RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11135
(191 letters)
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 319 bits (820), Expect = e-113
Identities = 147/189 (77%), Positives = 160/189 (84%), Gaps = 3/189 (1%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
EYKLVVVGA GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAGQE
Sbjct: 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 63
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
EYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+E+VPMVLVGNKCDL +
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGN 182
VD QAQ+LA + IPFI+TSAKTR GVDDAFYTLVREI+K K K+ KK+
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKK---KK 180
Query: 183 KLKQCCVLL 191
K K CV++
Sbjct: 181 KSKTKCVIM 189
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 313 bits (805), Expect = e-111
Identities = 139/168 (82%), Positives = 151/168 (89%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSF DI YREQIKRVKD+++VPMVLVGNKCDL
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
T VD QA ELA+ + IPFI+TSAKTR GV+DAFYTLVREI++ +M
Sbjct: 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM 186
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 310 bits (796), Expect = e-109
Identities = 100/195 (51%), Positives = 141/195 (72%), Gaps = 4/195 (2%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+A +K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAG
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE+Y+A+RD Y R+GEGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKE---KKK 176
V + +A+ AEQ+N+ +++TSAKTR VD F+ L+REI+ KM KE KKK
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGKKK 191
Query: 177 RGISGNKLKQCCVLL 191
R ++++ C +L
Sbjct: 192 RKSLAKRIRERCCIL 206
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 308 bits (791), Expect = e-109
Identities = 134/165 (81%), Positives = 148/165 (89%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKLVVVGAGGVGKSALTIQLIQNHFVDE DPTIEDSYRKQVVIDGET LLDILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEEYSAMRDQYMRTGEGFL VFA+N+ KSFEDI YREQIKRVKD+++VPMVLVGNK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V+ QAQ+LA + IP+I+TSAKTR GV+DAFYTLVREI++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 307 bits (788), Expect = e-108
Identities = 70/192 (36%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+Y++VV GAGGVGKS+L ++ ++ F D Y PTIED+YR+ + D L I DT G
Sbjct: 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSH 67
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDA-EEVPMVLVGNKCDLS 121
++ AM+ + G F+LVF+V S +S E++G + I ++K + E++P++LVGNKCD +
Sbjct: 68 QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127
Query: 122 TWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
VD +AQ +A+++ F++TSAK V + F L+ + M + K+ G
Sbjct: 128 QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRSGKQK 187
Query: 182 --NKLKQCCVLL 191
+++K C L+
Sbjct: 188 RTDRVKGKCTLM 199
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 304 bits (782), Expect = e-107
Identities = 58/176 (32%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ K+V++G VGK++L Q ++ F + YDPT+E++Y K V + + L ++DTAG
Sbjct: 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAG 81
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
Q+EYS + ++ G++LV++V S+ SF+ I S +++ VP+VLVGNK DL
Sbjct: 82 QDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL 141
Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
S V + ++LAE + F+++SA+ F +++EI + + G+E++
Sbjct: 142 SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYGQERR 197
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 301 bits (774), Expect = e-106
Identities = 81/166 (48%), Positives = 127/166 (76%), Gaps = 1/166 (0%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYK+VV+G+GGVGKSALT+Q + F+++YDPTIED YRK++ +D ++L+ILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E++++MRD Y++ G+GF+LV+++ + +SF+DI R+QI RVK E+VP++LVGNK DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ V ++ + LAE++ PF++TSAK++ VD+ F +VR++
Sbjct: 121 ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 301 bits (773), Expect = e-106
Identities = 62/174 (35%), Positives = 101/174 (58%), Gaps = 1/174 (0%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
K+ ++G VGKS+LTIQ ++ FVD YDPTIE+++ K + ++G+ L ++DTAGQ+
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 65
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
EYS Y G++LV++V S+KSFE I ++ + ++P++LVGNK DL
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKK 175
+ + + LAE +N F+++SAK D F ++ E +K + K
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 301 bits (773), Expect = e-106
Identities = 92/169 (54%), Positives = 128/169 (75%), Gaps = 1/169 (0%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+A +K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAG
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE+Y+A+RD Y R+GEGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
V + +A+ AEQ+N+ +++TSAKTR VD F+ L+REI+ KM
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM 184
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 299 bits (769), Expect = e-105
Identities = 93/167 (55%), Positives = 119/167 (71%), Gaps = 1/167 (0%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+KLVVVG GGVGKSALTIQ IQ++FV +YDPTIEDSY K +DG A LDILDTAGQE
Sbjct: 9 THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
E+ AMR+QYMR G GFLLVFA+N +SF ++G QI RVKD ++ P+VLVGNK DL +
Sbjct: 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
V ++A ++ + + SAK R+ VD+AF LVR ++K +
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 298 bits (766), Expect = e-105
Identities = 94/167 (56%), Positives = 128/167 (76%), Gaps = 2/167 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M EYKLVV+G+GGVGKSALT+Q +Q FV++YDPTIEDSYRKQV +D + +L+ILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
E+++AMRD YM+ G+GF LV+++ + +F D+ REQI RVKD E+VPM+LVGNKCDL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 121 -STWAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V Q Q LA Q+ N F+++SAK+++ V++ FY LVR+I +
Sbjct: 121 EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 298 bits (765), Expect = e-105
Identities = 89/166 (53%), Positives = 126/166 (75%), Gaps = 1/166 (0%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+A +K+++VG+GGVGKSALT+Q + + FV++Y+PT DSYRK+VV+DGE +DILDTAG
Sbjct: 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 61
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE+Y+A+RD Y R+GEGFL VF++ M+SF +REQI RVK+ E VP +LVGNK DL
Sbjct: 62 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121
Query: 121 -STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + +A+ A+Q+N+ +++TSAKTR VD F+ L+REI+
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 297 bits (762), Expect = e-104
Identities = 96/167 (57%), Positives = 122/167 (73%), Gaps = 2/167 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ YKLVVVG GGVGKSALTIQ Q FVD+YDPTIEDSY K ID + A+LD+LDTAG
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QEE+SAMR+QYMRTG+GFL+V++V SFE + + + I RVKD E PM+LV NK DL
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 121 STW-AVDMNQAQELAEQFNIPFIKTSAKT-RMGVDDAFYTLVREIKK 165
V +Q +E+A ++NIP+I+TSAK + VD F+ LVR I++
Sbjct: 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 292 bits (750), Expect = e-103
Identities = 62/168 (36%), Positives = 100/168 (59%), Gaps = 2/168 (1%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+Y++ V GAGGVGKS+L ++ ++ F + Y PT+ED+YR+ + D L I DT G
Sbjct: 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSH 62
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-DAEEVPMVLVGNKCDLS 121
++ AM+ + G F+LV+++ S +S E++ EQI +K D E +P++LVGNKCD S
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 122 T-WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
V ++A+ LA + F++TSAK V + F L+ K+ +
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTV 170
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 289 bits (743), Expect = e-102
Identities = 52/170 (30%), Positives = 94/170 (55%), Gaps = 3/170 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
MA Y++V++G GVGK++L D ++ ED Y + + +DGE L ++DT
Sbjct: 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWE 61
Query: 61 QE--EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKC 118
E + S ++ ++ G +++V+++ SFE R Q++R A+ VP++LVGNK
Sbjct: 62 AEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA 121
Query: 119 DLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
DL+ V + + + A F+ FI+TSA + V + F +VR+++ +
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 288 bits (739), Expect = e-101
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
Query: 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
+ YK++++GA GVGKSAL +Y + +V+DGE A L + D Q
Sbjct: 1 SVYKVLLLGAPGVGKSALARIF-GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 59
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
+ + M G+ +++V++V SFE R Q++R + ++VP++LVGNK DL
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV 119
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ V +++ + A F+ FI+TSA V F +VR+I+ +
Sbjct: 120 RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 166
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 287 bits (736), Expect = e-100
Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 3/170 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
AE KL + G GVGKSAL ++ + F+ EYDPT+E +YR Q ID E ++ILDTAG
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE+ R+ +MR GEGF+LV+ + SFE++ + + +K + V ++LVGNK DL
Sbjct: 86 QEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144
Query: 121 ST-WAVDMNQAQELAEQFNIPFIKTSAKT-RMGVDDAFYTLVREIKKDKM 168
V + ++LA + F + SA T + + FY L RE+++ +M
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRM 194
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 284 bits (728), Expect = 3e-99
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 3/167 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+K+++VG GVGKS L ++P ED+Y +++++D E L + D Q
Sbjct: 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 63 EYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL- 120
+ +RD ++TG+ FL+VF+V +SF + +++ + ++P++LVGNK DL
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 121 STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+ V + + + LA + I+TSA + F VR+I+ +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 280 bits (718), Expect = 5e-98
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPT-IEDSYRKQVVIDGETALLDILDTAG 60
+K+++VG GVGKS L ++ ED+Y +++++D E L + D
Sbjct: 1 GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60
Query: 61 QEEYSA-MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
Q + ++D ++TG+ FL+VF+V +SF + +++ + ++P++LVGNK D
Sbjct: 61 QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120
Query: 120 L-STWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
L + V + + + LA + I+TSA + F VR+I+ +
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 169
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 274 bits (702), Expect = 2e-95
Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 5/168 (2%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E L ++G G GKSALT++ + F+ EYDP +ED+Y + +D + L ++DTA +
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLD 80
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK-RVKDAEE-VPMVLVGNKCDL 120
++Y+ FL+V++V+S +SF+ SY E + K+ + +P +L+GNK D+
Sbjct: 81 TPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139
Query: 121 STW-AVDMNQAQELAEQFNIPFIKTSAKTRM-GVDDAFYTLVREIKKD 166
+ + V + LA +F F + SA V F+ VRE +++
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 273 bits (701), Expect = 6e-95
Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETA---LLDI 55
Y++V++G GVGKS L H + + ED+Y + +++DGE+A LLD+
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 56 LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
+ G+ E+ + D M+ G+ +L+V+++ SFE R Q++R + E++P++LVG
Sbjct: 95 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152
Query: 116 NKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
NK DL V +++ + A F+ FI+TSA + V + F +VR+++ + + K
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 270 bits (693), Expect = 6e-94
Identities = 58/189 (30%), Positives = 105/189 (55%), Gaps = 8/189 (4%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--PTIEDSYRKQVVIDGETA---LLDI 55
M Y++V++G GVGKS L H + D ED+Y + +++DGE+A LLD+
Sbjct: 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDM 63
Query: 56 LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVG 115
+ G+ E+ + D M+ G+ +L+V+++ SFE R Q++R + E++P++LVG
Sbjct: 64 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121
Query: 116 NKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEK 174
NK DL V +++ + A F+ FI+TSA + V + F +VR+++ + + K +
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNE 181
Query: 175 KKRGISGNK 183
++ K
Sbjct: 182 RRLAYQKRK 190
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 263 bits (674), Expect = 4e-91
Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 10/169 (5%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E K+ +VG GKSAL + + +V E P ++K++V+DG++ LL I D G
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
E Q+ + + VF++ SF+ + +Y ++ ++A EVPMVLVG + +S
Sbjct: 79 EL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133
Query: 123 W---AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
+D ++A++L+ + +T A + V+ F + +++ +
Sbjct: 134 ANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 233 bits (596), Expect = 2e-79
Identities = 37/174 (21%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ E +L V+G GKS+L + + + + T + Y+K++++DG+T L+ I + AG
