BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11139
(460 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CQS5|RIOK2_MOUSE Serine/threonine-protein kinase RIO2 OS=Mus musculus GN=Riok2 PE=1
SV=1
Length = 547
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/485 (46%), Positives = 306/485 (63%), Gaps = 37/485 (7%)
Query: 2 GYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTC 61
GYRLTN GYDYLALKTLSSR+V+ S GNQ+GVGKES+IY+V + G L LKLHRLGRT
Sbjct: 72 GYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEAGQQLALKLHRLGRTS 131
Query: 62 FRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV 121
FRNLK KRDYH HR+ WLYLSR+SA KEFAYM ALY+R FPVPKP+D NRH VIMEL+
Sbjct: 132 FRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVIMELI 191
Query: 122 KGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMV 181
G PL ++ HV + ++YDE M+LIV+ NHG+IHGDFNEFNLML +D+ +IDFPQMV
Sbjct: 192 NGYPLCQIHHVEDPASVYDEAMELIVKLGNHGLIHGDFNEFNLMLDKDDHITMIDFPQMV 251
Query: 182 STSHPNAQTFFDRDVTCIKDFFRKRFGY------TSNDLR-EDILDVEVSASGFTKRM-- 232
STSHPNA+ +FDRDV CI++FF KRF Y T +D+R ED LDVEVSASG+TK M
Sbjct: 252 STSHPNAEWYFDRDVKCIREFFMKRFSYESELYPTFSDIRKEDSLDVEVSASGYTKEMQA 311
Query: 233 DKELLAQLGLDESDEELDSEDD-TVEDKDEIEN---LREQVDVTMNLYNE--GERKDSTS 286
D ELL +G D+ E + + D T D++ +E R +++ + +E G S++
Sbjct: 312 DDELLHPVGPDDKITETEEDSDFTFSDEEMLEKAKVWRSELEKEADPADESGGSWCCSST 371
Query: 287 ES--IK----PEVTSHSGSEEISSEDSRTNNSDVKSNPKESTRSEDTVLKFVKNVELQKN 340
+S IK PE ++H S E+++ + + P S V +F + +N
Sbjct: 372 DSKQIKDGGLPEESAHVSSFEVTALSQAVEEMERQVLPHRS------VTEFSEESRRTEN 425
Query: 341 EGKVNEILDKNCVNCAVEKINPDELQNGDKN-DIILDENRLGSNTKT-SRDPSEEDFNFD 398
+G+ + +C E + L + ++ DE + S T+ +R S
Sbjct: 426 DGQPGQRSPAGSEDCDDEPPHLIALSSVNREFRPFRDEESMSSVTRHRTRTLSVTSAG-- 483
Query: 399 IRSVTSASTIPPEVIRARVKKALEKRERTKVRIRNLAKGEASATSRKRRENRATIK---E 455
S S STIPPE+++ +VK+ L ++++ R R L KGEA+ +++RREN IK E
Sbjct: 484 --SALSCSTIPPELVKQKVKRQLTRQQKAAAR-RRLQKGEANVFTKQRRENMQNIKSSLE 540
Query: 456 SAGYY 460
+A ++
Sbjct: 541 AASFW 545
>sp|Q9BVS4|RIOK2_HUMAN Serine/threonine-protein kinase RIO2 OS=Homo sapiens GN=RIOK2 PE=1
SV=2
Length = 552
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 230/501 (45%), Positives = 301/501 (60%), Gaps = 64/501 (12%)
Query: 2 GYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTC 61
GYRLTN GYDYLALKTLSSR+V+ S GNQ+GVGKES+IY+V + +G LKLHRLGRT
Sbjct: 72 GYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFALKLHRLGRTS 131
Query: 62 FRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV 121
FRNLK KRDYH HR+ WLYLSR+SA KEFAYM ALY+R FPVPKP+D NRH V+MEL+
Sbjct: 132 FRNLKNKRDYHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELI 191
Query: 122 KGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMV 181
G PL ++ HV + ++YDE M+LIV+ ANHG+IHGDFNEFNL+L E + +IDFPQMV
Sbjct: 192 NGYPLCQIHHVEDPASVYDEAMELIVKLANHGLIHGDFNEFNLILDESDHITMIDFPQMV 251
Query: 182 STSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDL-------REDILDVEVSASGFTKRM-- 232
STSHPNA+ +FDRDV CIKDFF KRF Y S RED LDVEVSASG+TK M
Sbjct: 252 STSHPNAEWYFDRDVKCIKDFFMKRFSYESELFPTFKDIRREDTLDVEVSASGYTKEMQA 311
Query: 233 DKELLAQLGLDESD------EELDSEDDTVEDKDEI---ENLREQVDVTMNLYNEGE--- 280
D ELL LG D+ + E D V +K E+ EN E+ N E E
Sbjct: 312 DDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGSENESER-----NCLEESEGCY 366
Query: 281 -RKDSTSESIKPEVTSHSGSEEISSEDSRTN------------NSDVKSNPKESTRSEDT 327
R E IK + S ++ S E + N N+ V +E R+E+
Sbjct: 367 CRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEKNRTEN- 425
Query: 328 VLKFVKNVELQKNEGKVNEILDKNCVNC----AVEKINPDELQNGDKNDI-ILDENRLGS 382
+ Q+ +G V D+ C A+ +N + D+ ++ +++ R +
Sbjct: 426 ----YNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTRT 481
Query: 383 NTKTSRDPSEEDFNFDIRSVTSASTIPPEVIRARVKKALEKRERTKVRIRNLAKGEASAT 442
+ TS S S STIPPE+++ +VK+ L K++++ VR R L KGEA+
Sbjct: 482 LSITSSG-----------SAVSCSTIPPELVKQKVKRQLTKQQKSAVR-RRLQKGEANIF 529
Query: 443 SRKRRENRATIK---ESAGYY 460
+++RREN IK E+A ++
Sbjct: 530 TKQRRENMQNIKSSLEAASFW 550
