RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11139
(460 letters)
>gnl|CDD|240167 cd05144, RIO2_C, RIO kinase family; RIO2, C-terminal catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO2 is present in
archaea and eukaryotes. It contains an N-terminal winged
helix (wHTH) domain and a C-terminal RIO kinase
catalytic domain. The wHTH domain is primarily seen in
DNA-binding proteins, although some wHTH domains may be
involved in RNA recognition. RIO2 is essential for
survival and is necessary for rRNA cleavage during 40S
ribosomal subunit maturation. The biological substrates
of RIO2 are still unknown.
Length = 198
Score = 350 bits (901), Expect = e-121
Identities = 113/198 (57%), Positives = 145/198 (73%)
Query: 9 GYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEK 68
GYDYLAL TL R V+ S GNQIGVGKES++Y+ D DGNP+ LK HRLGRT FR +K K
Sbjct: 1 GYDYLALHTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRK 60
Query: 69 RDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGDPLSR 128
RDY R A WLYLSR++A KEFA + ALY+ GFPVPKP+D NRH V+ME + G L R
Sbjct: 61 RDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFPVPKPIDWNRHAVVMEYIDGVELYR 120
Query: 129 VSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNA 188
V + + E + DE+++ IV+ HG+IHGD +EFN+++ +DE+ +ID+PQMVST HPNA
Sbjct: 121 VRVLEDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTDHPNA 180
Query: 189 QTFFDRDVTCIKDFFRKR 206
+ DRDV I FFR++
Sbjct: 181 EELLDRDVENILRFFRRK 198
>gnl|CDD|223554 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to
N-terminal HTH domain [Signal transduction mechanisms].
Length = 304
Score = 282 bits (723), Expect = 1e-92
Identities = 100/231 (43%), Positives = 146/231 (63%), Gaps = 3/231 (1%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRT 60
+GY+LT GYD LAL L R ++ + G +IGVGKES++YV D G + +K HRLGRT
Sbjct: 69 EGYQLTFSGYDALALHALVKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRT 128
Query: 61 CFRNLKEKRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMEL 120
FR +K RDY A + WLY+SR++A +EF + LY G VPKP+ NRH V+ME
Sbjct: 129 SFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGVKVPKPIAWNRHAVVMEY 188
Query: 121 VKGDPLSRVS-HVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQ 179
++G L R+ V N + + D++++ + + G++HGD +EFN+++ ED VVID+PQ
Sbjct: 189 IEGVELYRLRLDVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDWPQ 248
Query: 180 MVSTSHPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASGFTK 230
V SHP+A+ +RDV I +FR+++GY +E+ LD AS F K
Sbjct: 249 AVPISHPDAEELLERDVENIIKYFRRKYGYKVE--KEEELDRVREASEFGK 297
>gnl|CDD|240158 cd05119, RIO, RIO kinase family, catalytic domain. The RIO kinase
catalytic domain family is part of a larger superfamily,
that includes the catalytic domains of other kinases
such as the typical serine/threonine/tyrosine protein
kinases (PKs), aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase (PI3K).
RIO kinases are atypical protein serine kinases present
in archaea, bacteria and eukaryotes. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. RIO
kinases contain a kinase catalytic signature, but
otherwise show very little sequence similarity to
typical PKs. The RIO catalytic domain is truncated
compared to the catalytic domains of typical PKs, with
deletions of the loops responsible for substrate
binding. Most organisms contain at least two RIO
kinases, RIO1 and RIO2. A third protein, RIO3, is
present in multicellular eukaryotes. In yeast, RIO1 and
RIO2 are essential for survival. They function as
non-ribosomal factors necessary for late 18S rRNA
processing. RIO1 is also required for proper cell cycle
progression and chromosome maintenance. The biological
substrates for RIO kinases are still unknown.
Length = 187
Score = 257 bits (659), Expect = 2e-84
Identities = 79/188 (42%), Positives = 117/188 (62%), Gaps = 9/188 (4%)
Query: 27 FGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKR--DYHAHRNKAGWLYLS 84
G IG GKE+++Y+ D DG P+ +K++R GRT F+ K R DY R K+ W YLS
Sbjct: 1 VGGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLS 60
Query: 85 RISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGD-----PLSRVSHVNNVEALY 139
R+ A KEF + LY+ G PVPKP+D+NRH ++ME + GD L V + + E LY
Sbjct: 61 RLWAEKEFRNLKRLYEAGVPVPKPIDLNRHVLVMEFIGGDGIPAPRLKDVRLLEDPEELY 120
Query: 140 DELMDLIVRFAN-HGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTC 198
D++++L+ + G++HGD +E+N+++ D + +ID PQ V HPNA+ F RDV
Sbjct: 121 DQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEIDHPNAEEFLRRDVEN 179
Query: 199 IKDFFRKR 206
I FFR++
Sbjct: 180 INRFFRRK 187
>gnl|CDD|201633 pfam01163, RIO1, RIO1 family. This is a family of atypical serine
kinases which are found in archaea, bacteria and
eukaryotes. Activity of Rio1 is vital in Saccharomyces
cerevisiae for the processing of ribosomal RNA, as well
as for proper cell cycle progression and chromosome
maintenance. The structure of RIO1 has been determined.