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAG 63
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIK--RVKDAEEVPMVLVG--N 116
++ + + VF++ SF+ + Q+ R + + + LVG +
Sbjct: 64 AP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 118
Query: 117 KCDLSTW-AVDMNQAQEL-AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
+ S+ V +A+ L A+ + +T A + VD F + +++ +
Sbjct: 119 RISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 209 bits (533), Expect = 2e-69
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 15/200 (7%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
K V VG G VGK+ + I N F +Y PT+ D++ V +DG+ L + DTAG
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAG 66
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE+YS +R R + F+L F++ S S+E++ R + A VP+VLVG K DL
Sbjct: 67 QEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDL 125
Query: 121 ---------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
T + Q +EL +Q +I+ S+KT+ V F T ++ + + +
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185
Query: 171 GKEKKKRGISGNKLKQCCVL 190
++++ N + C +
Sbjct: 186 EVPRRRK----NHRRSGCSI 201
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 162 bits (413), Expect = 2e-51
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
K V+VG G VGK++L + N + EY PT D++ V +DG L + DTAG
Sbjct: 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAG 77
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
Q+E+ +R + FLL F+V S SF+++ R + P++LVG + DL
Sbjct: 78 QDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDL 136
Query: 121 -------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKD 166
V A+ LAE+ +I+ SA T+ + + F +
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAG--- 193
Query: 167 KMLRGKEKKK 176
++ + ++
Sbjct: 194 --IQYSDTQQ 201
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 155 bits (393), Expect = 2e-48
Identities = 58/178 (32%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
K++++G GVGKS+L ++ + F E TI ++ K + +DG A L I DTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R +G +LV+ V +F + ++ +++ ++ +LVGNK D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGIS 180
VD N+ + A + ++ FI+ SAKT GV AF LV +I + L E + G S
Sbjct: 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 155 bits (394), Expect = 3e-48
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 4/176 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--EDSYRKQVVIDGETALLDILDTAGQ 61
YK+ ++G GGVGK+ +++ F Y+ T+ + + G ++ DTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
E+ + ++D Y G +L F V S + +++ + ++ + V E P+V+ NK D+
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIK 130
Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKK 176
+ E+ + N + + SAKT F L R L
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 152 bits (386), Expect = 2e-47
Identities = 56/176 (31%), Positives = 94/176 (53%), Gaps = 9/176 (5%)
Query: 1 MAEY----KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDI 55
MA K++++G GGVGKS+L + + N F + TI + K + +DG + I
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 56 LDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMV 112
DTAGQE + ++R + R + LL F+V+ +SF+++ +++++ VK+ E P V
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 113 LVGNKCDLSTWAVDMNQAQELAEQ-FNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
++GNK D+S V +AQ + P+ +TSAK V AF VR + +
Sbjct: 121 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 151 bits (384), Expect = 4e-47
Identities = 58/176 (32%), Positives = 89/176 (50%), Gaps = 15/176 (8%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
K V VG G VGK+ L I N F +Y PT+ D++ VV++G T L + DTAG
Sbjct: 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAG 65
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCD 119
QE+Y+ +R R + F+L F++ S S+E++ + I +K A VP+VLVG K D
Sbjct: 66 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSK--KWIPELKHYAPGVPIVLVGTKLD 123
Query: 120 L-----------STWAVDMNQAQELAEQFNIP-FIKTSAKTRMGVDDAFYTLVREI 163
L + Q +EL + P +I+ S+K++ V F +R +
Sbjct: 124 LRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 150 bits (380), Expect = 2e-46
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 12/177 (6%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
K+VVVG G VGK+ L + + Y PT+ +++ + E +L + DTAGQEEY
Sbjct: 25 KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEY 84
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
+R + LL FAVN+ SF++I + + +IK + VLVG K DL
Sbjct: 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH--YIDTAKTVLVGLKVDLRKD 142
Query: 121 STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKK 176
+ V + +L ++ + +I+ S+ ++G+++ F V I K K
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI-----FSNKPVPK 194
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 149 bits (379), Expect = 3e-46
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
M KLVVVG G GK+ L I ++ F + Y PT+ ++Y + +DG+ L + DTAG
Sbjct: 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 82
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCD 119
QE+Y +R + L+ F+V+S S E+I + ++K VP++LV NK D
Sbjct: 83 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK--HFCPNVPIILVANKKD 140
Query: 120 L-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
L V + + +A + +++ SAKT+ GV + F T R
Sbjct: 141 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA-- 198
Query: 166 DKMLRGKEKKK 176
L+ + +
Sbjct: 199 ---LQKRYGSQ 206
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 148 bits (377), Expect = 7e-46
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 12/197 (6%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
K++++G GVGK++L Q + F ++Y TI D K+V++D + I DTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMVLVGNKCD 119
+ ++ + R + +LVF V + +F+ + S+R++ +D E P V++GNK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 120 LSTWAVDMNQAQE-LAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK---DKMLRGKEKK 175
L V +AQ + NIP+ +TSAK + V+ AF T+ R K + L + +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPE 188
Query: 176 KRGISGN----KLKQCC 188
+ N + C
Sbjct: 189 PIKLDKNERAKASAESC 205
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 148 bits (377), Expect = 8e-46
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 4/185 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+K++++G VGK++ + + F + T+ D K + + + L I DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y + Y R GF+L++ + + +SF + + QIK + ++LVGNKCD+
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQVLLVGNKCDMED 127
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
V + ++LA+ F + SAK + V F LV I + KM + ++G
Sbjct: 128 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE-KMSESLDTADPAVTG 186
Query: 182 NKLKQ 186
K
Sbjct: 187 AKQGP 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 150 bits (380), Expect = 8e-46
Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 8/152 (5%)
Query: 22 QLIQNHFVDEYDPTIEDSYRKQVVIDGETAL--LDILDTAGQEEYSAMRDQYMRTG---- 75
+ I + + T Y K+ + L T + M G
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163
Query: 76 EGFLLVFAV--NSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQEL 133
+GFLL V ++F+D + + + P+V+V KCD +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223
Query: 134 AEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ N+ ++TSA++ + VD AF TLV+ I K
Sbjct: 224 LSKKNLQVVETSARSNVNVDLAFSTLVQLIDK 255
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 149 bits (377), Expect = 1e-45
Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
+KLV+VG GG GK+ + + F +Y T+ + + + ++ DTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
++ +RD Y + +++F V S +++++ ++ + RV E +P+VL GNK D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 133
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
++ + N+ + SAK+ + F L R++ D L
Sbjct: 134 -RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 148 bits (376), Expect = 1e-45
Identities = 56/184 (30%), Positives = 100/184 (54%), Gaps = 3/184 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
K++++G GVGKS L ++ +++ F + TI ++ K V I+G+ L + DTAGQE
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G +LV+ V ++F +I + + + + +E ++LVGNK D+ T
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMET 139
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGN 182
V +Q + LA++ IPFI++SAK V++ F+TL + I++ K+ K
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE-KIDSNKLVGVGNGKEG 198
Query: 183 KLKQ 186
+
Sbjct: 199 NISI 202
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 148 bits (374), Expect = 2e-45
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
K VVVG G VGK+ L + + F +EY PT+ D Y V + G+ LL + DTAGQE+Y
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD-AEEVPMVLVGNKCDL--- 120
+R + FL+ F+V + SF+++ E + +K+ A VP +L+G + DL
Sbjct: 80 DRLRPLSYPMTDVFLICFSVVNPASFQNV--KEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
+ + Q Q+LA++ +++ SA T+ G+ F +
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII 189
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 147 bits (374), Expect = 2e-45
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
K VVVG G VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAG
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
QE+Y +R + FL+ F++ S SFE++ + R P++LVG K DL
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDL 146
Query: 121 -------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
+ Q +A++ + +++ SA T+ G+ F +R
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 146 bits (370), Expect = 3e-45
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
K+VVVG G VGKS++ + + F +Y TI D +Q+ ++ E L + DTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
E+ A+ Y R + +LVF+ +SFE I S+RE++ + ++P LV NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA--EVGDIPTALVQNKIDLLD 123
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ +A+ LA++ + F +TS K + V + F L + +
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 146 bits (371), Expect = 4e-45
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 5/175 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL+++G GVGKS+L ++ N F Y TI ++ + V I+GE L I DTAGQE
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V S +SF ++ + +I + ++V +LVGNK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPE 127
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKK 176
V+ A + A Q I +TSAK + V++ F + + + K++
Sbjct: 128 RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR-AKKDNLAKQQ 181
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 146 bits (370), Expect = 4e-45
Identities = 54/163 (33%), Positives = 96/163 (58%), Gaps = 2/163 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
K++++G GVGKS L ++ +++ F + TI ++ K V I+G+ L I DTAGQE
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G +LV+ + ++F +I + + + + +E ++LVGNK D+ T
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN-DEAQLLLVGNKSDMET 122
Query: 123 WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V +Q + LA++ IPFI++SAK V++ F+TL + I++
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 146 bits (370), Expect = 4e-45
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 8/170 (4%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGE-TALLDILDTAGQ 61
K++++G GVGK++L + + + + +Y TI D K+V +DG+ A + + DTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKR---VKDAEEVPMVLVGNKC 118
E + ++ + R + +LV+ V + SFE+I S+R++ V E P V++GNK
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 119 DLST--WAVDMNQAQELAEQF-NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
D V AQELA+ +IP TSAK + VD AF + R +
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 145 bits (368), Expect = 1e-44
Identities = 57/170 (33%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
YK+V+ G VGKS+ ++L +N F + T+ ++ K +++DGE +L + DTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y R +G LL++ V KSF +I + + I+ E VP++LVGNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH-ETVPIMLVGNKADIRD 147
Query: 123 W-------AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + ++LA + F +TSAK + +A L RE+KK
Sbjct: 148 TAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 145 bits (369), Expect = 2e-44
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 13/192 (6%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETAL---------- 52
KL+ +G GVGK+ + N F ++ T+ D K+VV + +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
L + DTAGQE + ++ + R GFLL+F + S +SF ++ ++ Q++ E +V
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 113 LVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRG 171
L+GNK DL V+ QA+ELA+++ IP+ +TSA T V+ A TL+ I K +M +
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK-RMEQC 204
Query: 172 KEKKKRGISGNK 183
EK + + N
Sbjct: 205 VEKTQIPDTVNG 216
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 144 bits (366), Expect = 2e-44
Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y + Y R GF+L++ + + +SF + + QIK + ++LVGNKCD+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW-DNAQVILVGNKCDMEE 142
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + Q LAEQ F + SAK + V AF LV I
Sbjct: 143 ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 144 bits (366), Expect = 3e-44
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 4/182 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+KL+++G GVGKS L ++ + + + Y TI D + + +DG+T L I DTAGQE
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R E V +LVGNKCDL+T
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTT 135
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
VD A+E A+ IPF++TSAK V+ +F T+ EIKK +M G S
