Query psy11137
Match_columns 831
No_of_seqs 244 out of 320
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 18:56:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v46_A Cell division control p 100.0 5E-36 1.7E-40 294.9 10.7 142 15-171 9-161 (170)
2 3zyj_A Leucine-rich repeat-con 74.0 1 3.5E-05 48.0 1.5 35 796-830 31-68 (440)
3 3zyi_A Leucine-rich repeat-con 71.0 1.3 4.6E-05 47.3 1.5 35 796-830 42-79 (452)
4 4ifa_A Extracellular protein c 26.7 46 0.0016 36.0 4.1 80 62-145 76-159 (339)
5 3tov_A Glycosyl transferase fa 23.4 50 0.0017 34.7 3.6 93 85-191 187-286 (349)
6 4h0a_A Uncharacterized protein 19.5 62 0.0021 34.5 3.3 32 82-113 88-119 (323)
7 2gt1_A Lipopolysaccharide hept 18.1 76 0.0026 32.2 3.5 92 83-191 179-278 (326)
8 1eyo_A Conotoxin TVIIA; cystin 15.9 46 0.0016 24.2 0.8 8 797-804 6-13 (30)
9 3syn_E ATP-binding protein YLX 14.4 43 0.0015 23.0 0.3 9 757-765 2-10 (23)
10 3ra3_A P1C; coiled coil domain 13.1 1E+02 0.0035 22.0 1.9 12 641-652 14-25 (28)
No 1
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=100.00 E-value=5e-36 Score=294.87 Aligned_cols=142 Identities=24% Similarity=0.489 Sum_probs=117.6
Q ss_pred CCCCCCCEEEecCCccceeecccchHHHHHc-------C-CCCCCeEEEEeecCC-CceeeEEEEeCCCCCC-CCCCCeE
Q psy11137 15 KRISRTPIIIIPAANTSLITMFVTTEAKRAA-------G-SKRENEILIQRSKGD-GTTVPYRVIDNPLKLA-RTDWDRV 84 (831)
Q Consensus 15 kr~~k~PIIIVPss~TSLITL~Ni~d~l~~~-------g-~~~~~~V~I~R~~~~-g~~v~yrVVDn~~~f~-pedWdRV 84 (831)
....++||||||+|+||||||+|+++||+.. . ....++|+|+|+... +.+++|+||||+.+|+ ||||+||
T Consensus 9 ~~~~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~~~~~~v~I~r~~~~~~~~~~f~VVD~~~~~tkpe~W~RV 88 (170)
T 3v46_A 9 GGPRKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPSVPNGLVNIEKNFERISRPIRFIIVDNTRMFTKPEYWDRV 88 (170)
T ss_dssp --CCSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCCCTTSEEEEEECCTTSSSCEEEEEESSSTTCCSGGGGGGE
T ss_pred CCCCCCCEEEECCCccchhhHHHHHHHHhcCeecChhhcccCCCCeEEEEEecCCCCcceEEEEEEChHHcCCccCCceE
Confidence 3456899999999999999999999999753 1 123467889888653 6899999999999995 8999999
Q ss_pred EEEEeeCCcccccCCCCCCChHHHhhhcceeEEeeeccCCcceeEeccccccccccc-ceeEeeccCCCCccceeehhhH
Q psy11137 85 VAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNT-NYLHYQSSREGAVKKYYTLECL 163 (831)
Q Consensus 85 VAVFvtGq~WQFK~wpw~~dP~eLF~~V~Gfyv~f~~de~ds~VIFGd~a~pk~VkT-ny~~~~~~~~g~~~eyYtLesl 163 (831)
|||||+|++||||+|||+ +|++||+++||||++|+++. .|.+|+. |..+....|. +-+=.-+++
T Consensus 89 VAVFv~G~~WQFk~w~~~-~P~elF~~v~Gf~~~~~~~~-----------~p~~v~~WnV~~l~l~r~---kRh~D~~~~ 153 (170)
