhhh
Confidence 655443
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=2.5e-10 Score=85.38 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=74.9
Q ss_pred ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH----HHH
Q psy11135 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE----LAE 135 (191)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~ 135 (191)
..+++..++..+++.++++++|+|++++. ..|...+..+. .+.|+++|+||+|+.+.....+...+ +++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHH
Confidence 45788899999999999999999999853 34555555543 26899999999999875554444433 366
Q ss_pred HcCC---CEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 136 QFNI---PFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 136 ~~~~---~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
..|. +++++||++|.|++++++.|.+..
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 6777 799999999999999999987643
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=82.46 Aligned_cols=106 Identities=10% Similarity=0.046 Sum_probs=72.4
Q ss_pred CCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHH---HHH-hhcCCCCCcEEEEEec-CCCCCCccCHHHHHH
Q psy11135 58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYRE---QIK-RVKDAEEVPMVLVGNK-CDLSTWAVDMNQAQE 132 (191)
Q Consensus 58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~~~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 132 (191)
.+||...+..|..|+.++|++|+|+|.+|.+.++ ....+. .+. ......+.|++|++|| .|+.. ..+..+..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~-Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC-BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC-CCCHHHHHH
Confidence 4578889999999999999999999999977543 222222 222 2111357899999997 47643 445444332
Q ss_pred HHHH----cCCCEEEeccCCCCCHHHHHHHHHHHHHh
Q psy11135 133 LAEQ----FNIPFIKTSAKTRMGVDDAFYTLVREIKK 165 (191)
Q Consensus 133 ~~~~----~~~~~~~~s~~~~~~v~~l~~~i~~~~~~ 165 (191)
.... ..+.+..|||.+|+|+.+.++||.+.+..
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 2111 22458899999999999999999987754
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=4.2e-10 Score=85.04 Aligned_cols=25 Identities=36% Similarity=0.717 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++++|+.|+|||||++.|.+..+
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccc
Confidence 5699999999999999999998753
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.09 E-value=5.7e-12 Score=94.18 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC--------CCCccCCccceEEEEEEEcCeEEEEEEEeCCChhhHH--------H
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHF--------VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS--------A 66 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~ 66 (191)
..+|+++|.+|+|||||+|+|.+... ....+.++... ....+++. +.++||||..... .
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~ 234 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDL--IDIPLDEE---SSLYDTPGIINHHQMAHYVGKQ 234 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CE--EEEESSSS---CEEEECCCBCCTTSGGGGSCHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecce--EEEEecCC---eEEEeCCCcCcHHHHHHHhhHH
Confidence 35799999999999999999997631 12222232222 12233333 6789999953221 1
Q ss_pred HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHHcCCCEEEe
Q psy11135 67 MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKT 144 (191)
Q Consensus 67 ~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (191)
....+ ....+.++++++....-.+..+.. .......+.|+++++||+|.............+.+..|..+.+.
T Consensus 235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~ 309 (368)
T 3h2y_A 235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPP 309 (368)
T ss_dssp HHHHHSCSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSS
T ss_pred HHHHhccccccCceEEEEcCCCEEEEcceEE-----EEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCccCCC
Confidence 22222 345677778877633211111111 12233456899999999999875545555566777788766655
Q ss_pred cc
Q psy11135 145 SA 146 (191)
Q Consensus 145 s~ 146 (191)
++
T Consensus 310 ~~ 311 (368)
T 3h2y_A 310 TP 311 (368)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=2.5e-10 Score=85.35 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=73.6
Q ss_pred ChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHH----HHH
Q psy11135 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQE----LAE 135 (191)
Q Consensus 60 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~ 135 (191)
.++++..++..++..++++++|+|++++.+ .|...+..+. .+.|+++|+||+|+.+.....+...+ +++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHH
Confidence 477899999999999999999999999763 3333344432 26899999999999875544444433 356
Q ss_pred HcCC---CEEEeccCCCCCHHHHHHHHHHHH
Q psy11135 136 QFNI---PFIKTSAKTRMGVDDAFYTLVREI 163 (191)
Q Consensus 136 ~~~~---~~~~~s~~~~~~v~~l~~~i~~~~ 163 (191)
..|. +++.+||++|.|++++++.|.+..
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 6676 689999999999999999987654
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=3.9e-10 Score=87.17 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=84.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH------hCCC--CC--CccCCcc-------c--eEEEEE--E--------------Ec
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLI------QNHF--VD--EYDPTIE-------D--SYRKQV--V--------------ID 47 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~------~~~~--~~--~~~~~~~-------~--~~~~~~--~--------------~~ 47 (191)
...|+++|.+||||||++++|. +... .. .+.+... . ...... . ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999998 3331 11 1111100 0 000000 0 00
Q ss_pred CeEEEEEEEeCCChhhHH-HH---HHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcE-EEEEecCCC
Q psy11135 48 GETALLDILDTAGQEEYS-AM---RDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM-VLVGNKCDL 120 (191)
Q Consensus 48 ~~~~~~~~~D~~g~~~~~-~~---~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 120 (191)
...+.+.|+||||..... .. .... ...+|.+++|+|....... ......+.. ..|+ .+|+||+|.
