RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11137
(831 letters)
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding,
protein interaction surface, transcription elongation
factor; 1.55A {Saccharomyces cerevisiae}
Length = 170
Score = 120 bits (302), Expect = 1e-31
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 17/135 (12%)
Query: 7 GAPSPSHQKRISRTPIIIIPAANTSLITM-----------FVTTEAKRAAGSKRENEILI 55
G + + PII+IP+A +S++T+ +V S + I
Sbjct: 1 GIDPFTSSGGPRKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLP---SVPNGLVNI 57
Query: 56 QRS-KGDGTTVPYRVIDNPLKLARTD-WDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNL 113
+++ + + + ++DN + + WDRVVA+F G WQF + W+ +P E+F +
Sbjct: 58 EKNFERISRPIRFIIVDNTRMFTKPEYWDRVVAIFTTGHTWQFNNYQWN-SPQELFQRCK 116
Query: 114 AVSRNFIQTTSCNQI 128
+F + +
Sbjct: 117 GYYFHFAGDSVPQHV 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.9 bits (155), Expect = 2e-10
Identities = 108/649 (16%), Positives = 186/649 (28%), Gaps = 221/649 (34%)
Query: 107 EIFSKNL-AVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSR--EGAVKKYYT-LEC 162
E F+K L + F E + P ++ +L Y SS V ++ L
Sbjct: 35 EQFNKILPEPTEGFAADD--------EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 163 LL--F---FL--KNIGLNHTAYVRKAAASNIPVVPRPYRKD---ILAYLNGEVATSASID 212
L F +L +I H AA + K I Y+ + D
Sbjct: 87 CLTEFENCYLEGNDI---HAL-----AAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 213 KTAP---LE-IPTQVKRV-------GT-----EEL----ETPAKKPRLEDSVHL--QHVK 250
K + + ++ G EEL +T + D + + +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY--HVLVGDLIKFSAETLS 196
Query: 251 QQLAARLDAPKEASVTLDNIKF--GPGS-------LTEAMSVEKIAAIKAKRLAKKRTTI 301
+ + LDA K + L+ +++ P + L+ +S I I+ LA T
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ---LAHYVVTA 253
Query: 302 KRVATDTDGTDIGDKDAEKDNLKDMLAFDVDVTKNI-----ISRERQWRTRTSIFHTSGK 356
K + G G L+ L ++ + I+ W + F S
Sbjct: 254 KLL-----GFTPG-------ELRSYLKGATGHSQGLVTAVAIAETDSWES----FFVS-- 295
Query: 357 IFSKNIFAILQSIKAREEGRHRPAPPTPLVP-----STPVNKSVPQPIV----YNRYDQE 407
+ +L I R + P T L P S N+ VP P++ + +
Sbjct: 296 --VRKAITVLFFIGVR---CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 408 RFIKSREET--EGFKIDTMGTYHGMTLKSVTEGNTPRKPALT-PSTPAHQTPSA--TPNA 462
++ G ++ ++L N + ++ P P + N
Sbjct: 351 DYVNKTNSHLPAGKQV-------EISLV-----NGAKNLVVSGP-------PQSLYGLNL 391
Query: 463 NAAASPAPYNINKKEIIERENQIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLF 522
+ AP +++ I E ++ F S+R
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKF-----------------SNR--------------- 419
Query: 523 FLKNIGLNHTAYVRKAAASNIPV-VP--RPYRKDILAYLNGEVATSASIDKTAPLEIPTQ 579
FL PV P +N ++ + ++IP
Sbjct: 420 FL-------------------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-- 458
Query: 580 VKRVGTEELETPAKKPR-LEDSVHLQHVKQQLAARLDAPK--EASVT--LDNIKFGPG-- 632
V R L S+ + V + + + T LD FGPG
Sbjct: 459 VYDTFD------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD---FGPGGA 509
Query: 633 ----SLT----EAMSVEKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDK 673
LT + V I A T+ D D G K
Sbjct: 510 SGLGVLTHRNKDGTGVRVIVA----------GTLDINPDD----DYGFK 544
Score = 50.4 bits (120), Expect = 3e-06
Identities = 98/632 (15%), Positives = 175/632 (27%), Gaps = 251/632 (39%)
Query: 191 RPYRKDILAYLNGEVATSASIDKTAPLEIPT-------QVKRVGTEELETPAKKPRLED- 242
RP L++ G + L +PT Q++ + L P + +D
Sbjct: 7 RPL---TLSH--GSLEHV--------LLVPTASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 243 ---SVHL-----QHVKQQLAARLDAPKEASVTLDNIKFGPGSLTEAMS-----------V 283