Sbjct: 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK-RMGPGATAGGAEKSN 194
Query: 182 NK 183
K
Sbjct: 195 VK 196
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 144 bits (365), Expect = 5e-44
Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+K+V++G GVGK+ L + Q F TI + K V I+GE L I DTAGQE
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y R+ +L + + +SF + + +I++ +V VLVGNK DL+
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVITVLVGNKIDLAE 145
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V +A+E +E ++ +++TSAK V+ F L +
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 143 bits (362), Expect = 6e-44
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 5/170 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETAL-LDILDTAGQ 61
K+VV+G G GK++LT Q F +Y TI D + +++ + G + L I D GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD--AEEVPMVLVGNKCD 119
M D+Y+ +G LLV+ + + +SFE++ + +K+V + + + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKM 168
L + + ++ SAKT V F + EI K+
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKL 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 143 bits (363), Expect = 8e-44
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 4/185 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+K+V++G GVGKS L + +N F E TI + + + +DG+T I DTAGQE
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y + Y R G LLV+ + ++E++ + ++++ D + ++LVGNK DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 124
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
AV ++A+ AE+ N+ FI+TSA V++AF ++ EI + + + + +
Sbjct: 125 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR-IVSQKQIADRAAHDE 183
Query: 182 NKLKQ 186
+
Sbjct: 184 SPGNN 188
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 143 bits (363), Expect = 9e-44
Identities = 63/164 (38%), Positives = 96/164 (58%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+KL+++G GVGKS L ++ + + + Y TI D + + +DG+T L I DTAGQE
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF ++ + ++I R E V +LVGNKCDL+T
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKLLVGNKCDLTT 152
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
VD A+E A+ IPF++TSAK V+ +F T+ EIKK
Sbjct: 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 143 bits (362), Expect = 1e-43
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL+++G VGK++ + + F + T+ ++ K V + L I DTAGQE
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y + Y R GFLL++ + + +SF + + QIK + ++LVGNKCDL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQVILVGNKCDLED 141
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + LA+ F + SAK + V F LV I +
Sbjct: 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 143 bits (362), Expect = 1e-43
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 4/182 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL+++G GVGKS L ++ + + ++Y TI ++ K V +DG+T L I DTAGQE
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G ++V+ V +SF + + ++I R V +LVGNKCDL
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT-STVLKLLVGNKCDLKD 127
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
V+ + A+E A+ +PF++TSA V+DAF T+ R+I K+ M + +
Sbjct: 128 KRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI-KESMSQQNLNETTQKKE 186
Query: 182 NK 183
+K
Sbjct: 187 DK 188
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 142 bits (360), Expect = 2e-43
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 3/165 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
+K +++G GVGKS L Q + F+ + TI + + + + G+ L I DTAGQE
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ A+ Y R G L+V+ + ++ + S+ + + + ++L+GNK DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN-PNTVIILIGNKADLEA 134
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
V +A++ AE+ + F++ SAKT V+DAF ++I ++
Sbjct: 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 142 bits (361), Expect = 2e-43
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+K+V++G GVGK+ L + +N F + TI + + V++ I DTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y A+ Y R G LLVF + +++ + + +++ + + ++LVGNK DLS
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQ 144
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V +A+ AE + F++TSA V+ AF T+++EI
Sbjct: 145 AREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 142 bits (360), Expect = 2e-43
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
+K++V+G VGK+ LT + F D + TI D + V IDGE + + DTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 63 EY-SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
+ +M Y R + V+ + +M SF + ++ E+ K+ A ++P +LVGNKCDL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRM---GVDDAFYTLVREIKK 165
+ V + AQ+ A+ ++P +TSAK V+ F TL ++K
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 142 bits (360), Expect = 2e-43
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
+K +V+G+ G GKS L Q I+N F + + TI + + V + G+T L I DTAGQE
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y R G LLV+ + S +++ + ++ + + + ++L GNK DL
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIVVILCGNKKDLDP 144
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V +A A++ + F++TSA T V++AF R I
Sbjct: 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 141 bits (358), Expect = 3e-43
Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KL+++G GVGK+ + + ++ F + TI ++ + + +DG+ L I DTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R G +LV+ + + KSF++I ++ I+ +V +++GNKCD++
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVND 127
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRG 178
V + ++LA + I F++TSAK + V++AF+TL R+IK KM + + G
Sbjct: 128 KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA-KMDKNWKATAAG 183
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 141 bits (358), Expect = 5e-43
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-----------EDSYRKQVVIDGETAL 52
K + +G GVGK+++ Q F ++ T+ + V G+
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMV 112
L + DTAG E + ++ + R GFLL+F + + +SF ++ ++ Q++ +E +V
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 113 LVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRG 171
L GNK DL AV +A+ELAE++ IP+ +TSA + A L+ I K +M R
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK-RMERS 190
Query: 172 KEK 174
+K
Sbjct: 191 VDK 193
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 140 bits (355), Expect = 6e-43
Identities = 51/168 (30%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
+ ++KLV++G VGKS+L ++ ++ F + + TI ++ + V +D T +I DTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE Y ++ Y R + ++V+ + + +SF ++ ++++R + + L GNK D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKAD 122
Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
L+ AVD +AQ A+ ++ F++TSAKT M V++ F + +++ K+
Sbjct: 123 LANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 141 bits (357), Expect = 6e-43
Identities = 55/171 (32%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
+K +++G GVGKS L +Q F +D TI + + V IDG+ L I DTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y R G LLV+ + ++F + S+ E ++ + ++L+GNK DL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLES 140
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
V + + A + + F++TSAKT V++AF +EI K+ +G
Sbjct: 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI-YRKIQQGL 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 140 bits (356), Expect = 8e-43
Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+K+V++G GVGKS L + +N F E TI + + + +DG+T I DTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y A+ Y R G LLV+ + ++E++ + ++++ D + ++LVGNK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRH 148
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
AV ++A+ AE+ + FI+TSA V+ AF T++ EI
Sbjct: 149 LRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 140 bits (355), Expect = 1e-42
Identities = 53/176 (30%), Positives = 93/176 (52%), Gaps = 4/176 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETALLDILDTAGQE 62
+K +V+G G GKS L Q I+ F D+ + TI + K + + G+ L I DTAGQE
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y R G LLV+ + S +++ + ++ + + + + ++L GNK DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDA 129
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKR 177
V +A A++ + F++TSA T V++AF R+I +K+ G+ +R
Sbjct: 130 DREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-LNKIESGELDPER 184
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 140 bits (354), Expect = 2e-42
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
+ E K+ ++G GVGKS++ + +Q+HF PTI S+ K V E I DTA
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE + ++ Y R ++V+ + SF + + +++K E + M + GNKCD
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCD 139
Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
LS V + A+E AE ++TSAK + +++ F + R+I
Sbjct: 140 LSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 139 bits (353), Expect = 3e-42
Identities = 48/198 (24%), Positives = 98/198 (49%), Gaps = 15/198 (7%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KLV +G VGK++L + + + F + Y TI + K + ++ T L + DTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y+R ++V+ + ++ SF+ + + ++ + +V ++LVGNK DL+
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLAD 135
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
V + + + A++ N+ FI+TSAK V F + + M +++ + +
Sbjct: 136 KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP--GMESTQDRSREDMID 193
Query: 182 NKLKQ----------CCV 189
KL++ C +
Sbjct: 194 IKLEKPQEQPVSEGGCLL 211
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 139 bits (353), Expect = 4e-42
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 4 YKLVVVGAGGVGKSALTIQLI--QNHFVDEYDPTI-EDSYRKQVVIDGETALLDI--LDT 58
K+ VVG VGKSAL + F+ +Y T + V I T +++ LDT
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80
Query: 59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK--DAEEVPMVLVGN 116
AG + Y QY +LVF V+SM+SFE ++ E +K + + VLV N
Sbjct: 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140
Query: 117 KCDLST--WAVDMNQAQELAEQFNIPFIKTSAK-TRMGVDDAFYTLVREIKK 165
K DL V ++ AQ+ A + F SA D F ++ +
Sbjct: 141 KTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 138 bits (350), Expect = 4e-42
Identities = 50/164 (30%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+K+V++G G VGK++L ++ +N F D++ T+ S+ K++ I G+ L I DTAGQE
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ A+ Y R G +LV+ + SF+ + ++ ++++++ E+ + +VGNK DL
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG-NEICLCIVGNKIDLEK 125
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + +A+ AE TSAK G+++ F L + + +
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 139 bits (353), Expect = 6e-42
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 4/185 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+K+V++G GVGKS L + +N F + TI + + + I+G+ I DTAGQE
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y A+ Y R G L+V+ ++ S+E+ + +++ D + V + L+GNK DL+
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAVGLIGNKSDLAH 132
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
AV +++ A++ + F +TSA VD AF L+ I K+ + + +
Sbjct: 133 LRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI-YQKVSKHQMDLGDSSAN 191
Query: 182 NKLKQ 186
Sbjct: 192 GNANG 196
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 138 bits (350), Expect = 7e-42
Identities = 49/165 (29%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+++++G+ GVGK++L + + F + T+ ++ K V + G+ L I DTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
++++ Y R+ +G +LV+ + ++F+D+ + + I + E+ ++LVGNK D T
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELLLVGNKLDCET 145
Query: 123 W-AVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ Q ++ A+Q + F + SAK VD+ F LV +I K
Sbjct: 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 138 bits (351), Expect = 7e-42
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETALLDILDTAGQE 62
+KLV+VG VGK+ + + F + TI D K + I G+ L I DTAGQE
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ + Y R+ G +L + + SF + + E +++ + +L+GNK DLS
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQLLIGNKSDLSE 148
Query: 123 W-AVDMNQAQELAEQFNI-PFIKTSAKTRMGVDDAFYTLVREIKK 165
V + +AQ LAE ++I I+TSAK V++AF + E+
Sbjct: 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 137 bits (348), Expect = 8e-42
Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 3/167 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
+ E K+ ++G GVGKS++ + +++ F +PTI S+ K V E I DTA
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
G E + A+ Y R ++V+ + ++F + ++ ++++ + + + GNKCD
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCD 122
Query: 120 LSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
L+ V A++ A+ + F++TSAK + +++ F + R I
Sbjct: 123 LTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 136 bits (346), Expect = 2e-41
Identities = 52/165 (31%), Positives = 95/165 (57%), Gaps = 4/165 (2%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDE-YDPTIEDSYR-KQVVIDGETALLDILDTAGQ 61
+K+++VG GVGK+ L ++ F+ + T+ +R K + +DG L + DTAGQ
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLS 121
E + ++ Y R LL++ V + SF++I ++ +I +V ++L+GNK D +
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSA 129
Query: 122 TW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V ++LA+++ +PF++TSAKT + VD AF + +E+K+
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 136 bits (345), Expect = 3e-41
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 3/166 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
KLV++G G GKS+L ++ +++ FV+ + TI ++ + + ++ T +I DTAGQE
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
Y ++ Y R ++VF V + SFE + ++++ + + M L GNK DL