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~-----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD-----KVDVASVIVTKLDG 252 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH-----HHCCCCEEEECTTS
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh-----hcCceEEEEeCCcc
Confidence 023458899999965321 11 1111 2268999999999774331 122222322 1464 899999998
Q ss_pred CCCccCHHHHHHHHHHcCCCE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy11135 121 STWAVDMNQAQELAEQFNIPF------------------IKTSAKTRMG-VDDAFYTLVRE 162 (191)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~l~~~i~~~ 162 (191)
.... . .+.......+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~-g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKG-G--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCC-T--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccch-H--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 7422 1 1223444555554 3368888888 98888887665
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.99 E-value=1.9e-08 Score=75.98 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC------ccCCccceEEEEEEEcCeEEEEEEEeCCChhh----HHHHHHh-hc
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE------YDPTIEDSYRKQVVIDGETALLDILDTAGQEE----YSAMRDQ-YM 72 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~-~~ 72 (191)
..++++|++|+|||||+|.+.+...+.. ...++.. ..... ......+.++|++|... ....... .+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~--~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME--RHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC--CEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee--EEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 4789999999999999999998442111 1111111 11111 11111367899998542 2222222 23
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCC--------CccCHHHH----HHHH----HH
Q psy11135 73 RTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST--------WAVDMNQA----QELA----EQ 136 (191)
Q Consensus 73 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~----~~~~----~~ 136 (191)
...+..++ ++...... .-..+...+.. .+.|+++|.||.|+.- .....++. .++. .+
T Consensus 147 ~~~~~~~~-lS~G~~~k--qrv~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 147 YEYDFFII-ISATRFKK--NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp GGCSEEEE-EESSCCCH--HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCccH--HHHHHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 44455554 77763111 11122233333 2579999999998631 11223332 2332 12
Q ss_pred cC---CCEEEecc--CCCCCHHHHHHHHHHHHHhhhhh
Q psy11135 137 FN---IPFIKTSA--KTRMGVDDAFYTLVREIKKDKML 169 (191)
Q Consensus 137 ~~---~~~~~~s~--~~~~~v~~l~~~i~~~~~~~~~~ 169 (191)
.| ..++.+|+ .++.|++++.+.+...+.+....
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 22 36788999 56677999999999988776543
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=7.4e-09 Score=74.18 Aligned_cols=25 Identities=36% Similarity=0.765 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
+++++++|+.|+|||||++.|++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999998754
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=6.7e-09 Score=74.87 Aligned_cols=102 Identities=14% Similarity=0.044 Sum_probs=70.5
Q ss_pred EEeCCChh-hHHHHHHhhcccCCEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHH
Q psy11135 55 ILDTAGQE-EYSAMRDQYMRTGEGFLLVFAVNSMKSFE--DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQ 131 (191)
Q Consensus 55 ~~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 131 (191)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..+ . .+.|.++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l--~~kp~ilVlNK~DL~~~~-~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------L--KNKPRIMLLNKADKADAA-VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------C--SSSCEEEEEECGGGSCHH-HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------H--CCCCEEEEEECcccCCHH-HHHHHH
Confidence 34578876 44556666789999999999999977653 22222 1 368999999999997521 112223
Q ss_pred HHHHHcCCCEEEeccCCCCCHHHHHHHHHHHHHhh
Q psy11135 132 ELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166 (191)
Q Consensus 132 ~~~~~~~~~~~~~s~~~~~~v~~l~~~i~~~~~~~ 166 (191)
++.+..+++++++|+.++.|++++++.+.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44555678999999999999999999988877643
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.75 E-value=9.4e-09 Score=74.10 Aligned_cols=55 Identities=25% Similarity=0.416 Sum_probs=34.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCCccceEEEEEEEcCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 62 (191)
.++|+++|.+|+|||||+|++.+.... ...+.++.... .... +.. +.++||||..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~--~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKE--LELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTT--EEEEECCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCC--EEEEECcCcC
Confidence 578999999999999999999987632 22222332221 1222 223 6789999954
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.72 E-value=3.3e-08 Score=75.08 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=51.5
Q ss_pred EEEEEEeCCChhhH-----HHHHH-hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEY-----SAMRD-QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~-----~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.++||||.... ..+.. .....+|.+++|.|......- ......+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~-- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA-- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc--
Confidence 55789999994321 11111 112357889999998764332 2222333331 235679999999864
Q ss_pred cCHHHHHHHHHHcCCCEEEecc
Q psy11135 125 VDMNQAQELAEQFNIPFIKTSA 146 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s~ 146 (191)
....+..+....+.|+.+++.
T Consensus 254 -~gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 254 -KGGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp -SHHHHHHHHHTTCCCEEEEEC
T ss_pred -cccHHHHHHHHHCCCEEEEEc
Confidence 233445566678888887774
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.66 E-value=1.1e-08 Score=72.91 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC--CccCCccceEEEEEEEcCeEEEEEEEeCCChhh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETALLDILDTAGQEE 63 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 63 (191)
++++++|.+|+|||||+|++.+..... ...+++.... ....+ . .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~--~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE-N--GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT-T--SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC-C--CEEEEECCCccc
Confidence 489999999999999999999877432 2222222111 11222 2 368899999653
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.58 E-value=4.9e-08 Score=76.78 Aligned_cols=60 Identities=22% Similarity=0.152 Sum_probs=37.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEEEEE----EE-cCeEEEEEEEeCCChh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----VI-DGETALLDILDTAGQE 62 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~D~~g~~ 62 (191)
.++|+|+|.+|+|||||+|+|.+....-...+++........ .. ......+.++||||..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 478999999999999999999987632122222221111111 11 1122347889999954
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.43 E-value=4.6e-07 Score=69.03 Aligned_cols=83 Identities=20% Similarity=0.142 Sum_probs=47.8
Q ss_pred EEEEEEeCCChhhHHH----HHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCC-c-EEEEEecCCCCC
Q psy11135 51 ALLDILDTAGQEEYSA----MRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEV-P-MVLVGNKCDLST 122 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~----~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~ 122 (191)
+.+.++||||....+. ..... ...+|.++++.|...... .......+.. .. | ..+|+||+|...