Length = 186
Score = 213 bits (544), Expect = 2e-67
Identities = 69/181 (38%), Positives = 104/181 (57%), Gaps = 9/181 (4%)
Query: 38 NIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHR--NKAGWLYLSRISATKEFAYM 95
N+Y DG + +K++R G T F+ K RD +K W YL R+ A KEF +
Sbjct: 1 NVYHAYSEDGKKVAVKIYRTGTTSFKKRKRYRDGDFRFRDSKTSWRYLVRLWAEKEFRNL 60
Query: 96 NALYDRGFPVPKPVDINRHCVIMELV--KGDPLSRVSHVN---NVEALYDELMD-LIVRF 149
LY+ G PVPKP+ +NRH ++ME + G P R+ V E +YDE++ + +
Sbjct: 61 KRLYEAGVPVPKPIAVNRHVLVMEFIGDDGVPAPRLKDVELEEEAEEIYDEIIREMRRLY 120
Query: 150 ANHGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGY 209
G++HGD +E+N+++ +D+ PV+ID PQ V T HPNA F +RDV I +FFR++
Sbjct: 121 QEAGLVHGDLSEYNVLVDDDK-PVIIDVPQAVETDHPNALEFLERDVENIINFFRRKGVD 179
Query: 210 T 210
Sbjct: 180 V 180
>gnl|CDD|214511 smart00090, RIO, RIO-like kinase.
Length = 237
Score = 187 bits (478), Expect = 7e-57
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 14/233 (6%)
Query: 1 DGYRLTNQGYDYLALKTLSSRKVIASFGNQIGVGKESNIYVVEDCD--GNPLVLKLHRLG 58
Y G LAL +L +R ++++ G I GKE+N+Y D D G +K++R G
Sbjct: 6 ATYEEVLDGRTRLALYSLLNRGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTG 65
Query: 59 RTCFRNLKEKRDYHA--HRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCV 116
F+ D K L R+ A KEF + LY+ G PVPKP+ R+ +
Sbjct: 66 TLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGVPVPKPIAWRRNVL 125
Query: 117 IMELVKGD--PLSRVSHVNNVEA----LYDELMDLIVRFANHG-VIHGDFNEFNLMLQED 169
+ME + GD P R+ V E LYD++++ + + G ++HGD +E+N+++ +
Sbjct: 126 VMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVHDG 185
Query: 170 ERPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRKRFGYT--SNDLREDILD 220
+ V+ID Q V HP A F +RD+ I FFR++ +L E I
Sbjct: 186 K-VVIIDVSQSVELDHPMALEFLERDIRNIIRFFRRKGVDELDEEELFERITG 237
>gnl|CDD|240168 cd05145, RIO1_like, RIO kinase family; RIO1, RIO3 and similar
proteins, catalytic domain. The RIO kinase catalytic
domain family is part of a larger superfamily, that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). RIO
kinases are atypical protein serine kinases containing a
kinase catalytic signature, but otherwise show very
little sequence similarity to typical PKs. Serine
kinases catalyze the transfer of the gamma-phosphoryl
group from ATP to serine residues in protein substrates.
The RIO catalytic domain is truncated compared to the
catalytic domains of typical PKs, with deletions of the
loops responsible for substrate binding. RIO1 is present
in archaea, bacteria and eukaryotes. In addition, RIO3
is present in multicellular eukaryotes. RIO1 is
essential for survival and is required for 18S rRNA
processing, proper cell cycle progression and chromosome
maintenance. The biological substrates for RIO1 are
unknown. The function of RIO3 is also unknown.
Length = 190
Score = 114 bits (289), Expect = 5e-30
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 30/196 (15%)
Query: 31 IGVGKESNIYVVEDCDGNPLVLKLHR-------------LGRTCFRNLKEKRDYHAHRNK 77
I GKE+N+Y DG L +K+++ G FR+ K + K
Sbjct: 5 ISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSN----PRK 60
Query: 78 AGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV--KGDPLSRVSHVN-- 133
L A KEF + LY+ G PVP+P+ + ++ ++ME + G P R+ V
Sbjct: 61 -----LVFAWAEKEFRNLKRLYEAGVPVPEPILLKKNVLVMEFIGDDGSPAPRLKDVPLE 115
Query: 134 --NVEALYDELMDLIVRFANH-GVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQT 190
E LY+++++ + R G++HGD +E+N++ + + P +ID Q V HPNA
Sbjct: 116 EEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYHDGK-PYIIDVSQAVELDHPNALE 174
Query: 191 FFDRDVTCIKDFFRKR 206
F RD+ I FFRK+
Sbjct: 175 FLRRDIRNINRFFRKK 190
>gnl|CDD|224632 COG1718, RIO1, Serine/threonine protein kinase involved in cell
cycle control [Signal transduction mechanisms / Cell
division and chromosome partitioning].
Length = 268
Score = 113 bits (285), Expect = 1e-28
Identities = 65/215 (30%), Positives = 114/215 (53%), Gaps = 13/215 (6%)
Query: 3 YRLTNQGYDYLALKT---LSSRKVIASFGNQIGVGKESNIYVVEDCDGNPLVLKLHRLGR 59
++ ++ +D L+T L SR VI I GKE+N+Y+ E DG + +K++R
Sbjct: 25 RKVVDEVFDKRTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTST 84
Query: 60 TCFRNLKE--KRDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVI 117
+ F+ ++ + D +++ L A KEF + Y+ G VP+P+ + ++
Sbjct: 85 SEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVPEPIAFRNNVLV 144
Query: 118 MELV--KGDPLSRVSHV----NNVEALYDELMDLIVR-FANHGVIHGDFNEFNLMLQEDE 170
ME + G P R+ V E LY+++++ + R + G++HGD +E+N+++ + E
Sbjct: 145 MEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVHDGE 204
Query: 171 RPVVIDFPQMVSTSHPNAQTFFDRDVTCIKDFFRK 205
P +ID Q V+ HPNA F +RDV I FFR+
Sbjct: 205 -PYIIDVSQAVTIDHPNAFEFLERDVRNIARFFRR 238
>gnl|CDD|240170 cd05147, RIO1_euk, RIO kinase family; eukaryotic RIO1, catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO1 is present in
archaea, bacteria and eukaryotes. This subfamily is
composed of RIO1 proteins from eukaryotes. RIO1 is
essential for survival and is required for 18S rRNA
processing, proper cell cycle progression and chromosome
maintenance. The biological substrates for RIO1 are
unknown.