>sp|Q54T05|RIO2_DICDI Serine/threonine-protein kinase rio2 OS=Dictyostelium discoideum
GN=rio2 PE=3 SV=1
Length = 522
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 184/256 (71%), Gaps = 8/256 (3%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
DGY+LT GYD+LALKTL SR V + GNQIGVGKES+IY+V + D +VLKLHRLGR
Sbjct: 69 DGYKLTYLGYDFLALKTLVSRGVCSYVGNQIGVGKESDIYIVANDDNQEMVLKLHRLGRV 128
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMEL 120
F+ +K RDY HR A WLYLSR++A KEFAYM ALY+ GFPVP P+D NRHC++M
Sbjct: 129 SFKTIKNNRDYLKHRKSASWLYLSRLAALKEFAYMKALYENGFPVPTPIDYNRHCIVMSR 188
Query: 121 VKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQM 180
+G PL+++ + + +Y +LM+LIV+ A++G+IHGDFNEFN+++ ++E +IDFPQM
Sbjct: 189 ARGYPLTQIVQLRHPSKVYSDLMNLIVKLASYGLIHGDFNEFNILINDEEEITLIDFPQM 248
Query: 181 VSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLRE-------DILDVEVSASGFTKRMD 233
VSTSH NA+ +FDRDVTCI+ FF KRF + + LDVE+SASGFT+ M+
Sbjct: 249 VSTSHLNAEMYFDRDVTCIRVFFEKRFNFIGERWPKFKDCQNIHSLDVEISASGFTRDME 308
Query: 234 KELLAQLGLDESDEEL 249
KE L + D+E+
Sbjct: 309 KE-FQDLSKQQDDDEI 323
>sp|Q9P7W5|RIO2_SCHPO Serine/threonine-protein kinase rio2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio2 PE=3 SV=2
Length = 344
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/245 (55%), Positives = 174/245 (71%), Gaps = 9/245 (3%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
+GYRLT GYDYLALK LS R + S GNQIGVGKES++YVV D G +LK+HRLGR
Sbjct: 71 EGYRLTYAGYDYLALKALSKRASVYSVGNQIGVGKESDVYVVGDQKGKQYILKIHRLGRI 130
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMEL 120
FR++K RDY +R W YLSR++ATKEFA+M L++ GFPVP P+D +RHC+IME+
Sbjct: 131 SFRSVKNNRDYLRNRKTGSWQYLSRLAATKEFAFMKILHEHGFPVPAPIDHSRHCIIMEM 190
Query: 121 VKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQM 180
+ PL V+ + + ALY LMD+IVRFA +G+IHGDFNEFN++++ED VVIDFPQM
Sbjct: 191 IDAFPLRAVTDIRDPPALYQTLMDIIVRFARNGLIHGDFNEFNIIVREDGTAVVIDFPQM 250
Query: 181 VSTSHPNAQTFFDRDVTCIKDFFRKRFGY---------TSNDLREDILDVEVSASGFTKR 231
VSTSHP+AQ +FDRDV CI +F K + Y S +E+ LD+ + ASGF K+
Sbjct: 251 VSTSHPDAQFYFDRDVQCIVQYFEKNYQYKGDVPNFEDISKMEKENNLDIMIEASGFNKK 310
Query: 232 MDKEL 236
KEL
Sbjct: 311 QSKEL 315
>sp|P40160|RIO2_YEAST Serine/threonine-protein kinase RIO2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO2 PE=1 SV=1
Length = 425
Score = 240 bits (612), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 183/301 (60%), Gaps = 41/301 (13%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
DGYRLT G DYLALKT+ +R + S GN IGVGKES+IY V D +GNP V+K+HRLGRT
Sbjct: 71 DGYRLTYNGIDYLALKTMLNRDTVYSVGNTIGVGKESDIYKVSDKNGNPRVMKIHRLGRT 130
Query: 61 CFRNLKEKRDYHAHRNK-AGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIME 119
F +++ RDY N+ A W++LSR++A KE+ +M+ LY +GF VP+P D +RH V+ME
Sbjct: 131 SFHSVRNNRDYLKKSNQGANWMHLSRLAANKEYQFMSMLYSKGFKVPEPFDNSRHIVVME 190
Query: 120 LVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQ---EDERP---V 173
L++G P+ R+ N+ LY +LM IV AN G+IH DFNEFN+M++ EDE V
Sbjct: 191 LIEGYPMRRLRKHKNIPKLYSDLMCFIVDLANSGLIHCDFNEFNIMIKDKLEDENDCGFV 250
Query: 174 VIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKR----------------FG----YTSND 213
VIDFPQ +S H +A +F RDV CI+ FF+K+ FG Y D
Sbjct: 251 VIDFPQCISIQHQDADYYFQRDVDCIRRFFKKKLKYEPKPDSSMLDTEGFGDGYKYAYPD 310
Query: 214 LREDI-----LDVEVSASGFTKRMDKELLAQLGLDESDEEL-----DSEDDTVEDKDEIE 263
+ D+ LD V ASGF+K+ GL+ + E + +S+DD D+ E E
Sbjct: 311 FKRDVKRTDNLDELVQASGFSKKHP----GDRGLETAVESMRNAVYNSDDDMSNDEAEEE 366
Query: 264 N 264
N
Sbjct: 367 N 367
>sp|Q58473|RIO2_METJA RIO-type serine/threonine-protein kinase Rio2 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio2 PE=3 SV=1
Length = 270
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/212 (37%), Positives = 126/212 (59%), Gaps = 12/212 (5%)
Query: 2 GYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTC 61
GY ++ GYD LA+ + ++ + GN++GVGKE ++Y V DG VLK H+ GRTC
Sbjct: 42 GYAVSMGGYDALAINAFVKKGILKAIGNKLGVGKEGDVYTVLLSDGREAVLKFHKHGRTC 101
Query: 62 FRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFP---VPKPVDINRHCVIM 118