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFKE-----AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHHT-----TSCSCEEEEEECSSSCS
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHhh-----cccCCeEEEEeCCCCcc
Confidence 4578999999654221 11111 235889999999865432 1122222221 24 5 899999999754
Q ss_pred CccCHHHHHHHHHHcCCCEEEe
Q psy11135 123 WAVDMNQAQELAEQFNIPFIKT 144 (191)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~ 144 (191)
. ...+..+....+.|+.++
T Consensus 253 ~---~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 253 K---GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp T---THHHHHHHHHSSCCEEEE
T ss_pred c---hHHHHHHHHHHCCCEEEe
Confidence 2 122334666777776554
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.43 E-value=8.7e-08 Score=72.76 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=54.0
Q ss_pred EEEEEEEeCCChhh------HHHHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCC
Q psy11135 50 TALLDILDTAGQEE------YSAMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121 (191)
Q Consensus 50 ~~~~~~~D~~g~~~------~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 121 (191)
.+.+.++||||... ........ ....+.+++|.|....... ......+... -.+..+|+||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA----SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH----CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc----cCCcEEEEeccccc
Confidence 34577899999433 11111111 1246889999998764332 2233333332 13678999999976
Q ss_pred CCccCHHHHHHHHHHcCCCEEEeccCCCCCH
Q psy11135 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGV 152 (191)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v 152 (191)
. ....+.......+.|+.+++. |+++
T Consensus 252 a---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 A---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp S---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred c---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 4 334455666678899888775 5544
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.38 E-value=1.5e-06 Score=63.10 Aligned_cols=92 Identities=14% Similarity=0.069 Sum_probs=56.0
Q ss_pred EEEEEEEeCCChhh--HHH-HHH-----hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCC
Q psy11135 50 TALLDILDTAGQEE--YSA-MRD-----QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDL 120 (191)
Q Consensus 50 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 120 (191)
.+.+.++||||... ... ... .....+|.++++.|...... .......+.. ..+ ..+|+||.|.
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMDG 251 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCCC
Confidence 34578999999765 322 111 12346889999998864321 2222222322 245 7889999997
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 154 (191)
.. ....+..+....+.|+.+++ .|+++++
T Consensus 252 ~~---~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 252 TA---KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp CT---THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred Cc---chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 54 23445567788889988876 4555543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.36 E-value=1.9e-07 Score=66.55 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=61.1
Q ss_pred CCChhh-HHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccCHHHHHHHHHH
Q psy11135 58 TAGQEE-YSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQ 136 (191)
Q Consensus 58 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 136 (191)
.|||.. ........+.++|+++.|+|+.++.+.... . +. +. +.|.++|+||+|+.+... .+...++.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~---l~-ll---~k~~iivlNK~DL~~~~~-~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G---VD-FS---RKETIILLNKVDIADEKT-TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T---SC-CT---TSEEEEEEECGGGSCHHH-HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H---HH-hc---CCCcEEEEECccCCCHHH-HHHHHHHHHH
Confidence 467663 233455668899999999999987654321 0 11 11 689999999999975211 1222344556
Q ss_pred cCCCEEEeccCCCCCHHHHHHHHHH
Q psy11135 137 FNIPFIKTSAKTRMGVDDAFYTLVR 161 (191)
Q Consensus 137 ~~~~~~~~s~~~~~~v~~l~~~i~~ 161 (191)
.|.++ .+|+.++.|++++++.+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 68888 9999999999999887644
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.35 E-value=1.7e-06 Score=68.85 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~ 28 (191)
.|+|+|+.|||||||++.+.+...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-
T ss_pred eEEEECCCCChHHHHHHHHhCCCC
Confidence 389999999999999999998653
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.23 E-value=4e-07 Score=66.19 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=58.8
Q ss_pred HHhhcccCCEEEEEEeCCChhh-HHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCcc---CHHHHHHHHHHcCCCEEE
Q psy11135 68 RDQYMRTGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV---DMNQAQELAEQFNIPFIK 143 (191)
Q Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~ 143 (191)
.....+++|.+++|+|+.++.. ...+..++ ......++|.++|+||+|+.+... ..+....+....|.+++.
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L----~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~ 155 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTALLDRFL----VLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL 155 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHHHHHHHH----HHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHHHHHHHH----HHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence 3456889999999999987654 33333333 222334789999999999986432 123344555567899999
Q ss_pred eccCCCCCHHHHHH
Q psy11135 144 TSAKTRMGVDDAFY 157 (191)
Q Consensus 144 ~s~~~~~~v~~l~~ 157 (191)
+|+.++.|+++++.
T Consensus 156 ~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 156 TSSKDQDSLADIIP 169 (307)
T ss_dssp CCHHHHTTCTTTGG
T ss_pred EecCCCCCHHHHHh
Confidence 99998888776554
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.14 E-value=1.2e-05 Score=59.67 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=55.3
Q ss_pred hcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC--HHHHHHHHHHcCCCEEEeccCC
Q psy11135 71 YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQAQELAEQFNIPFIKTSAKT 148 (191)
Q Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~ 148 (191)
..+++|.+++|.+..-..+...+..++..... .++|.++|+||+|+.+.... .+.........|++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988775432233334444333222 25788999999999763210 1122334456789999999999
Q ss_pred CCCHHHHHHH
Q psy11135 149 RMGVDDAFYT 158 (191)
Q Consensus 149 ~~~v~~l~~~ 158 (191)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999888764
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=5.5e-06 Score=60.88 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=51.0
Q ss_pred EEEEeCCChhhHH----HHHHhh--cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCccC
Q psy11135 53 LDILDTAGQEEYS----AMRDQY--MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126 (191)
Q Consensus 53 ~~~~D~~g~~~~~----~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 126 (191)
+.++|++|..... ...... .-..|..+++.|..... .+......+.... ....+++||.|... .
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~----~it~iilTKlD~~a---~ 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV----KIDGIILTKLDADA---R 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS----CCCEEEEECGGGCS---C
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc----CCCEEEEeCcCCcc---c
Confidence 5579999953211 111111 12367888889875543 2333333333221 23488899999743 2
Q ss_pred HHHHHHHHHHcCCCEEEeccCCCCCHHH
Q psy11135 127 MNQAQELAEQFNIPFIKTSAKTRMGVDD 154 (191)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~ 154 (191)
...+..+....+.|+.+++ +|+++++
T Consensus 284 ~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2335567777889988877 5555543
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.99 E-value=8.4e-07 Score=68.48 Aligned_cols=96 Identities=14% Similarity=0.124 Sum_probs=54.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCCccceEE---EEEEEcCeEEEEEEEeCCChhh--HHHHH--------H
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR---KQVVIDGETALLDILDTAGQEE--YSAMR--------D 69 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 69 (191)
.+.|+++|.+|+||||+.++|......... ++. .+. ......+......+||..|... ....+ .