Length = 190
Score = 75.4 bits (186), Expect = 6e-16
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 24/193 (12%)
Query: 31 IGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEK--------RDYHAHRN--KAGW 80
I GKE+N+Y +G +K+++ F++ +++ R + N K
Sbjct: 5 ISTGKEANVYHATTANGEERAIKIYKTSILVFKD-RDRYVSGEFRFRHGYCKSNPRK--- 60
Query: 81 LYLSRISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELV--KGDPLSRVSHVNNVEAL 138
+ R A KE + L G P P+P+ + H ++ME + G R+ E+
Sbjct: 61 --MVRTWAEKEMRNLKRLVTAGIPCPEPILLKSHVLVMEFIGDDGWAAPRLKDAPLSESK 118
Query: 139 YDELMDLIVR-----FANHGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFD 193
EL +++ + + ++H D +E+N +L D + +ID Q V HP+A F
Sbjct: 119 ARELYLQVIQIMRILYQDCRLVHADLSEYN-LLYHDGKLYIIDVSQSVEHDHPHALEFLR 177
Query: 194 RDVTCIKDFFRKR 206
D + DFFRKR
Sbjct: 178 MDCVNVNDFFRKR 190
>gnl|CDD|234975 PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase;
Reviewed.
Length = 239
Score = 72.6 bits (179), Expect = 2e-14
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 10/108 (9%)
Query: 80 WLYLSRISATKEFAYMNALYDRGFPVPKPV--DINRHCV------IMELVKG--DPLSRV 129
+ L R A EF + LY+ G PVP+P+ + RH + ++E ++G D ++ +
Sbjct: 79 FTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALL 138
Query: 130 SHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
E + + LI RF + GV H D N N++L D + +IDF
Sbjct: 139 QEAPLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDF 186
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 59.7 bits (145), Expect = 1e-10
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 89 TKEFAYMNALYDRGFPVPKPVDINRHC----VIMELVKGDPLSRVSHVNNVEALYD--EL 142
+E A + L +G PVPK + ++ME ++G+ L VS + EL
Sbjct: 39 EREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLAEL 98
Query: 143 MDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+ + + + HGD + N+++ + + +ID+
Sbjct: 99 LAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDW 133
>gnl|CDD|240169 cd05146, RIO3_euk, RIO kinase family; eukaryotic RIO3, catalytic
domain. The RIO kinase catalytic domain family is part
of a larger superfamily, that includes the catalytic
domains of other kinases such as the typical
serine/threonine/tyrosine protein kinases (PKs),
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase (PI3K). RIO kinases are
atypical protein serine kinases containing a kinase
catalytic signature, but otherwise show very little
sequence similarity to typical PKs. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. The RIO
catalytic domain is truncated compared to the catalytic
domains of typical PKs, with deletions of the loops
responsible for substrate binding. RIO3 is present only
in multicellular eukaryotes. Its function is still
unknown.
Length = 197
Score = 58.7 bits (142), Expect = 5e-10
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 85 RISATKEFAYMNALYDRGFPVPKPVDINRHCVIMELVKGD--PLSRVSHVNNVEA----L 138
R+ A KE + + G P P+ V + +H ++M + D P ++ +
Sbjct: 70 RMWAEKEMHNLKRMQKAGIPCPEVVVLKKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNA 129
Query: 139 YDELMDLIVRFANHG-VIHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPNAQTFFDRDVT 197
Y +++ ++ + ++H D +E+N ML D + ID Q V +HP+ F RD
Sbjct: 130 YYQVLSMMKQLYKECNLVHADLSEYN-MLWHDGKVWFIDVSQSVEPTHPHGLEFLFRDCR 188
Query: 198 CIKDFFRKR 206
+ FF+K
Sbjct: 189 NVIQFFQKA 197
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 48.8 bits (117), Expect = 1e-06
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 90 KEFAYMNALYDRGFPVPKP--VDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIV 147
E ++ G P VD + ++ME ++G PL V N E L E+ L+
Sbjct: 46 NEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGNDELLR-EIGRLVG 104
Query: 148 RFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+ G++HGD N+++++D + +IDF
Sbjct: 105 KLHKAGIVHGDLTTSNIIVRDD-KLYLIDF 133
>gnl|CDD|220140 pfam09202, Rio2_N, Rio2, N-terminal. Members of this family are
found in Rio2, and are structurally homologous to the
winged helix (wHTH) domain. They adopt a structure
consisting of four alpha helices followed by two beta
strands and a fifth alpha helix. The domain confers DNA
binding properties to the protein, as per other winged
helix domains.
