RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11137
(831 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 43.9 bits (102), Expect = 5e-05
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 798 PQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
P CPFRC C V+C LE VP+ + DT +L
Sbjct: 2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALL 36
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 42.1 bits (97), Expect = 8e-05
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 800 CPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
CP C C TTV C + L+ +PR + TT L
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTEL 34
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 39.8 bits (91), Expect = 8e-04
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 800 CPFRCICF---RTTVRCMFQHLEYVPR-VSNDTTIL 831
CP C+C+ + T C Q L+ VP + + +
Sbjct: 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRI 37
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 36.4 bits (82), Expect = 0.010
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 800 CPFR-CICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
C R C C C + +P + + L
Sbjct: 1 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIEL 34
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 30.1 bits (66), Expect = 0.55
Identities = 5/25 (20%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 800 CPFRCICF-RTTVRCMFQHLEYVPR 823
CP C + +RC
Sbjct: 1 CPDACCPHGSSGLRCTRDGALDSLH 25
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 185
Score = 28.8 bits (63), Expect = 1.9
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 1/129 (0%)
Query: 68 RVIDNPLKLARTDWDRVVAVFVMGPAWQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCNQ 127
RV DNP A V+A+FV P + + +LA + +++
Sbjct: 11 RVEDNPALAAAVRAGPVIALFVWAP-EEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCL 69
Query: 128 IIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNIP 187
I + +S+ Y L + L ++ +++
Sbjct: 70 ITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLL 129
Query: 188 VVPRPYRKD 196
P +
Sbjct: 130 YEPWEVTDE 138
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 28.5 bits (62), Expect = 3.0
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 798 PQCPFRCICFRTTVRCMFQHLEYVPR-VSNDTTIL 831
P C + V C ++L +P + DTTIL
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL 36
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 28.0 bits (61), Expect = 3.6
Identities = 17/181 (9%), Positives = 44/181 (24%), Gaps = 7/181 (3%)
Query: 658 IKRVATDTDGTDIGDKDAEKDNLKDMLAFDVDV-TKNIISRERQWRTRTSIFH---TSGK 713
I+ A D DG + + + ++ +G
Sbjct: 3 IRLAAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGP 62
Query: 714 IFSKNIFAILQSIKAREEGRHRPAPPTPLVPSTPVNKSVPQPIVYNRYDQERFIKSREET 773
+F +N + + + ++ L + R F E+
Sbjct: 63 VFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDV 122
Query: 774 EGFKIDTMGKGHMFVISTQSVSTEPQCPFRCICFRTTVRCMFQHLEYVPRVS---NDTTI 830
+ + + +G + S S + + + + + ND +
Sbjct: 123 DYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPM 182
Query: 831 L 831
Sbjct: 183 F 183
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans
[TaxId: 266]}
Length = 121
Score = 27.1 bits (59), Expect = 4.1
Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 12/88 (13%)
Query: 480 ERENQIIFGEFSWPKDVNTNYLHYQS---SREGAVKKYYTLECLLFFLKNIGLNHTAYVR 536
+ ++G + + + E +T L+ ++ + ++
Sbjct: 32 GKTGPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEADLIEYVTD----PKPWLV 87
Query: 537 KAAASNIPVVPRPY-----RKDILAYLN 559
K + + D++A+L
Sbjct: 88 KMTDDKGAKTKMTFKMGKNQADVVAFLA 115
Score = 27.1 bits (59), Expect = 4.7
Identities = 8/85 (9%), Positives = 25/85 (29%), Gaps = 12/85 (14%)
Query: 126 NQIIFGEFSWPKDVNTNYLHYQS---SREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAA 182
++G + + + E +T L+ ++ + ++ K
Sbjct: 35 GPNLYGVVGRKIASEEGFKYGEGILEVAEKNPDLTWTEADLIEYVTD----PKPWLVKMT 90
Query: 183 ASNIPVVPRPY-----RKDILAYLN 202
+ + D++A+L
Sbjct: 91 DDKGAKTKMTFKMGKNQADVVAFLA 115
>d1eg1a_ b.29.1.10 (A:) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei,
Endoglucanase I [TaxId: 51453]}
Length = 371
Score = 27.5 bits (61), Expect = 8.0
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 263 ASVTLDNIKFGP-GSLT 278
V NI++G GS T
Sbjct: 355 THVVFSNIRWGDIGSTT 371
Score = 27.5 bits (61), Expect = 8.0
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 620 ASVTLDNIKFGP-GSLT 635
V NI++G GS T
Sbjct: 355 THVVFSNIRWGDIGSTT 371
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 26.4 bits (57), Expect = 9.9
Identities = 18/156 (11%), Positives = 36/156 (23%), Gaps = 1/156 (0%)
Query: 68 RVIDNPLKLARTDWDRVVAVFVMGPA-WQFKGWPWDANPVEIFSKNLAVSRNFIQTTSCN 126
R+ D+P L VV + V+ P + + + A
Sbjct: 12 RLHDHPALLEALARGPVVGLVVLDPNNLKTTPRRRAWFLENVRALREAYRARGGALWVLE 71
Query: 127 QIIFGEFSWPKDVNTNYLHYQSSREGAVKKYYTLECLLFFLKNIGLNHTAYVRKAAASNI 186
+ + + Y + +Y + L ++
Sbjct: 72 GLPWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALPVPLHLLPAPHLLPPDLPRA 131
Query: 187 PVVPRPYRKDILAYLNGEVATSASIDKTAPLEIPTQ 222
V P+ + A EIP +
Sbjct: 132 YRVYTPFSRLYRGAAPPLPPPEALPKGPEEGEIPRE 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.267 0.0445 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,969,567
Number of extensions: 141686
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 13
Length of query: 831
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 738
Effective length of database: 1,130,706
Effective search space: 834461028
Effective search space used: 834461028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.4 bits)