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~-~t~--~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV-PTR--EFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEE--EEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC-Cce--EEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999754311100 000 000 0000011112245799998732 22222 4
Q ss_pred hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy11135 70 QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR 102 (191)
Q Consensus 70 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 102 (191)
.++...++.++++|.++.. ......|...+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~~-~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTT-RERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCCS-HHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCC-HHHHHHHHHHHHh
Confidence 4555678888999999873 4444455444443
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.93 E-value=2.1e-05 Score=60.00 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.-|.|+|++++|||||+|.+++.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 34789999999999999999864
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.76 E-value=1.9e-05 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997653
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.72 E-value=0.00025 Score=54.07 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=46.0
Q ss_pred EEEEEEEeCCChhhHHH-HHH-----hhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCc-EEEEEecCCCCC
Q psy11135 50 TALLDILDTAGQEEYSA-MRD-----QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP-MVLVGNKCDLST 122 (191)
Q Consensus 50 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 122 (191)
.+.+.++||||...... ... ......+.+++|.|...... .......+.. ..+ .-+|+||.|...
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCCc
Confidence 34588999999543211 111 11336788889999865432 2222222322 133 357999999754
Q ss_pred CccCHHHHHHHHHHcCCCEEEe
Q psy11135 123 WAVDMNQAQELAEQFNIPFIKT 144 (191)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~ 144 (191)
.. ..+..+....+.|+.++
T Consensus 255 ~~---g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 255 RG---GAALSIRHITGKPIKFL 273 (433)
T ss_dssp CC---THHHHHHHHHCCCEEEE
T ss_pred cH---HHHHHHHHHHCCCeEEE
Confidence 22 23445666667664443
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.68 E-value=1.6e-05 Score=54.19 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=54.9
Q ss_pred EEEEEEeCCChhhHHHHHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCCcEEEEEecCCCCCCccCHHH
Q psy11135 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDLSTWAVDMNQ 129 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~ 129 (191)
+.+.++|+|+.. .......+..+|.++++...+... ..+...+..+..... .+..++.+|+|+.|.... ..++
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~~~~ 149 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--MLNV 149 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--EEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--HHHH
Confidence 567899999865 334445566799999988876654 556666666654321 235677999999985431 2234
Q ss_pred HHHHHHHcCCCEE
Q psy11135 130 AQELAEQFNIPFI 142 (191)
Q Consensus 130 ~~~~~~~~~~~~~ 142 (191)
..+..+.++.+++
T Consensus 150 ~~~~l~~~~~~vl 162 (206)
T 4dzz_A 150 LKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHTCCBC
T ss_pred HHHHHHHcCCcee
Confidence 4555555666554
No 239
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.67 E-value=1.3e-05 Score=58.32 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 57899999999999999998654
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.66 E-value=2.9e-05 Score=51.99 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999864
No 241
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.62 E-value=3.6e-05 Score=52.43 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|+.|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999863
No 242
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.57 E-value=5e-05 Score=51.09 Aligned_cols=25 Identities=28% Similarity=0.423 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+...|++.|.+||||||+.+.|..
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 6667899999999999999999864
No 243
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=6.3e-05 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=21.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+...|++.|.+||||||+.+.|..
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 6778899999999999999998864
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.55 E-value=0.00024 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 46899999999999999998 54
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.53 E-value=5.5e-05 Score=50.90 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
++++|+.|||||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999854
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.53 E-value=5.6e-05 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|+++|+.|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999864
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.52 E-value=5.3e-05 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.|+++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35889999999999999999875
No 248
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.52 E-value=8e-05 Score=50.91 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.4
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+...|++.|.+||||||+.+.|..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 5667899999999999999999875
No 249
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.49 E-value=6.7e-05 Score=51.37 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+..
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998653
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.48 E-value=7e-05 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-++++|+.|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 46899999999999999998654
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.47 E-value=9.5e-05 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.1
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
|...-|++.|.+||||||+.+.|...
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44557899999999999999999763
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.46 E-value=7.5e-05 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999998743
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=9.8e-05 Score=50.58 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
...|+++|++|||||||++.|.+..
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999987643
No 254
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.43 E-value=9.5e-05 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-|+++|++||||||+++.|.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999998654
No 255
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.42 E-value=0.00012 Score=49.68 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
--|+++|++|||||||++.|.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35789999999999999999854
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.41 E-value=0.0001 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998755
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.41 E-value=0.0001 Score=49.59 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.41 E-value=0.00014 Score=48.68 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.39 E-value=0.00011 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.39 E-value=0.00013 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998754
No 261
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.38 E-value=0.00011 Score=50.14 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.-|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999754
No 262
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.37 E-value=0.00015 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
.-.|+++|++||||||+++.+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999865
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.37 E-value=0.00012 Score=49.28 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 264
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.36 E-value=0.00017 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.34 E-value=0.00011 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998754
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.34 E-value=0.00013 Score=48.13 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998644
No 267
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.33 E-value=0.00011 Score=48.79 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=16.9
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy11135 6 LVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (191)
++++|++|||||||++.+.