Length = 82
Score = 45.2 bits (108), Expect = 2e-06
Identities = 16/21 (76%), Positives = 17/21 (80%)
Query: 1 DGYRLTNQGYDYLALKTLSSR 21
DGYRLT GYDYLAL+TL R
Sbjct: 62 DGYRLTYLGYDYLALRTLVKR 82
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 47.6 bits (114), Expect = 3e-06
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 90 KEFAYMNALYDRGFPVPKP--VDINRHCVIMELVKGDPLSRVSHVNNVEA--LYDELMDL 145
+E M+ G VP VD ++ME ++G+PL + + N +E L E+ L
Sbjct: 48 REARIMSRARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGMEELELSREIGRL 107
Query: 146 IVRFANHGVIHGDFNEFNLMLQEDERPVVIDF 177
+ + + G+IHGD N M+ + +IDF
Sbjct: 108 VGKLHSAGIIHGDLTTSN-MILSGGKIYLIDF 138
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 48.3 bits (116), Expect = 5e-06
Identities = 42/214 (19%), Positives = 82/214 (38%), Gaps = 49/214 (22%)
Query: 28 GNQIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRIS 87
+ IG G E++I E G V+K R+ + +R+ + R +
Sbjct: 338 DHLIGKGAEADIKKGEY-LGRDAVIK-ERVPKG-YRHPELDERLRTERTR---------- 384
Query: 88 ATKEFAYMNALYDRGFPVP--KPVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDL 145
E ++ G P P VD ++ME + G L V + L ++ ++
Sbjct: 385 --AEARLLSEARRAGVPTPVIYDVDPEEKTIVMEYIGGKDLKDV--LEGNPELVRKVGEI 440
Query: 146 IVRFANHGVIHGDFNEFNLMLQEDERPVVIDF-------------------PQMVSTSHP 186
+ + G++HGD N +++ D+R +IDF Q + ++H
Sbjct: 441 VAKLHKAGIVHGDLTTSNFIVR-DDRLYLIDFGLGKYSDLIEDKAVDLHVLKQSLESTHY 499
Query: 187 NAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILD 220
+ + ++ F + GY + ED+L+
Sbjct: 500 DFEELWEA--------FLE--GYRETEGAEDVLE 523
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 46.0 bits (109), Expect = 1e-05
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 34/132 (25%)
Query: 30 QIGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISAT 89
+ G + Y+V DG VLKL
Sbjct: 4 PLSGGASNRTYLVGTGDG-RYVLKLAPPAEA------------------------AEELR 38
Query: 90 KEFAYMNALYDRGFPVPKPVD-------INRHCVIMELVKGDPLSRVSHVNNVEALYDEL 142
+E A + L G PVP+ + + ++ME + G+ L+R AL + L
Sbjct: 39 RELALLRHLAAAGIPVPRVLAGGTDGGGLGLPFLLMEGLPGEVLTRPLDPAERGALLEAL 98
Query: 143 MDLIVRFANHGV 154
L+ R H V
Sbjct: 99 ARLLARL--HSV 108
Score = 39.9 bits (93), Expect = 0.001
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 135 VEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPV-VIDFPQMVSTSHP 186
E L L+ L+ ++HGD + NL++ R VIDF + P
Sbjct: 149 WERLLAALLALLPALPL-VLVHGDLHPGNLLVDPGGRVTGVIDF-EDAGLGDP 199
>gnl|CDD|218977 pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family. These
lipopolysaccharide kinases are related to protein
kinases pfam00069. This family includes waaP (rfaP) gene
product is required for the addition of phosphate to O-4
of the first heptose residue of the lipopolysaccharide
(LPS) inner core region. It has previously been shown
that WaaP is necessary for resistance to hydrophobic and
polycationic antimicrobials in E. coli and that it is
required for virulence in invasive strains of S.
enterica.
Length = 206
Score = 44.3 bits (105), Expect = 4e-05
Identities = 37/161 (22%), Positives = 55/161 (34%), Gaps = 41/161 (25%)
Query: 42 VEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLY-LSRISATKEFAYMNALYD 100
V N L+ + G N+ + + L R + +EF + L +
Sbjct: 23 VVARKDN-GALRHYYRGGMW-----------GKLNRDRYRFPLGRTRSFREFRLLRRLRE 70
Query: 101 RGFPVPKPV-------DINRHCVI-MELVKG------------DPLSRVSHVNNVEALYD 140
G PVPKPV + E ++G DP + AL+
Sbjct: 71 AGVPVPKPVAAGAVKVGGEYQADLLTERLEGAQDLVTWLAQWADPAEELR-----RALWR 125
Query: 141 ELMDLIVRFANHGVIHGDFNEFNLMLQEDERPV---VIDFP 178
+ LI R GV H D N N++L E +IDF
Sbjct: 126 AVGRLIARMHRAGVNHTDLNAHNILLDTGEGGFKVWLIDFD 166
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 43.8 bits (104), Expect = 6e-05
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 19/149 (12%)
Query: 31 IGVGKESNIYVVEDCDGNPLVLKLHRLGRTCFRNLKEKRDYHAHRNKAGWLYLSRISATK 90
I G E+ IY+ D G P V+K +R +R+ L R +
Sbjct: 4 IKQGAEAIIYLT-DFLGLPAVVK--------------ERIPKRYRHPELDEKLRRERTRR 48
Query: 91 EFAYMNALYDRGFPVPK--PVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVR 148
E + + G PVP VD + ++ME ++G+ L + L E+ L+ +
Sbjct: 49 EARILAKAREAGVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEARPD-LLREVGRLVGK 107
Query: 149 FANHGVIHGDFNEFNLMLQEDERPVVIDF 177
G++HGD N++L R IDF
Sbjct: 108 LHKAGIVHGDLTTSNIIL-SGGRIYFIDF 135
>gnl|CDD|240174 cd05153, HomoserineK_II, Homoserine Kinase, type II. Homoserine
kinase is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of unusual homoserine kinases, from a subset of
bacteria, which have a PK fold. These proteins do not
bear any similarity to the GHMP family homoserine
kinases present in most bacteria and eukaryotes.
Homoserine kinase catalyzes the transfer of the
gamma-phosphoryl group from ATP to L-homoserine
producing L-homoserine phosphate, an intermediate in the
production of the amino acids threonine, methionine, and
isoleucine.