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN-PNMVMALAGNKSDLLD 131
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
V AQ A++ + F++TSAKT V + FY + R + + +
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 136 bits (345), Expect = 7e-41
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+ K+V+VG GG GK++L + F + Y PT+ + Y + + G+ L I DTAG
Sbjct: 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAG 91
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGNKC 118
Q++Y +R + LL F V S SF++I + Y E + ++VP+++VG K
Sbjct: 92 QDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPE-VNH--FCKKVPIIVVGCKT 148
Query: 119 DL-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
DL V ++ QE+A + +++ SA+ V F
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 134 bits (339), Expect = 3e-40
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTAGQE 62
+KLV +G VGK++L + + + F + Y TI + K + ++ T L + DTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLST 122
+ ++ Y+R ++V+ + + SF + + ++ + +V ++LVGNK DLS
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSD 133
Query: 123 W-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREI 163
V + + A++ N+ FI+TSAK V F + +
Sbjct: 134 KRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 132 bits (333), Expect = 3e-39
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 41/200 (20%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--------------------------- 36
YK V++G VGKS++ ++L ++ F + + TI
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 37 -----------EDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVN 85
+ + DI DTAGQE Y+++ Y R ++VF ++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 86 SMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTS 145
+ + + ++ Q+K + ++LV NK D + + VD+ + Q+ A+ N+ FI+TS
Sbjct: 128 NSNTLDRAKTWVNQLKI---SSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 146 AKTRMGVDDAFYTLVREIKK 165
AKT + + FY L EI K
Sbjct: 185 AKTGTNIKNIFYMLAEEIYK 204
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 129 bits (325), Expect = 5e-38
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 1 MAEY--KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDT 58
MA KLV+VG G GK+ L I ++ F + Y PT+ ++Y + +DG+ L + DT
Sbjct: 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 80
Query: 59 AGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGN 116
AGQE+Y +R + L+ F+++S S E+I E +K VP++LVGN
Sbjct: 81 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPE-VKHF--CPNVPIILVGN 137
Query: 117 KCDL-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
K DL V + +++A + + +++ SAKT+ GV + F R
Sbjct: 138 KKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 124 bits (314), Expect = 2e-36
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 22/187 (11%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
K VVVG G VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAGQE+Y
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
+R + L+ F++ S SFE++ + + +++ P++LVG K DL
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH--HCPNTPIILVGTKLDLRDD 124
Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVREIKKDKML 169
+ Q +A++ + +++ SA T+ G+ F +R + L
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV-----L 179
Query: 170 RGKEKKK 176
KK
Sbjct: 180 CPPPVKK 186
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 124 bits (314), Expect = 2e-36
Identities = 40/205 (19%), Positives = 77/205 (37%), Gaps = 31/205 (15%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
+A KLV+VG GK+A+ L ++ + + Y PT+ ++Y + + + L + DT+G
Sbjct: 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG 84
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCD 119
Y +R + LL F ++ ++ + +R +I ++L+G K D
Sbjct: 85 SPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTD 142
Query: 120 L-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRM-GVDDAFYTLVREIK 164
L + Q +A+Q +++ SA T + F T
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLC- 201
Query: 165 KDKMLRGKEKKKRGISGNKLKQCCV 189
L ++ V
Sbjct: 202 ----LNKPSPLP--------QKSPV 214
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 122 bits (308), Expect = 6e-36
Identities = 50/170 (29%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETALLDILDTA 59
+ KLV++G VGKS++ ++ + N F + +PTI ++ ++V I+ T +I DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 60 GQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCD 119
GQE ++++ Y R + L+V+ V +SF + +++ +++ + LVGNK D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKID 119
Query: 120 LSTW----AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
V + ++LAE+ + F +TSAKT V+D F + +I
Sbjct: 120 XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL 169
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 122 bits (309), Expect = 7e-36
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
K+VVVG GK+AL ++ F + Y PT+ ++Y ID + L + DT+G Y
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS-YREQIKRVKDAEEVPMVLVGNKCDL--- 120
+R + L+ F ++ ++ + + ++ +I+ M+LVG K DL
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD 126
Query: 121 ----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRM-GVDDAFYTLVR 161
V +Q +A+Q +I+ SA V D F+
Sbjct: 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 122 bits (309), Expect = 1e-35
Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
K+VVVG GK+AL ++ F + Y PT+ ++Y ID + L + DT+G Y
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKDAEEVPMVLVGNKCDL-- 120
+R + L+ F ++ ++ + + E I+ M+LVG K DL
Sbjct: 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEF--CPNTKMLLVGCKSDLRT 146
Query: 121 -----------STWAVDMNQAQELAEQFN-IPFIKTSAKTRM-GVDDAFYTLVR 161
V +Q +A+Q +I+ SA V D F+
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 200
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 115 bits (291), Expect = 4e-33
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 18/182 (9%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIE-DSYRKQVVIDGETAL---LDIL 56
KL++VG G GK+ L QL++ D T+ D + I + L++
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 57 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVPMVLVG 115
D AG+EE+ + +M +L V+ ++ ++ + + + IK A P++LVG
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVG 119
Query: 116 NKCDLST----WAVDMNQAQELAEQFNIPFI-----KTSAKTRMGVDDAFYTLVREIKKD 166
D+S A +EL + P I + + + T++ E
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179
Query: 167 KM 168
K+
Sbjct: 180 KI 181
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 118 bits (297), Expect = 1e-31
Identities = 34/183 (18%), Positives = 68/183 (37%), Gaps = 15/183 (8%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI---------DGETA 51
+ E K+ ++G G GK++L QLI F + T + + + +
Sbjct: 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98
Query: 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPM 111
L D GQE A +M ++L+ ++ + + I++ + P+
Sbjct: 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYWLRHIEKY--GGKSPV 153
Query: 112 VLVGNKCDLSTW-AVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
++V NK D + ++ + E F + S K GV+ +L + +
Sbjct: 154 IVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSIY 213
Query: 171 GKE 173
G
Sbjct: 214 GTP 216
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 99.3 bits (247), Expect = 2e-25
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 21/178 (11%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
K VVVG G VGK+ L I N F EY PT+ D+Y V++DG+ L + DTAG
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 212
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGS--YREQIKRVKD-AEEVPMVLVGNK 117
E+Y +R + FL+ F++ S SF + + Y E V+ P++LVG K
Sbjct: 213 LEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPE----VRHHCPNTPIILVGTK 268
Query: 118 CDL-------------STWAVDMNQAQELAEQFN-IPFIKTSAKTRMGVDDAFYTLVR 161
DL + Q +A++ + +++ SA T+ G+ F +R
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 65.9 bits (161), Expect = 6e-14
Identities = 32/183 (17%), Positives = 63/183 (34%), Gaps = 24/183 (13%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQN----------HFVDEYDPTIEDSYRKQVV--IDGET 50
+K+V G G GK+ + E + T+ + + + G
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73
Query: 51 ALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK----DA 106
+ GQ Y+A R +R +G + V + + S R + +
Sbjct: 74 TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133
Query: 107 EEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN----IPFIKTSAKTRMGVDDAFYTLVRE 162
++VP+V+ NK DL A+ + + + P ++ A GV + + R
Sbjct: 134 DDVPIVIQVNKRDLPD-ALP---VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRL 189
Query: 163 IKK 165
+
Sbjct: 190 VLA 192
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 48.3 bits (116), Expect = 1e-07
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 36/177 (20%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
K+V+ G GKS+L L V + T D R+ + IDG L I+DTAG
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAG-- 61
Query: 63 EYSAMRD--------------QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE 108
+R+ Q + + L + + + + + E I R+ +
Sbjct: 62 ----LREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL--PAK 115
Query: 109 VPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+P+ +V NK D++ + ++E I+ SA+T GVD L +K+
Sbjct: 116 LPITVVRNKADIT------GETLGMSEVNGHALIRLSARTGEGVDV----LRNHLKQ 162
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 48.8 bits (116), Expect = 2e-07
Identities = 32/177 (18%), Positives = 70/177 (39%), Gaps = 20/177 (11%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE--DSYRKQVVIDGETALLDILDTAGQE 62
KL+++G G GKS++ +I +++ + + L++ D GQ+
Sbjct: 5 KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63
Query: 63 EY-----SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV-GN 116
+ + +D + + + VF V S + +DI + + +K+++ + V +
Sbjct: 64 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 123
Query: 117 KCDL-------STWAVDMNQAQELAEQFNIP---FIKTSAKTRMGVDDAFYTLVREI 163
K DL + + M E + +F P TS + A+ +V +
Sbjct: 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 47.5 bits (114), Expect = 7e-07
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 35/145 (24%)
Query: 35 TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD--------------QYMRTGEGFLL 80
IE+ + D + + DTAG +R+ M + L
Sbjct: 271 YIEE----CFIHDK--TMFRLTDTAG------LREAGEEIEHEGIRRSRMKMAEADLILY 318
Query: 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP 140
+ + + + +++ RE A + V NK D + + +A+
Sbjct: 319 LLDLGTERLDDELTEIRELKAAHPAA---KFLTVANKLDRAA--NADALIRAIADGTGTE 373
Query: 141 FIKTSAKTRMGVDDAFYTLVREIKK 165
I SA G+D L + +
Sbjct: 374 VIGISALNGDGIDT----LKQHMGD 394
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 45.3 bits (108), Expect = 2e-06
Identities = 33/177 (18%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E +++++G G GK+ + +L V PTI + + L++ D GQ
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVV-TTKPTI-GFNVETLSYKNLK--LNVWDLGGQT 73
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
Y ++F V+S + + + +++ + EE +++ NK D
Sbjct: 74 SIRPYWRCYYADTAA--VIFVVDS-TDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDKM 168
++ A E++++ N+ +K +SA G+ + L+ IK++++
Sbjct: 131 QPG---ALS-ASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQL 183
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 43.8 bits (104), Expect = 6e-06
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E+K+++VG GK+ + Q N V PTI S +++VI+ + D GQE
Sbjct: 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINNTR--FLMWDIGGQE 71
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
+ + Y E ++ V+S E I RE++ ++ E+ +++ NK D
Sbjct: 72 SLRSSWNTYYTNTEF--VIVVVDS-TDRERISVTREELYKMLAHEDLRKAGLLIFANKQD 128
Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
+ M E+++ + IK A T G+ ++ +K
Sbjct: 129 VKE---CMT-VAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 44.5 bits (105), Expect = 7e-06
Identities = 13/88 (14%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 78 FLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF 137
++ + + E+ E++ + +++P ++V NK D++ ++ + ++ ++
Sbjct: 252 YIFDPSEHCGFPLEEQIHLFEEVH--GEFKDLPFLVVINKIDVADEE-NIKRLEKFVKEK 308
Query: 138 NIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+ IK SA G+D +++ ++
Sbjct: 309 GLNPIKISALKGTGIDLVKEEIIKTLRP 336
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 43.4 bits (103), Expect = 8e-06
Identities = 32/173 (18%), Positives = 69/173 (39%), Gaps = 20/173 (11%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+ ++++VG GK+ + +L V PTI + V + D GQ+
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKNIC--FTVWDVGGQD 84
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
+ + Y + +G L+F V+S + ++ +++ + + + +++ NK D+
Sbjct: 85 KIRPLWRHYFQNTQG--LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142
Query: 121 STWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
M EL ++ + ++ T A G+ D L E+ K
Sbjct: 143 PN---AMP-VSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 9e-06
Identities = 22/188 (11%), Positives = 56/188 (29%), Gaps = 44/188 (23%)
Query: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDP------TIEDSYRKQVVIDGETALLDILDTA 59
+++ G G GK+ + + + ++ V +++ + V++ LL +D
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 60 GQEEYSAMRDQYMRTGEGF---------------LLVFA-VNSMKSFE--DIGSYREQIK 101
+ +R LLV V + K++ ++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------ 266
Query: 102 RV----KDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFY 157
++ + + + +S + E ++ +K D
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPDEVKSL-LLK---YLDCRPQD--- 317
Query: 158 TLVREIKK 165
L RE+
Sbjct: 318 -LPREVLT 324
Score = 37.1 bits (85), Expect = 0.002