T Consensus 12 ~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEECCTTSCHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6899999999999999643
No 268
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.00013 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy11135 4 YKLVVVGAGGVGKSALTIQL 23 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l 23 (191)
.-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.00015 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.33 E-value=0.00014 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.|+++|++||||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999998653
No 271
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.33 E-value=0.00016 Score=50.10 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 272
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.33 E-value=0.00012 Score=54.32 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~~ 28 (191)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 478999999999999999997653
No 273
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.32 E-value=0.00017 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
...|+++|+.|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998763
No 274
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.31 E-value=0.00016 Score=49.73 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.29 E-value=0.00016 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998764
No 276
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.29 E-value=0.00013 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999997754
No 277
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.28 E-value=0.00018 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~ 24 (191)
-.|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 278
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.28 E-value=0.00016 Score=48.83 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998754
No 279
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.26 E-value=0.00022 Score=47.83 Aligned_cols=24 Identities=17% Similarity=0.473 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
...|+++|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999998765
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.26 E-value=0.00024 Score=48.27 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
+...|++.|.+||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999765
No 281
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.25 E-value=0.00018 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 4789999999999999998763
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.00021 Score=48.50 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 283
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.25 E-value=0.00021 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
++|+++|+|||||+|....|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 284
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.25 E-value=0.00017 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|+|||||++.+.+-.
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998764
No 285
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.25 E-value=0.00016 Score=48.27 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.+++.|++|+|||||++.+.+.-
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987543
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.00019 Score=48.79 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|+++|.+||||||+.+.|...
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998654
No 287
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.24 E-value=0.00025 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.4
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+.++|+++|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 288
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.24 E-value=0.00017 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998754
No 289
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.24 E-value=0.00016 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999997754
No 290
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.23 E-value=0.00021 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
.+|+++|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999977
No 291
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.23 E-value=0.00017 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999998754
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.23 E-value=0.00027 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.23 E-value=0.00023 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.639 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.22 E-value=0.00021 Score=48.54 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
--|+++|++||||||+++.+.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998654
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.22 E-value=0.00023 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-++++|++|+|||||++++.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999999864
No 296
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.22 E-value=0.00013 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=16.6
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+...|++.|.+||||||+.+.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999864
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.21 E-value=0.00022 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5789999999999999998754
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.21 E-value=0.00017 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 299
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.20 E-value=0.00027 Score=47.46 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|++.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 300
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.20 E-value=0.00019 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998764
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.20 E-value=0.00029 Score=47.86 Aligned_cols=24 Identities=21% Similarity=0.591 Sum_probs=21.0
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+.+.|++.|.+||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 302
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.20 E-value=0.00019 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998765
No 303
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.20 E-value=0.00033 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
+...|++.|.+|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998643
No 304
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.20 E-value=0.00022 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.19 E-value=0.0002 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 36899999999999999998754
No 306
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.19 E-value=0.00019 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998754
No 307
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.19 E-value=0.00023 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999886
No 308
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.19 E-value=0.00022 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.19 E-value=0.00024 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
++|++.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.19 E-value=0.00028 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|+++|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 311
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.18 E-value=0.00021 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998764
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.18 E-value=0.0003 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 313
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.17 E-value=0.00025 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 46899999999999999998765
No 314
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.17 E-value=0.00021 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998764
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.17 E-value=0.00026 Score=46.96 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 316
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.17 E-value=0.00025 Score=50.59 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999886
No 317
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.16 E-value=0.00022 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998764
No 318
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00026 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
.-.|++.|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34689999999999999999874
No 319
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.14 E-value=0.00026 Score=50.31 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999998753
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.14 E-value=0.00028 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.-|+++|+.|||||||++.+.+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 468999999999999999987643
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.14 E-value=0.00033 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 322
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.13 E-value=0.00024 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 323
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00034 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
-.|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.12 E-value=0.00034 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
..-|++.|++||||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999974
No 325
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.12 E-value=0.00028 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998764
No 326
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.12 E-value=0.00031 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 327
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.11 E-value=0.00033 Score=48.60 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 328
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.11 E-value=0.00026 Score=50.06 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998764
No 329
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.11 E-value=0.00017 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH-hC
Q psy11135 5 KLVVVGAGGVGKSALTIQLI-QN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~-~~ 26 (191)
-|+++|+.||||||+++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998 54
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.10 E-value=0.00038 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.10 E-value=0.00031 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998744
No 332
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.09 E-value=0.00027 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999998754
No 333
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.09 E-value=0.00033 Score=49.09 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=17.7
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy11135 6 LVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (191)
++++|++|||||||++.+.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999999887
No 334
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.09 E-value=0.00034 Score=46.74 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 335
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00049 Score=46.63 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=22.2
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
+...|++.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999865
No 336
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.08 E-value=0.0004 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999874
No 337
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.07 E-value=0.00025 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998644
No 338
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.07 E-value=0.00017 Score=47.91 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|++|||||||++.+.+.-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997654
No 339
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.07 E-value=0.00035 Score=50.01 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
+++.|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999999864
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.07 E-value=0.00044 Score=47.17 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
...|+++|++|+||||+++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999764
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.06 E-value=0.00035 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 342
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.05 E-value=0.00048 Score=48.38 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
...|+++|+.|||||||++.+.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998763
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00034 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 344
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.05 E-value=0.00043 Score=47.92 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 345
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.05 E-value=0.00037 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|+++|+.||||||+++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998753
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.04 E-value=0.00032 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-+++++|+.|+|||||++.|.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998754
No 347
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.03 E-value=0.00043 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
.+.|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999854
No 348
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.02 E-value=0.00037 Score=51.73 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++|+.|||||||++.+.+-..
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCchHHHHHHHHhcCCC
Confidence 68999999999999999988653
No 349
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.01 E-value=0.00045 Score=48.17 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+.+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 350
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.00 E-value=0.00056 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+-|+++|++|||||||++.+.+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988643
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.00 E-value=0.00064 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=20.7
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999865
No 352
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.00 E-value=0.00046 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|++|+|||||++.+.+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999998643
No 353
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.99 E-value=0.00055 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
.+.|++.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999975
No 354
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.99 E-value=0.00049 Score=48.67 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-|+++|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 355
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.98 E-value=0.00045 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6899999999999999998765
No 356
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.97 E-value=0.00066 Score=46.10 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|++.|.+||||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999864
No 357
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.97 E-value=0.00027 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 57899999999999999997654
No 358
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00041 Score=49.01 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|+++|++||||||+.+.|..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.97 E-value=0.00057 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+.++|++|+|||||+.++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999998753
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.96 E-value=0.00065 Score=46.20 Aligned_cols=22 Identities=36% Similarity=0.370 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
.-|+++|+.|+||||+++.+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999875
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.96 E-value=0.00058 Score=46.04 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00057 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 363
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.96 E-value=0.00045 Score=49.87 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 364
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.96 E-value=0.00048 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 6899999999999999998765
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.96 E-value=0.00051 Score=49.93 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=46.0
Q ss_pred EEEEeCCChhhH-----HH-------HHHhhcccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCC
Q psy11135 53 LDILDTAGQEEY-----SA-------MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120 (191)
Q Consensus 53 ~~~~D~~g~~~~-----~~-------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (191)
..++|++|.... .. +........+.++++.|...... +...+..+.... -..++++||.|.