Length = 296
Score = 36.8 bits (86), Expect = 0.018
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 101 RGFPVPKPVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFANH-------G 153
+ FP + + PL L D + R G
Sbjct: 124 QSFPGERNNLRGLAWIRELGKDLLPLL-------SAEDRALLADELARQDAFDPSDLPRG 176
Query: 154 VIHGD-FNEFNLMLQEDERPVVIDF 177
VIH D F + N++ DE VIDF
Sbjct: 177 VIHADLFRD-NVLFDGDELSGVIDF 200
>gnl|CDD|240175 cd05154, ACAD10_11_like, Acyl-CoA dehydrogenase (ACAD) 10 and 11,
N-terminal domain, and similar proteins. This subfamily
is part of a larger superfamily that includes the
catalytic domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This subfamily is
composed of bacterial and eukaryotic proteins with
similarity to the N-terminal domains of vertebrate
ACAD10 and ACAD11. ACADs are a family of flavoproteins
that are involved in the beta-oxidation of fatty
acyl-CoA derivatives. ACAD deficiency can cause
metabolic disorders including muscle fatigue,
hypoglycemia, and hepatic lipidosis, among them. There
are at least 11 distinct ACADs, some of which show
distinct substrate specificities to either
straight-chain or branched-chain fatty acids. ACAD10 is
widely expressed in human tissues and is highly
expressed in liver, kidney, pancreas, and spleen. ACAD10
and ACAD11 contain a long N-terminal domain with
similarity to phosphotransferases with a PK fold, which
is absent in other ACADs. They may exhibit multiple
functions in acyl-CoA oxidation pathways.
Length = 223
Score = 36.4 bits (85), Expect = 0.018
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 18/95 (18%)
Query: 69 RDYHAHRNKAGWLYLSRISATKEFAYMNALYDRGFPVPKPVDINRHC----------VIM 118
R R G L S +E+ + AL G PVPK + C +M
Sbjct: 23 RRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLA---LCEDPSVLGTPFYVM 79
Query: 119 ELVKGDPLSRVSHVNNVE-----ALYDELMDLIVR 148
E V G L + AL L D +
Sbjct: 80 ERVDGRVLRDRLLRPELSPEERRALARALADTLAA 114
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 34.6 bits (80), Expect = 0.11
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 24/107 (22%)
Query: 89 TKEFAYMNALY-----DRGFPVPKPVD--INRHCVIMELVKGDPLSRVSHVNNVEALY-- 139
+E A D VPK R + ME + G +S ++ AL
Sbjct: 209 RREAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKIS------DIAALKSA 262
Query: 140 ----DELMDLIVRF-----ANHGVIHGDFNEFNLMLQEDERPVVIDF 177
EL +L+VR G H D + N++++ D R V++DF
Sbjct: 263 GIDRKELAELLVRAFLRQLLRDGFFHADPHPGNILVRSDGRIVLLDF 309
>gnl|CDD|237032 PRK12274, PRK12274, serine/threonine protein kinase; Provisional.
Length = 218
Score = 33.3 bits (76), Expect = 0.19
Identities = 34/153 (22%), Positives = 55/153 (35%), Gaps = 18/153 (11%)
Query: 46 DGNPLVLKLHRLGRTCFRNLKE----KRDYHAH----RNKAGWLYLSRISATKEFAYMNA 97
LK GR E +RD A R A WL A ++ +
Sbjct: 4 PAVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPR 63
Query: 98 LYDRGFPVPKPVDINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFANHGVIHG 157
P+ + + + + G + + ++ A + L+ + GV H
Sbjct: 64 -------TPRLLHWDGRHLDRSYLAGAAMYQRPPRGDL-AYFRAARRLLQQLHRCGVAHN 115
Query: 158 DF-NEFNLMLQEDERPVVIDFPQMVSTSHPNAQ 189
D E N ++QED P VIDF Q+ +P A+
Sbjct: 116 DLAKEANWLVQEDGSPAVIDF-QLAVRGNPRAR 147
>gnl|CDD|225213 COG2334, COG2334, Putative homoserine kinase type II (protein
kinase fold) [General function prediction only].
Length = 331
Score = 33.5 bits (77), Expect = 0.19
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 101 RGFPVPKPVDINRH----CVIMELVKGDPLSRVSHVNNVEALYDELMDLI-VRFANHG-- 153
RGFP +P + R L++ D + + A D L+ + G
Sbjct: 139 RGFPFERPNALRRLEWDILEPRALLRLDLVEPEDLRAALLAALDRLLARLPAHLPALGDQ 198
Query: 154 VIHGDFNEFNLMLQEDERPV-VIDFPQMV 181
+IHGD + N++ +D IDF
Sbjct: 199 IIHGDLHPDNVLFDDDTDVSGFIDFDDAG 227
>gnl|CDD|225714 COG3173, COG3173, Predicted aminoglycoside phosphotransferase
[General function prediction only].
Length = 321
Score = 33.2 bits (76), Expect = 0.27
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 152 HGVIHGDFNEFNLMLQEDERPV-VIDF 177
++HGD+ NL++ RP V+D+
Sbjct: 198 PVLVHGDYRPGNLIID-PGRPTGVLDW 223
>gnl|CDD|148803 pfam07403, DUF1505, Protein of unknown function (DUF1505). This
family consists of several uncharacterized
Caenorhabditis elegans proteins of around 115 resides in
length. Members of this family contain 6 highly
conserved cysteine residues. The function of this family
is unknown.
