Query psy11137
Match_columns 831
No_of_seqs 244 out of 320
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 18:57:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11137.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11137hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v4ja1 d.58.1.5 (A:242-322) D 45.9 3.4 0.00024 34.7 1.4 22 795-816 38-68 (81)
2 d3c7ba1 d.58.1.5 (A:239-304) D 41.6 4.3 0.00032 32.8 1.4 40 760-816 5-53 (66)
3 d1eyoa_ g.3.6.1 (A:) Conotoxin 27.7 7.6 0.00055 26.4 0.5 16 797-820 6-21 (30)
4 d1mkaa_ d.38.1.2 (A:) beta-Hyd 15.3 13 0.00097 33.8 -0.5 73 66-139 32-122 (171)
5 d1nd9a_ a.6.1.6 (A:) N-termina 14.8 61 0.0045 24.3 3.3 32 171-202 13-49 (49)
6 d1vyda_ a.3.1.1 (A:) Cytochrom 13.5 76 0.0055 26.5 4.1 42 158-203 67-113 (116)
7 d1dmfa_ g.46.1.1 (A:) Metallot 12.4 26 0.0019 23.3 0.4 14 797-810 2-15 (28)
8 d1nd9a_ a.6.1.6 (A:) N-termina 11.4 62 0.0045 24.3 2.4 34 526-559 11-49 (49)
9 d1cota_ a.3.1.1 (A:) Cytochrom 10.4 1.4E+02 0.01 24.6 4.8 45 155-203 67-116 (121)
10 d1a62a1 a.140.3.1 (A:1-47) Rho 8.5 96 0.007 22.9 2.5 30 526-555 6-35 (47)
No 1
>d2v4ja1 d.58.1.5 (A:242-322) DsrA insert domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=45.93 E-value=3.4 Score=34.68 Aligned_cols=22 Identities=32% Similarity=0.821 Sum_probs=16.4
Q ss_pred ccCCCCCCcceEeccc---------cchhhh
Q psy11137 795 STEPQCPFRCICFRTT---------VRCMFQ 816 (831)
Q Consensus 795 ~~~~~CP~~C~C~~tt---------VrC~~~ 816 (831)
.+-..||.+|+-+... |||||=
T Consensus 38 eVv~~CPT~cm~~d~~~L~Idn~~C~RCMHC 68 (81)
T d2v4ja1 38 EVVNRCPSKCMKWDGSKLSIDNKECVRCMHC 68 (81)
T ss_dssp HTGGGCTTCCEEECSSCEEECGGGCCCCSHH
T ss_pred chhccCCHhhccccCCeeEEeCcccccCcCc
Confidence 3455699999998543 789983
No 2
>d3c7ba1 d.58.1.5 (A:239-304) DsrA insert domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=41.59 E-value=4.3 Score=32.82 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=26.3
Q ss_pred chhhhhhcccccccCCeeeeeccccceeEEEeeccccCCCCCCcceEeccc---------cchhhh
Q psy11137 760 RYDQERFIKSREETEGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTT---------VRCMFQ 816 (831)
Q Consensus 760 rydqerf~~~keet~gfkidt~gtyh~~~~~~~~~~~~~~CP~~C~C~~tt---------VrC~~~ 816 (831)
|-||+-+ |+=-+||-|. ..+-..||.+|.-+... |||||=
T Consensus 5 rIDQ~~V---k~Y~~g~dI~--------------~eVv~~CPT~cm~~dg~~L~Idn~~CvRCMHC 53 (66)
T d3c7ba1 5 KVDQEAV---KEYASWMDIE--------------NEVVKLCPTGAIKWDGKELTIDNRECVRCMHC 53 (66)
T ss_dssp EECHHHH---HHHHTTSCHH--------------HHTGGGCTTCCEEECSSCEEECTTTCCCCCHH
T ss_pred eecHHHH---HHHHHhcchh--------------hhhhccCccccccccCCEEEEcCcccCccccc
Confidence 5688888 4444565543 23445699999887433 789983
No 3
>d1eyoa_ g.3.6.1 (A:) Conotoxin {Conus tulipa, T VIIa [TaxId: 6495]}
Probab=27.73 E-value=7.6 Score=26.35 Aligned_cols=16 Identities=31% Similarity=0.708 Sum_probs=11.1