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~----~~t~iivTh~d~ 259 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV----GLTGVIVTKLDG 259 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH----CCSEEEEECTTS
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc----CCcEEEEECCcc
Confidence 567899994321 11 11122344677788888766432 223333333211 135788999986
Q ss_pred CCCccCHHHHHHHHHHcCCCEEEec
Q psy11135 121 STWAVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~s 145 (191)
... ...+..+....+.|+.+++
T Consensus 260 ~a~---gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 TAK---GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp SCC---CTTHHHHHHHHCCCEEEEE
T ss_pred ccc---ccHHHHHHHHHCCCeEEEe
Confidence 532 2234456677888877765
No 366
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.95 E-value=0.0005 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 6899999999999999998765
No 367
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.95 E-value=0.00069 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|++|||||||++.|.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988754
No 368
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.95 E-value=0.00051 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 68999999999999999987653
No 369
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.95 E-value=0.00051 Score=51.08 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 6899999999999999998765
No 370
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.93 E-value=0.00066 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 371
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.93 E-value=0.00074 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 372
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.00053 Score=51.32 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|+++|+.||||||+++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999763
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.92 E-value=0.00062 Score=48.07 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy11135 4 YKLVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~ 24 (191)
..|+++|+.||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 374
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.00063 Score=45.33 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 375
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.91 E-value=0.00056 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 6899999999999999998765
No 376
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.91 E-value=0.00055 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++|+.|||||||++.+.+-..
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCcHHHHHHHHHHcCCC
Confidence 68999999999999999987653
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.90 E-value=0.00068 Score=44.69 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 378
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.90 E-value=0.00052 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998754
No 379
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.0007 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 380
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.90 E-value=0.00074 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
..|+++|+.|||||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998764
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.89 E-value=0.00087 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.89 E-value=0.00068 Score=46.77 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (191)
|+++|+|||||+|....|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46789999999999998864
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.89 E-value=0.00064 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-++++|+.||||||+++.+.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999864
No 384
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.89 E-value=0.00023 Score=48.76 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999998643
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.87 E-value=0.00049 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 386
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.87 E-value=0.00064 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-|+|+|+.||||||+++.+.+..
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998643
No 387
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.86 E-value=0.00065 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=21.0
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+.+.|++.|.+||||||+.+.|..
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 6778899999999999999998865
No 388
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.85 E-value=0.00071 Score=48.40 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|++|+|||||++.+.+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998643
No 389
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00068 Score=49.94 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.+++.|++|+|||||++.+.+.-
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 37899999999999999997643
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.84 E-value=0.00093 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+. .|++.|.+||||||+.+.|..
T Consensus 1 m~~-~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 1 MRG-IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp CCS-EEEEECSTTSSHHHHHHHHHH
T ss_pred CCe-EEEEECCCCCCHHHHHHHHHH
Confidence 555 689999999999999998864
No 391
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.81 E-value=0.00046 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+-.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 6899999999999999998765
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.81 E-value=0.0009 Score=43.97 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998854
No 393
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.79 E-value=0.00075 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 36899999999999999998743
No 394
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.78 E-value=0.00088 Score=46.27 Aligned_cols=21 Identities=24% Similarity=0.650 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
++++|++|+|||||+..+.+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 688999999999999998743
No 395
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.78 E-value=0.0012 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+ ..|++.|.+||||||+.+.|..
T Consensus 1 M~-~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MK-KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CC-EEEEEECCTTSSHHHHHHHHHH
T ss_pred CC-eEEEEECCCCCCHHHHHHHHHH
Confidence 44 4589999999999999999975
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.0013 Score=45.81 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
..-|++.|++||||||+++.|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 397
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.77 E-value=0.00074 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.||||||+++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998654
No 398
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.77 E-value=0.00054 Score=47.65 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.-|++.|+.||||||+++.+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999998765
No 399
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.77 E-value=0.001 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
.+.|++.|.+||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 400
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.75 E-value=0.00095 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.75 E-value=0.00098 Score=44.39 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (191)
.+++|+.|+|||||+.++..
T Consensus 29 ~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999864
No 402
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.74 E-value=0.0011 Score=47.69 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~ 24 (191)
.+.|+|.|.+||||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999986
No 403
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.73 E-value=0.00071 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|+.|||||||++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 4789999999999999999653
No 404
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.70 E-value=0.0011 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-.+++.|++|+|||+|+..+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987543
No 405
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.70 E-value=0.001 Score=46.94 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 406
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.69 E-value=0.0015 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
.-|++.|.+|+||||+.+.|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998864
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.69 E-value=0.00046 Score=51.23 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++|+.|||||||++.+.+-..
T Consensus 34 ~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 68999999999999999987653
No 408
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.69 E-value=0.00092 Score=44.36 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988654
No 409
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.69 E-value=0.0011 Score=45.87 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.+++.|++|+|||++++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988653
No 410
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.68 E-value=0.0011 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-|+++|+.||||||+++.+.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHh
Confidence 588999999999999999864
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00092 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|||||||++.+.+-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 57899999999999999997653
No 412
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.67 E-value=0.0011 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
++++|++|+|||||+..+.+..