Length = 114
Score = 31.0 bits (70), Expect = 0.37
Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 284 STSESIKPEVTSHSGSEEISSEDSRTNNSDVKSNPKESTRSEDTVLKFVKNVELQKNEGK 343
S S + S D+ T + K T S TV ++ K NE
Sbjct: 21 SPSSIQSESWSKAKECTLFYSNDAYTVRCTYTATWKVKTNSTCTVSEYYKKKVTPPNEDP 80
Query: 344 VNEI----------LDKNCVNCAV---EKIN 361
N + +K V+CA EK+
Sbjct: 81 SNGVAQCTKTPCDATEKIPVDCATAFGEKLA 111
>gnl|CDD|223674 COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport
systems, permease components [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 317
Score = 32.5 bits (75), Expect = 0.38
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 116 VIMELVKGDPLSRVSHVNNVEALYDELMD-------LIVRFAN--HGVIHGDF 159
++ L+ GDP S + + + L + L V++ N ++HGDF
Sbjct: 25 FLLRLIPGDPASAILGESATPEAIEALREEYGLDKPLYVQYLNYLKNLLHGDF 77
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 31.7 bits (72), Expect = 0.91
Identities = 21/143 (14%), Positives = 54/143 (37%), Gaps = 9/143 (6%)
Query: 267 EQVDVTMNLYNEGERKDSTSESIKPEVTSHSGSEEISSEDSRTNNSDVKSNP--KESTRS 324
Q D T + +K + E+ K +S + ++ S +N+D K + ++ S
Sbjct: 30 PQKDSTAKTTSHDSKKSNDDETSKDT-SSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDS 88
Query: 325 EDTVLKFVKNVELQKNEGKVNEILDKNCVNCAVEKINPDELQNGDKNDIILDENRLGSNT 384
+ + KN+ + + + + +QN + + + N+
Sbjct: 89 NNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTT------LIQNLFNLNSDISDYEQPRNS 142
Query: 385 KTSRDPSEEDFNFDIRSVTSAST 407
+ S + S ++ + I++ T +
Sbjct: 143 EKSTNDSNKNSDSSIKNDTDTQS 165
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 30.3 bits (69), Expect = 1.4
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 110 DINRHCVIMELVKGDPLSRVSHVNNVEALYDELMDLIVRFAN-------HGVIHGDFNEF 162
D N ++ME +G L + N + DE++ ++++ +G+IH D
Sbjct: 62 DENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPE 121
Query: 163 NLMLQEDERPVVI-DF 177
N++L D V + DF
Sbjct: 122 NILLDSDNGKVKLADF 137
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 30.8 bits (71), Expect = 1.6
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 212 NDLREDILDVEVSASGFTKRMDKELLAQL--GLDESDEELDSEDDTVEDKDEIENLREQV 269
N+LRE++L+ LLA + +D +E+++ + +++E L ++
Sbjct: 156 NELREELLE---------------LLALVEAAIDFPEEDIE-FLSDEKILEKLEELIAEL 199
Query: 270 DVTMNLYNEGER 281
+ + +GE
Sbjct: 200 EALLASARQGEI 211
>gnl|CDD|240176 cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with
similarity to Aminoglycoside 3'-phosphotransferase (APH)
and Choline kinase (ChoK) family members. The APH/ChoK
subfamily is part of a larger superfamily that includes
the catalytic domains of other kinases, such as the
typical serine/threonine/tyrosine protein kinases (PKs),
RIO kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). This family is
composed of APH, ChoK, ethanolamine kinase (ETNK),
macrolide 2'-phosphotransferase (MPH2'), an unusual
homoserine kinase, and uncharacterized proteins with
similarity to the N-terminal domain of acyl-CoA
dehydrogenase 10 (ACAD10). The members of this family
catalyze the transfer of the gamma-phosphoryl group from
ATP (or CTP) to small molecule substrates, such as
aminoglycosides, macrolides, choline, ethanolamine, and
homoserine. Phosphorylation of the antibiotics,
aminoglycosides, and macrolides leads to their
inactivation and to bacterial antibiotic resistance.
Phosphorylation of choline, ethanolamine, and homoserine
serves as precursors to the synthesis of important
biological compounds, such as the major phospholipids,
phosphatidylcholine and phosphatidylethanolamine and the
amino acids, threonine, methionine, and isoleucine.
Length = 235
Score = 30.0 bits (68), Expect = 1.9
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 155 IHGDFNEFNLMLQEDERPVVIDFPQMVSTSHPN-----AQTFFDRDVTCIKDFFRKRFG 208
HGD NL++Q+ VIDF + P A T D D + FR G
Sbjct: 167 FHGDLAPGNLLVQDGRLSAVIDFGCL-GVGDPACDLAIAWTLLDEDS---RAAFRAALG 221
>gnl|CDD|143289 cd05881, Ig1_Necl-2, First (N-terminal) immunoglobulin (Ig)-like
domain of nectin-like molecule 2 (also known as cell
adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain
similar to the N-terminal immunoglobulin (Ig)-like
domain of nectin-like molecule-2, Necl-2 (also known as
cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A,
Tslc1, sgIGSF, and RA175). Nectin-like molecules have
similar domain structures to those of nectins. At least
five nectin-like molecules have been identified (Necl-1
- Necl-5). They all have an extracellular region
containing three Ig-like domains, a transmembrane
region, and a cytoplasmic region. The N-terminal Ig-like
domain of the extracellular region, belongs to the
V-type subfamily of Ig domains, is essential to
cell-cell adhesion, and plays a part in the interaction
with the envelope glycoprotein D of various viruses.
Necl-2 has Ca(2+)-independent homophilic and
heterophilic cell-cell adhesion activity. Necl-2 is
expressed in a wide variety of tissues, and is a
putative tumour suppressor gene, which is downregulated
in aggressive neuroblastoma.
