BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11139
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 272 bits (695), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 130/264 (49%), Positives = 178/264 (67%), Gaps = 24/264 (9%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
DGYRLT G DYLAL T ++RK + S G++IGVGKES+I +V D G VLK+HRLGR
Sbjct: 73 DGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRI 132
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMEL 120
FR +K RDY +R+ W+YLSR++A KEFA+M ALY+ GFPVP+P+ +RH ++M L
Sbjct: 133 SFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSL 192
Query: 121 VKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDE---------- 170
V P+ +VS V + +LY +L+ LI+R A HG+IHGDFNEFN++++E++
Sbjct: 193 VDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITL 252
Query: 171 RPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSN-------DLREDI----- 218
P++IDFPQMVS HPNA+ +FDRDV CIK FF +RF + S D ++ +
Sbjct: 253 TPIIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAKKTVGKDGA 312
Query: 219 --LDVEVSASGFTKRMDKELLAQL 240
LD + ASGFTK+M K+L A +
Sbjct: 313 KRLDAALEASGFTKKMAKDLEAAI 336
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 177/264 (67%), Gaps = 24/264 (9%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
DGYRLT G DYLAL T ++RK + S G++IGVGKES+I +V D G VLK+HRLGR
Sbjct: 73 DGYRLTYGGLDYLALHTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRI 132
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMEL 120
FR +K RDY +R+ W+YLSR++A KEFA+M ALY+ GFPVP+P+ +RH ++M L
Sbjct: 133 SFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSL 192
Query: 121 VKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDE---------- 170
V P+ +VS V + +LY +L+ LI+R A HG+IHGDFNEFN++++E++
Sbjct: 193 VDALPMRQVSSVPDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITL 252
Query: 171 RPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSN-------DLREDI----- 218
P++I FPQMVS HPNA+ +FDRDV CIK FF +RF + S D ++ +
Sbjct: 253 TPIIIXFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAKKTVGKDGA 312
Query: 219 --LDVEVSASGFTKRMDKELLAQL 240
LD + ASGFTK+M K+L A +
Sbjct: 313 KRLDAALEASGFTKKMAKDLEAAI 336
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
+G T G +L L + + G +G GKES ++ V+K H++G T
Sbjct: 68 EGSTFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHT 127
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRI---SATKEFAYMNALYDRGFPVPKPVDINRHCVI 117
F+ +KEKRDY G L+ S + SA EF + L +G VPK + V+
Sbjct: 128 SFKKVKEKRDY-------GDLHFSVLAIRSARNEFRALQKL--QGLAVPKVYAWEGNAVL 178
Query: 118 MELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
MEL+ L RV V N + + D +++ + +F + G++HGD +++N+++ E E +IDF
Sbjct: 179 MELIDAKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSE-EGIWIIDF 236
Query: 178 PQMVSTSHPNAQTFFDRDVTCIKDFFRKRF 207
PQ V + +RDV I +F + +
Sbjct: 237 PQSVEVGEEGWREILERDVRNIITYFSRTY 266
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 14/210 (6%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
+G T G +L L + + G G GKES ++ V+K H++G T
Sbjct: 68 EGSTFTFIGLSLYSLHRLVRSGKVDAIGKLXGEGKESAVFNCYSEKFGECVVKFHKVGHT 127
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRI---SATKEFAYMNALYDRGFPVPKPVDINRHCVI 117
F+ +KEKRDY G L+ S + SA EF + L +G VPK + V+
Sbjct: 128 SFKKVKEKRDY-------GDLHFSVLAIRSARNEFRALQKL--QGLAVPKVYAWEGNAVL 178
Query: 118 MELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
EL+ L RV V N + + D +++ + +F + G++HGD +++N+++ E E +IDF
Sbjct: 179 XELIDAKELYRV-RVENPDEVLDXILEEVAKFYHRGIVHGDLSQYNVLVSE-EGIWIIDF 236
Query: 178 PQMVSTSHPNAQTFFDRDVTCIKDFFRKRF 207
PQ V + +RDV I +F + +
Sbjct: 237 PQSVEVGEEGWREILERDVRNIITYFSRTY 266