F K R Y A ++ WLY+SR++A +EF +N L FP VP+P++ NRH +IM
Sbjct: 102 FTRGKRYRGYLADKHHISWLYVSRLTAEREFEILNEL----FPIVKVPEPIEWNRHAIIM 157
Query: 119 ELVKGDPLSRV-----SHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPV 173
V G+ L R+ ++ L+ ++++ + + G IHGD +EFN++L E+ V
Sbjct: 158 GKVVGEELKRLDLSEFMSKEEIKDLFWKIIEEVKKAYEIGYIHGDLSEFNILLDENGDFV 217
Query: 174 VIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRK 205
+ID+PQ V HP+A+ + RD+ + +F+K
Sbjct: 218 IIDWPQAVPKYHPDAEFYLKRDIWNVIRYFKK 249
>sp|O30245|RIO2_ARCFU RIO-type serine/threonine-protein kinase Rio2 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rio2 PE=1 SV=1
Length = 282
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
+G T G +L L + + G +G GKES ++ V+K H++G T
Sbjct: 68 EGSTFTFIGLSLYSLHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHT 127
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRI---SATKEFAYMNALYDRGFPVPKPVDINRHCVI 117
F+ +KEKRDY G L+ S + SA EF + L +G VPK + V+
Sbjct: 128 SFKKVKEKRDY-------GDLHFSVLAIRSARNEFRALQKL--QGLAVPKVYAWEGNAVL 178
Query: 118 MELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
MEL+ L RV V N + + D +++ + +F + G++HGD +++N+++ E E +IDF
Sbjct: 179 MELIDAKELYRV-RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSE-EGIWIIDF 236
Query: 178 PQMVSTSHPNAQTFFDRDVTCIKDFFRKRF 207
PQ V + +RDV I +F + +
Sbjct: 237 PQSVEVGEEGWREILERDVRNIITYFSRTY 266
>sp|P34649|YOT3_CAEEL Putative RIO-type serine/threonine-protein kinase 3
OS=Caenorhabditis elegans GN=riok-3 PE=3 SV=1
Length = 510
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 16/205 (7%)
Query: 13 LALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEK-RDY 71
L L ++ V S I GKES + +K+++ + F+N E +D
Sbjct: 235 LLLLKWINQGVFDSVDGIIATGKESAVLHAAQDSATSYAIKVYKTTLSEFKNRSEYVKDD 294
Query: 72 HAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGDPLSRVSH 131
+N G L +I A +EF ++ + G P P+PV + R+ ++M + GD
Sbjct: 295 FRFKNPRGVL---KIWAEREFMNLSRMAKHGLPCPQPVKVRRNVLVMSFL-GDQGLAAPR 350
Query: 132 VNNVEA----------LYDELMDLIVRFANHGV-IHGDFNEFNLMLQEDERPVVIDFPQM 180
+ NVE +YD++ ++ R + +H D +EFNL+L D + VID Q
Sbjct: 351 LKNVEWEFFTDDERRNVYDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVSQA 410
Query: 181 VSTSHPNAQTFFDRDVTCIKDFFRK 205
+ SHP + F RD+ I FF +
Sbjct: 411 MDLSHPRSLQFLTRDIQNIITFFTR 435
>sp|Q922Q2|RIOK1_MOUSE Serine/threonine-protein kinase RIO1 OS=Mus musculus GN=Riok1 PE=2
SV=2
Length = 567
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 24/277 (8%)
Query: 24 IASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLY- 82
I+ I GKE+N+Y G +K+++ F++ ++K R + G+
Sbjct: 178 ISEIHGCISTGKEANVYYASTPSGESRAIKIYKTSILMFKD-RDKYVTGEFRFRRGYCKG 236
Query: 83 ----LSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGD----PLSRVSHVNN 134
+ R A KE + L P P+P+ + H ++M + D PL + ++
Sbjct: 237 NPRKMVRTWAEKEMRNLCRLKTANIPCPEPIRLRSHVLLMGFIGKDDMPAPLLKNVQLSE 296
Query: 135 VEA--LYDELMDLIVR-FANHGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTF 191
+A LY +++ + + + + ++H D +EFN ML +ID Q V HP+A F
Sbjct: 297 SKARELYLQVIQYMRKMYQDARLVHADLSEFN-MLYHGGDVYIIDVSQSVEHDHPHALEF 355
Query: 192 FDRDVTCIKDFFRKR--FGYTSNDLREDILDVEVSASGFTKRMDK--ELLAQ------LG 241
+D T + DFF K T +L + + D ++A ++K E+ +Q
Sbjct: 356 LRKDCTNVNDFFSKHAVAVMTVRELFDFVTDPSITADNMDAYLEKAMEIASQRTKEEKTS 415
Query: 242 LDESDEELDSEDDTVEDKDEIENLREQVDVTMNLYNE 278
D DEE+ + +E++N VD+ M L E
Sbjct: 416 QDHVDEEVFKQAYIPRTLNEVKNYERDVDIMMRLKEE 452
>sp|Q9BRS2|RIOK1_HUMAN Serine/threonine-protein kinase RIO1 OS=Homo sapiens GN=RIOK1 PE=1
SV=2
Length = 568
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 126/290 (43%), Gaps = 28/290 (9%)
Query: 13 LALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYH 72
+ L + +R +I I GKE+N+Y +G +K+++ F++ ++K
Sbjct: 168 MILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAIKIYKTSILVFKD-RDKYVSG 226
Query: 73 AHRNKAGWLY-----LSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGD--- 124
R + G+ + + A KE + L P P+P+ + H ++M + D
Sbjct: 227 EFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMP 286
Query: 125 -PLSRVSHVNNVEA--LYDELMDLIVR-FANHGVIHGDFNEFNLMLQEDERPVVIDFPQM 180