Length = 95
Score = 28.8 bits (64), Expect = 1.9
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 185 HPNAQTFFDRDVTCIKDFFRKRFGYTSNDLREDILDVEVSASG 227
+PN QT + RDV +KD + ++SN+LR + +V +S G
Sbjct: 33 NPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEG 75
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.4 bits (69), Expect = 2.1
Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 14/176 (7%)
Query: 209 YTSNDLREDILDVEVSASGFTKRMDKELLAQLGLDESDEELDS-----------EDDTVE 257
S+ ED D E G M ++ L +L E DEE E
Sbjct: 330 EDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEE 389
Query: 258 DKDEIENLREQVDVTMNLYNEGERKDSTSESIKPEVTSHSG-SEEISSEDSRTNNSDVKS 316
+ EIE LR +++ E + S + + +G E S + + N ++ K
Sbjct: 390 NDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKE 449
Query: 317 NPK-ESTRSEDTVLKFVKNVELQKNEGKVNEILDKNCVNCAVEKINPDELQNGDKN 371
+ + + K ++ K +E K +++ NP
Sbjct: 450 KKESDEEEELEDEE-EAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVG 504
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 30.4 bits (69), Expect = 2.2
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 152 HGVIHGDFNEFNLMLQEDERPVV---IDFPQMVST 183
VIH D N++N+++ D+ + IDF V
Sbjct: 203 AQVIHNDANDYNILVDADDGERISGLIDFGDAVHA 237
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 30.3 bits (68), Expect = 2.3
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 250 DSEDDTVEDKDEIENLREQVDVTMNLYNEGERKDSTSESIKPEVTSHS 297
DSE + E+++E E E++DV + + S +T S
Sbjct: 225 DSESEEDEEEEEEEEEEEEIDVVT--VEKRRSSSNRKASTSESITVPS 270
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 30.0 bits (68), Expect = 3.3
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 327 TVLKFVKNVELQKNEGKVN-----EILDKNCVNCAVEKINPDELQNGDKNDII 374
V + +KN + +N E L+ N + K + + +N K ++
Sbjct: 629 AVEQILKNSFIILKNNTINYKELVEFLNDNLLRITHFKFSEKDFENYHKEELA 681
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 29.4 bits (66), Expect = 3.7
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 17/76 (22%)
Query: 116 VIMELVKGDPLSRVSHVNNVE------------ALYDELMDLIVRFAN--HGVIHGDFNE 161
++M+L++G PL H N+++ ++ +++ L +R+ + ++H D
Sbjct: 86 IVMDLIEGAPLG--EHFNSLKEKKQRFTEERIWNIFVQMV-LALRYLHKEKRIVHRDLTP 142
Query: 162 FNLMLQEDERPVVIDF 177
N+ML ED++ + DF
Sbjct: 143 NNIMLGEDDKVTITDF 158
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 29.2 bits (65), Expect = 3.9
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 243 DESDEELDSEDDTVEDKDEIENLREQVDVT----MNLYNEGER---KDSTSESIKPEVTS 295
+E DEE+ S+ +++ E E+ + + + EGER K E ++ EV +
Sbjct: 190 EEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVIN 249
Query: 296 HSGSEEISSEDSRTNNSDVKSNPKESTRSE 325
E S + + +P + + E
Sbjct: 250 LFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
>gnl|CDD|233667 TIGR01982, UbiB, 2-polyprenylphenol 6-hydroxylase. This model
represents the enzyme (UbiB) which catalyzes the first
hydroxylation step in the ubiquinone biosynthetic
pathway in bacteria. It is believed that the reaction is
2-polyprenylphenol -> 6-hydroxy-2-polyprenylphenol. This
model finds hits primarily in the proteobacteria. The
gene is also known as AarF in certain species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 437
Score = 29.6 bits (67), Expect = 4.1
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 96 NALYDRGFPVPKPVDINR---HCVIMELVKGDPLSRVSHVNNVEALYDE---LMDLIVRF 149
N D G VP+ V +R + ME + G PLS ++ ++ EA D +L F
Sbjct: 213 NFKNDPGVYVPE-VYWDRTSERVLTMEWIDGIPLSDIAALD--EAGLDRKALAENLARSF 269
Query: 150 ANH----GVIHGDFNEFNLMLQEDERPVVIDF 177
N G H D + N+ + +D + + +DF
Sbjct: 270 LNQVLRDGFFHADLHPGNIFVLKDGKIIALDF 301
>gnl|CDD|181169 PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed.
Length = 324
Score = 29.3 bits (66), Expect = 4.3
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 231 RMDKELLAQLGLDESDEELDSEDDTVEDK--DEIENLREQVDVTMNLYNEGE 280
R+ +EL QLG + +DEEL E E+K D +E+ R+ V + M + ++ E
Sbjct: 177 RIKRELHQQLGREATDEELAEESGIPEEKIADLLEHSRDPVSLDMPVGSDEE 228
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily;
Phd is a cytosolic regulator of G protein functions. It
specifically binds G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane. This impedes the formation
of a functional G protein trimer (G protein
alphabetagamma), thereby inhibiting G protein-mediated
signal transduction. Phd also inhibits the GTPase
activity of G protein alpha. Phd can be phosphorylated
by protein kinase A and G protein-coupled receptor
kinase 2, leading to its inactivation. Phd was
originally isolated from the retina, where it is highly
expressed and has been implicated to play an important
role in light adaptation. It is also found in the pineal
gland, liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 28.4 bits (64), Expect = 4.9
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 242 LDESDEELDSEDDTVEDKDEIENLREQVDVTMNLYNEGERKDSTSESIK----PEVTSHS 297
L ES++E D +D+ E+ + REQ M E + E+ S
Sbjct: 22 LKESEQEDDDDDEDKEEFL--QQYREQ---RMQ-----EMHAKLPFGRRFGKVYELDSGE 71
Query: 298 G-SEEISSEDSRT 309
+ I E T
Sbjct: 72 QFLDAIDKEGKDT 84
>gnl|CDD|223004 PHA03173, PHA03173, UL37 tegument protein; Provisional.