Identities = 28/248 (11%), Positives = 72/248 (29%), Gaps = 98/248 (39%)
Query: 21 IQLIQNHFVDEYD-PTIEDSYR--------KQVVIDGETA-----LLDILDTAGQEEYSA 66
+ + ++ FVD +D ++D + +++ + L L + +E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 67 MRDQYMRTGEGFLL-----------------------------VFA---VNSMKSFEDIG 94
++ +R FL+ VFA V+ ++ + +
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL- 140
Query: 95 SYREQIKRVKDAEEVP---M------VLVGNKC-DLST---------W---------AVD 126
R+ + ++ A+ V + + + C W
Sbjct: 141 --RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 127 MNQAQELAEQFNIPF---IKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISGNK 183
+ Q+L Q + + S+ ++ + + + +R +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----------------QAELRRLLKSKP 242
Query: 184 LKQCCVLL 191
+ C LL
Sbjct: 243 YENC--LL 248
Score = 28.7 bits (63), Expect = 1.4
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 40/154 (25%)
Query: 21 IQL-IQNHFVDEYD--PTIEDSYRKQVVIDGETALLDILD------------TAGQ-EEY 64
I L ++ +EY +I D Y D + + LD E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 65 SAMRDQYM---------RTGEGFLLVFAVNSMKSFEDIGSYREQI--------KRVKDAE 107
+ R ++ R + + + + + + + Y+ I + V
Sbjct: 491 TLFRMVFLDFRFLEQKIRH-DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 108 EV-----PMVLVGNKCDLSTWAVDMNQAQELAEQ 136
+ ++ DL A+ M + + + E+
Sbjct: 550 DFLPKIEENLICSKYTDLLRIAL-MAEDEAIFEE 582
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 43.5 bits (103), Expect = 2e-05
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFL-----LVFAVNSMKSFEDIGSYREQIKRVKDAEEV 109
++DT G ++ + + + +S + + + + K+ E +
Sbjct: 87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPYE----DDVVNLFKEME-I 141
Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
P V+V NK D+ ++ + SA + G DD + + I +
Sbjct: 142 PFVVVVNKIDVLG-EKAEELKGLYESRYEAKVLLVSALQKKGFDD----IGKTISE 192
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 41.9 bits (99), Expect = 3e-05
Identities = 31/174 (17%), Positives = 72/174 (41%), Gaps = 22/174 (12%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+ +++++G GK+++ +L V PT+ + + + ++ D GQ
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTV-GVNLETLQYKNIS--FEVWDLGGQT 77
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
Y + +++ V+S + +G + ++ + D +E +++ NK D
Sbjct: 78 GVRPYWRCYFSDTDA--VIYVVDS-TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQD 134
Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
L + E+AEQ + I +S+KT G+ + LV +++
Sbjct: 135 LPD---AAS-EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 41.4 bits (98), Expect = 4e-05
Identities = 38/178 (21%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E +L +VG GK+ + F ++ PT+ +++ T + + D GQ
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV-GFNMRKITKGNVT--IKLWDIGGQP 78
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEE---VPMVLVGNK 117
+ +M ++Y R +V+ V++ + E + ++ + D + +P++++GNK
Sbjct: 79 RFRSMWERYCRGVSA--IVYMVDAADQEKIEAS---KNELHNLLDKPQLQGIPVLVLGNK 133
Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
DL A+D +EL E+ N+ I+ S K + +D L++ K +
Sbjct: 134 RDLPG-ALD---EKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRR 187
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 41.0 bits (97), Expect = 5e-05
Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 22/176 (12%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E +++++G G GK+ + +L V PTI + V + D G
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVV-TTIPTI-GFNVETVTYKNLK--FQVWDLGGLT 62
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
Y + +++ V+S + IG + ++ + + EE +V+ NK D
Sbjct: 63 SIRPYWRCYYSNTDA--VIYVVDS-CDRDRIGISKSELVAMLEEEELRKAILVVFANKQD 119
Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
+ M + E+A +P +K TSA G+D+A LV +K +
Sbjct: 120 MEQ---AMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 171
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 40.6 bits (96), Expect = 6e-05
Identities = 37/174 (21%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
++++VG GK+ + +L V PTI + V + + D GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKNIS--FTVWDVGGQDKI 57
Query: 65 SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCDLS 121
+ Y + +G L+F V+S E + RE++ R+ +E +++ NK DL
Sbjct: 58 RPLWRHYFQNTQG--LIFVVDS-NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 122 TWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
MN A E+ ++ + ++ T A + G+ + L +++ K
Sbjct: 115 N---AMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 164
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 40.5 bits (95), Expect = 1e-04
Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 51/213 (23%)
Query: 6 LVVVGAGGVGKSALTIQL------IQNHFVDEYDPT--------IEDSYRKQVVID--GE 49
+++ GA VGKS+ + +Q+ Y T + K +ID G
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQS-----YSFTTKNLYVGHFDHKLNKYQIIDTPG- 85
Query: 50 TALLDILDTAGQEEYSAMRDQYMRTGEGFL------LVFAVNSMKSFEDIGSYREQI--- 100
+LD A + R+ T L ++F ++ S + + +EQI
Sbjct: 86 -----LLDRAFEN-----RNTIEMTTITALAHINGVILFIIDI--SEQCGLTIKEQINLF 133
Query: 101 KRVKDA-EEVPMVLVGNKCDLSTWAVDMNQAQELAEQF------NIPFIKTSAKTRMGVD 153
+K +V+ NK D + L +Q I F S T +GV+
Sbjct: 134 YSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVE 193
Query: 154 DAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQ 186
A T +K D+ + + KL +
Sbjct: 194 QAKITACELLKNDQ-AESILLDQEQLLNTKLGE 225
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 40.9 bits (97), Expect = 1e-04
Identities = 31/145 (21%), Positives = 52/145 (35%), Gaps = 40/145 (27%)
Query: 35 TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD--------------QYMRTGEGFLL 80
+E Q+V+ G + +LDTAG +R+ Q T + LL
Sbjct: 262 VVES----QLVVGG--IPVQVLDTAG------IRETSDQVEKIGVERSRQAANTADLVLL 309
Query: 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP 140
+ + D +E ++VK P++LV NK DL +
Sbjct: 310 TIDAATGWTTGD----QEIYEQVKHR---PLILVMNKIDLVE---KQLITSLEYPENITQ 359
Query: 141 FIKTSAKTRMGVDDAFYTLVREIKK 165
+ T+A + G+D L I +
Sbjct: 360 IVHTAAAQKQGIDS----LETAILE 380
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 39.9 bits (94), Expect = 1e-04
Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E +L+++G GK+ + + PT+ K + G L+I D GQ+
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTL-GFNIKTLEHRGFK--LNIWDVGGQK 73
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNKCD 119
+ Y + +G L++ V+S + + + +++ + E +++ NK D
Sbjct: 74 SLRSYWRNYFESTDG--LIWVVDS-ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQD 130
Query: 120 LSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
L ++ + E + I+ SA T + L+ +I
Sbjct: 131 LPG---ALS-CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 40.6 bits (96), Expect = 2e-04
Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 40/146 (27%)
Query: 35 TIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRD---------------QYMRTGEGFL 79
I + ++VI G L I+DTAG +R Q + + L
Sbjct: 281 VISE----EIVIRG--ILFRIVDTAG------VRSETNDLVERLGIERTLQEIEKADIVL 328
Query: 80 LVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI 139
V +S ED R+ ++R+K+ ++V NK D+ ++ + + +
Sbjct: 329 FVLDASSPLDEED----RKILERIKNK---RYLVVINKVDVVE-KINEEEIKNKLGT-DR 379
Query: 140 PFIKTSAKTRMGVDDAFYTLVREIKK 165
+K SA G++ L I +
Sbjct: 380 HMVKISALKGEGLEK----LEESIYR 401
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 2e-04
Identities = 40/216 (18%), Positives = 64/216 (29%), Gaps = 92/216 (42%)
Query: 21 IQLIQ-NHF-----VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRT 74
I +IQ H+ + + P GE L L A T
Sbjct: 241 IGVIQLAHYVVTAKLLGFTP-------------GE--LRSYLKGA--------------T 271
Query: 75 GEGFLLVFAV-----NSMKSFED-----------IGSYREQ---------IKRVKDAEEV 109
G LV AV +S +SF IG R ++D+ E
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-VRCYEAYPNTSLPPSILEDSLEN 330
Query: 110 ------PMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPFIKTSAKTRMGV---DDAF-- 156
PM+ + +L+ Q Q+ + N +P + + +
Sbjct: 331 NEGVPSPMLSI---SNLT-----QEQVQDYVNKTNSHLP---AGKQVEISLVNGAKNLVV 379
Query: 157 -------YTLVREIKKDKMLRGKEKKKRGISGNKLK 185
Y L ++K K G ++ + S KLK
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Score = 34.6 bits (79), Expect = 0.015
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 58/173 (33%)
Query: 26 NHFVDEYDPTIEDSYRKQVVIDGETALLDILDTA--GQ---EEYSAMRDQYMRTGEGFLL 80
NHF D Y +I D +VI+ L I G+ E YSAM + + G+
Sbjct: 1651 NHFKDTYGFSILD-----IVINNPVNLT-IHFGGEKGKRIRENYSAMIFETIVDGK---- 1700
Query: 81 VFAVNSMKSFEDIGSYREQIKRVKDAEEV-------P-MVLVGNKCDLSTWAVDMNQAQE 132
+ + K F++I + + + P + L+ + +
Sbjct: 1701 ---LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME----KAAFED------- 1746
Query: 133 LAEQFNIPFIKT---------SAKT----RMGVDDAFYTLVREIKKDKMLRGK 172
L + IP T +A M ++ +V RG
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE-VVF-------YRGM 1791
Score = 34.3 bits (78), Expect = 0.020
Identities = 23/153 (15%), Positives = 45/153 (29%), Gaps = 63/153 (41%)
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVK-----DAEEVPMVLVGNK 117
EY+A L + M S E + ++ V VP +G
Sbjct: 1766 EYAA-------------LASLADVM-SIESL------VEVVFYRGMTMQVAVPRDELGRS 1805
Query: 118 ------CDLSTWAVDMNQA--QELAEQ-------------FNIP---FIKTSAKTRMGVD 153
+ A +Q Q + E+ +N+ ++ +A +D
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV--AAGDLRALD 1863
Query: 154 DAFYTLVREIKKDKMLRGKEKKKRGISGNKLKQ 186
T+ +L K + I +L++
Sbjct: 1864 ----TVT------NVL--NFIKLQKIDIIELQK 1884
Score = 28.5 bits (63), Expect = 1.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 42 KQVVIDGETALLDIL 56
+Q V G+ LD +
Sbjct: 1851 QQYVAAGDLRALDTV 1865
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 39.1 bits (92), Expect = 2e-04
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 20/175 (11%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
E +++++G GK+ L QL PT K V G L++ D GQ
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQ-GFNIKSVQSQGFK--LNVWDIGGQR 71
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDL 120
+ Y + L++ ++S K FE+ G ++ + VP+++ NK DL
Sbjct: 72 KIRPYWRSYFENTDI--LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129
Query: 121 STWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
T A E+AE N+ I+ SA T GV D + + + K
Sbjct: 130 LT---AAP-ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAKK 180
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 39.2 bits (92), Expect = 3e-04
Identities = 29/179 (16%), Positives = 72/179 (40%), Gaps = 24/179 (13%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
E ++ +G GK+ + +L ++ PTI ++ + + D +GQ
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI-GFSIEKFKSSSLS--FTVFDMSGQ 77
Query: 62 EEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-----VPMVLVGN 116
Y + + Y + G+ ++F ++S + +E++ + + + +P++ N
Sbjct: 78 GRYRNLWEHYYKEGQA--IIFVIDS-SDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 117 KCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
K DL + + ++++ + IK + A G+ + L +I+ K
Sbjct: 135 KMDLRD---AVT-SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 38.8 bits (91), Expect = 3e-04
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 43 QVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIG---SYREQ 99
QV ++ + + LDT G E ++ MR + + + +LV A D G E
Sbjct: 49 QVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVILVVAA-------DDGVMPQTVEA 99
Query: 100 IKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP--------FIKTSAKTRMG 151
I K A VP+++ NK D A QEL E +P F K SAKT+ G
Sbjct: 100 INHAKAAN-VPIIVAINKMDKPE-ANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG 157
Query: 152 VDD 154
+D
Sbjct: 158 LDH 160
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 38.3 bits (89), Expect = 8e-04
Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 16/129 (12%)
Query: 5 KLVVVGAGGVGKSAL--TIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTAG- 60
++V+G GGVGKS+ ++ + + V + + G T ++I+DT G
Sbjct: 38 TVLVLGKGGVGKSSTVNSL-IGEQVVRVSPFQAEGLRPVMVSRTMGGFT--INIIDTPGL 94
Query: 61 -------QEEYSAMRDQYMRTGEGFLLVFAVNSMKSF--EDIGSYREQIKRVKDAEEVPM 111
+ ++ + LL + + D +
Sbjct: 95 VEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154
Query: 112 VLVGNKCDL 120
+LV
Sbjct: 155 LLVLTHAQF 163
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.8 bits (88), Expect = 8e-04
Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+ ++ VG GK+ L ++L+ + D +I DS V + L ++D G E
Sbjct: 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHE 65
Query: 63 EY-SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE-----VPMVLVGN 116
+ D++ + +VF V+S ++ E + +V +++ N
Sbjct: 66 SLRFQLLDRFKSSARA--VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 117 KCDLST 122
K D++
Sbjct: 124 KQDIAM 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 37.9 bits (89), Expect = 0.001
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQFN---IPFIKTSAKTRMGVDDAFYTLVREIKK 165
P ++ NK DL ++ + LA+ + + SA T G+ L ++
Sbjct: 271 PSLVALNKVDL----LEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 325
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 37.3 bits (86), Expect = 0.001
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 14/127 (11%)
Query: 3 EYKLVVVGAGGVGKSALTIQLI-----QNHFVDEYDPTIEDSYRKQVVIDGETALLDILD 57
+ +++++G GKS +IQ + + + T Y+ + I D
Sbjct: 20 KPRILLMGLRRSGKS--SIQKVVFHKMSPNETLFLESTN-KIYKDDISNSSFVN-FQIWD 75
Query: 58 TAGQEEY---SAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
GQ ++ + + R + V E + + + V
Sbjct: 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-DYMEALTRLHITVSKAYKVNPDMNFEV 134
Query: 115 -GNKCDL 120
+K D
Sbjct: 135 FIHKVDG 141
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 37.2 bits (87), Expect = 0.002
Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 11/86 (12%)
Query: 96 YREQIKRVK------DAEEVPMVLVGNKCDLSTWAV-----DMNQAQELAEQFNIPFIKT 144