PL + ++ +A LY +++ + R + + ++H D +EFN ML +ID Q
Sbjct: 287 APLLKNVQLSESKARELYLQVIQYMRRMYQDARLVHADLSEFN-MLYHGGGVYIIDVSQS 345
Query: 181 VSTSHPNAQTFFDRDVTCIKDFFRKR--FGYTSNDLREDILDVEVSASGFTKRMDKELLA 238
V HP+A F +D + DFF + T +L E + D ++ + K +
Sbjct: 346 VEHDHPHALEFLRKDCANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAM-- 403
Query: 239 QLGLDESDEELDSEDDTVEDK----------DEIENLREQVDVTMNLYNE 278
++ + EE S+D E+ +E++N +D+ M L E
Sbjct: 404 EIASQRTKEERSSQDHVDEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEE 453
>sp|O28471|RIO1_ARCFU RIO-type serine/threonine-protein kinase Rio1 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rio1 PE=1 SV=1
Length = 258
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 15 LKTLSSRKVIASFGNQIGVGKESNIYVVEDC-DGNPLVL--KLHRLGRTCFRNLKEKRDY 71
L LS++ I + G I GKE+N++ + DG P+ + K++R+ + F + E
Sbjct: 39 LYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDE---- 94
Query: 72 HAHRNKAGWLY------LSRIS--------ATKEFAYMNALYDRGFPVPKPVDINRHCVI 117
+LY + RIS KEF + + G VP+P ++ ++
Sbjct: 95 --------YLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLL 146
Query: 118 MELVKGDPLSRVSHVN--------NVEALYDELMDLIVRFANHG-VIHGDFNEFNLMLQE 168
ME + D L + V +VE +++++++ + R ++H D +E+N+M +
Sbjct: 147 MEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID 206
Query: 169 DERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRK 205
+ ID Q V+ HP A+++ +RDV I FF K
Sbjct: 207 --KVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSK 241
>sp|O42650|RIO1_SCHPO Serine/threonine-protein kinase rio1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rio1 PE=3 SV=2
Length = 497
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 13 LALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNL-----KE 67
+ L L + I+ I GKE+N+Y + DG +K+++ F++ E
Sbjct: 108 MILLKLINNGTISEINGCISTGKEANVYHATNEDGKHFAIKIYKTSILVFKDRDRYVSGE 167
Query: 68 KRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV---KGD 124
R H + NK + R+ A KE + + G P P+P+ + +H ++M + KG
Sbjct: 168 FRFRHGY-NKRNPRKMVRLWAEKEIRNLKRVAAAGIPCPEPILLKQHVLLMSFLGDKKGW 226
Query: 125 PLSRVSHVNNVEALYDELMDLIVR-----FANHGVIHGDFNEFNLMLQEDERPVVIDFPQ 179
++ ++ +L L+ R F ++H D +E+NL+ + + ID Q
Sbjct: 227 AYPKLKDIDMTPGEATKLYQLVARNMRILFHVCHLVHADLSEYNLLYHKG-KVYFIDVSQ 285
Query: 180 MVSTSHPNAQTFFDRDVTCIKDFFRK 205
V HP + F D+ I FFR+
Sbjct: 286 SVEHDHPQSIDFLRMDILNISTFFRR 311
>sp|Q03021|RIO1_THEAC RIO-type serine/threonine-protein kinase Rio1 OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=rio1 PE=3 SV=1
Length = 186
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 86 ISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV--KGDPLSRVSHVNNVEALYDELM 143
+ KE+ + AL + P PKP+ ++ ++M + K P ++ V E +YD+++
Sbjct: 50 VWVRKEYTNLMALENAHVPAPKPIGFFKNILVMSYIGTKSGPAPQLKDVEIDEGIYDQVI 109
Query: 144 DLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFF 203
D + R + ++H D +E+N++ + ID Q V HP A F +RD+ + +FF
Sbjct: 110 DGMRRMYANRIVHADLSEYNMLFHR--KVYFIDLAQAVDMDHPMAAEFLERDIVNVSNFF 167
Query: 204 RK 205
+K
Sbjct: 168 QK 169
>sp|Q54VD8|RIO1_DICDI Serine/threonine-protein kinase rio1 OS=Dictyostelium discoideum
GN=rio1 PE=3 SV=1
Length = 574
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 110/241 (45%), Gaps = 22/241 (9%)
Query: 13 LALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRN-------- 64
L L + ++ + I GKE+N+Y + +K+++ F++
Sbjct: 171 LMLFKMINKGAFSEINGCISTGKEANVYHAFTPNEEERAVKVYKTSILVFKDRDRYVTGE 230
Query: 65 LKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGD 124
+ +R Y H + + ++ A KEF + L + G P P P+ + H ++M + D
Sbjct: 231 FRFRRGYSKHNPRK----MVKVWAEKEFRNLTRLKNAGIPCPTPLILRNHILVMTFIGKD 286
Query: 125 ----PLSRVSHVNNVE--ALYDELMDLI-VRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
P + + V+ + +Y + + ++ F ++H D +E+N++ +++ +ID
Sbjct: 287 GYAAPRLKDATVSQEKFGVIYLDCIKMMRTLFHKCRLVHADLSEYNMLYYKNQL-YIIDV 345
Query: 178 PQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTS--NDLREDILDVEVSASGFTKRMDKE 235
Q V HP++ F D + + DFFRK+ T +L E I D+ ++ + ++K