Q ss_pred CCCCCCcceEeccccchhhhhccc
Q psy11137 797 EPQCPFRCICFRTTVRCMFQHLEY 820 (831)
Q Consensus 797 ~~~CP~~C~C~~ttVrC~~~~l~~ 820 (831)
...||+.| ||-+|+.+
T Consensus 6 dsrcppvc--------cmglmcsr 21 (30)
T d1eyoa_ 6 DSRCPPVC--------CMGLMCSR 21 (30)
T ss_dssp TSSCSSSB--------CTTBCCSS
T ss_pred cCCCCcee--------EeeeeecC
Confidence 34699887 77777654
No 4
>d1mkaa_ d.38.1.2 (A:) beta-Hydroxydecanol thiol ester dehydrase {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=13 Score=33.81 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=52.6
Q ss_pred eEEEEeCCCCCCCCCC----CeEEEEE-eeCCcccccCCCCCCCh-------HHHhhhcceeEEeeeccC------Ccce
Q psy11137 66 PYRVIDNPLKLARTDW----DRVVAVF-VMGPAWQFKGWPWDANP-------VEIFSKNLAVSRNFIQTT------SCNQ 127 (831)
Q Consensus 66 ~yrVVDn~~~f~pedW----dRVVAVF-vtGq~WQFK~wpw~~dP-------~eLF~~V~Gfyv~f~~de------~ds~ 127 (831)
+|..||-+..+.++-| ..++|.- ++..+|=|+++-.+ +| .|-..+.+|+|+.+.+.+ ..+.
T Consensus 32 P~L~iDrV~~i~~~~g~~~~g~i~~~k~v~~~ewff~gHFp~-~PvmPGvL~iEa~aQ~~~~l~~~~~~~~~~~~~~i~~ 110 (171)
T d1mkaa_ 32 NMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIG-DPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGE 110 (171)
T ss_dssp TTCCCSEEEEEESSCTTTTSCEEEEEEECCTTSGGGGTTTTT-SCCCCHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESC
T ss_pred CEEeEEEEEEEcCCCCccccceeEEEEecccccceecccccC-cCcCCHHHHHHHHHHHHhHhheecCCCCceEEeecce
Confidence 7899999888877665 3678876 79999999999877 65 455556677777666554 2345
Q ss_pred eEeccccccccc
Q psy11137 128 IIFGEFSWPKDV 139 (831)
Q Consensus 128 VIFGd~a~pk~V 139 (831)
+.|-.-+.|-+.
T Consensus 111 ~kfr~~V~Pgd~ 122 (171)
T d1mkaa_ 111 VKFTGQVLPTAK 122 (171)
T ss_dssp EEECSCCCTTCC
T ss_pred eeEeccccCCCe
Confidence 566666666553
No 5
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=14.80 E-value=61 Score=24.32 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=21.7
Q ss_pred CCchhHHHHHHHhcCCC-----cccCCchhhHHHHhc
Q psy11137 171 GLNHTAYVRKAAASNIP-----VVPRPYRKDILAYLN 202 (831)
Q Consensus 171 ~l~H~~Yvr~A~a~~ip-----~V~rpDRkdllayL~ 202 (831)
+.+--..+.+-..|||+ .|+--|.+-||+|||
T Consensus 13 ~~~vd~Ll~Ql~~AGl~ks~~D~vt~~eK~~LL~~Ln 49 (49)
T d1nd9a_ 13 QTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLN 49 (49)
T ss_dssp SSSHHHHHHHHHHHTSCCSSSSCEETTGGGHHHHHHC
T ss_pred CcCHHHHHHHHHHcCCCCCCCCccCHHHHHHHHHhhC
Confidence 33444445555555555 577888999999997
No 6
>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}
Probab=13.54 E-value=76 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.2
Q ss_pred eehhhHHHHHhccCCchhHHHHHHHhcCCC-----cccCCchhhHHHHhcC
Q psy11137 158 YTLECLLFFLKNIGLNHTAYVRKAAASNIP-----VVPRPYRKDILAYLNG 203 (831)
Q Consensus 158 YtLesllf~lkn~~l~H~~Yvr~A~a~~ip-----~V~rpDRkdllayL~G 203 (831)
.|-|.|.-||+|- ..||+.......| .....||.||+|||..