Length = 1028
Score = 29.2 bits (66), Expect = 4.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 14/60 (23%)
Query: 125 PLSRVSHVNNVEALYDELMDLIVRFANHGVIHGDFNEFNLMLQEDERPVVIDFPQMVSTS 184
P+ +H N+EAL EL H V+ +L + RP V P VS S
Sbjct: 660 PVPTTAHAENIEALLGEL---------HSVVRAAI----ELLPPEVRPPVPPRPS-VSNS 705
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.8 bits (64), Expect = 6.5
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 252 EDDTVEDKDEIENLREQVDVTMNLYNEGERKDSTSESIKPEVTSHSGSEEISSEDSRTNN 311
ED V + + E + Q+++ N + KD + +K E + E +++
Sbjct: 271 EDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKR 330
Query: 312 SDVKSN---PKESTRSEDT 327
V + K ++ T
Sbjct: 331 EPVAEDLQKTKPQVEAQPT 349
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 28.8 bits (64), Expect = 6.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 409 PPEVI---RARVKKALEKRERTKVRIRNLAKGEASATSRKRRENR 450
PP V+ RAR ++ EKR + + L+ EA++ R E +
Sbjct: 875 PPAVVEKDRARAEELREKRGKLEAHRAMLSGSEANSARRDTMEIQ 919
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.8 bits (64), Expect = 7.8
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 244 ESDEELDSEDDTVEDK---DEIENLR------EQVDVTMNLYNEGERKDSTSESIKPEVT 294
+ DEE S+D ++D+ D EN E +D+ +L + + D + +S ++
Sbjct: 3953 KEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMD 4012
Query: 295 SHSGSEEISSEDSRTNNSDVKSNPKESTRSEDTVLKFVKNVELQKNEGKVNE 346
+ E D+ + +P E + D ++ +L +++ K+NE
Sbjct: 4013 MEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNE 4064
>gnl|CDD|223124 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
synthetase domain [Nucleotide transport and metabolism].
Length = 743
Score = 28.7 bits (65), Expect = 8.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 24 IASFGNQIG---VGKESNIYVVEDCDGNPLVL 52
IA++GN+IG VG E E GNPLV
Sbjct: 162 IAAYGNEIGVPTVGGEFRFD--ESYVGNPLVN 191
>gnl|CDD|223177 COG0099, RpsM, Ribosomal protein S13 [Translation, ribosomal
structure and biogenesis].
Length = 121
Score = 27.1 bits (61), Expect = 8.4
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 227 GFTKRMDKELLAQLGLDE-------SDEELDSEDDTVEDKDEIE-NLREQVDVTMNL 275
G +R KE+ + G+D ++EE++ D +++K +E +LR + V M++
Sbjct: 24 GIGRRRAKEICKKAGIDPDKRVGELTEEEIERLRDAIQNKYLVEGDLRRE--VRMDI 78
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 28.7 bits (64), Expect = 9.1
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 195 DVTCIKDFFRKRFGYTSNDLREDILDVEVSASGFTKRMDKELLAQLGLDESDEELDSEDD 254
V D+ ++ LRE I ++E + S + ++ +++ +S D
Sbjct: 37 AVLQYLDWIQEG-RDLLYGLREGIENIEKAISKLLELVEAYAGGNEDDSLNEDIHNSLFD 95
Query: 255 TVEDKDEIE--------NLREQVDVTMNLYNE 278
+E+ ++E L++ VD + +NE
Sbjct: 96 LIEEVSDLELDIKPWLIALKKLVDTAIE-FNE 126
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 28.7 bits (64), Expect = 9.2
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 224 SASGFTKRMDKELLAQLGLDESDEELDSEDDTVEDKDEIENLREQVDVTMNLYNEGERKD 283
+A G M + +S + SED V+ ++ I E+ ++T+ + E
Sbjct: 535 AAEGNNVDMGRVESIHSSDQQSIIKQGSEDTDVDMEEAISEQEEKHEITIV--DCAEPVR 592
Query: 284 STSESIKPEVTSHSGSEEISSEDSRTNNSDVKSNPKES 321
+T S++ + H SE+ E + ++S K N +ES
Sbjct: 593 NTQNSLQIDTLDHESSEQPLEEKNALHSSVSKLNTEES 630
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.5 bits (64), Expect = 9.3
Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 23/154 (14%)
Query: 221 VEVSASGFTKRMDKELLAQLGLDESDEELDSEDDTVEDKDEIENLREQVDVTMNLYNEGE 280
+ S + +D A+ D+ + +D +D E + I +D + L
Sbjct: 768 EKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFE-LELIGKQEINIDYILELLQTFN 826
Query: 281 RKDSTSESIKPEVTSHSGSEEISSEDSRT--------NNSDVKSNPKESTRSEDTVLKFV 332
K+ ES+K + + ED R + + K+ +E ++
Sbjct: 827 DKNGAYESLKELIERI---IKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYI 883
Query: 333 KNVELQKNEGKVNEILDKNCVNCAVEKINPDELQ 366
+ ++ + E E +N +EL
Sbjct: 884 LAKKEEEFKQFAEE-----------EGLNEEELA 906
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.132 0.369
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,253,367
Number of extensions: 2305383
Number of successful extensions: 2528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2454
Number of HSP's successfully gapped: 123
Length of query: 460
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 360
Effective length of database: 6,502,202
Effective search space: 2340792720
Effective search space used: 2340792720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.4 bits)