Sbjct: 346 SQSVEHDHPHSLDFLRMDCSNVTDFFRKKEVNTMFIQELFEFITDLTITEDNIDQYLEKM 405
Query: 236 L 236
L
Sbjct: 406 L 406
>sp|Q8SVI7|RIO1_ENCCU Probable serine/threonine-protein kinase RIO1 homolog
OS=Encephalitozoon cuniculi (strain GB-M1) GN=RIO1 PE=3
SV=1
Length = 409
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 43/242 (17%)
Query: 14 ALKTLSSRKVIASFGNQIGVGKESNIYVVED----C----------------DGN--PLV 51
L+ L +R + + + GKESN+Y+ E C +G P+V
Sbjct: 52 VLERLQARGKLVNLQGSLCTGKESNVYLGEASTSLCSKFIKNRYSVTEEPGREGQIVPVV 111
Query: 52 LKLHRLGRTCFRNLKEKRDYHAHRNKAGWLY-------LSRISATKEFAYMNALYDRGFP 104
+K+ + FR+ R+ + K + L ++ A KE + L + G P
Sbjct: 112 VKIFKTSIMSFRD----RERYIRSEKRFQRFCTSNSRKLIKVWAEKEVRNLKRLNNAGIP 167
Query: 105 VPKPVDINRHCVIMELV----KGDPLSRVSHVNNVEALYDELMDLIV-RFANHGVIHGDF 159
P+P+ + + ++M + + P R + + ++E Y + + +I + G++H D
Sbjct: 168 SPEPIYLKNNILVMTQIGRCSEVAPRLRDASIKDLEGCYQQCVKIIRDMYKKAGLVHADL 227
Query: 160 NEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYT---SNDLRE 216
+EFNL+ E VID Q V H NAQ F D+ I FF ++ G + NDL E
Sbjct: 228 SEFNLLYFEGV-VYVIDVGQSVEIDHDNAQRFLIMDINNINSFFSRK-GVSVAKGNDLFE 285
Query: 217 DI 218
+I
Sbjct: 286 EI 287
>sp|Q12196|RIO1_YEAST Serine/threonine-protein kinase RIO1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIO1 PE=1 SV=1
Length = 484
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 46/231 (19%)
Query: 15 LKTLSSRKVIASFGNQIGVGKESNIY----------VVEDCDGNPLVL-----------K 53
LK++ +R VIA + GKE+N+Y V+++ G VL K
Sbjct: 66 LKSMVTRGVIADLNGCLSTGKEANVYHAFAGTGKAPVIDEETGQYEVLETDGSRAEYAIK 125
Query: 54 LHRLGRTCFRNLKEKRD----YHAHRNKAGWLYLSRISATKEFAYMNALYDRG-FPVPKP 108
+++ F++ + D + R++ + +I A KEF + +Y G P PKP
Sbjct: 126 IYKTSILVFKDRERYVDGEFRFRNSRSQHNPRKMIKIWAEKEFRNLKRIYQSGVIPAPKP 185
Query: 109 VDINRHCVIME-LVKGDPLS-------------RVSHVNNVEALYDELMDLIVRFANHGV 154
+++ + ++ME L +G+ + + H + Y L+ + R +
Sbjct: 186 IEVKNNVLVMEFLSRGNGFASPKLKDYPYKNRDEIFHYYHTMVAYMRLLYQVCR-----L 240
Query: 155 IHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRK 205
+H D +E+N ++ D++ +ID Q V HP + F D+ + +F K
Sbjct: 241 VHADLSEYNTIVH-DDKLYMIDVSQSVEPEHPMSLDFLRMDIKNVNLYFEK 290
>sp|Q1RMT7|RIOK3_BOVIN Serine/threonine-protein kinase RIO3 OS=Bos taurus GN=RIOK3 PE=2
SV=1
Length = 519
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 22/252 (8%)
Query: 3 YRLTNQGYDYLALKTLSSRK---VIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGR 59
Y++ N G +S+ K V ++G + GKE + + +C +K+ +
Sbjct: 242 YKMVNSGMLETITGCISTGKESVVFHAYGGSMEDGKEDSKVIPTEC-----AIKVFKTTL 296
Query: 60 TCFRN----LKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHC 115
F+N +K+ + +K + R+ A KE + + G P P V + +H
Sbjct: 297 NEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQRAGIPCPTVVLLKKHI 356
Query: 116 VIMELVKGD--PLSRVSHVN-----NVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQE 168
++M + D P ++ V +A Y L + + ++H D +E+N ML
Sbjct: 357 LVMSFIGHDQVPAPKLKEVKLSSEEMKDAYYQTLHLMQQLYDECTLVHADLSEYN-MLWH 415
Query: 169 DERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASGF 228
+ +ID Q V +HP+ F RD + FF+K G L E L VS
Sbjct: 416 AGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK--GGVKEALGERELFNAVSGLNI 473
Query: 229 TKRMDKELLAQL 240
+ + + LA++
Sbjct: 474 SADNEADFLAEI 485
>sp|O14730|RIOK3_HUMAN Serine/threonine-protein kinase RIO3 OS=Homo sapiens GN=RIOK3 PE=1
SV=2
Length = 519
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 104/252 (41%), Gaps = 22/252 (8%)
Query: 3 YRLTNQGYDYLALKTLSSRK---VIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGR 59
Y++ N G +S+ K V ++G + KE + + +C +K+ +
Sbjct: 242 YKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTEC-----AIKVFKTTL 296
Query: 60 TCFRN----LKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHC 115
F+N +K+ + +K + R+ A KE + + G P P V + +H
Sbjct: 297 NEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHI 356
Query: 116 VIMELVKGD--PLSRVSHVN-----NVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQE 168
++M + D P ++ V EA Y L + + ++H D +E+N ML
Sbjct: 357 LVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYN-MLWH 415