T 3v46_A 89 VAIFTTGHTWQFNNYQWN-SPQELFQRCKGYYFHFAGDS-----------VPQHVQQWNVEKVELDKN---KRFKDVEVV 153 (170)
T ss_dssp EEEECCSCGGGGTTSSSC-SHHHHHHHSEEEEEEETTSC-----------CCHHHHHSSEEEEEECSS---CCTTHHHHH
T ss_pred EEEEeECchhhcCCCCCC-ChHHHhccceEEEEEecCCC-----------CChhHhhCCCEEEEeCcC---ccccHHHHH
Confidence 999999999999999999 99999999999999999888 5556665 6666666664 344567888
Q ss_pred HHHHhccC
Q psy11137 164 LFFLKNIG 171 (831)
Q Consensus 164 lf~lkn~~ 171 (831)
..||+.++
T Consensus 154 ~~FW~~Le 161 (170)
T 3v46_A 154 RYFWHSLE 161 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 2
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=73.98 E-value=1 Score=48.03 Aligned_cols=35 Identities=31% Similarity=0.708 Sum_probs=27.6
Q ss_pred cCCCCCCcceEec--cccchhhhhccccC-CCCCCCCC
Q psy11137 796 TEPQCPFRCICFR--TTVRCMFQHLEYVP-RVSNDTTI 830 (831)
Q Consensus 796 ~~~~CP~~C~C~~--ttVrC~~~~l~~ip-~vp~~t~~ 830 (831)
.+..||+.|.|.. .+|.|....|..|| .+|..+++
T Consensus 31 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~ 68 (440)
T 3zyj_A 31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRL 68 (440)
T ss_dssp --CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSE
T ss_pred ccccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcE
Confidence 4567999999984 57999999999998 67766553
No 3
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=70.98 E-value=1.3 Score=47.32 Aligned_cols=35 Identities=29% Similarity=0.595 Sum_probs=27.6
Q ss_pred cCCCCCCcceEec--cccchhhhhccccC-CCCCCCCC
Q psy11137 796 TEPQCPFRCICFR--TTVRCMFQHLEYVP-RVSNDTTI 830 (831)
Q Consensus 796 ~~~~CP~~C~C~~--ttVrC~~~~l~~ip-~vp~~t~~ 830 (831)
....||+.|.|.. .+|.|....|..|| .+|...+.
T Consensus 42 ~~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~ 79 (452)
T 3zyi_A 42 GPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRY 79 (452)
T ss_dssp --CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSE
T ss_pred CcCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccE
Confidence 4567999999984 67999999999998 57766553
No 4
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=26.65 E-value=46 Score=36.02 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=47.4
Q ss_pred CceeeEEEEe-CCCCC---CCCCCCeEEEEEeeCCcccccCCCCCCChHHHhhhcceeEEeeeccCCcceeEeccccccc
Q psy11137 62 GTTVPYRVID-NPLKL---ARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPK 137 (831)
Q Consensus 62 g~~v~yrVVD-n~~~f---~pedWdRVVAVFvtGq~WQFK~wpw~~dP~eLF~~V~Gfyv~f~~de~ds~VIFGd~a~pk 137 (831)
.....+.|-+ +...| .=++ ++||+||++|+.+..++++....-.+||++ .+|+-.+.-...+..+.|-- -..