E ++ P+++ NK D + + + + I
Sbjct: 274 LIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333
Query: 145 SAKTRMGVDDAFYTLVREIKKDKMLR 170
SA R ++ + + + +
Sbjct: 334 SALKRTNLELLRDKIYQLATQLSLEH 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 36.3 bits (84), Expect = 0.002
Identities = 22/128 (17%), Positives = 49/128 (38%), Gaps = 13/128 (10%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
+ +++ G GK++L L + + E D + + + ++D G
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGHV 102
Query: 63 EYSAMRDQYMRTGEGFL--LVFAVNSMKSFEDIGSYRE------QIKRVKDAEEVPMVLV 114
+ Y++T F+ L+F V+S + + + E I + +++
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162
Query: 115 GNKCDLST 122
NK +L T
Sbjct: 163 CNKSELFT 170
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 36.8 bits (85), Expect = 0.003
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 67 MRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVD 126
R GE LV + + F+ GS+ + R A + P++LVGNK DL +V
Sbjct: 61 FLSMLHRIGESKALVVNIVDI--FDFNGSFIPGLPRF--AADNPILLVGNKADLLPRSVK 116
Query: 127 MNQAQE----LAEQFNIPFIK---TSAKTRMGVDDAFYTLVREIKKDK 167
+ +AE+ + + SA +G+ ++ I + +
Sbjct: 117 YPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAK----VMEAINRYR 160
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 36.6 bits (84), Expect = 0.003
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEY 64
+ V++G G VG++ + + + + + TI + +V + + + L + Y
Sbjct: 15 RFVILGFGCVGQALMPL-IFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNY 73
Query: 65 SAMRDQYMRTGEGFLLVFAVN 85
+ + FL+ ++
Sbjct: 74 LEVIGSTLEEN-DFLIDVSIG 93
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 36.2 bits (83), Expect = 0.004
Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 7/163 (4%)
Query: 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD----PTIEDSYRKQVVIDGETALLDILD 57
+ + V G G GKS+ I ++ +E +E + + + D
Sbjct: 68 SVLNVAVTGETGSGKSSF-INTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 126
Query: 58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117
G + D Y+ + + F + + S I + + V K
Sbjct: 127 LPGIGSTNFPPDTYLEKMKFYEYDFFI--IISATRFKKNDIDIAKAISMMKKEFYFVRTK 184
Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
D + Q ++ + I+ + + +
Sbjct: 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPI 227
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 35.6 bits (83), Expect = 0.004
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 108 EVPMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
++L NK DL+ +D +L + + + SA +MG+++ + +K
Sbjct: 112 GANLLLALNKMDLAKSLGIEID---VDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 168
Query: 165 KDKMLR 170
K
Sbjct: 169 DKKTAE 174
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 36.4 bits (85), Expect = 0.004
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 97 REQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF--------NIPFIKTSAKT 148
E I+ KDA VP+VL NKCD + + + +EL ++ + SA T
Sbjct: 94 VESIQHAKDAH-VPIVLAINKCDKAEADPEKVK-KELLAYDVVCEDYGGDVQAVHVSALT 151
Query: 149 RMGVDD 154
+
Sbjct: 152 GENMMA 157
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 35.9 bits (83), Expect = 0.004
Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 13/129 (10%)
Query: 2 AEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQ 61
+ +++ G GK++L L + + E D + + + ++D G
Sbjct: 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 65
Query: 62 EEYSAMRDQYMRTGEGFL--LVFAVNSMKSFEDIGSYRE------QIKRVKDAEEVPMVL 113
+ Y++T F+ L+F V+S + + + E I + +++
Sbjct: 66 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125
Query: 114 VGNKCDLST 122
NK +L T
Sbjct: 126 ACNKSELFT 134
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 35.7 bits (83), Expect = 0.005
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 108 EVPMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
E ++L D + +D EL + IP + TS+ T G+++ +V +
Sbjct: 110 EKKVILAMTAIDEAKKTGMKID---RYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166
Query: 165 KDKMLR 170
K+ +L
Sbjct: 167 KNTILH 172
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 35.7 bits (83), Expect = 0.005
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 109 VPMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
P+V+ N D++ ++D ++L I A +G+ +L+ +K
Sbjct: 111 KPVVVALNMMDIAEHRGISID---TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHCSQK 167
Query: 166 DKMLR 170
K L+
Sbjct: 168 IKPLK 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 35.6 bits (83), Expect = 0.005
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQF------NIPFIKTSAKTRMGVDDAFYTLVREI 163
P ++V NK D+ +A E E F + P SA TR G+ + + + ++
Sbjct: 276 PQIIVANKMDMP-------EAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL 328
Query: 164 KKDK 167
+
Sbjct: 329 ENTP 332
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 34.4 bits (80), Expect = 0.008
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 109 VPMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIK 164
++L NK DL+ +D +L + + + SA +MG+++ + +K
Sbjct: 109 ANLLLALNKMDLAKSLGIEID---VDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 164
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 35.3 bits (81), Expect = 0.008
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 18/99 (18%)
Query: 90 FEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQF-------NIPFI 142
F+ GS+ + R ++LVGNK DL +V ++ +
Sbjct: 80 FDFNGSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVF 137
Query: 143 KTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKRGISG 181
SA G+ + L I+ + K + G
Sbjct: 138 LISAAKGQGIAE----LADAIEYY-----RGGKDVYVVG 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 34.5 bits (79), Expect = 0.011
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 3 EYKLVVVGAGGVGKSAL--TIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETALLDILDTA 59
++V+G GGVGKS+ +I + + + + G T L+I+DT
Sbjct: 39 SLTILVMGKGGVGKSSTVNSI-IGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTP 95
Query: 60 G 60
G
Sbjct: 96 G 96
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 34.1 bits (79), Expect = 0.012
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 105 DAEEVPMVLVGNKCD-LSTWAVDMNQAQ---ELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
+ +P +V K D + + ++ I TS+ T G+ + +
Sbjct: 130 KSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLIS 189
Query: 161 REIKKD 166
+K++
Sbjct: 190 TLLKEN 195
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 34.1 bits (79), Expect = 0.013
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 105 DAEEVPMVLVGNKCD-LSTWAVDMNQAQ---ELAEQFNIPFIKTSAKTRMGVDDAFYTLV 160
+P++++ K D + D + L I S++T+ G D+A+ +
Sbjct: 131 KYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIK 190
Query: 161 REIKK 165
+ I +
Sbjct: 191 KMINR 195
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 34.2 bits (79), Expect = 0.014
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 109 VPMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+P+ + N D+ ++ +L+ +P + TSA + GVD
Sbjct: 108 IPVTIALNMIDVLDGQGKKIN---VDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTS 164
Query: 166 DK 167
Sbjct: 165 TV 166
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 33.7 bits (78), Expect = 0.017
Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 33/181 (18%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
KL+ +G GK+ L L + PT +++ I D G
Sbjct: 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTW-HPTSEELAIGNIK--FTTFDLGGHI 78
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNS--MKSFEDIGSYREQIKRVKDAEE---VPMVLVGNK 117
+ + Y G +VF V++ + F++ R ++ + + E VP V++GNK
Sbjct: 79 QARRLWKDYFPEVNG--IVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNK 133
Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIK---------------TSAKTRMGVDDAFYTLVRE 162
D AV EL + S R G +AF L +
Sbjct: 134 IDAPN-AVS---EAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189
Query: 163 I 163
I
Sbjct: 190 I 190
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 34.1 bits (79), Expect = 0.020
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 106 AEEVPMVLVGNKCDLSTWAVDMNQAQELA---EQFNIPFIKTSAKTRMGVDDAFYTLVRE 162
A ++ ++ K DL + Q A TS+K + + D +
Sbjct: 115 ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLAD-----IIP 169
Query: 163 IKKDK 167
+DK
Sbjct: 170 HFQDK 174
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 33.8 bits (78), Expect = 0.022
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 112 VLVGNKCDLSTWA-VDMNQAQELAEQFN--IPFIKTSAKTRMGVDDAFYTLVREIKKDK 167
++V NK DL+ D+ + + A++ N + S KT G D + + +K+ K
Sbjct: 168 LIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEVK 226
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 33.4 bits (77), Expect = 0.022
Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 38/186 (20%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
KLV +G GK+ L L + ++ PT+ +++ I G T D G
Sbjct: 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH-PTSEELTIAGMT--FTTFDLGGHI 80
Query: 63 EYSAMRDQYMRTGEGFLLVFAVNSM--KSFEDIGSYREQIKRVKDAEE---VPMVLVGNK 117
+ + Y+ G +VF V+ + + +E++ + E VP++++GNK
Sbjct: 81 QARRVWKNYLPAING--IVFLVDCADHERLLES---KEELDSLMTDETIANVPILILGNK 135
Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIK--------------------TSAKTRMGVDDAFY 157
D A+ + L E F + S R G + F
Sbjct: 136 IDRPE-AIS---EERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 191
Query: 158 TLVREI 163
+ + I
Sbjct: 192 WMAQYI 197
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 33.9 bits (78), Expect = 0.027
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 109 VPMVLVGNKCDL--STWA--VDMNQAQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVR 161
+P+++V K D + +M L N I SAKT GVD+ ++
Sbjct: 126 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIIT 185
Query: 162 EIKKDKMLRGKEK 174
+ +++R E
Sbjct: 186 TLNNAEIIRNTES 198
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 33.3 bits (77), Expect = 0.033
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 15/68 (22%)
Query: 106 AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI------PFIKTSAKTRMGVDDAFYTL 159
+V V+V NK DL ++ + +EL +I +K SAKT G+D+
Sbjct: 108 YFKVEPVIVFNKIDL----LNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDE----- 158
Query: 160 VREIKKDK 167
+ + +
Sbjct: 159 LVDYLEGF 166
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 32.7 bits (75), Expect = 0.044
Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 109 VPMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKK 165
+P ++ N D++ ++ L+ + P I + G++ + R
Sbjct: 113 IPCIVALNMLDIAEKQNIRIE---IDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN 169
Query: 166 DKMLR 170
+ +
Sbjct: 170 ENVEL 174
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 32.9 bits (76), Expect = 0.044
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 14/67 (20%)
Query: 106 AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-----PFIKTSAKTRMGVDDAFYTLV 160
E+ V+V NK DL D + +++ E I P +KTSAKT MG+++ +
Sbjct: 113 KNELETVMVINKMDL----YDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEE-----L 163
Query: 161 REIKKDK 167
+E K K
Sbjct: 164 KEYLKGK 170
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 32.8 bits (74), Expect = 0.048
Identities = 38/189 (20%), Positives = 65/189 (34%), Gaps = 30/189 (15%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI---------DGETALL 53
E+ L+VVG G+GKS L L P +K V + G LL
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 54 DILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKS-FEDIGSYREQIKRVKDAEEVP-- 110
I+DT G + + + ++ + S FED + ++ R + +
Sbjct: 68 TIVDTPGFGDAVDNSNCWQPV---------IDYIDSKFEDYLNAESRVNRRQMPDNRVQC 118
Query: 111 MVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLR 170
+ +D+ + L E+ NI + A T E ++ K
Sbjct: 119 CLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLT---------PEECQQFKKQI 169
Query: 171 GKEKKKRGI 179
KE ++ I
Sbjct: 170 MKEIQEHKI 178
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 32.6 bits (75), Expect = 0.054
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 112 VLVGNKCDLSTWA-VDMNQAQELAEQFN--IPFIKTSAKTRMGVDD 154
++V NK L+ D+ + + A+ N I+ KT G ++
Sbjct: 158 LIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEE 203
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 32.9 bits (75), Expect = 0.060
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 6 LVVVGAGGVGKSALTIQLIQNH 27
+ + G G GKS L + +++H
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDH 171
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 32.3 bits (74), Expect = 0.078
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQF---NIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
P +++ NK D D Q+ E F I + ++ G+ + +EI ++
Sbjct: 52 PRIMLLNKADK----ADAAVTQQWKEHFENQGIRSLSINSVNGQGL-NQIVPASKEILQE 106
Query: 167 KMLRGKEK--KKRGI 179
K R + K K R I
Sbjct: 107 KFDRMRAKGVKPRAI 121
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 32.0 bits (74), Expect = 0.084
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 79 LLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN 138
L++F V + D +++ K P++L NK D + +
Sbjct: 91 LVIFVVEGTRWTPDDEMVLNKLREGK----APVILAVNKVDNVQ---EKADLLPHLQFLA 143
Query: 139 --IPF---IKTSAKTRMGVDDAFYTLVREIKK 165
+ F + SA+T + VD + ++K
Sbjct: 144 SQMNFLDIVPISAETGLNVDT----IAAIVRK 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 32.1 bits (74), Expect = 0.086
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 97 REQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIP--------FIKTSAKT 148
E I+ K A+ VP+V+ NK D A EL++ +P F+ SAK
Sbjct: 93 IEAIQHAKAAQ-VPVVVAVNKIDKPE-ADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150
Query: 149 RMGVDD 154