Query: 169 DERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASGF 228
+ +ID Q V +HP+ F RD + FF+K G L E L VS
Sbjct: 416 AGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK--GGVKEALSERELFNAVSGLNI 473
Query: 229 TKRMDKELLAQL 240
T + + LA++
Sbjct: 474 TADNEADFLAEI 485
>sp|Q9DBU3|RIOK3_MOUSE Serine/threonine-protein kinase RIO3 OS=Mus musculus GN=Riok3 PE=2
SV=3
Length = 519
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 107/252 (42%), Gaps = 22/252 (8%)
Query: 3 YRLTNQGYDYLALKTLSSRK---VIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGR 59
Y++ N G +S+ K V ++G + KE + +C +K+ +
Sbjct: 242 YKMVNSGMLETITGCISTGKESVVFHAYGGSLEDEKEDGKAIPTEC-----AIKVFKTTL 296
Query: 60 TCFRN----LKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHC 115
F+N +K+ + +K + R+ A KE + + G P P V + +H
Sbjct: 297 NEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQKAGIPCPTVVLLKKHI 356
Query: 116 VIMELVKGD--PLSRVSHVN----NVEALYDELMDLIVRFANH-GVIHGDFNEFNLMLQE 168
++M + D P ++ V ++ Y + + L+ + N ++H D +E+N ML
Sbjct: 357 LVMSFIGHDQVPAPKLKEVKLSNEEMKDAYYQTLHLMQQLYNECTLVHADLSEYN-MLWH 415
Query: 169 DERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASGF 228
+ +ID Q V +HP+ F RD + FF+K G + L E L VS
Sbjct: 416 AGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQK--GGVTEALNERELFNAVSGLNI 473
Query: 229 TKRMDKELLAQL 240
+ + + LA++
Sbjct: 474 SADNEADFLAEI 485
>sp|Q9PBJ1|KDKA_XYLFA 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain 9a5c) GN=kdkA PE=3 SV=2
Length = 249
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 34 GKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATKEFA 93
G + + VE GN ++ + R G N R++ W R + EF
Sbjct: 52 GGRGSAWFVEASFGNAVLRQYRRGGMIAMLN----------RDRYFWCGGHRTRSVLEFR 101
Query: 94 YMNALYDRGFPVPKPVDIN--------RHCVIMELVKG-DPLSRVSHVNNVEALYDELMD 144
M L RG PVP P+ R ++ME ++G L+ N+ E ++++
Sbjct: 102 LMRELISRGLPVPTPLAACYVRYGVQYRAAILMERLEGVSSLAMCVRGNSKETHWEQIGR 161
Query: 145 LIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+I RF G+ H D N N++L + + +IDF
Sbjct: 162 MISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 154 VIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFF-RKRFGYTSN 212
++HGD +E+N+++++DE PV IDF Q V T HP A RD I +FF RKR
Sbjct: 210 LVHGDLSEYNILVKDDE-PVFIDFSQSVITQHPLAHPLLIRDCINICNFFRRKRVDCNYK 268
Query: 213 DLREDILDVEVSASGFTKRMDKELLAQL 240
DL + I E+ +D+ ++ QL
Sbjct: 269 DLYKYITGKEIDP------IDEAMIKQL 290
>sp|Q87C81|KDKA_XYLFT 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=kdkA PE=3 SV=2
Length = 249
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 34 GKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATKEFA 93
G + + VE GN ++ + R G N R++ W R + EF
Sbjct: 52 GGRGSAWFVEASFGNAVLRQYRRGGMIAMLN----------RDRYFWCGGHRTRSVLEFR 101
Query: 94 YMNALYDRGFPVPKPVDIN--------RHCVIMELVKG-DPLSRVSHVNNVEALYDELMD 144
M L RG PVP P+ R ++ME ++G L+ N+ E ++++
Sbjct: 102 LMRELISRGLPVPTPLAACYVRHGVQYRAAILMERLEGVSSLAMCVRGNSKEIHWEQIGR 161
Query: 145 LIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+I RF G+ H D N N++L + + +IDF
Sbjct: 162 MISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|B2I5R8|KDKA_XYLF2 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain M23) GN=kdkA PE=3 SV=1
Length = 249
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 34 GKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATKEFA 93
G + + VE GN ++ + R G N R++ W R + EF
Sbjct: 52 GGRGSAWFVEASFGNAVLRQYRRGGMIAMLN----------RDRYFWCGGHRTRSVLEFR 101
Query: 94 YMNALYDRGFPVPKPVDIN--------RHCVIMELVKG-DPLSRVSHVNNVEALYDELMD 144
M L RG PVP P+ R ++ME ++G L+ N+ E ++++
Sbjct: 102 LMRELISRGLPVPTPLAACYVRHGVQYRAAILMERLEGVSSLAMCVRGNSKEIHWEQIGR 161
Query: 145 LIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+I RF G+ H D N N++L + + +IDF
Sbjct: 162 MISRFHREGLDHADLNAHNILLDQAGQCWLIDF 194
>sp|B0U358|KDKA_XYLFM 3-deoxy-D-manno-octulosonic acid kinase OS=Xylella fastidiosa
(strain M12) GN=kdkA PE=3 SV=1
Length = 249
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 34 GKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATKEFA 93