T Consensus 67 w~~~~L~~~l~~P----~~~~~~~~~~~~p~t~M~~~g~~d~~dliAYL~s 113 (116)
T d1vyda_ 67 WTEEDIATYVKDP----GAFLKEKLDDKKAKTEMAFKLAKGGEDVAAYLAS 113 (116)
T ss_dssp CCHHHHHHHHHCH----HHHHHHHHTCTTCCCSCCCCCSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHCH----HHHhcccccCCCCCCCCCCCCCCCHHHHHHHHHH
Confidence 4667777777653 3488776655444 5566899999999963
No 7
>d1dmfa_ g.46.1.1 (A:) Metallothionein {Crab (Callinectes sapidus), alpha and beta domains [TaxId: 6763]}
Probab=12.39 E-value=26 Score=23.33 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=9.7
Q ss_pred CCCCCCcceEeccc
Q psy11137 797 EPQCPFRCICFRTT 810 (831)
Q Consensus 797 ~~~CP~~C~C~~tt 810 (831)
++-|-++|+|.+..
T Consensus 2 gpccndkcvcqegg 15 (28)
T d1dmfa_ 2 GPCCNDKCVCQEGG 15 (28)
T ss_dssp CCSTTSCCCTTTTC
T ss_pred CCCcCCceEEccCC
Confidence 45677888887654
No 8
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=11.37 E-value=62 Score=24.31 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=27.6
Q ss_pred cCCCChHHHHHHHHHCCCC-----CCCCCcccchhhhhc
Q psy11137 526 NIGLNHTAYVRKAAASNIP-----VVPRPYRKDILAYLN 559 (831)
Q Consensus 526 n~dlsh~dYv~~a~a~~Ip-----~VS~~DRKdLl~yL~ 559 (831)
-.+.+.-.-++|..+.||+ .|+-.|++-||+|||
T Consensus 11 ~v~~~vd~Ll~Ql~~AGl~ks~~D~vt~~eK~~LL~~Ln 49 (49)
T d1nd9a_ 11 ERQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLN 49 (49)
T ss_dssp HHSSSHHHHHHHHHHHTSCCSSSSCEETTGGGHHHHHHC
T ss_pred HHCcCHHHHHHHHHHcCCCCCCCCccCHHHHHHHHHhhC
Confidence 3456666778888888884 788899999999996
No 9
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=10.40 E-value=1.4e+02 Score=24.60 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=30.2
Q ss_pred cceeehhhHHHHHhccCCchhHHHHHHHhcCC-----CcccCCchhhHHHHhcC
Q psy11137 155 KKYYTLECLLFFLKNIGLNHTAYVRKAAASNI-----PVVPRPYRKDILAYLNG 203 (831)
Q Consensus 155 ~eyYtLesllf~lkn~~l~H~~Yvr~A~a~~i-----p~V~rpDRkdllayL~G 203 (831)
+.-|+-|.|--||+|- ..||+..-.... +...--||.||+|||+-
T Consensus 67 g~~w~~~~L~~~l~~P----~~~i~~~~~~~~~~t~M~~~~~~d~~dliAYLks 116 (121)
T d1cota_ 67 DLTWTEADLIEYVTDP----KPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLAQ 116 (121)
T ss_dssp TCBCCHHHHHHHHHCH----HHHHHHHHTCTTCCCSCCCCCCSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCc----HHHhccccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3457788888888872 447765444333 33455699999999973
No 10
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.50 E-value=96 Score=22.93 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=27.2
Q ss_pred cCCCChHHHHHHHHHCCCCCCCCCcccchh
Q psy11137 526 NIGLNHTAYVRKAAASNIPVVPRPYRKDIL 555 (831)
Q Consensus 526 n~dlsh~dYv~~a~a~~Ip~VS~~DRKdLl 555 (831)
.+..+.++-+.-|.+.||.+++.+-+.||+
T Consensus 6 Lk~k~~~EL~~iA~~lgIen~~~lrKQeLi 35 (47)
T d1a62a1 6 LKNTPVSELITLGENMGLENLARMRKQDII 35 (47)
T ss_dssp HHTSCHHHHHHHHHTTTCCCCTTSCHHHHH
T ss_pred HhcCCHHHHHHHHHHcCCCCcccccHHHHH
Confidence 356788999999999999999999999997
Done!