G+D+
Sbjct: 151 GTGIDE 156
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 31.9 bits (73), Expect = 0.086
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 110 PMVLVGNKCDLST---WAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKD 166
++LV NK DL +D +++ ++ +P I T+AK GV++ + +
Sbjct: 111 NIILVLNKFDLLKKKGAKID---IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK 167
Query: 167 K 167
Sbjct: 168 V 168
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 31.9 bits (73), Expect = 0.094
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 105 DAEEVPMVLVGNKCD----------LSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD 154
P+ + KCD L ++ ++ + SA R G+DD
Sbjct: 141 APTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDD 200
Query: 155 A 155
A
Sbjct: 201 A 201
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 31.8 bits (72), Expect = 0.11
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 22/178 (12%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG 60
E ++++VG GK+ + +L V PTI + V + + D G
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTI-GFNVETVEYKNIS--FTVWDVGG 218
Query: 61 QEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVLVGNK 117
Q++ + Y + +G L+F V+S E + RE++ R+ +E +++ NK
Sbjct: 219 QDKIRPLWRHYFQNTQG--LIFVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFANK 275
Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKKDK 167
DL MN A E+ ++ + ++ T A + G+ + L +++ K
Sbjct: 276 QDLPN---AMN-AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 329
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 31.7 bits (73), Expect = 0.12
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 98 EQIKRVKDAEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFN--IPF---IKTSAKTRMGV 152
+K + +VP++LVGNK D +E + ++ +P SA V
Sbjct: 109 RALKPL--VGKVPILLVGNKLDA------AKYPEEAMKAYHELLPEAEPRMLSALDERQV 160
Query: 153 DDAFYTLVREIKK 165
L ++
Sbjct: 161 A----ELKADLLA 169
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 31.5 bits (72), Expect = 0.13
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 106 AEEVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI------PFIKTSAKTRMGVDD 154
+V ++V NK DL +D + EQ +I + S+ T+ G+
Sbjct: 158 TLQVEPLIVLNKIDL----LDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKP 208
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 30.7 bits (70), Expect = 0.19
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 17/74 (22%)
Query: 108 EVPMVLVGNKCDLSTWAVDMNQAQELAEQFNI-----------PFIKTSAKTRMGVDDAF 156
++P ++ NK D + QE+ FI SAK ++
Sbjct: 122 DIPTIVAVNKLD------KIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLK 175
Query: 157 YTLVREIKKDKMLR 170
+ I++ + R
Sbjct: 176 NRIFEVIRERQGRR 189
>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus
influenzae; hypothetical protein, structural genomics,
PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1
Length = 306
Score = 30.8 bits (69), Expect = 0.25
Identities = 26/148 (17%), Positives = 54/148 (36%), Gaps = 21/148 (14%)
Query: 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQV----VIDGETAL---LD 54
YK ++ G A L + + +D Y K + VID D
Sbjct: 2 YKCLIWGVNDEYTLAYDKLLFEISKGNLSIEALISKDKYAKYIDGKEVIDKTEISNYEFD 61
Query: 55 ILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
+ +E YS ++++ + G + + + K F ++ ++ + + ++
Sbjct: 62 YIIIFNKERYSDIKNEALELG---IPERKILNGKFFFISNFDFKRYCKLIENP---ITII 115
Query: 115 GNKCDLSTWAVDMNQAQELAEQFNIPFI 142
+ C W + + L +FN PFI
Sbjct: 116 SDDC----WGGLV--SSYLGFKFNSPFI 137
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 30.3 bits (69), Expect = 0.30
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 105 DAEEVPMVLVGNKCD---LSTWAVDMNQAQELAEQF--NIPFIKTSAKTRMGVDDA 155
+ ++++ K D +N +E F ++ S+ + GVD
Sbjct: 134 VDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKL 189
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 30.1 bits (67), Expect = 0.36
Identities = 28/184 (15%), Positives = 53/184 (28%), Gaps = 28/184 (15%)
Query: 7 VVVGAGGVGKSALTIQLIQ-----NHFVDEYDPTIEDSYRKQVVI----DGETALLDILD 57
+V GG GKS L +QL ++ + V+ D TA+ L
Sbjct: 34 ALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELP-----TGPVIYLPAEDPPTAIHHRLH 88
Query: 58 TAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNK 117
G + R + + E +K A E ++V +
Sbjct: 89 ALGAHLSAEERQAVADG-------LLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLD- 140
Query: 118 CDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGKEKKKR 177
+ N + +A+ +A T + + K + G +++
Sbjct: 141 TLRRFHIEEENASGPMAQVIG-RMEAIAADTGCSI-----VFLHHASKGAAMMGAGDQQQ 194
Query: 178 GISG 181
G
Sbjct: 195 ASRG 198
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 30.3 bits (68), Expect = 0.36
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 19/130 (14%)
Query: 57 DTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEE---VPMVL 113
D GQ++ + Y +G L+F V+ + I R+++ R+ + E +++
Sbjct: 372 DVGGQDKIRPLWRHYYTGTQG--LIFVVDCADR-DRIDEARQELHRIINDREMRDAIILI 428
Query: 114 VGNKCDLSTWAVDMNQAQELAEQFNIPFIK--------TSAKTRMGVDDAFYTLVREIKK 165
NK DL M E+ E+ + I+ + A + G+ + L K
Sbjct: 429 FANKQDLPD---AMK-PHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484
Query: 166 DKMLRGKEKK 175
K+ E
Sbjct: 485 -KLAAALEHH 493
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 29.9 bits (68), Expect = 0.43
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 108 EVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPF--IKTSAKTRMGVDDAFYTLVREIKK 165
+V V V N DL + LA IP+ K + G + ++ E
Sbjct: 119 DVVAV-VSNHPDL----------EPLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGA 167
Query: 166 D 166
+
Sbjct: 168 E 168
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 0.54
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-----DSYRKQVVIDGETALLDILD 57
+ ++ VG G+GKS L L F E + S + L I+
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 58 TAG 60
T G
Sbjct: 102 TVG 104
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 29.8 bits (68), Expect = 0.55
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEY 32
K+ ++G G VG +A+ LI D+Y
Sbjct: 3 KIGIIGLGNVG-AAVAHGLIAQGVADDY 29
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 29.4 bits (67), Expect = 0.56
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEY 32
K+ VVG G VG S L+ E
Sbjct: 2 KVGVVGTGFVG-STAAFALVLRGSCSEL 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 29.5 bits (67), Expect = 0.64
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 13/61 (21%)
Query: 108 EVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPF--IKTSAKTRMGVDDAFYTLVREIKK 165
++ V + N DL + + E +IP+ + K + LV +
Sbjct: 134 DIACV-ISNHQDL----------RSMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQA 182
Query: 166 D 166
D
Sbjct: 183 D 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 0.74
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFV---------DEYDPTIE-DSYRKQVVIDGETAL 52
E+ L+VVG G+GKS L L ++ + T++ ++ ++ G
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 53 LDILDTAGQEE 63
L ++DT G +
Sbjct: 78 LTVVDTPGYGD 88
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 29.0 bits (66), Expect = 0.77
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDE 31
+ KL V+GAG VG S L Q E
Sbjct: 5 VKPTKLAVIGAGAVG-STLAFAAAQRGIARE 34
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.0 bits (66), Expect = 0.79
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQL 23
M E + +VG VGK+ ++ L
Sbjct: 1 MKEKLVAIVGPTAVGKTKTSVML 23
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 29.2 bits (66), Expect = 0.80
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 40/97 (41%)
Query: 97 REQIKRVKDAEEVPMVLVGNKCD-LSTWAVDMNQA------------------------Q 131
+E + ++ P V+ NK D + W V +
Sbjct: 112 QEALNILRMYR-TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVG 170
Query: 132 ELAEQ-FN-------------IPFIKTSAKTRMGVDD 154
+L E+ F + I SA T G+ +
Sbjct: 171 KLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 0.89
Identities = 15/52 (28%), Positives = 22/52 (42%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLD 54
E+ L+VVG G+GKS L L P +K V ++ L+
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 29.0 bits (66), Expect = 0.89
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ VVG G VG A I ++ DE
Sbjct: 21 KITVVGVGAVG-MACAISILMKDLADE 46
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 29.2 bits (66), Expect = 0.91
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 6 LVVVGAGGVGKSALTIQL 23
+V+ G GVGKS L+IQL
Sbjct: 5 IVIAGTTGVGKSQLSIQL 22
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.2 bits (65), Expect = 0.97
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 6 LVVVGAGGVGKSALTIQLIQNH 27
L + G G GKS + Q +
Sbjct: 155 LFLHGRAGSGKSVIASQALSKS 176
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 28.7 bits (64), Expect = 1.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 6 LVVVGAGGVGKSALTIQL 23
LV++GA G GKS L+I L
Sbjct: 43 LVLMGATGTGKSRLSIDL 60
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 28.4 bits (63), Expect = 1.1
Identities = 10/115 (8%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 6 LVVVGAGGVGKSALTIQLIQNH---FVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQE 62
++V G GK+ L+ L + +D++++ + + + G
Sbjct: 8 IIVTGHPATGKTTLSQALATGLRLPLLS------KDAFKEVMFDGLGWSDREWSRRVGAT 61
Query: 63 EYSAMRD---QYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLV 114
+ +++G+ ++ E+++ + + +
Sbjct: 62 AIMMLYHTAATILQSGQSLIMESNFRVDL-------DTERMQNLHTIAPFTPIQI 109
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 28.5 bits (63), Expect = 1.2
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 6 LVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAGQEEYS 65
+VV+G G GK+ + + ++ + D++ I + + D
Sbjct: 32 VVVMGVSGSGKTTIAHGVADETGLEFAEA---DAFHSPENIATMQRGIPLTDEDRWPWLR 88
Query: 66 AMRDQ-YMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKD 105
++ + R G + +++K +YR+ ++
Sbjct: 89 SLAEWMDARADAGVSTIITCSALKR-----TYRDVLREGPP 124
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 28.6 bits (65), Expect = 1.2
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ +VG+G VG SA L E
Sbjct: 2 KVGIVGSGMVG-SATAYALALLGVARE 27
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 28.7 bits (65), Expect = 1.2
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ VVG G +G A T+ + D
Sbjct: 16 KITVVGGGELG-IACTLAISAKGIADR 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 89 SFEDIGSYREQIKRVKDAEEVPM 111
+EDIG +Q++ +++ E+P+
Sbjct: 15 RYEDIGGLEKQMQEIREVVELPL 37
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.6 bits (63), Expect = 1.4
Identities = 9/57 (15%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE--YDPTIEDSYRKQVVIDGETALLDILDTA 59
++++G+G V + + L N ++ T+ ++ + LD+ D +
Sbjct: 25 NVLLLGSGFVAQPVIDT-LAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDS 80
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 28.4 bits (64), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ VVG VG A I ++ DE
Sbjct: 23 KITVVGCDAVG-MADAISVLMKDLADE 48
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding
protein, guanosine, TP0319, transport protein; HET: GMP;
1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Length = 318
Score = 28.5 bits (64), Expect = 1.5
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 125 VDMNQAQELAEQFNIPFIKTSAKTRMGVDDAFYTLVREIKKDKMLRGK 172
VD +Q + + + TS R D A + + G+
Sbjct: 222 VDRDQYMDGVYDGSKSVVLTSMVKR--ADVAAERISKMAYDGSFPGGQ 267
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 28.2 bits (64), Expect = 1.7
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
++VV+GAG VG ++ L+ DE
Sbjct: 8 RVVVIGAGFVG-ASYVFALMNQGIADE 33
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 28.2 bits (64), Expect = 1.7
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ ++GAG VG ++ + +E
Sbjct: 9 KVAIIGAGFVG-ASAAFTMALRQTANE 34
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 28.0 bits (63), Expect = 1.7
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 110 PMVLVGNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKT 148
PMV+ NK D ++ + + E+ I TSA
Sbjct: 216 PMVIAANKADAAS-DEQIKRLVREEEKRGYIVIPTSAAA 253
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 28.2 bits (64), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+V++G G VG S+ L+ VDE
Sbjct: 8 KVVLIGNGAVG-SSYAFSLVNQSIVDE 33
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 28.2 bits (64), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ ++GAG VG S+ LI DE
Sbjct: 7 KVALIGAGFVG-SSYAFALINQGITDE 32
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 27.8 bits (63), Expect = 1.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
Query: 8 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG 48
+VG G GKS L +LIQ F Y P QV+IDG
Sbjct: 40 IVGRSGSGKSTL-TKLIQ-RF---YIPE-----NGQVLIDG 70
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase,
F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces
cerevisiae}
Length = 471
Score = 28.2 bits (62), Expect = 1.9
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 115 GNKCDLSTWAVDMNQAQELAEQFNIPFIKTSAKTRMGVDD--AFYTLVREIKKD 166
GN DLS N E + + ++++++ V+D + ++ + + D
Sbjct: 192 GNATDLSLLT---NATLEDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARAD 242
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 28.4 bits (63), Expect = 1.9
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 32 YDPTIEDSYRKQVVIDGETALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSMKSFE 91
+ + ED + DG + L++++D+ G ++S+ +R +G L+V E
Sbjct: 79 SEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT-----IE 133
Query: 92 DIGSYREQIKRVKDAEEVPMVLVGNKCD--LSTWAVDMNQAQE----LAEQFNIPFIKTS 145
+ E + R E + V+V NK D L V + E N+ + T
Sbjct: 134 GVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNV-IVSTY 192