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987543
No 413
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.66 E-value=0.0014 Score=44.26 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-+.|+++|..||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 367999999999999999998654
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.0012 Score=51.01 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=45.5
Q ss_pred EEEEEeCCChhhHHH----HHHhh--------cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCC
Q psy11135 52 LLDILDTAGQEEYSA----MRDQY--------MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119 (191)
Q Consensus 52 ~~~~~D~~g~~~~~~----~~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 119 (191)
.+.++||+|...... ..... ....+-++++.|.+.... .....+.+.... + ...+|+||.|
T Consensus 377 DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~---~-itgvIlTKLD 449 (503)
T 2yhs_A 377 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV---G-LTGITLTKLD 449 (503)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT---C-CSEEEEECGG
T ss_pred CEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc---C-CCEEEEEcCC
Confidence 467899999532111 11111 112556788888765321 122233333321 1 3467899999
Q ss_pred CCCCccCHHHHHHHHHHcCCCEEEec
Q psy11135 120 LSTWAVDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (191)
... ....+..+...++.++.++.
T Consensus 450 ~ta---kgG~~lsi~~~~~~PI~fig 472 (503)
T 2yhs_A 450 GTA---KGGVIFSVADQFGIPIRYIG 472 (503)
T ss_dssp GCS---CCTHHHHHHHHHCCCEEEEE
T ss_pred Ccc---cccHHHHHHHHHCCCEEEEe
Confidence 632 23345667777888887755
No 415
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.61 E-value=0.0019 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+..-|++.|.+||||||+++.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5667799999999999999999854
No 416
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.60 E-value=0.0014 Score=44.85 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999987
No 417
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0068 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999764
No 418
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.59 E-value=0.0014 Score=49.09 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.+++.|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999985
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0015 Score=45.46 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999999874
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.58 E-value=0.0015 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999998765
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.58 E-value=0.002 Score=46.83 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
|+..-|+++|++|||||+|...+...
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHh
Confidence 56667899999999999999999754
No 422
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.57 E-value=0.0017 Score=41.67 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
..|++.|++|+|||++.+.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997654
No 423
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.55 E-value=0.0074 Score=44.99 Aligned_cols=19 Identities=42% Similarity=0.538 Sum_probs=17.3
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy11135 6 LVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (191)
.+++|+.|+|||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4689999999999999986
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.55 E-value=0.0017 Score=41.91 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy11135 6 LVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (191)
.+++|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3688999999999999975
No 425
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.54 E-value=0.0041 Score=47.48 Aligned_cols=20 Identities=35% Similarity=0.290 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy11135 5 KLVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~ 24 (191)
-|.|+|..++|||+|+|.++
T Consensus 69 vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 69 AVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCchhHHHHHHH
Confidence 46699999999999999664
No 426
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.51 E-value=0.0016 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.+++.|++|+|||++++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 427
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0021 Score=44.74 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+...|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 428
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.50 E-value=0.0013 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 429
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.49 E-value=0.0017 Score=46.42 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++++...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999754
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.49 E-value=0.0017 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-++++|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999999875
No 431
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.49 E-value=0.0019 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++|+|||++++.+...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 432
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.0019 Score=43.95 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
+++.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998754
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.47 E-value=0.0019 Score=44.59 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 434
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.45 E-value=0.0019 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++|+|||++++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 4899999999999999999764
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.44 E-value=0.0019 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.-+++.|+||+|||+|++++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677899999999999998754
No 436
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.42 E-value=0.0028 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998865
No 437
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.41 E-value=0.0022 Score=43.51 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
...|+++|++|+|||+|...|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999997654
No 438
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.41 E-value=0.0023 Score=46.74 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|+++|++|||||||...|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.40 E-value=0.0022 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
+++++|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999998765
No 440
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.38 E-value=0.0022 Score=46.90 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||+|++.+.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998754
No 441
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.37 E-value=0.0027 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
++..++|++||||||+...|..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 6889999999999999998854
No 442
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.36 E-value=0.0019 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 57899999999999999997754
No 443
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.35 E-value=0.0027 Score=44.39 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=20.9
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+..-|++.|.+||||||+++.+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556799999999999999999864
No 444
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.32 E-value=0.0023 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0033 Score=43.92 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999998754
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.0031 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 37899999999999999998765
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.31 E-value=0.0025 Score=45.62 Aligned_cols=21 Identities=43% Similarity=0.597 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999998875
No 448
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.31 E-value=0.0025 Score=46.14 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=47.6
Q ss_pred EEEEEEeCCChhhHHH--H--HHhhcc--cCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecCCCCCCc
Q psy11135 51 ALLDILDTAGQEEYSA--M--RDQYMR--TGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWA 124 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~--~--~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 124 (191)
+.+.++||+|...... + ....+. ..+.++++++.+.. ...+..+...+. .-+ ..-+|.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~-~~giVltk~D~~~~- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SVP-VNQYIFTKIDETTS- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SSC-CCEEEEECTTTCSC-
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cCC-CCEEEEeCCCcccc-
Confidence 4578999999654321 1 112232 35677888887653 223333322221 111 34567799997642
Q ss_pred cCHHHHHHHHHHcCCCEEEec
Q psy11135 125 VDMNQAQELAEQFNIPFIKTS 145 (191)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~s 145 (191)
...+.......+.|+.+++
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355667778888876654
No 449
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.011 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|++.|+||+|||+|++++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 5899999999999999999764
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.29 E-value=0.0023 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.-|+++|.+||||||+.+++...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999998754
No 451
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.29 E-value=0.0032 Score=43.30 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.2
Q ss_pred CCeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 1 MAEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 1 ~~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
|+..-|++.|.+||||||.++.+..
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5667799999999999999998864
No 452
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.003 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 36899999999999999998764
No 453
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0028 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|++.|+||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999754
No 454
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.25 E-value=0.0031 Score=45.63 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~ 25 (191)
.+++.|++|+|||++++.+..