L +V + L P + + LTE +
Sbjct: 54 PTTPAELVGKFLGYV-----SSLVEPSKVGQFDQVLNL---CLTEFENCYLEGNDIHALA 105
Query: 284 EKIAAIKAKRLAKKRTTIK-----RVATDTDGTDIGD----KDAEKDNLKDMLAF----D 330
K+ L K + IK R+ + + + N + + F +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 331 VDV---------------TKNIISRERQW-RTRTSIFHTSGKIFSKNIFAILQSIKAREE 374
D ++I + + K+F++ IL+ ++
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWLENPS- 223
Query: 375 GRHRPAPPTPLVPSTPVNKSVP-----QPIVYNRYDQERFIKSREETEGFKIDTMGTYHG 429
P + S P+ S P Q Y K +G G
Sbjct: 224 ----NTPDKDYLLSIPI--SCPLIGVIQLAHY-----VVTAK-----------LLGFTPG 261
Query: 430 MTLKSVTEGNTPRKPALTPSTPAHQTPSATPNANAAASPAPYNINKKEIIERENQIIFGE 489
L+S +G T L +A A A
Sbjct: 262 -ELRSYLKGATGHSQGL---------VTAV--AIAETD---------------------- 287
Query: 490 FSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLN-HTAYVRKAAASNIPVVPR 548
SW S +V+K T+ LFF IG+ + AY + +I
Sbjct: 288 -SWE------------SFFVSVRKAITV---LFF---IGVRCYEAYPNTSLPPSI----- 323
Query: 549 PYRKDILAYLNGEVATSASIDKTAPLEIPT---QVKRVGTEELETPAKKPRLEDSVHLQH 605
+D L N E +P+ + + E+++ +
Sbjct: 324 --LEDSLE--NNE-------------GVPSPMLSISNLTQEQVQD--------------Y 352
Query: 606 VKQQLAARLDAPKEASVTLDNIKFGP------G---SLTE-AMSVEKIAAI------KAK 649
V + + L A K+ ++L N G G SL +++ K A +
Sbjct: 353 VNK-TNSHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 650 RLAKKRTTIKR---VA----TD--TDGTDIGDKDAEKDNL-----------------KDM 683
+K R VA + +D+ +KD K+N+ D+
Sbjct: 409 FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 684 LAFDVDVTKNI---ISRER-QWR--TRTSIFH 709
+++ I I R +W T+ H
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 45.8 bits (108), Expect = 7e-05
Identities = 69/393 (17%), Positives = 100/393 (25%), Gaps = 151/393 (38%)
Query: 5 PSGAPSPSHQKR--ISRTPIIIIPAANTSLITMFVTTEAKRAAGSKRENEILIQRSKGDG 62
PS P + IS P+I + L VT + G L KG
Sbjct: 222 PSNTPDKDYLLSIPIS-CPLIGV----IQLAHYVVTA---KLLGFTPGE--LRSYLKG-- 269
Query: 63 TTVPYRVIDNPLKLARTDWDRVVAVFV-MGPAWQ-FKGWPWDANPVEIFSKNLAVSRNFI 120
T + + V AV + +W+ F K + V F
Sbjct: 270 ATGHSQGL-------------VTAVAIAETDSWESF---------FVSVRKAITVL--FF 305
Query: 121 QTTSCNQIIFGEFS-WPKDVNTNYLHYQSSREG---------AVKKYYTLECLLFFLK-- 168
C + S P + + S E ++ T E + ++
Sbjct: 306 IGVRC-YEAYPNTSLPPSIL-------EDSLENNEGVPSPMLSISNL-TQEQVQDYVNKT 356
Query: 169 N----------IGL-N-HTAYV---------------RKAAA------SNI--------- 186
N I L N V RKA A S I
Sbjct: 357 NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416
Query: 187 -----PV-VP--RPYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELETPAKKP 238
PV P +N ++ + ++IP V
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFD------GSDL 468
Query: 239 R-LEDSVHLQHVKQQLAARLDAPK--EASVT--LDNIKFGPG------SLT----EAMSV 283
R L S+ + V + + + T LD FGPG LT + V
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILD---FGPGGASGLGVLTHRNKDGTGV 525
Query: 284 EKIAAIKAKRLAKKRTTIKRVATDTDGTDIGDK 316
I A T+ D D G K
Sbjct: 526 RVIVA----------GTLDINPDD----DYGFK 544
Score = 43.1 bits (101), Expect = 5e-04
Identities = 50/305 (16%), Positives = 89/305 (29%), Gaps = 115/305 (37%)
Query: 400 VYNRYDQERFIKSREETEGFKIDTM-------------GT--------YHGMTLKSVTEG 438
V+NR D ++T GF I + G Y M +++ +G
Sbjct: 1645 VWNRAD-----NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 439 NTPRKP----------ALTPSTPA---HQTPSATPNANAAASPAPYNINKKEIIERENQI 485