T Consensus 76 ~ygy~w~vY~~~~~~y~~vgv~~-~kVv~~y~~g~~~~~~p~kiG~s~~~v~~~-~~~~~~~~i~~~~~~y~fel--see 151 (339)
T 4ifa_A 76 AYGYEWWVYNQDLAQYVQFGVAE-RKVVTAYVAGEQVKVPPYYINEKYEDVYKK-NPLSHEISLKRGKNSYQFEL--SDT 151 (339)
T ss_dssp TTSCEEEEECSSGGGCEEEEEET-TEEEEEEECCTTSCBTTBCTTCBHHHHHHH-SCCCSEEEEEETTEEEEEEC--CHH
T ss_pred CCCceEEEEcCCCCcEEEEEEEC-CEEEEEEECCCccccCCcccCCCHHHHHHh-cCCCCceEEEeCCcEEEEEe--ccc
Confidence 3445555554 22333 2233 999999999999999998887677888887 45544443333344444431 123
Q ss_pred ccccceeE
Q psy11137 138 DVNTNYLH 145 (831)
Q Consensus 138 ~VkTny~~ 145 (831)
+.+|..++
T Consensus 152 d~~~rplv 159 (339)
T 4ifa_A 152 EVMEQPLV 159 (339)
T ss_dssp HHHHSCEE
T ss_pred cccccceE
Confidence 44554444
No 5
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=23.42 E-value=50 Score=34.68 Aligned_cols=93 Identities=16% Similarity=0.208 Sum_probs=54.3
Q ss_pred EEEEeeCCcccccCCCCCC--ChHHHhhhcceeEEeeeccCCcceeEecccccccccccceeEeeccCCCCccceeehhh
Q psy11137 85 VAVFVMGPAWQFKGWPWDA--NPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLEC 162 (831)
Q Consensus 85 VAVFvtGq~WQFK~wpw~~--dP~eLF~~V~Gfyv~f~~de~ds~VIFGd~a~pk~VkTny~~~~~~~~g~~~eyYtLes 162 (831)
+.+|.-|..|..|.||.+. ...+.+..- |+.+.+.+.+.+... ... +-.....+.... -|+ .+|.-
T Consensus 187 ~i~i~pga~~~~k~wp~~~~~~l~~~l~~~-g~~vvl~g~~~e~~~--~~~-i~~~~~~~~~~l----~g~----~sl~e 254 (349)
T 3tov_A 187 LIGFNIGSAVPEKRWPAERFAHVADYFGRL-GYKTVFFGGPMDLEM--VQP-VVEQMETKPIVA----TGK----FQLGP 254 (349)
T ss_dssp EEEEECCCSSGGGCCCHHHHHHHHHHHHHH-TCEEEECCCTTTHHH--HHH-HHHTCSSCCEEC----TTC----CCHHH
T ss_pred EEEEeCCCCCccCCCCHHHHHHHHHHHHhC-CCeEEEEeCcchHHH--HHH-HHHhcccccEEe----eCC----CCHHH
Confidence 3445578889999998540 344444332 665555443321110 000 000111222333 144 68999
Q ss_pred HHHHHhccC-----CchhHHHHHHHhcCCCcccC
Q psy11137 163 LLFFLKNIG-----LNHTAYVRKAAASNIPVVPR 191 (831)
Q Consensus 163 llf~lkn~~-----l~H~~Yvr~A~a~~ip~V~r 191 (831)
+.-++++.+ -+++..+ |+|.|+|+|..
T Consensus 255 ~~ali~~a~~~i~~DsG~~Hl--Aaa~g~P~v~l 286 (349)
T 3tov_A 255 LAAAMNRCNLLITNDSGPMHV--GISQGVPIVAL 286 (349)
T ss_dssp HHHHHHTCSEEEEESSHHHHH--HHTTTCCEEEE
T ss_pred HHHHHHhCCEEEECCCCHHHH--HHhcCCCEEEE
Confidence 999999988 4788888 89999999974
No 6
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=19.47 E-value=62 Score=34.53 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=28.1
Q ss_pred CeEEEEEeeCCcccccCCCCCCChHHHhhhcc
Q psy11137 82 DRVVAVFVMGPAWQFKGWPWDANPVEIFSKNL 113 (831)
Q Consensus 82 dRVVAVFvtGq~WQFK~wpw~~dP~eLF~~V~ 113 (831)
++||+||++|..|..+++.....-.+||++..