Query: 146 AKTRMGVDD 154
A +G
Sbjct: 193 ADEVLGDVQ 201
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 27.9 bits (63), Expect = 1.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 6 LVVVGAGGVGKSALTIQL 23
+V+VG GK+ L+I++
Sbjct: 10 IVIVGPTASGKTELSIEV 27
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
subunit; heterodimer, beta-alpha-barrels,
oxidoreductase; HET: B12; 1.90A {Carboxydothermus
hydrogenoformans} PDB: 2ycl_A*
Length = 445
Score = 28.0 bits (62), Expect = 2.0
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 20/94 (21%)
Query: 42 KQVVIDGETAL--------------LDILDTAGQEEYSA-----MRDQYMRTGEGFLLVF 82
K + I ET L + + DT + E + + R G+ +
Sbjct: 71 KVLEIGHETVLFRHDKRFEHPCGLAILVEDTLSEGEIKERVEKINKLVFDRVGQMHSVNL 130
Query: 83 AVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGN 116
S +D ++ + + ++ ++P +L+G
Sbjct: 131 VALKGSS-QDAATFAKAVATAREVTDLPFILIGT 163
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Length = 292
Score = 28.0 bits (63), Expect = 2.0
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 108 EVPMVLVGNKCDLSTWAVDMNQAQELAEQFNIPF--IKTSAKTRMGVDDAFYTLVREIKK 165
++ + V N D LA Q +PF +A T+ + + +
Sbjct: 124 DIVGI-VSNHPDF----------APLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGA 172
Query: 166 D 166
+
Sbjct: 173 E 173
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 27.9 bits (63), Expect = 2.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+ +VG G VG S+ L+ F E
Sbjct: 2 KIGIVGLGRVG-SSTAFALLMKGFARE 27
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.1 bits (62), Expect = 2.4
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 8 VVGAGGVGKSALTIQLIQNHFVDEYDPTIED---SYRKQVV--IDGETALLDILDTAGQE 62
+ G G GKS L ++ I N VD + PT E+ Y + + +T++LD + +G
Sbjct: 466 ICGPNGCGKSTL-MRAIANGQVDGF-PTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVG 523
Query: 63 EYSAMRDQYMRTG 75
A++D+ + G
Sbjct: 524 TKEAIKDKLIEFG 536
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 28.0 bits (61), Expect = 2.4
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETAL-LDILDTA 59
MA ++++G+G V + L + V T+E + + + T + LD+ D A
Sbjct: 1 MATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDA 60
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.7 bits (61), Expect = 2.4
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED 38
MA +V VG G GK+ LT + D Y +
Sbjct: 12 MASMIVVFVGTAGSGKTTLT-GEFGRYLEDNYKVAYVN 48
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 27.5 bits (62), Expect = 2.8
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+++VG G VG S+ ++ E
Sbjct: 11 KVILVGDGAVG-SSYAYAMVLQGIAQE 36
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 27.6 bits (62), Expect = 3.0
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 28 FVDEYDPTIEDSYRKQVVIDGE---TALLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAV 84
+ +++ DGE L +IL+ G + + + MR +L+
Sbjct: 55 LAPSLYENVVNNFPATFWHDGENPYAKLREILEELGISKGRILIEDTMRAD--WLIGIMK 112
Query: 85 NSMKSFEDIGSYREQIKRVKDAEEV 109
+F+ + S ++++ +KD EEV
Sbjct: 113 LGKFTFQPLSSLIKELRMIKDKEEV 137
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 27.0 bits (60), Expect = 3.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 5 KLVVVGAGGVGKSALT 20
KL V G GGVGK+ +
Sbjct: 2 KLAVAGKGGVGKTTVA 17
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 27.1 bits (61), Expect = 3.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
K+V+VG G VG S+ + Q +E
Sbjct: 7 KVVLVGDGAVG-SSYAFAMAQQGIAEE 32
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 6/34 (17%)
Query: 53 LDIL-DTAGQEEYSAMRDQYMRTGEGFLLVFAVN 85
D+L + AG M Y T +GF N
Sbjct: 87 ADVLINNAG-----IMAVPYALTVDGFESQIGTN 115
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 26.8 bits (60), Expect = 4.0
Identities = 6/19 (31%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 5 KLVVVGAGGVGKSALTIQL 23
++++VG G V L Q+
Sbjct: 145 EVLIVGFGAVN--NLLTQM 161
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 26.3 bits (59), Expect = 4.0
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV----------VIDGETALLD 54
+++ G G VG L L + +D + D + VI+G+ +
Sbjct: 6 YIIIAGIGRVG-YTLAKSLSE----KGHDIVLIDIDKDICKKASAEIDALVINGDCTKIK 60
Query: 55 ILDTAGQEE 63
L+ AG E+
Sbjct: 61 TLEDAGIED 69
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 27.1 bits (60), Expect = 4.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 89 SFEDIGSYREQIKRVKDAEEVPM 111
++DIG R+Q+ ++K+ E+P+
Sbjct: 202 GYDDIGGCRKQLAQIKEMVELPL 224
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 26.9 bits (59), Expect = 4.2
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTA 59
K++++GAG +G++ L V D E+ + + +D +
Sbjct: 18 KVLILGAGNIGRAIAWD-LKDEFDVYIGDVNNENLEKVKEFAT--PLKVDASNFD 69
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 27.0 bits (60), Expect = 4.5
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQN 26
+VVVG+GG G SA I +
Sbjct: 126 TVDVVVVGSGGAGFSA-AISATDS 148
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 27.0 bits (59), Expect = 4.6
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 92 DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV----DMNQAQELAEQFNIPFIKTSA 146
D+ ++ I K AE + + + +L+ +M +EL E I +
Sbjct: 159 DLKKLQKLIDE-KGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDAT 216
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 26.7 bits (60), Expect = 5.0
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 79 LLVFAVNSMKSF--EDIGSYREQIKRVKDAEEVPMVLVGNKCDL-STWAVDMNQAQELAE 135
+++F +++ + + D Y+ IK + P+++V NK D + E+ +
Sbjct: 95 VILFMIDATEGWRPRDEEIYQNFIKPLN----KPVIVVINKIDKIGPAKNVLPLIDEIHK 150
Query: 136 QFNIP--FIKTSAKTRMGVDDAFYTLVREIKK 165
+ + SA +D LV+ I K
Sbjct: 151 KHPELTEIVPISALKGANLD----ELVKTILK 178
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase;
HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 26.7 bits (60), Expect = 5.2
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHFVDE 31
KL VGAG VG S + N VDE
Sbjct: 2 KLGFVGAGRVG-STSAFTCLLNLDVDE 27
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.5 bits (58), Expect = 5.4
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 3 EYKLVVVGAGGVGKSALTIQLI-QNHFVDEYDPTIEDSYRKQVVIDGETALLDILDTAG- 60
+ ++V+VG G GKSA ++ + F ++ + L ++DT G
Sbjct: 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGI 88
Query: 61 -------QEEYSAMRDQYMRTGEG---FLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVP 110
E + + T G LLV + + E+ + + +K +
Sbjct: 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSF 147
Query: 111 MVLVGNKCD 119
M+L+ + D
Sbjct: 148 MILIFTRKD 156
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET:
DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11
PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Length = 296
Score = 26.5 bits (59), Expect = 5.7
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 6 LVVVGAG-GVGKSALTIQLIQNHFVDEYDP 34
+++V +G G+GKS Q
Sbjct: 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKK 66
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 26.4 bits (59), Expect = 5.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 6 LVVVGAGGVGKSALTIQLIQNH 27
LV++GA GVG+S + L+ +
Sbjct: 22 LVLIGASGVGRSHIKNALLSQN 43
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 26.0 bits (58), Expect = 5.8
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 5 KLVVVGAGGVGKSALTIQLIQNHF---VDEYDPT----IEDSYRKQVVIDGETALLDILD 57
+V+ G G +G S + + V + + + + V+ G+ A + L
Sbjct: 21 YIVIFGCGRLG-SLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVV-GDAAEFETLK 78
Query: 58 TAGQEE 63
G E+
Sbjct: 79 ECGMEK 84
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 26.3 bits (58), Expect = 6.6
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 6 LVVVGAGGVGKSALTIQL 23
++ G GK+ + IQ+
Sbjct: 4 HLIYGPTCSGKTDMAIQI 21
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 26.1 bits (58), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 6 LVVVGAGGVGKSALTIQL 23
L+V GAGGVG A +Q+
Sbjct: 176 LIVGGAGGVGSIA--VQI 191
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET:
AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP:
c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C*
3clt_C* 3clu_C*
Length = 264
Score = 26.0 bits (58), Expect = 7.2
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 100 IKRVKDAEEVPMVLVGNKCDLSTWAVD--MNQ-AQELAEQFNIPFIKTSAKTRMGVDDAF 156
+ V E MV G + + D +A N P A + D
Sbjct: 104 LTEVIKKEAPDMVFAGVQ------SSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNK 157
Query: 157 YTLVREI 163
+ RE+
Sbjct: 158 AVIRREL 164
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 26.3 bits (59), Expect = 7.2
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 1 MAEYKLVVVGAG--GVGKSALTIQL 23
M+ + G GK+ L + L
Sbjct: 1 MSSLPPAIFLMGPTAAGKTDLAMAL 25
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 26.3 bits (58), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 1 MAE-YKLVVVGAGGVGKSAL 19
M E Y +VVVG G VG +
Sbjct: 1 MTESYDVVVVGGGPVGLATA 20
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 26.4 bits (57), Expect = 7.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 1 MAEYKLVVVGAGGVGKSALTIQLIQNH 27
M K+ ++GAG S + +
Sbjct: 1 MPSVKIGIIGAGSAVFSLRLVSDLCKT 27
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 26.3 bits (59), Expect = 7.5
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 6 LVVVGAGGVGKSALTIQL 23
+ ++G GK+AL I+L
Sbjct: 13 IFLMGPTASGKTALAIEL 30
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding,
carbohydrate metabolism, magnesium, metal-binding,
multifunctional enzyme; 2.60A {Lactobacillus casei}
PDB: 1jb1_A 1kkl_A 1kkm_A*
Length = 205
Score = 26.1 bits (57), Expect = 7.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 6 LVVVGAGGVGKSALTIQLIQNHF 28
+++ G GVGKS ++L+Q
Sbjct: 37 VLITGDSGVGKSETALELVQRGH 59
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 25.9 bits (58), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 6 LVVVGAGGVGKSALTIQLIQNH 27
LV++GA GVG+ + LI H
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKH 29
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 26.1 bits (57), Expect = 7.8
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 69 DQYMRTGEGFLLVFAVNSMKSFEDIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAVDM- 127
D+ + L+ AV + +++ ++ + AE++ L ++ + D
Sbjct: 226 DKVVSGSCKILVFVAVEILL------TFKIKVMALNSAEKITKFL----ENIPQDSSDAI 275
Query: 128 -NQAQELAEQFN 138
++A +L +
Sbjct: 276 VSKAIDLWHKHC 287
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 26.2 bits (58), Expect = 8.2
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 3 EYKLVVVGAGGVGKSA 18
+Y L+++G+G VG +A
Sbjct: 2 KYDLIIIGSGSVGAAA 17
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold,
structural genomics, protein structure initiative, PSI;
NMR {Escherichia coli} SCOP: d.58.54.1
Length = 109
Score = 25.2 bits (55), Expect = 8.2
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS 39
+ V+G ++++Q H +Y PT++ S
Sbjct: 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPS 72
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 26.0 bits (57), Expect = 8.4
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 108 EVPMVLVGNKCDLSTW------AVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFY 157
E+ ++ K D + A +L ++ + I+ SA++ G+ + +
Sbjct: 212 EMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISE-MW 270
Query: 158 TLVREIKKDKMLRGKEKKKR 177
+++ + + G+ KR
Sbjct: 271 DKMKDFQDLMLASGELTAKR 290
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A,
GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter
vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Length = 220
Score = 25.8 bits (57), Expect = 8.5
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 1 MAEYKLVVVGAGGVGKSAL 19
+A +V++G GG K +
Sbjct: 10 LAIGGVVIIGGGGHAKVVI 28
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 26.0 bits (57), Expect = 8.9
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 108 EVPMVLVGNKCDLSTW------AVDMNQAQEL----AEQFNIPFIKTSAKTRMGVDDAFY 157
E+ ++V NK D A +++ A L + P + SA G+ + +
Sbjct: 217 ELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAE-LW 275
Query: 158 TLVREIKKDKMLRGKEKKKR 177
V ++ G+ +R
Sbjct: 276 DTVERHRQVLTGAGEFDARR 295
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 26.0 bits (58), Expect = 9.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 3 EYKLVVVGAGGVGKSAL 19
Y ++VG GG G +
Sbjct: 21 SYDAIIVGGGGHGLATA 37
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 25.4 bits (55), Expect = 9.5
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 6 LVVVGAGGVGKSALTIQLIQNHF 28
+++ G +GKS L++ LI
Sbjct: 19 VLITGEANIGKSELSLALIDRGH 41
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 25.9 bits (56), Expect = 9.6
Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 92 DIGSYREQIKRVKDAEEVPMVLVGNKCDLSTWAV----DMNQAQELAEQFNIPFI 142
DI +E I + A+ + ++ C+ + ++ + E+A+Q I +
Sbjct: 168 DIKKLKENIAQ-HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVV 221
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 25.8 bits (57), Expect = 9.6
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 3 EYKLVVVGAGGVGKSALTIQLIQN 26
+V++G+GG G +A +
Sbjct: 126 TTDVVIIGSGGAGLAA-AVSARDA 148
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 25.9 bits (57), Expect = 10.0
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 128 NQAQELAEQFNIPFI--KTSAKTRMGVDDAF 156
+++ F IP I +TS + R + + F
Sbjct: 360 ELVYRISKVFLIPAITHRTSREEREEILEGF 390
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,963,790
Number of extensions: 177979
Number of successful extensions: 1476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1236
Number of HSP's successfully gapped: 279
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)