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 15 LKTLSSRKVIASFGNQIGVGKESNIYVVEDC-DGNPLVL--KLHRLGRTCFRNLKEKRDY 71
L LS++ I + G I GKE+N++ + DG P+ + K++R+ + F + E
Sbjct: 39 LYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDE---- 94
Query: 72 HAHRNKAGWLY------LSRIS--------ATKEFAYMNALYDRGFPVPKPVDINRHCVI 117
+LY + RIS KEF + + G VP+P ++ ++
Sbjct: 95 --------YLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLL 146
Query: 118 MELVKGDPLSRVSHVN--------NVEALYDELMDLIVRFANHG-VIHGDFNEFNLMLQE 168
ME + D L + V +VE +++++++ + R ++H D +E+N+M +
Sbjct: 147 MEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID 206
Query: 169 DERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRK 205
+ ID Q V+ HP A+++ +RDV I FF K
Sbjct: 207 --KVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSK 241
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 101/211 (47%), Gaps = 28/211 (13%)
Query: 15 LKTLSSRKVIASFGNQIGVGKESNIYVVEDC-DGNPLV--LKLHRLGRTCFRNLKEKRDY 71
L LS++ I + G I GKE+N++ + DG P+ +K++R+ + F +K D
Sbjct: 39 LYKLSAKGYITAXGGVISTGKEANVFYADGVFDGKPVAXAVKIYRIETSEF----DKXDE 94
Query: 72 HAHRNKAGWLYLSRIS--------ATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKG 123
+ + ++ RIS KEF + + G VP+P ++ ++ E +
Sbjct: 95 YLYGDER--FDXRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYXKNVLLXEFIGE 152
Query: 124 DPLSRVSHVN--------NVEALYDELMDLIVRFANHG-VIHGDFNEFNLMLQEDERPVV 174
D L + V +VE +++++++ + R ++H D +E+N+ + +
Sbjct: 153 DELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIXYID--KVYF 210
Query: 175 IDFPQMVSTSHPNAQTFFDRDVTCIKDFFRK 205
ID Q V+ HP A+++ +RDV I FF K
Sbjct: 211 IDXGQAVTLRHPXAESYLERDVRNIIRFFSK 241
>pdb|3V4D|A Chain A, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|C Chain C, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|F Chain F, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|B Chain B, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|D Chain D, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|E Chain E, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
Length = 134
Score = 29.6 bits (65), Expect = 3.9, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 86 ISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGDPLSRVSHVNNV 135
I+ K +A +N +Y FP KP R C+ LVK D L ++ + ++
Sbjct: 86 ITDWKNYAAINEIYAEFFPGDKPA---RFCIQCGLVKPDALVEIATIAHI 132
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A
Mechanism For Histone Binding And Shuttling
Length = 417
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 119 ELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFP 178
E VKG P ++ + N+ + D + D + + L D RP
Sbjct: 180 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEY------LQDIGLEYLTDGRPGFKLLF 233
Query: 179 QMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVS 224
+ S+++P FF D+ C F++K GY+ + + + E+S
Sbjct: 234 RFDSSANP----FFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 275
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365)
pdb|2Z2R|B Chain B, Nucleosome Assembly Proteins I (Nap-1, 74-365)
Length = 292
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 119 ELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFP 178
E VKG P ++ + N+ + D + D + + L D RP
Sbjct: 107 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEY------LQDIGLEYLTDGRPGFKLLF 160
Query: 179 QMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVS 224
+ S+++P FF D+ C F++K GY+ + + + E+S
Sbjct: 161 RFDSSANP----FFTNDILCKTYFYQKELGYSGDFIYDHAEGCEIS 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,039,587
Number of Sequences: 62578
Number of extensions: 536925
Number of successful extensions: 1393
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 27
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)