+ + T + T P A A + K + + +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 486 IF-----GEFSWPKDVNTNYLHYQS---SREGAVKKYYTLECLLFFLKNIGLNHTAYVR- 536
F GE++ L + S E V+ ++F+ R
Sbjct: 1759 -FAGHSLGEYA--------ALASLADVMSIESLVE-------VVFY------------RG 1790
Query: 537 KAAASNIPVVPR------PYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTEELE- 589
VPR Y ++A G VA AS + A + +V + +E
Sbjct: 1791 MTMQV---AVPRDELGRSNYG--MIAINPGRVA--ASFSQEALQYVVERVGKRTGWLVEI 1843
Query: 590 ----TPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLD-----NIKFGPGSLTEAMSV 640
+ Q+V A L A + L+ I L +++S+
Sbjct: 1844 VNYNVENQ----------QYV---AAGDLRALDTVTNVLNFIKLQKIDIIE--LQKSLSL 1888
Query: 641 EKIAA 645
E++
Sbjct: 1889 EEVEG 1893
Score = 42.0 bits (98), Expect = 0.001
Identities = 75/438 (17%), Positives = 132/438 (30%), Gaps = 164/438 (37%)
Query: 26 PAANTSLITMFVTTEAKRAAG---SKRENEILIQRSK-----------GDGTTVPY---- 67
LI ++ A+ A K+ N L + G G T Y
Sbjct: 116 LVKTKELIKNYI--TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 68 ---------------RVIDNPLK-LARTDWDRVVAVFVMGPAWQFKGW---PWDANPVEI 108
+ L L RT D VF G W P P +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLD-AEKVFTQG--LNILEWLENP-SNTPDKD 229
Query: 109 FSKNLAVSRNFIQTTS-CNQIIFGE---FSWPKDVNTNY----LHYQ-----------SS 149
+ ++ +S I + ++ + F+ P ++ + H Q S
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDS 288
Query: 150 RE---GAVKKYYTLECLLFFLKNIGLN-HTAYVRKAAASNIPVVPRPYRKDILAYLNGEV 205
E +V+K T+ LFF IG+ + AY + +I +D L N E
Sbjct: 289 WESFFVSVRKAITV---LFF---IGVRCYEAYPNTSLPPSI-------LEDSLE--NNE- 332
Query: 206 ATSASIDKTAPLEIPT---QVKRVGTEELETPAKKPRLEDSVHLQHVKQQLAARLDAPKE 262
+P+ + + E+++ +V + + L A K+
Sbjct: 333 ------------GVPSPMLSISNLTQEQVQD--------------YVNK-TNSHLPAGKQ 365
Query: 263 ASVTLDNIKFGP------G---SLTE-AMSVEKIAAI------KAKRLAKKRTTIKR--- 303
++L N G G SL +++ K A + +K R
Sbjct: 366 VEISLVN---GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 304 VA----TD--TDGTDIGDKDAEKDNL-----------------KDMLAFDVDVTKNI--- 337
VA + +D+ +KD K+N+ D+ +++ I
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 338 ISRER-QWR--TRTSIFH 352
I R +W T+ H
Sbjct: 483 IIRLPVKWETTTQFKATH 500
Score = 34.6 bits (79), Expect = 0.16
Identities = 55/309 (17%), Positives = 94/309 (30%), Gaps = 118/309 (38%)
Query: 22 IIIIPAAN-TSLITMFVTTEAKRAAGSKREN-EILIQRSKGDGTTVPYRV---IDNPL-- 74
I+ I N +L F + KR REN +I + DG ++ I+
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRI----RENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 75 --------KLARTDWDRV--VAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTS 124
L+ T + A+ +M A F+ K S+ I +
Sbjct: 1717 YTFRSEKGLLSAT---QFTQPALTLMEKA-AFEDL-----------K----SKGLIPADA 1757
Query: 125 CNQIIF-----GEFSWPKDVNTNYLHYQS---SREGAVKKYYTLECLLFFLKNIGLNHTA 176
F GE++ L + S E V+ ++F+
Sbjct: 1758 T----FAGHSLGEYA--------ALASLADVMSIESLVE-------VVFY---------- 1788
Query: 177 YVR-KAAASNIPVVPR------PYRKDILAYLNGEVATSASIDKTAPLEIPTQVKRVGTE 229
R VPR Y ++A G VA AS + A + +V +
Sbjct: 1789 --RGMTMQV---AVPRDELGRSNYG--MIAINPGRVA--ASFSQEALQYVVERVGKRTGW 1839
Query: 230 ELE-----TPAKKPRLEDSVHLQHVKQQLAARLDAPKEASVTLD-----NIKFGPGSLTE 279
+E + Q+V A L A + L+ I L +
Sbjct: 1840 LVEIVNYNVENQ----------QYV---AAGDLRALDTVTNVLNFIKLQKIDIIE--LQK 1884
Query: 280 AMSVEKIAA 288
++S+E++
Sbjct: 1885 SLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 5e-09
Identities = 75/565 (13%), Positives = 166/565 (29%), Gaps = 123/565 (21%)
Query: 38 TTEAKRAAGSKRE-NEILIQRSKGDGTTVPYRVIDNPLKLARTDWDRVVAVFVMGPAWQF 96