G + + VE GN ++ + R G N R++ W R + EF
Sbjct: 52 GGRGSAWFVEASFGNAVLRQYRRGGMIAMLN----------RDRYFWCGGHRTRSVLEFR 101
Query: 94 YMNALYDRGFPVPKPVDIN--------RHCVIMELVKG-DPLSRVSHVNNVEALYDELMD 144
M L RG PVP P+ R +++E ++G L+ N+ E ++++
Sbjct: 102 LMRELISRGLPVPTPLAACYVRYGVQYRAAILIERLEGVSSLAMCIRGNSKETHWEQIGR 161
Query: 145 LIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+I RF G+ H D N N++L + +IDF
Sbjct: 162 MISRFHREGLDHADLNAHNILLDPAGQCWLIDF 194
>sp|B2FR65|KDKA_STRMK 3-deoxy-D-manno-octulosonic acid kinase OS=Stenotrophomonas
maltophilia (strain K279a) GN=kdkA PE=3 SV=1
Length = 249
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 80 WLYLSRISATKEFAYMNALYDRGFPVPKPVDIN--------RHCVIMELVKG-DPLSRVS 130
W R + EF M AL ++ PVP+P+ R ++ME ++G L+ +
Sbjct: 88 WRGSDRTRSFAEFRLMRALREKKLPVPRPIAAYYMREGLRYRAAILMERIEGVRSLADRA 147
Query: 131 HVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMV 181
V A ++E LI RF G+ H D N N++ + +IDF + V
Sbjct: 148 LVAGRGAPWEETGRLIARFHRAGLDHADLNAHNILFDGNGHGWLIDFDRGV 198
>sp|B4SLP5|KDKA_STRM5 3-deoxy-D-manno-octulosonic acid kinase OS=Stenotrophomonas
maltophilia (strain R551-3) GN=kdkA PE=3 SV=1
Length = 249
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 80 WLYLSRISATKEFAYMNALYDRGFPVPKPVDI--------NRHCVIMELVKG-DPLSRVS 130
W R + EF M AL ++ PVP+P+ R ++ME ++G L+ +
Sbjct: 88 WRGADRTRSFAEFRLMRALREKKLPVPRPLAAFYMREGLRYRAAILMERIEGVRSLADRA 147
Query: 131 HVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMV 181
V A ++E LI RF G+ H D N N++ + +IDF + V
Sbjct: 148 LVAGRGAPWEETGRLIARFHRAGLDHADLNAHNILFDGNGHGWLIDFDRGV 198
>sp|Q65R39|KDKA_MANSM 3-deoxy-D-manno-octulosonic acid kinase OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=kdkA PE=3 SV=2
Length = 240
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 83 LSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGDPLS-RVSHVNNVEAL--- 138
L + EF +N LY G PVPKP+ + + + D LS R+ + ++ AL
Sbjct: 84 LEETRSFAEFNLLNRLYQAGLPVPKPIGAHVEKLAFNHYRADLLSERIENTQDLTALLPN 143
Query: 139 -------YDELMDLIVRFANHGVIHGDFNEFNLMLQE---DERPVVIDF 177
+ ++ LI R + + H D N N+++++ D + +IDF
Sbjct: 144 TELTAEQWQQIGKLIRRLHDLQICHTDLNAHNILIRQQNNDTKFWLIDF 192
>sp|Q54W07|BUD32_DICDI Probable serine/threonine-protein kinase BUD32 homolog
OS=Dictyostelium discoideum GN=bud32 PE=3 SV=1
Length = 252
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 90 KEFAYMNALYDRGFPVPKP--VDINRHCVIMELVKGDPLSR--------VSHVNNVEALY 139
+E +N +G VP VDI + + ME +KG+ + H N +E++
Sbjct: 85 QEVRSLNKCKKKGIQVPSLYLVDIGNNRIYMEFIKGETVKHYLYKNQESTQHQNQIESIM 144
Query: 140 DELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVV-IDF 177
EL + I VIHGD N++L+E +V IDF
Sbjct: 145 KELGNQIGIIHEMNVIHGDLTTSNMLLRESTNELVFIDF 183
>sp|Q8PNH3|KDKA_XANAC 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas axonopodis
pv. citri (strain 306) GN=kdkA PE=3 SV=1
Length = 249
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 75 RNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDI--------NRHCVIMELVKG-DP 125
R++ W R + EF M L R PVP+P+ R ++ME ++
Sbjct: 83 RDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAACYLREGLGYRAALLMERLENVRS 142
Query: 126 LSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMV 181
L+ + V A ++ LI RF G+ H D N N++ +IDF + V
Sbjct: 143 LAEHAQVAGRGAPWEATGQLIARFHRAGLDHADLNAHNILFDAGGHGWLIDFDRGV 198
>sp|Q3BWM9|KDKA_XANC5 3-deoxy-D-manno-octulosonic acid kinase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=kdkA PE=3 SV=1
Length = 249
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 75 RNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGDPLSRVSHVNN 134
R++ W R + EF M L R PVP+P+ C + E V + + N
Sbjct: 83 RDRYLWKGAGRTRSFAEFRLMRELIKRKLPVPRPLAA---CYLREGVGYRAALLMERLEN 139
Query: 135 VEALYDELM------------DLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMV 181
V +L D LI RF G+ H D N N++ +IDF + V
Sbjct: 140 VRSLADHAQVAGRGAPWEATGQLIARFHRAGLDHADLNAHNILFDAGGHGWLIDFDRGV 198
>sp|Q9QYZ6|SMK2A_MOUSE Sperm motility kinase 2A OS=Mus musculus GN=Smok2a PE=2 SV=1
Length = 504
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 116 VIMELVKGDPLSRVSHVNNV--------EALYDELMDLIVRFANHGVIHGDFNEFNLMLQ 167