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987654
No 455
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.25 E-value=0.0026 Score=44.19 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=17.6
Q ss_pred CeeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 2 AEYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 2 ~~~~i~v~G~~~~GKStli~~l~~ 25 (191)
+..-|++.|.+||||||+++.+..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 456
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.25 E-value=0.003 Score=45.88 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=48.6
Q ss_pred EEEEEEeCCChhhHHH--------HHHhh----cccCCEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCCcEEEEEecC
Q psy11135 51 ALLDILDTAGQEEYSA--------MRDQY----MRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118 (191)
Q Consensus 51 ~~~~~~D~~g~~~~~~--------~~~~~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 118 (191)
+.+.++||||...... ..... ....+.++++.|.... .+.+. ....+... -...-+|+||.
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~----~~i~gvVlTk~ 259 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA----VNVTGIILTKL 259 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH----SCCCEEEEECG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc----CCCCEEEEeCC
Confidence 3478899999532111 11111 1247788888888632 12222 22333321 12345778999
Q ss_pred CCCCCccCHHHHHHHHHHcCCCEEEecc
Q psy11135 119 DLSTWAVDMNQAQELAEQFNIPFIKTSA 146 (191)
Q Consensus 119 D~~~~~~~~~~~~~~~~~~~~~~~~~s~ 146 (191)
|... ....+..+....+.|+.+++.
T Consensus 260 D~~~---~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 260 DGTA---KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GGCS---CTTHHHHHHHHHCCCEEEEEC
T ss_pred CCcc---chHHHHHHHHHHCCCEEEEeC
Confidence 9653 223467788888988887764
No 457
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.24 E-value=0.0041 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
.-|+++|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 3589999999999999998864
No 458
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.24 E-value=0.0042 Score=44.17 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
.-.+++.|++|+|||++++++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 346899999999999999999764
No 459
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.003 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.|++.|+||+|||+|++++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 460
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.23 E-value=0.0028 Score=47.08 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||||++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 461
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.22 E-value=0.0031 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 462
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.21 E-value=0.0024 Score=47.11 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.20 E-value=0.002 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999998754
No 464
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0052 Score=42.46 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEE--cCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVV--GAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~--G~~~~GKStli~~l~~~~ 27 (191)
||+|+ |.++.||++|++++++..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 56666 999999999999998774
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.0031 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++|+|||+|++++...
T Consensus 47 ~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 5899999999999999999764
No 466
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.0032 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~ 27 (191)
+++.|++|+||||+++.+.+.-
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999987653
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.18 E-value=0.0022 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 57899999999999999997654
No 468
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.17 E-value=0.0034 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6899999999999999998754
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0034 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999865
No 470
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.17 E-value=0.0022 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~~ 26 (191)
...|++.|..||||||+++.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999888654
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.16 E-value=0.0041 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 47899999999999999998765
No 472
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.15 E-value=0.0029 Score=49.67 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998765
No 473
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.14 E-value=0.0035 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.+++.|++|+||||+++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999987643
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.13 E-value=0.0033 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999865
No 475
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.13 E-value=0.0015 Score=41.77 Aligned_cols=22 Identities=9% Similarity=0.144 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
..|++.|++|+|||++++.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCC
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999988854
No 476
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.12 E-value=0.0046 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
.+|+++|++|+||||+.+.+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999987753
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.12 E-value=0.0036 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~ 26 (191)
-.|++.|++|+|||++++++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999754
No 478
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0037 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|++.|+||+|||.|++++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5899999999999999999764
No 479
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.11 E-value=0.0044 Score=41.00 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.-|++.|++|+||||+.-.+....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358999999999999999998743
No 480
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.09 E-value=0.0038 Score=43.49 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy11135 6 LVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~ 25 (191)
+++.|++|+|||||+..+..
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999777653
No 481
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.07 E-value=0.0045 Score=45.01 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~ 25 (191)
-.+++.|++|+|||+|+.++..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.05 E-value=0.0019 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999887654
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.03 E-value=0.0046 Score=45.45 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.0043 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~ 26 (191)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 485
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.02 E-value=0.0041 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-+.++|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998654
No 486
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.02 E-value=0.0047 Score=42.04 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy11135 6 LVVVGAGGVGKSALTIQLI 24 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~ 24 (191)
.+++|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 3688999999999999874
No 487
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.02 E-value=0.0018 Score=45.89 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999753
No 488
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.0041 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy11135 6 LVVVGAGGVGKSALTIQLIQNHF 28 (191)
Q Consensus 6 i~v~G~~~~GKStli~~l~~~~~ 28 (191)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999988653
No 489
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.00 E-value=0.0025 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999987654
No 490
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.99 E-value=0.0043 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.619 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 491
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.004 Score=46.31 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.+++.|++|+|||++++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998753
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.94 E-value=0.0049 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++|+|||+|++++...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999998764
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.94 E-value=0.0024 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=17.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
.+-|++.|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.91 E-value=0.0036 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
..|+++|..|||||||++.|.+.-
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 568999999999999999987654
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.91 E-value=0.0049 Score=47.87 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~~ 27 (191)
-|+++|++|+|||+|++.+.+..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998643
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.91 E-value=0.0052 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
.|++.|++|+|||++++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5899999999999999999654
No 497
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.90 E-value=0.0049 Score=48.49 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-++++|++|+|||||++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999998654
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.90 E-value=0.0059 Score=43.18 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy11135 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (191)
Q Consensus 4 ~~i~v~G~~~~GKStli~~l~~~~ 27 (191)
..|++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 358999999999999999997654
No 499
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.90 E-value=0.005 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy11135 5 KLVVVGAGGVGKSALTIQLIQN 26 (191)
Q Consensus 5 ~i~v~G~~~~GKStli~~l~~~ 26 (191)
-+++.|++|+|||+|++.+.+.
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998753
No 500
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.89 E-value=0.0081 Score=41.54 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q psy11135 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (191)
Q Consensus 3 ~~~i~v~G~~~~GKStli~~l~~ 25 (191)
..-|++.|.+|+||||+++.+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
Done!