+ ++ SK E + I++ + GT R+ + + +V FV +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGT---LRLFW----TLLSKQEEMVQKFV-EEVLR- 88
Query: 97 KGWPWDANPVEIFSKNLAVSRNFIQTTSCNQIIFGEFSWPKDVNTNYLHYQSSREGAVKK 156
+ + +P++ ++ S ++ + N + Y SR +
Sbjct: 89 INYKFLMSPIK--TEQRQPSMMTRMYIEQRDRLYND-------NQVFAKYNVSRL---QP 136
Query: 157 YYTLECLLFFLK---NIGLNH-------TAYVRKAAASNIPVVPRPYR------------ 194
Y L L L+ N+ + T S ++
Sbjct: 137 YLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 195 KDILAYLNG-----EVATSASIDKTAPLEIPTQVKRVGTEELETPAKKPR----LEDSVH 245
+ +L L + ++ D ++ +++ + L L + +
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 246 LQHVK--------------QQLAARLDAPKEASVTLDNIKFGPGSLTEAMSVE---KIAA 288
+ +Q+ L A ++LD+ LT K
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLD 312
Query: 289 IKAKRL---AKKRT--TIKRVATDT-DGTDIGD--KDAEKDNLKDMLAFDVDVTKNIISR 340
+ + L + +A DG D K D L ++ ++V + R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 341 ERQWRTRTSIFHTSGKIFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSV----P 396
+ R S+F S I + + +++ + + +V + S+ P
Sbjct: 373 KMFDRL--SVFPPSAHIPTI-LLSLIWFDVIKSD--------VMVVVNKLHKYSLVEKQP 421
Query: 397 QPIVYNRYDQERFIKSREETEGFKIDTMGTYHGMTLKSVTEGNTPRKPALTPSTPAHQTP 456
+ + +K K++ H + N P+ +
Sbjct: 422 KESTISIPSIYLELKV-------KLENEYALHRSIVDHY---NIPKT---------FDSD 462
Query: 457 SATPNA--NAAASPAPYNINKKEIIEREN--QIIFGEFSWPKDVNTNYLHYQSSREGAVK 512
P S +++ E ER +++F +F + + H ++ +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF---LEQKIRHDSTAWNASGS 519
Query: 513 KYYTLECLLFFLKNIGLNHTAYVRK 537
TL+ L F+ I N Y R
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERL 544
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 43.1 bits (102), Expect = 1e-04
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
CP C C V C + L +P + T +
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEI 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 41.6 bits (98), Expect = 4e-04
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
CP +C C TTV C Q L +P + T L
Sbjct: 5 CPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAEL 37
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 42.1 bits (99), Expect = 5e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 788 VISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
+ S +SV + CP C+C + C Q L VP+ + + T +L
Sbjct: 3 LASGRSVVS---CPANCLCASNILSCSKQQLPNVPQSLPSYTALL 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 41.9 bits (99), Expect = 5e-04
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 798 PQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
P CPFRC C V+C LE VP+ + DT +L
Sbjct: 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 40.8 bits (96), Expect = 0.001
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 795 STEPQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
+ CPF C C V+C L+ VP+ +S DTT+L
Sbjct: 22 TYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLL 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 39.7 bits (93), Expect = 0.003
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 788 VISTQSVSTEPQCPFRCICFR--TTVRCMFQHLEYVPR-VSNDTTIL 831
I+ + + CP C C + V C + L VP+ + ++T L
Sbjct: 34 AIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYL 80
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 39.6 bits (93), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
CP RC C T +RC + L VP + + T L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL 33