T Consensus 88 ~kVv~iy~~g~~~~~~p~~iG~s~~~v~~~~~ 119 (323)
T 4h0a_A 88 EEIVSVYATGEKVNVSPLKIGQHSAEIFNHTS 119 (323)
T ss_dssp TEEEEEEEESSSCCCTTCCTTSBGGGTTTSCC
T ss_pred CEEEEEEECCCccccCCcccCCCHHHHHHhcC
Confidence 89999999999999999998756778888764
No 7
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=18.09 E-value=76 Score=32.22 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=53.6
Q ss_pred eEEEEEeeCCcccccCCCCCCChHHHhhhc--ceeEEeee-ccCCcceeEecccccccccccceeEeeccCCCCccceee
Q psy11137 83 RVVAVFVMGPAWQFKGWPWDANPVEIFSKN--LAVSRNFI-QTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYT 159 (831)
Q Consensus 83 RVVAVFvtGq~WQFK~wpw~~dP~eLF~~V--~Gfyv~f~-~de~ds~VIFGd~a~pk~VkTny~~~~~~~~g~~~eyYt 159 (831)
.+|+ |.-|..|..|.||.+ .-.+|-..+ .|+.+.+. +.+.+... .+. +-... .+.... |+ .+
T Consensus 179 ~~i~-l~pga~~~~k~wp~~-~~~~l~~~L~~~~~~vvl~~g~~~e~~~--~~~-i~~~~-~~~~l~-----g~----~s 243 (326)
T 2gt1_A 179 EYAV-FLHATTRDDKHWPEE-HWRELIGLLADSGIRIKLPWGAPHEEER--AKR-LAEGF-AYVEVL-----PK----MS 243 (326)
T ss_dssp SEEE-EECCCSSGGGSCCHH-HHHHHHHHTTTTCCEEEECCSSHHHHHH--HHH-HHTTC-TTEEEC-----CC----CC
T ss_pred CEEE-EEeCCCCccccCCHH-HHHHHHHHHHHCCCcEEEecCCHHHHHH--HHH-HHhhC-Cccccc-----CC----CC
Confidence 4554 456778999999965 444554443 35554443 21111000 000 00000 011222 33 68
Q ss_pred hhhHHHHHhccCC-----chhHHHHHHHhcCCCcccC
Q psy11137 160 LECLLFFLKNIGL-----NHTAYVRKAAASNIPVVPR 191 (831)
Q Consensus 160 Lesllf~lkn~~l-----~H~~Yvr~A~a~~ip~V~r 191 (831)
|.-+.-++++.++ +++..+ |+|.|+|+|..
T Consensus 244 l~el~ali~~a~l~I~~DSG~~Hl--Aaa~g~P~v~l 278 (326)
T 2gt1_A 244 LEGVARVLAGAKFVVSVDTGLSHL--TAALDRPNITV 278 (326)
T ss_dssp HHHHHHHHHTCSEEEEESSHHHHH--HHHTTCCEEEE
T ss_pred HHHHHHHHHhCCEEEecCCcHHHH--HHHcCCCEEEE
Confidence 9999999999984 788888 88899999986
No 8
>1eyo_A Conotoxin TVIIA; cystine knot motif; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1
Probab=15.89 E-value=46 Score=24.19 Aligned_cols=8 Identities=38% Similarity=1.223 Sum_probs=6.2
Q ss_pred CCCCCCcc
Q psy11137 797 EPQCPFRC 804 (831)
Q Consensus 797 ~~~CP~~C 804 (831)
...|||.|
T Consensus 6 ~srcpp~c 13 (30)
T 1eyo_A 6 DSRCPPVC 13 (30)
T ss_dssp TSSCSSSB
T ss_pred CCCCCchh
Confidence 45799988
No 9
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=14.44 E-value=43 Score=22.98 Aligned_cols=9 Identities=56% Similarity=0.792 Sum_probs=7.0
Q ss_pred cccchhhhh
Q psy11137 757 VYNRYDQER 765 (831)
Q Consensus 757 ~y~rydqer 765 (831)
+.|||||--
T Consensus 2 qmnrydqaa 10 (23)
T 3syn_E 2 QMNRYDQAA 10 (26)
T ss_pred ccchHHHHH
Confidence 579999953
No 10
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=13.11 E-value=1e+02 Score=22.00 Aligned_cols=12 Identities=50% Similarity=0.562 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHh
Q psy11137 641 EKIAAIKAKRLA 652 (831)
Q Consensus 641 ekiaaikaK~~a 652 (831)
.||||||.|.-.
T Consensus 14 qkiaalkqkias 25 (28)
T 3ra3_A 14 QKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 589999988654
Done!