+IMEL +G L + H+ N AL+ +L+ I N G++H D N+M++
Sbjct: 99 LIMELCEGKSLYQ--HIRNAGYLQEDEARALFKQLLSAINYCRNQGIVHRDLKPDNIMVE 156
Query: 168 EDERPVVIDF 177
+D R +IDF
Sbjct: 157 KDGRVKIIDF 166
>sp|Q8TJS2|KAE1B_METAC Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis
protein OS=Methanosarcina acetivorans (strain ATCC 35395
/ DSM 2834 / JCM 12185 / C2A) GN=MA_3705 PE=3 SV=1
Length = 547
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 102 GFPVPKPVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNE 161
G P P DI + M+ ++G P+ + L +++ +L+ R + G++HGD
Sbjct: 412 GVPTPIIYDIEEFKLKMQFIEGVPIKYLI----TPELSEKVGELVGRLHSSGIVHGDLTT 467
Query: 162 FNLMLQEDERPVVIDF 177
NL+L ER +IDF
Sbjct: 468 SNLLLA-GERLYLIDF 482
>sp|Q8PZ92|KAE1B_METMA Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis
protein OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0602
PE=3 SV=2
Length = 547
Score = 38.5 bits (88), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 102 GFPVPKPVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNE 161
G P P D+ + M+ ++G P+ + L +++ +L+ + + G++HGD
Sbjct: 412 GVPTPIIYDVEEFKLKMQFIEGVPIKYLI----TPPLSEKVGELVGKLHSSGIVHGDLTT 467
Query: 162 FNLMLQEDERPVVIDF 177
NL+L ER +IDF
Sbjct: 468 SNLLLA-GERLYLIDF 482
>sp|Q2NIA4|KAE1B_METST Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis
protein OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=Msp_0013 PE=3 SV=1
Length = 534
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 99 YDRGFPVPKPVDINRHCVIMELVKGDPLSRVSHVN-NVEALYDELMDLIVRFANHGVIHG 157
Y P +D+NR +I+E + L + + + +++ ++ + +++ + +IHG
Sbjct: 395 YGVTTPYIYSIDLNRKDIILEKIDAPKLHEIINTDKDIKKIFTNIGEMVFKMHEGEIIHG 454
Query: 158 DFNEFNLMLQEDERPVVIDF 177
D N++++ D++P+ IDF
Sbjct: 455 DLTTANILIK-DDKPIFIDF 473
>sp|B8CXE9|DTD_HALOH D-tyrosyl-tRNA(Tyr) deacylase OS=Halothermothrix orenii (strain H
168 / OCM 544 / DSM 9562) GN=dtd PE=3 SV=1
Length = 149
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 223 VSASGFTK-RMDKELLAQLGLDESDEELDSEDDTVEDKDEIENLREQVDVT--MNLYNEG 279
V+ +G K ++DK LL +G+ E D +E+D D+I NLR D T MNL
Sbjct: 13 VTVAGDIKGKIDKGLLVFVGIGEGD----TEEDVRYLVDKIVNLRIFEDDTHKMNL---- 64
Query: 280 ERKDSTSESIKPEVTSHSGSEEISSEDSRTNNSDVKSNPKESTRSEDTVLKFVKNVELQK 339
D E + + G R N + P+ + + DT +KF+KN L+
Sbjct: 65 SALDLNREILAVSQFTLYGD----CRKGRRPNFTGAAKPRYAEKMYDTFVKFLKNTGLKV 120
Query: 340 NEGKVNEILDKNCVN 354
EG +++ N +N
Sbjct: 121 EEGVFQAMMEVNLIN 135
>sp|P54735|SPKD_SYNY3 Serine/threonine-protein kinase D OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkD PE=1 SV=1
Length = 505
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 102/229 (44%), Gaps = 15/229 (6%)
Query: 112 NRHCVIMELVKGDPLSRVSHVNNVEA--LYDELMDLIVRFANHGVIHGDFNEFNLMLQE- 168
N ++ E ++G L+ ++ +++ +A + L+ + + G+IH D N++L++
Sbjct: 88 NEFYLVQEYIQGVSLNEIAPISSEQAKTILSSLLTTLKYIHSKGIIHRDIKPENIILRDS 147
Query: 169 DERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASGF 228
D PV+IDF + T A T + F + ++ A G
Sbjct: 148 DHLPVLIDFGAVKETM--GAVTLGSGSTVSSVVIGTRGFMAPEQSSGRSVFSTDLYALGL 205
Query: 229 T--KRMDKELLAQLGLDESDEELDSEDDTVEDKDEIENLREQVDVTMNLYNEGERKDSTS 286
T + K+L + D+ +LD + +I+++ +V + + E R+ S++
Sbjct: 206 TIIYTLTKKLPVEFSSDQQTGQLDWQSHV----SKIDSVLAKV-INKAIEMEPSRRYSSA 260
Query: 287 ESIKPEVTS--HSGSE-EISSEDSRTNNSDVKSNPKESTRSEDTVLKFV 332
E++ + S SG+E + E R S+ + ST++ +TV+K V
Sbjct: 261 EAMYQALHSLISSGAEPALPMETVRVAPSNEFLVTRSSTKTAETVVKPV 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,098,782
Number of Sequences: 539616
Number of extensions: 7705099
Number of successful extensions: 37846
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 815
Number of HSP's that attempted gapping in prelim test: 33540
Number of HSP's gapped (non-prelim): 4843
length of query: 460
length of database: 191,569,459
effective HSP length: 121
effective length of query: 339
effective length of database: 126,275,923
effective search space: 42807537897
effective search space used: 42807537897
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)