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 39.7 bits (93), Expect = 0.004
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 786 MFVISTQSVSTEPQCPFRCICFR--TTVRCMFQHLEYVPR-VSNDTTIL 831
+ + + CP C C + V C+ ++L VP +S +T +L
Sbjct: 21 LLMGCVAETGSAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLL 69
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 38.2 bits (89), Expect = 0.012
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVPRVSNDTTIL 831
C C+ + L VP + +
Sbjct: 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYV 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 37.0 bits (86), Expect = 0.016
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 797 EPQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
P C + V C ++L +P + DTTIL
Sbjct: 1 HPICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL 36
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 36.1 bits (84), Expect = 0.021
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 798 PQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
+CP C C T VRC + L+ +P+ + D T L
Sbjct: 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTEL 36
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 34.8 bits (80), Expect = 0.031
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 800 CPFRCICFRTTVRCMFQHLEY--VPR-VSNDTTIL 831
CP C C T V C + L + +P DTT L
Sbjct: 2 CPAPCSCAGTLVDCGRRGLTWASLPTAFPVDTTEL 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 34.7 bits (80), Expect = 0.14
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 800 CPFRCICF--RTTVRCMFQHLEYVPR-VSNDTTIL 831
CP RC C V C + VP + +T +L
Sbjct: 3 CPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLL 37
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 33.4 bits (77), Expect = 0.15
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 799 QCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
CP C C TTV C + L+ +PR + TT L
Sbjct: 1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTEL 34
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 34.0 bits (78), Expect = 0.18
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 800 CPFR-CICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
C R C C C + +P + + L
Sbjct: 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIEL 35
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 33.4 bits (77), Expect = 0.20
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 800 CPFRCICF-RTTVRCMFQHLEYVPRVSNDTTIL 831
C C R + ++ +P + T L
Sbjct: 4 SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTL 36
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 31.9 bits (73), Expect = 0.93
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 798 PQCPFRCICF--RTTVRCMFQHLEYVPR-VSNDTTIL 831
P CI T +CM Q L VP + + T +
Sbjct: 1 PGSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNI 37
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 31.6 bits (71), Expect = 1.0
Identities = 5/25 (20%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 800 CPFRCICF-RTTVRCMFQHLEYVPR 823
CP C + +RC
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLH 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 30.7 bits (70), Expect = 1.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVP-RVSNDTTIL 831
CP +C C TTV C + L VP + T +L
Sbjct: 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVL 35
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVP-RVSNDTTIL 831
CP +C C +T V C L VP + D L
Sbjct: 6 CPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRL 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVP-RVSNDTTIL 831
CP RC C TTV C Q VP + TT L
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYL 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 31.5 bits (72), Expect = 1.2
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 798 PQCPFRCICFRT--TVRCMFQHLEYVPR-VSNDTTIL 831
+CI T C L +P + N T L
Sbjct: 2 TSSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECL 38
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 30.3 bits (69), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVP-RVSNDTTIL 831
CP RC C T +RC + L VP + + T L
Sbjct: 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRL 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 30.4 bits (69), Expect = 2.0
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVP-RVSNDTTIL 831
CP +C C TTV C + VP + + IL
Sbjct: 13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQIL 45
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein,
flavoprotein, FAD, mitochondrion, plastid, chromophore,
chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana}
PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Length = 525
Score = 30.7 bits (70), Expect = 2.5
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 68 RVIDNP-LKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFI 120
RV+DN L A + D ++ V+ + P + F K A+ F+
Sbjct: 51 RVLDNDALYKAWSSSDTILPVYCLDPRL------FHTTHFFNFPKTGALRGGFL 98
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 29.9 bits (68), Expect = 3.5
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 184 SNIPVVPRPYRKDILAYLNGEVATSASIDKTA----PLEIPTQVKRVGTEELETPAKKPR 239
+ I + P R+++ + P + ++ A +
Sbjct: 5 TKITLSDLPLREELRGEHAYGAPQLNVDIRLNTNENPYPPSEALVADLVATVDKIATELN 64
Query: 240 L---EDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGS 276
D+V L + +LAA + +VT DN+ GS
Sbjct: 65 RYPERDAVEL---RDELAAYITKQTGVAVTRDNLWAANGS 101
Score = 29.9 bits (68), Expect = 3.5
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 541 SNIPVVPRPYRKDILAYLNGEVATSASIDKTA----PLEIPTQVKRVGTEELETPAKKPR 596
+ I + P R+++ + P + ++ A +
Sbjct: 5 TKITLSDLPLREELRGEHAYGAPQLNVDIRLNTNENPYPPSEALVADLVATVDKIATELN 64
Query: 597 L---EDSVHLQHVKQQLAARLDAPKEASVTLDNIKFGPGS 633
D+V L + +LAA + +VT DN+ GS
Sbjct: 65 RYPERDAVEL---RDELAAYITKQTGVAVTRDNLWAANGS 101
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A
{Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Length = 489
Score = 29.5 bits (67), Expect = 5.7
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 68 RVIDNP-LKLARTDWDRVVAVFVMGPAWQFKGWPWDANPV 106
R+ D+ L A + AV+ P QF
Sbjct: 17 RLHDHEPLHRALKSGLAITAVYCYDPR-QFAQTHQGFAKT 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 28.4 bits (64), Expect = 9.8
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 801 PFRCICFRTTVRCMFQHLEYVP-RVSNDTTIL 831
P + T +CM + +P + T L
Sbjct: 2 PCVEVVPNITYQCMELNFYKIPDNLPFSTKNL 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,292,319
Number of extensions: 748974
Number of successful extensions: 1601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1596
Number of HSP's successfully gapped: 45
Length of query: 831
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 729
Effective length of database: 3,853,851
Effective search space: 2809457379
Effective search space used: 2809457379
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.5 bits)